Multiple sequence alignment - TraesCS3B01G451300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G451300 chr3B 100.000 3743 0 0 1 3743 691753129 691749387 0.000000e+00 6913.0
1 TraesCS3B01G451300 chr3B 95.153 392 13 1 770 1155 691924170 691923779 6.870000e-172 614.0
2 TraesCS3B01G451300 chr3B 84.202 595 46 17 1239 1785 691923782 691923188 5.500000e-148 534.0
3 TraesCS3B01G451300 chr3B 91.509 318 17 4 2689 3000 691922458 691922145 2.670000e-116 429.0
4 TraesCS3B01G451300 chr3B 82.411 506 35 23 1784 2247 691923336 691922843 3.500000e-105 392.0
5 TraesCS3B01G451300 chr3B 81.068 412 42 23 1464 1863 691751603 691751216 2.830000e-76 296.0
6 TraesCS3B01G451300 chr3B 81.068 412 42 23 1527 1914 691751666 691751267 2.830000e-76 296.0
7 TraesCS3B01G451300 chr3B 90.566 159 6 2 1669 1818 691751374 691751216 6.340000e-48 202.0
8 TraesCS3B01G451300 chr3B 90.566 159 6 2 1756 1914 691751461 691751312 6.340000e-48 202.0
9 TraesCS3B01G451300 chr3B 87.919 149 6 4 1739 1875 691923336 691923188 8.320000e-37 165.0
10 TraesCS3B01G451300 chr3B 80.513 195 28 4 3095 3289 691775647 691775463 1.400000e-29 141.0
11 TraesCS3B01G451300 chr3B 100.000 35 0 0 1962 1996 691923272 691923238 8.680000e-07 65.8
12 TraesCS3B01G451300 chr3B 100.000 35 0 0 1962 1996 691923323 691923289 8.680000e-07 65.8
13 TraesCS3B01G451300 chr3D 93.258 1498 67 12 2271 3743 524309888 524308400 0.000000e+00 2176.0
14 TraesCS3B01G451300 chr3D 91.947 1217 66 11 683 1875 524311516 524310308 0.000000e+00 1676.0
15 TraesCS3B01G451300 chr3D 86.832 1253 106 28 571 1785 524648513 524647282 0.000000e+00 1345.0
16 TraesCS3B01G451300 chr3D 82.846 787 58 36 1527 2246 524310728 524309952 5.270000e-178 634.0
17 TraesCS3B01G451300 chr3D 87.534 369 18 13 2689 3037 524646672 524646312 5.820000e-108 401.0
18 TraesCS3B01G451300 chr3D 88.803 259 29 0 304 562 524312418 524312160 6.030000e-83 318.0
19 TraesCS3B01G451300 chr3D 85.000 300 17 15 1846 2131 524647356 524647071 2.850000e-71 279.0
20 TraesCS3B01G451300 chr3D 80.914 372 46 19 1464 1830 524310659 524310308 1.710000e-68 270.0
21 TraesCS3B01G451300 chr3D 89.937 159 10 1 1756 1914 524310517 524310365 2.280000e-47 200.0
22 TraesCS3B01G451300 chr3D 86.705 173 15 6 581 747 524311672 524311502 6.380000e-43 185.0
23 TraesCS3B01G451300 chr3D 90.833 120 8 1 1669 1785 524310427 524310308 1.390000e-34 158.0
24 TraesCS3B01G451300 chr3D 85.443 158 13 5 148 305 435679596 435679743 5.010000e-34 156.0
25 TraesCS3B01G451300 chr3D 88.596 114 7 1 1801 1914 524310517 524310410 2.350000e-27 134.0
26 TraesCS3B01G451300 chr3D 92.308 65 5 0 1669 1733 524310382 524310318 3.980000e-15 93.5
27 TraesCS3B01G451300 chr3D 82.759 87 6 4 1577 1663 524310444 524310367 6.710000e-08 69.4
28 TraesCS3B01G451300 chr3A 85.306 1783 150 69 571 2305 658907409 658905691 0.000000e+00 1738.0
29 TraesCS3B01G451300 chr3A 88.661 732 49 15 3026 3743 658905116 658904405 0.000000e+00 861.0
30 TraesCS3B01G451300 chr3A 87.092 612 33 9 2335 2939 658905694 658905122 0.000000e+00 651.0
31 TraesCS3B01G451300 chr3A 86.837 547 30 16 1756 2281 658906315 658905790 1.170000e-159 573.0
32 TraesCS3B01G451300 chr3A 86.770 514 21 18 751 1257 658985073 658984600 2.560000e-146 529.0
33 TraesCS3B01G451300 chr3A 84.902 510 43 18 1296 1785 658984597 658984102 5.620000e-133 484.0
34 TraesCS3B01G451300 chr3A 79.528 762 53 44 1846 2545 658984179 658983459 7.370000e-122 448.0
35 TraesCS3B01G451300 chr3A 89.607 356 27 6 2689 3037 658983399 658983047 9.540000e-121 444.0
36 TraesCS3B01G451300 chr3A 86.364 176 13 8 571 738 658985700 658985528 8.260000e-42 182.0
37 TraesCS3B01G451300 chr3A 93.694 111 4 1 1624 1731 658984224 658984114 2.990000e-36 163.0
38 TraesCS3B01G451300 chr3A 85.455 165 14 7 571 728 658985885 658985724 2.990000e-36 163.0
39 TraesCS3B01G451300 chr3A 77.143 105 16 4 1624 1727 658906474 658906377 2.000000e-03 54.7
40 TraesCS3B01G451300 chr3A 96.970 33 0 1 1534 1566 658984179 658984148 2.000000e-03 54.7
41 TraesCS3B01G451300 chr2B 86.770 257 34 0 309 565 657876456 657876712 1.700000e-73 287.0
42 TraesCS3B01G451300 chr7B 84.483 232 33 1 337 568 463636135 463635907 3.760000e-55 226.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G451300 chr3B 691749387 691753129 3742 True 1581.800000 6913 88.653600 1 3743 5 chr3B.!!$R2 3742
1 TraesCS3B01G451300 chr3B 691922145 691924170 2025 True 323.657143 614 91.599143 770 3000 7 chr3B.!!$R3 2230
2 TraesCS3B01G451300 chr3D 524646312 524648513 2201 True 675.000000 1345 86.455333 571 3037 3 chr3D.!!$R2 2466
3 TraesCS3B01G451300 chr3D 524308400 524312418 4018 True 537.627273 2176 88.082364 304 3743 11 chr3D.!!$R1 3439
4 TraesCS3B01G451300 chr3A 658904405 658907409 3004 True 775.540000 1738 85.007800 571 3743 5 chr3A.!!$R1 3172
5 TraesCS3B01G451300 chr3A 658983047 658985885 2838 True 308.462500 529 87.911250 571 3037 8 chr3A.!!$R2 2466

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
268 269 0.040204 AGCCACAATGCCCTAAAGCT 59.960 50.0 0.0 0.0 0.0 3.74 F
269 270 0.174162 GCCACAATGCCCTAAAGCTG 59.826 55.0 0.0 0.0 0.0 4.24 F
1803 3079 0.536006 ACAGCAAGGTCCAGAAGCAC 60.536 55.0 0.0 0.0 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1886 3228 0.037232 GTAGCCGTGCTTCTGGTTCT 60.037 55.0 3.71 0.0 40.44 3.01 R
1887 3229 1.352156 CGTAGCCGTGCTTCTGGTTC 61.352 60.0 3.71 0.0 40.44 3.62 R
3314 4905 0.814457 GCCACGGCACAATCCATTTA 59.186 50.0 2.36 0.0 41.49 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 9.932207 AAATGCATAAGATTTCAACTCAAATCA 57.068 25.926 0.00 0.00 42.86 2.57
52 53 9.745880 ATGCATAAGATTTCAACTCAAATCATC 57.254 29.630 0.00 0.00 42.86 2.92
53 54 7.911727 TGCATAAGATTTCAACTCAAATCATCG 59.088 33.333 8.28 0.00 42.86 3.84
54 55 7.912250 GCATAAGATTTCAACTCAAATCATCGT 59.088 33.333 8.28 0.00 42.86 3.73
55 56 9.430838 CATAAGATTTCAACTCAAATCATCGTC 57.569 33.333 8.28 0.00 42.86 4.20
56 57 7.678947 AAGATTTCAACTCAAATCATCGTCT 57.321 32.000 8.28 0.00 42.86 4.18
57 58 7.678947 AGATTTCAACTCAAATCATCGTCTT 57.321 32.000 8.28 0.00 42.86 3.01
58 59 8.103948 AGATTTCAACTCAAATCATCGTCTTT 57.896 30.769 8.28 0.00 42.86 2.52
59 60 9.219603 AGATTTCAACTCAAATCATCGTCTTTA 57.780 29.630 8.28 0.00 42.86 1.85
60 61 9.994432 GATTTCAACTCAAATCATCGTCTTTAT 57.006 29.630 1.82 0.00 40.93 1.40
90 91 8.924511 ACTTCTCTACTCAATCAAATTTTCCA 57.075 30.769 0.00 0.00 0.00 3.53
91 92 9.354673 ACTTCTCTACTCAATCAAATTTTCCAA 57.645 29.630 0.00 0.00 0.00 3.53
92 93 9.837525 CTTCTCTACTCAATCAAATTTTCCAAG 57.162 33.333 0.00 0.00 0.00 3.61
93 94 8.924511 TCTCTACTCAATCAAATTTTCCAAGT 57.075 30.769 0.00 0.00 0.00 3.16
94 95 9.354673 TCTCTACTCAATCAAATTTTCCAAGTT 57.645 29.630 0.00 0.00 0.00 2.66
95 96 9.617975 CTCTACTCAATCAAATTTTCCAAGTTC 57.382 33.333 0.00 0.00 0.00 3.01
96 97 9.354673 TCTACTCAATCAAATTTTCCAAGTTCT 57.645 29.630 0.00 0.00 0.00 3.01
102 103 9.859427 CAATCAAATTTTCCAAGTTCTATAGCA 57.141 29.630 0.00 0.00 0.00 3.49
105 106 9.241919 TCAAATTTTCCAAGTTCTATAGCATGA 57.758 29.630 0.00 0.00 0.00 3.07
106 107 9.859427 CAAATTTTCCAAGTTCTATAGCATGAA 57.141 29.630 0.00 0.00 0.00 2.57
109 110 8.862325 TTTTCCAAGTTCTATAGCATGAAAGA 57.138 30.769 0.00 0.00 0.00 2.52
110 111 8.862325 TTTCCAAGTTCTATAGCATGAAAGAA 57.138 30.769 0.00 0.00 0.00 2.52
111 112 8.498054 TTCCAAGTTCTATAGCATGAAAGAAG 57.502 34.615 0.00 0.00 0.00 2.85
112 113 7.851228 TCCAAGTTCTATAGCATGAAAGAAGA 58.149 34.615 0.00 0.00 0.00 2.87
113 114 7.984050 TCCAAGTTCTATAGCATGAAAGAAGAG 59.016 37.037 0.00 0.00 0.00 2.85
114 115 7.984050 CCAAGTTCTATAGCATGAAAGAAGAGA 59.016 37.037 0.00 0.00 0.00 3.10
115 116 9.033481 CAAGTTCTATAGCATGAAAGAAGAGAG 57.967 37.037 0.00 0.00 0.00 3.20
116 117 8.532186 AGTTCTATAGCATGAAAGAAGAGAGA 57.468 34.615 0.00 0.00 0.00 3.10
117 118 8.632679 AGTTCTATAGCATGAAAGAAGAGAGAG 58.367 37.037 0.00 0.00 0.00 3.20
118 119 7.523293 TCTATAGCATGAAAGAAGAGAGAGG 57.477 40.000 0.00 0.00 0.00 3.69
119 120 7.293828 TCTATAGCATGAAAGAAGAGAGAGGA 58.706 38.462 0.00 0.00 0.00 3.71
120 121 4.470334 AGCATGAAAGAAGAGAGAGGAC 57.530 45.455 0.00 0.00 0.00 3.85
121 122 3.837146 AGCATGAAAGAAGAGAGAGGACA 59.163 43.478 0.00 0.00 0.00 4.02
122 123 3.932089 GCATGAAAGAAGAGAGAGGACAC 59.068 47.826 0.00 0.00 0.00 3.67
123 124 4.562347 GCATGAAAGAAGAGAGAGGACACA 60.562 45.833 0.00 0.00 0.00 3.72
124 125 5.545588 CATGAAAGAAGAGAGAGGACACAA 58.454 41.667 0.00 0.00 0.00 3.33
125 126 5.815233 TGAAAGAAGAGAGAGGACACAAT 57.185 39.130 0.00 0.00 0.00 2.71
126 127 5.545588 TGAAAGAAGAGAGAGGACACAATG 58.454 41.667 0.00 0.00 0.00 2.82
127 128 5.305386 TGAAAGAAGAGAGAGGACACAATGA 59.695 40.000 0.00 0.00 0.00 2.57
128 129 5.815233 AAGAAGAGAGAGGACACAATGAA 57.185 39.130 0.00 0.00 0.00 2.57
129 130 6.371595 AAGAAGAGAGAGGACACAATGAAT 57.628 37.500 0.00 0.00 0.00 2.57
130 131 6.371595 AGAAGAGAGAGGACACAATGAATT 57.628 37.500 0.00 0.00 0.00 2.17
131 132 6.777782 AGAAGAGAGAGGACACAATGAATTT 58.222 36.000 0.00 0.00 0.00 1.82
132 133 6.878389 AGAAGAGAGAGGACACAATGAATTTC 59.122 38.462 0.00 0.00 0.00 2.17
133 134 6.119240 AGAGAGAGGACACAATGAATTTCA 57.881 37.500 0.75 0.75 0.00 2.69
134 135 6.537355 AGAGAGAGGACACAATGAATTTCAA 58.463 36.000 2.68 0.00 0.00 2.69
135 136 6.429385 AGAGAGAGGACACAATGAATTTCAAC 59.571 38.462 2.68 0.00 0.00 3.18
136 137 5.180117 AGAGAGGACACAATGAATTTCAACG 59.820 40.000 2.68 0.33 0.00 4.10
137 138 5.063204 AGAGGACACAATGAATTTCAACGA 58.937 37.500 2.68 0.00 0.00 3.85
138 139 5.180117 AGAGGACACAATGAATTTCAACGAG 59.820 40.000 2.68 0.00 0.00 4.18
139 140 4.216257 AGGACACAATGAATTTCAACGAGG 59.784 41.667 2.68 0.00 0.00 4.63
140 141 4.023193 GGACACAATGAATTTCAACGAGGT 60.023 41.667 2.68 0.00 0.00 3.85
141 142 5.108385 ACACAATGAATTTCAACGAGGTC 57.892 39.130 2.68 0.00 0.00 3.85
142 143 4.578516 ACACAATGAATTTCAACGAGGTCA 59.421 37.500 2.68 0.00 0.00 4.02
143 144 5.241506 ACACAATGAATTTCAACGAGGTCAT 59.758 36.000 2.68 0.00 0.00 3.06
144 145 6.429692 ACACAATGAATTTCAACGAGGTCATA 59.570 34.615 2.68 0.00 0.00 2.15
145 146 6.963242 CACAATGAATTTCAACGAGGTCATAG 59.037 38.462 2.68 0.00 0.00 2.23
146 147 6.878923 ACAATGAATTTCAACGAGGTCATAGA 59.121 34.615 2.68 0.00 0.00 1.98
147 148 6.910536 ATGAATTTCAACGAGGTCATAGAC 57.089 37.500 2.68 0.00 0.00 2.59
148 149 5.789521 TGAATTTCAACGAGGTCATAGACA 58.210 37.500 0.00 0.00 33.68 3.41
149 150 6.406370 TGAATTTCAACGAGGTCATAGACAT 58.594 36.000 0.00 0.00 33.68 3.06
150 151 6.313658 TGAATTTCAACGAGGTCATAGACATG 59.686 38.462 0.00 0.00 33.68 3.21
151 152 3.801114 TCAACGAGGTCATAGACATGG 57.199 47.619 0.00 0.00 33.68 3.66
152 153 2.430694 TCAACGAGGTCATAGACATGGG 59.569 50.000 0.00 0.00 33.68 4.00
153 154 0.753262 ACGAGGTCATAGACATGGGC 59.247 55.000 0.00 0.00 33.68 5.36
154 155 0.319040 CGAGGTCATAGACATGGGCG 60.319 60.000 0.00 0.00 33.68 6.13
155 156 0.753262 GAGGTCATAGACATGGGCGT 59.247 55.000 0.00 0.00 33.68 5.68
156 157 1.961394 GAGGTCATAGACATGGGCGTA 59.039 52.381 0.00 0.00 33.68 4.42
157 158 1.964223 AGGTCATAGACATGGGCGTAG 59.036 52.381 0.00 0.00 33.68 3.51
158 159 1.961394 GGTCATAGACATGGGCGTAGA 59.039 52.381 0.00 0.00 33.68 2.59
159 160 2.288273 GGTCATAGACATGGGCGTAGAC 60.288 54.545 0.00 0.00 33.68 2.59
160 161 2.361119 GTCATAGACATGGGCGTAGACA 59.639 50.000 0.00 0.00 30.94 3.41
161 162 2.623416 TCATAGACATGGGCGTAGACAG 59.377 50.000 0.00 0.00 37.00 3.51
162 163 1.399714 TAGACATGGGCGTAGACAGG 58.600 55.000 0.00 0.00 37.00 4.00
163 164 1.521681 GACATGGGCGTAGACAGGC 60.522 63.158 0.00 0.00 37.00 4.85
169 170 4.162690 GCGTAGACAGGCCCCAGG 62.163 72.222 0.00 0.00 0.00 4.45
203 204 3.708544 CCGGGGCGTGAGGGTAAA 61.709 66.667 0.00 0.00 0.00 2.01
204 205 2.348243 CGGGGCGTGAGGGTAAAA 59.652 61.111 0.00 0.00 0.00 1.52
205 206 2.036571 CGGGGCGTGAGGGTAAAAC 61.037 63.158 0.00 0.00 0.00 2.43
206 207 1.676635 GGGGCGTGAGGGTAAAACC 60.677 63.158 0.00 0.00 37.60 3.27
207 208 1.377612 GGGCGTGAGGGTAAAACCT 59.622 57.895 0.00 0.00 45.57 3.50
208 209 0.614812 GGGCGTGAGGGTAAAACCTA 59.385 55.000 0.00 0.00 42.10 3.08
209 210 1.406477 GGGCGTGAGGGTAAAACCTAG 60.406 57.143 0.00 0.00 42.10 3.02
210 211 1.551883 GGCGTGAGGGTAAAACCTAGA 59.448 52.381 0.00 0.00 42.10 2.43
211 212 2.614779 GCGTGAGGGTAAAACCTAGAC 58.385 52.381 0.00 0.00 42.10 2.59
212 213 2.233186 GCGTGAGGGTAAAACCTAGACT 59.767 50.000 0.00 0.00 42.10 3.24
213 214 3.306571 GCGTGAGGGTAAAACCTAGACTT 60.307 47.826 0.00 0.00 42.10 3.01
214 215 4.243270 CGTGAGGGTAAAACCTAGACTTG 58.757 47.826 0.00 0.00 42.10 3.16
215 216 4.262335 CGTGAGGGTAAAACCTAGACTTGT 60.262 45.833 0.00 0.00 42.10 3.16
216 217 5.618236 GTGAGGGTAAAACCTAGACTTGTT 58.382 41.667 0.00 0.00 42.10 2.83
217 218 6.060136 GTGAGGGTAAAACCTAGACTTGTTT 58.940 40.000 0.00 0.00 42.10 2.83
218 219 7.219322 GTGAGGGTAAAACCTAGACTTGTTTA 58.781 38.462 0.00 0.00 42.10 2.01
219 220 7.881751 GTGAGGGTAAAACCTAGACTTGTTTAT 59.118 37.037 0.00 0.00 42.10 1.40
220 221 8.442374 TGAGGGTAAAACCTAGACTTGTTTATT 58.558 33.333 0.00 0.00 42.10 1.40
221 222 8.631480 AGGGTAAAACCTAGACTTGTTTATTG 57.369 34.615 0.00 0.00 39.65 1.90
222 223 7.176165 AGGGTAAAACCTAGACTTGTTTATTGC 59.824 37.037 0.00 0.00 39.65 3.56
223 224 7.176165 GGGTAAAACCTAGACTTGTTTATTGCT 59.824 37.037 0.00 0.00 38.64 3.91
224 225 9.223099 GGTAAAACCTAGACTTGTTTATTGCTA 57.777 33.333 0.00 0.00 33.76 3.49
226 227 8.685838 AAAACCTAGACTTGTTTATTGCTACA 57.314 30.769 0.00 0.00 33.76 2.74
227 228 7.668525 AACCTAGACTTGTTTATTGCTACAC 57.331 36.000 0.00 0.00 0.00 2.90
228 229 7.005709 ACCTAGACTTGTTTATTGCTACACT 57.994 36.000 0.00 0.00 0.00 3.55
229 230 7.450903 ACCTAGACTTGTTTATTGCTACACTT 58.549 34.615 0.00 0.00 0.00 3.16
230 231 7.387948 ACCTAGACTTGTTTATTGCTACACTTG 59.612 37.037 0.00 0.00 0.00 3.16
231 232 7.387948 CCTAGACTTGTTTATTGCTACACTTGT 59.612 37.037 0.00 0.00 0.00 3.16
232 233 6.959361 AGACTTGTTTATTGCTACACTTGTG 58.041 36.000 0.00 0.00 0.00 3.33
233 234 6.542370 AGACTTGTTTATTGCTACACTTGTGT 59.458 34.615 11.30 11.30 0.00 3.72
234 235 7.713507 AGACTTGTTTATTGCTACACTTGTGTA 59.286 33.333 12.31 12.31 0.00 2.90
235 236 7.636326 ACTTGTTTATTGCTACACTTGTGTAC 58.364 34.615 9.28 7.68 0.00 2.90
236 237 7.497909 ACTTGTTTATTGCTACACTTGTGTACT 59.502 33.333 9.28 0.00 0.00 2.73
237 238 7.184800 TGTTTATTGCTACACTTGTGTACTG 57.815 36.000 9.28 3.29 0.00 2.74
238 239 5.856126 TTATTGCTACACTTGTGTACTGC 57.144 39.130 9.28 12.21 0.00 4.40
239 240 2.900716 TGCTACACTTGTGTACTGCA 57.099 45.000 17.84 17.84 0.00 4.41
240 241 2.754472 TGCTACACTTGTGTACTGCAG 58.246 47.619 13.48 13.48 0.00 4.41
241 242 1.461127 GCTACACTTGTGTACTGCAGC 59.539 52.381 15.27 12.52 0.00 5.25
242 243 2.754472 CTACACTTGTGTACTGCAGCA 58.246 47.619 15.27 0.00 0.00 4.41
243 244 1.299541 ACACTTGTGTACTGCAGCAC 58.700 50.000 15.27 12.60 36.26 4.40
244 245 1.298602 CACTTGTGTACTGCAGCACA 58.701 50.000 15.95 15.95 42.95 4.57
245 246 1.003545 CACTTGTGTACTGCAGCACAC 60.004 52.381 33.94 33.94 44.12 3.82
246 247 1.134401 ACTTGTGTACTGCAGCACACT 60.134 47.619 37.37 22.81 44.12 3.55
247 248 1.262417 CTTGTGTACTGCAGCACACTG 59.738 52.381 37.37 28.67 44.12 3.66
248 249 0.177836 TGTGTACTGCAGCACACTGT 59.822 50.000 37.37 13.68 46.30 3.55
249 250 1.410882 TGTGTACTGCAGCACACTGTA 59.589 47.619 37.37 22.81 46.30 2.74
253 254 2.828145 TGCAGCACACTGTAGCCA 59.172 55.556 0.00 0.00 46.30 4.75
254 255 1.597854 TGCAGCACACTGTAGCCAC 60.598 57.895 0.00 0.00 46.30 5.01
255 256 1.597854 GCAGCACACTGTAGCCACA 60.598 57.895 1.37 0.00 46.30 4.17
256 257 1.165907 GCAGCACACTGTAGCCACAA 61.166 55.000 1.37 0.00 46.30 3.33
257 258 1.527034 CAGCACACTGTAGCCACAAT 58.473 50.000 1.37 0.00 39.22 2.71
258 259 1.198408 CAGCACACTGTAGCCACAATG 59.802 52.381 0.00 0.00 37.89 2.82
259 260 0.109597 GCACACTGTAGCCACAATGC 60.110 55.000 0.00 0.00 35.29 3.56
260 261 0.523072 CACACTGTAGCCACAATGCC 59.477 55.000 0.00 0.00 35.29 4.40
261 262 0.609131 ACACTGTAGCCACAATGCCC 60.609 55.000 0.00 0.00 35.29 5.36
262 263 0.322816 CACTGTAGCCACAATGCCCT 60.323 55.000 0.00 0.00 33.22 5.19
263 264 1.065491 CACTGTAGCCACAATGCCCTA 60.065 52.381 0.00 0.00 33.22 3.53
264 265 1.633432 ACTGTAGCCACAATGCCCTAA 59.367 47.619 0.00 0.00 33.22 2.69
265 266 2.041081 ACTGTAGCCACAATGCCCTAAA 59.959 45.455 0.00 0.00 33.22 1.85
266 267 2.684881 CTGTAGCCACAATGCCCTAAAG 59.315 50.000 0.00 0.00 33.22 1.85
267 268 1.405463 GTAGCCACAATGCCCTAAAGC 59.595 52.381 0.00 0.00 0.00 3.51
268 269 0.040204 AGCCACAATGCCCTAAAGCT 59.960 50.000 0.00 0.00 0.00 3.74
269 270 0.174162 GCCACAATGCCCTAAAGCTG 59.826 55.000 0.00 0.00 0.00 4.24
270 271 0.819582 CCACAATGCCCTAAAGCTGG 59.180 55.000 0.00 0.00 0.00 4.85
276 277 4.506255 CCCTAAAGCTGGCCCGGG 62.506 72.222 19.09 19.09 0.00 5.73
277 278 3.407967 CCTAAAGCTGGCCCGGGA 61.408 66.667 29.31 2.11 0.00 5.14
278 279 2.124695 CTAAAGCTGGCCCGGGAC 60.125 66.667 29.31 26.59 0.00 4.46
294 295 1.742268 GGGACGTACCGATATCCTAGC 59.258 57.143 0.00 0.00 40.11 3.42
295 296 2.617532 GGGACGTACCGATATCCTAGCT 60.618 54.545 0.00 0.00 40.11 3.32
296 297 3.369892 GGGACGTACCGATATCCTAGCTA 60.370 52.174 0.00 0.00 40.11 3.32
297 298 3.620821 GGACGTACCGATATCCTAGCTAC 59.379 52.174 0.00 0.00 0.00 3.58
298 299 3.257393 ACGTACCGATATCCTAGCTACG 58.743 50.000 0.00 4.41 33.44 3.51
299 300 3.257393 CGTACCGATATCCTAGCTACGT 58.743 50.000 0.00 0.00 0.00 3.57
300 301 3.681897 CGTACCGATATCCTAGCTACGTT 59.318 47.826 0.00 0.00 0.00 3.99
301 302 4.864806 CGTACCGATATCCTAGCTACGTTA 59.135 45.833 0.00 0.00 0.00 3.18
302 303 5.220303 CGTACCGATATCCTAGCTACGTTAC 60.220 48.000 0.00 0.00 0.00 2.50
303 304 4.904241 ACCGATATCCTAGCTACGTTACT 58.096 43.478 0.00 0.00 0.00 2.24
304 305 4.694509 ACCGATATCCTAGCTACGTTACTG 59.305 45.833 0.00 0.00 0.00 2.74
305 306 4.094590 CCGATATCCTAGCTACGTTACTGG 59.905 50.000 0.00 0.00 0.00 4.00
306 307 4.694509 CGATATCCTAGCTACGTTACTGGT 59.305 45.833 0.00 0.00 0.00 4.00
307 308 5.180868 CGATATCCTAGCTACGTTACTGGTT 59.819 44.000 0.00 0.00 0.00 3.67
308 309 6.369890 CGATATCCTAGCTACGTTACTGGTTA 59.630 42.308 0.00 0.00 0.00 2.85
309 310 7.065563 CGATATCCTAGCTACGTTACTGGTTAT 59.934 40.741 0.00 2.20 0.00 1.89
310 311 9.388506 GATATCCTAGCTACGTTACTGGTTATA 57.611 37.037 0.00 0.00 0.00 0.98
311 312 7.684937 ATCCTAGCTACGTTACTGGTTATAG 57.315 40.000 0.00 0.00 0.00 1.31
312 313 6.830912 TCCTAGCTACGTTACTGGTTATAGA 58.169 40.000 0.00 0.00 0.00 1.98
313 314 7.456725 TCCTAGCTACGTTACTGGTTATAGAT 58.543 38.462 0.00 0.00 0.00 1.98
314 315 7.389884 TCCTAGCTACGTTACTGGTTATAGATG 59.610 40.741 0.00 0.00 0.00 2.90
315 316 6.956202 AGCTACGTTACTGGTTATAGATGT 57.044 37.500 0.00 0.00 0.00 3.06
316 317 7.344095 AGCTACGTTACTGGTTATAGATGTT 57.656 36.000 0.00 0.00 0.00 2.71
331 332 4.287766 AGATGTTGTCCTCCTACCAAAC 57.712 45.455 0.00 0.00 0.00 2.93
347 348 0.951558 AAACCCACGATCTTGTGCAC 59.048 50.000 10.75 10.75 38.55 4.57
348 349 1.227999 AACCCACGATCTTGTGCACG 61.228 55.000 13.13 0.87 38.55 5.34
363 364 5.431420 TGTGCACGAAAATTACTCATGTT 57.569 34.783 13.13 0.00 0.00 2.71
369 370 6.801377 GCACGAAAATTACTCATGTTCATTCA 59.199 34.615 0.00 0.00 28.96 2.57
377 378 8.668510 ATTACTCATGTTCATTCACCTATGTC 57.331 34.615 0.00 0.00 0.00 3.06
378 379 5.111989 ACTCATGTTCATTCACCTATGTCG 58.888 41.667 0.00 0.00 0.00 4.35
379 380 3.871006 TCATGTTCATTCACCTATGTCGC 59.129 43.478 0.00 0.00 0.00 5.19
395 396 8.707839 ACCTATGTCGCAAAATTTAAAATGTTG 58.292 29.630 0.00 0.00 0.00 3.33
400 401 7.043059 TGTCGCAAAATTTAAAATGTTGTCTCC 60.043 33.333 0.00 0.00 0.00 3.71
401 402 6.422400 TCGCAAAATTTAAAATGTTGTCTCCC 59.578 34.615 0.00 0.00 0.00 4.30
424 425 5.888161 CCTGTAAATCTTGCAAAGGACCTAT 59.112 40.000 5.31 0.00 46.24 2.57
426 427 7.227512 CCTGTAAATCTTGCAAAGGACCTATAG 59.772 40.741 5.31 0.00 46.24 1.31
451 452 9.113838 AGTAATCGCTTAAAAATCATCAGTGAT 57.886 29.630 0.00 0.00 46.91 3.06
483 484 9.908152 CATGACCTTTCGTTATATATACACTCA 57.092 33.333 0.00 0.00 0.00 3.41
511 512 9.585099 TTTTCAATCATAAACCATGCAATAGAC 57.415 29.630 0.00 0.00 34.35 2.59
562 563 6.561737 TTCTAAGCCAGTAGTATCTCATCG 57.438 41.667 0.00 0.00 0.00 3.84
563 564 5.622180 TCTAAGCCAGTAGTATCTCATCGT 58.378 41.667 0.00 0.00 0.00 3.73
564 565 4.839668 AAGCCAGTAGTATCTCATCGTC 57.160 45.455 0.00 0.00 0.00 4.20
565 566 2.809119 AGCCAGTAGTATCTCATCGTCG 59.191 50.000 0.00 0.00 0.00 5.12
568 569 4.774586 CCAGTAGTATCTCATCGTCGTTC 58.225 47.826 0.00 0.00 0.00 3.95
569 570 4.447119 CAGTAGTATCTCATCGTCGTTCG 58.553 47.826 0.00 0.00 41.41 3.95
667 1325 5.350091 GCGAATAGGATCTTGGCTTTATCTC 59.650 44.000 0.00 0.00 0.00 2.75
668 1326 6.696411 CGAATAGGATCTTGGCTTTATCTCT 58.304 40.000 0.00 0.00 0.00 3.10
669 1327 7.158021 CGAATAGGATCTTGGCTTTATCTCTT 58.842 38.462 0.00 0.00 0.00 2.85
671 1329 5.303259 AGGATCTTGGCTTTATCTCTTCC 57.697 43.478 0.00 0.00 0.00 3.46
673 1331 5.192522 AGGATCTTGGCTTTATCTCTTCCAA 59.807 40.000 0.00 0.00 35.70 3.53
674 1332 6.067350 GGATCTTGGCTTTATCTCTTCCAAT 58.933 40.000 0.00 0.00 36.37 3.16
689 1350 7.795047 TCTCTTCCAATATCACAAGATGCTTA 58.205 34.615 0.00 0.00 35.67 3.09
691 1352 6.994496 TCTTCCAATATCACAAGATGCTTAGG 59.006 38.462 0.00 0.00 35.67 2.69
703 1364 6.320672 ACAAGATGCTTAGGAATTTGGAGATG 59.679 38.462 5.82 0.00 0.00 2.90
712 1376 4.340381 AGGAATTTGGAGATGCATACAAGC 59.660 41.667 0.00 0.28 0.00 4.01
714 1378 5.163478 GGAATTTGGAGATGCATACAAGCTT 60.163 40.000 0.00 0.00 34.99 3.74
738 1452 1.066152 GGAAATTTGGCGAGGATGCTC 59.934 52.381 3.74 3.74 34.52 4.26
741 1455 2.947938 ATTTGGCGAGGATGCTCGGG 62.948 60.000 33.35 11.38 45.88 5.14
1491 2683 0.613260 ATGGCTACGGTGAGCAGAAA 59.387 50.000 8.27 0.00 44.76 2.52
1514 2715 1.971505 TATGGAGCTGAAGCCCACCG 61.972 60.000 12.78 0.00 41.69 4.94
1602 2803 2.128729 GGTCCAGAAGAGCGGCTAT 58.871 57.895 0.60 0.00 32.33 2.97
1803 3079 0.536006 ACAGCAAGGTCCAGAAGCAC 60.536 55.000 0.00 0.00 0.00 4.40
1877 3219 3.156334 GCACAAGGCGTACGACAG 58.844 61.111 25.52 17.79 0.00 3.51
1878 3220 3.011760 GCACAAGGCGTACGACAGC 62.012 63.158 25.52 17.27 0.00 4.40
1879 3221 2.430244 ACAAGGCGTACGACAGCG 60.430 61.111 25.52 13.35 44.79 5.18
1886 3228 4.409218 GTACGACAGCGCGGTCCA 62.409 66.667 30.40 18.19 42.48 4.02
1887 3229 4.111016 TACGACAGCGCGGTCCAG 62.111 66.667 30.40 21.20 42.48 3.86
1889 3231 4.717629 CGACAGCGCGGTCCAGAA 62.718 66.667 30.40 0.00 34.24 3.02
1890 3232 3.112709 GACAGCGCGGTCCAGAAC 61.113 66.667 27.41 4.21 0.00 3.01
1891 3233 4.681978 ACAGCGCGGTCCAGAACC 62.682 66.667 8.38 0.00 45.45 3.62
1900 3242 2.533318 GTCCAGAACCAGAAGCACG 58.467 57.895 0.00 0.00 0.00 5.34
1901 3243 0.951040 GTCCAGAACCAGAAGCACGG 60.951 60.000 0.00 0.00 0.00 4.94
1902 3244 2.328099 CCAGAACCAGAAGCACGGC 61.328 63.158 0.00 0.00 0.00 5.68
1903 3245 1.302033 CAGAACCAGAAGCACGGCT 60.302 57.895 0.00 0.00 42.56 5.52
1904 3246 0.037326 CAGAACCAGAAGCACGGCTA 60.037 55.000 0.00 0.00 38.25 3.93
1905 3247 0.037232 AGAACCAGAAGCACGGCTAC 60.037 55.000 0.00 0.00 38.25 3.58
1907 3249 2.509336 CCAGAAGCACGGCTACGG 60.509 66.667 0.00 0.00 46.48 4.02
2136 3508 3.688159 GTCCACCACGGCTACGGT 61.688 66.667 0.00 0.00 46.48 4.83
2206 3578 2.818274 CTTTCCAGTACGGCGGCC 60.818 66.667 13.24 9.54 33.14 6.13
2271 3682 1.404315 GGGTACGACTCTGCTTTCCAG 60.404 57.143 0.00 0.00 43.17 3.86
2361 3847 1.075425 CGCTCGTCCAGAAGAAGCAG 61.075 60.000 0.00 0.00 0.00 4.24
2447 3942 2.101582 GGTATGATGCTCTTGTCCGACT 59.898 50.000 0.00 0.00 0.00 4.18
3033 4621 0.109342 CCATGTACAGATCTGGCCCC 59.891 60.000 26.08 11.17 34.19 5.80
3270 4861 0.903454 ACCGTCCTCTTACCTGTGGG 60.903 60.000 0.00 0.00 38.88 4.61
3275 4866 3.682292 CTCTTACCTGTGGGGCGCC 62.682 68.421 21.18 21.18 39.10 6.53
3289 4880 3.022287 CGCCGTCAAGCAAGTGTT 58.978 55.556 0.00 0.00 0.00 3.32
3296 4887 4.242475 CCGTCAAGCAAGTGTTGAGTATA 58.758 43.478 0.00 0.00 34.59 1.47
3299 4890 5.176774 CGTCAAGCAAGTGTTGAGTATAACA 59.823 40.000 0.00 0.00 38.17 2.41
3300 4891 6.128553 CGTCAAGCAAGTGTTGAGTATAACAT 60.129 38.462 0.00 0.00 42.02 2.71
3301 4892 7.017645 GTCAAGCAAGTGTTGAGTATAACATG 58.982 38.462 0.00 0.00 42.02 3.21
3310 4901 9.424319 AGTGTTGAGTATAACATGAAGTGTAAG 57.576 33.333 0.00 0.00 42.02 2.34
3311 4902 8.656849 GTGTTGAGTATAACATGAAGTGTAAGG 58.343 37.037 0.00 0.00 42.02 2.69
3313 4904 6.941857 TGAGTATAACATGAAGTGTAAGGCA 58.058 36.000 0.00 0.00 41.14 4.75
3314 4905 7.564793 TGAGTATAACATGAAGTGTAAGGCAT 58.435 34.615 0.00 0.00 41.14 4.40
3317 4916 9.899661 AGTATAACATGAAGTGTAAGGCATAAA 57.100 29.630 0.00 0.00 41.14 1.40
3320 4919 6.455360 ACATGAAGTGTAAGGCATAAATGG 57.545 37.500 0.00 0.00 39.91 3.16
3321 4920 6.186957 ACATGAAGTGTAAGGCATAAATGGA 58.813 36.000 0.00 0.00 39.91 3.41
3566 5167 3.744940 ACACCCTGATGAACAATCCAT 57.255 42.857 0.00 0.00 34.00 3.41
3590 5191 5.916318 TGAGCATCAACAACTCCAATTTTT 58.084 33.333 0.00 0.00 45.97 1.94
3612 5213 3.879998 TCATGAGCCGGCTGTTTAATTA 58.120 40.909 38.41 4.79 0.00 1.40
3615 5216 4.695217 TGAGCCGGCTGTTTAATTAAAG 57.305 40.909 38.41 1.96 0.00 1.85
3624 5225 7.326063 CCGGCTGTTTAATTAAAGAAAAGAGTG 59.674 37.037 10.92 0.00 0.00 3.51
3651 5252 5.474578 AGTTTCAGCTCAGTAAGACATGA 57.525 39.130 0.00 0.00 0.00 3.07
3680 5281 4.280677 TGGGAAAAGCATGTAAAGTGAAGG 59.719 41.667 0.00 0.00 0.00 3.46
3731 5332 8.450964 GTTATTGTCGATATAATTGTGGATGGG 58.549 37.037 6.32 0.00 0.00 4.00
3732 5333 4.323417 TGTCGATATAATTGTGGATGGGC 58.677 43.478 0.00 0.00 0.00 5.36
3733 5334 4.041567 TGTCGATATAATTGTGGATGGGCT 59.958 41.667 0.00 0.00 0.00 5.19
3734 5335 5.247337 TGTCGATATAATTGTGGATGGGCTA 59.753 40.000 0.00 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 9.932207 TGATTTGAGTTGAAATCTTATGCATTT 57.068 25.926 3.54 0.00 41.21 2.32
26 27 9.745880 GATGATTTGAGTTGAAATCTTATGCAT 57.254 29.630 3.79 3.79 41.21 3.96
27 28 7.911727 CGATGATTTGAGTTGAAATCTTATGCA 59.088 33.333 0.00 0.00 41.21 3.96
28 29 7.912250 ACGATGATTTGAGTTGAAATCTTATGC 59.088 33.333 0.00 0.00 41.21 3.14
29 30 9.430838 GACGATGATTTGAGTTGAAATCTTATG 57.569 33.333 0.00 0.00 41.21 1.90
30 31 9.388506 AGACGATGATTTGAGTTGAAATCTTAT 57.611 29.630 0.00 0.00 41.21 1.73
31 32 8.777865 AGACGATGATTTGAGTTGAAATCTTA 57.222 30.769 0.00 0.00 41.21 2.10
32 33 7.678947 AGACGATGATTTGAGTTGAAATCTT 57.321 32.000 0.00 0.00 41.21 2.40
33 34 7.678947 AAGACGATGATTTGAGTTGAAATCT 57.321 32.000 0.00 0.00 41.21 2.40
34 35 9.994432 ATAAAGACGATGATTTGAGTTGAAATC 57.006 29.630 0.00 0.00 41.07 2.17
64 65 9.354673 TGGAAAATTTGATTGAGTAGAGAAGTT 57.645 29.630 0.00 0.00 0.00 2.66
65 66 8.924511 TGGAAAATTTGATTGAGTAGAGAAGT 57.075 30.769 0.00 0.00 0.00 3.01
66 67 9.837525 CTTGGAAAATTTGATTGAGTAGAGAAG 57.162 33.333 0.00 0.00 0.00 2.85
67 68 9.354673 ACTTGGAAAATTTGATTGAGTAGAGAA 57.645 29.630 0.00 0.00 0.00 2.87
68 69 8.924511 ACTTGGAAAATTTGATTGAGTAGAGA 57.075 30.769 0.00 0.00 0.00 3.10
69 70 9.617975 GAACTTGGAAAATTTGATTGAGTAGAG 57.382 33.333 0.00 0.00 0.00 2.43
70 71 9.354673 AGAACTTGGAAAATTTGATTGAGTAGA 57.645 29.630 0.00 0.00 0.00 2.59
76 77 9.859427 TGCTATAGAACTTGGAAAATTTGATTG 57.141 29.630 3.21 0.00 0.00 2.67
79 80 9.241919 TCATGCTATAGAACTTGGAAAATTTGA 57.758 29.630 3.21 0.00 0.00 2.69
80 81 9.859427 TTCATGCTATAGAACTTGGAAAATTTG 57.141 29.630 3.21 0.00 0.00 2.32
83 84 9.466497 TCTTTCATGCTATAGAACTTGGAAAAT 57.534 29.630 3.21 0.00 0.00 1.82
84 85 8.862325 TCTTTCATGCTATAGAACTTGGAAAA 57.138 30.769 3.21 0.00 0.00 2.29
85 86 8.862325 TTCTTTCATGCTATAGAACTTGGAAA 57.138 30.769 3.21 1.85 0.00 3.13
86 87 8.321353 TCTTCTTTCATGCTATAGAACTTGGAA 58.679 33.333 3.21 0.00 0.00 3.53
87 88 7.851228 TCTTCTTTCATGCTATAGAACTTGGA 58.149 34.615 3.21 0.00 0.00 3.53
88 89 7.984050 TCTCTTCTTTCATGCTATAGAACTTGG 59.016 37.037 3.21 0.00 0.00 3.61
89 90 8.939201 TCTCTTCTTTCATGCTATAGAACTTG 57.061 34.615 3.21 0.00 0.00 3.16
90 91 8.976353 TCTCTCTTCTTTCATGCTATAGAACTT 58.024 33.333 3.21 0.00 0.00 2.66
91 92 8.532186 TCTCTCTTCTTTCATGCTATAGAACT 57.468 34.615 3.21 0.00 0.00 3.01
92 93 7.867403 CCTCTCTCTTCTTTCATGCTATAGAAC 59.133 40.741 3.21 0.00 0.00 3.01
93 94 7.782168 TCCTCTCTCTTCTTTCATGCTATAGAA 59.218 37.037 3.21 0.00 0.00 2.10
94 95 7.230510 GTCCTCTCTCTTCTTTCATGCTATAGA 59.769 40.741 3.21 0.00 0.00 1.98
95 96 7.014134 TGTCCTCTCTCTTCTTTCATGCTATAG 59.986 40.741 0.00 0.00 0.00 1.31
96 97 6.836007 TGTCCTCTCTCTTCTTTCATGCTATA 59.164 38.462 0.00 0.00 0.00 1.31
97 98 5.660417 TGTCCTCTCTCTTCTTTCATGCTAT 59.340 40.000 0.00 0.00 0.00 2.97
98 99 5.019470 TGTCCTCTCTCTTCTTTCATGCTA 58.981 41.667 0.00 0.00 0.00 3.49
99 100 3.837146 TGTCCTCTCTCTTCTTTCATGCT 59.163 43.478 0.00 0.00 0.00 3.79
100 101 3.932089 GTGTCCTCTCTCTTCTTTCATGC 59.068 47.826 0.00 0.00 0.00 4.06
101 102 5.144692 TGTGTCCTCTCTCTTCTTTCATG 57.855 43.478 0.00 0.00 0.00 3.07
102 103 5.815233 TTGTGTCCTCTCTCTTCTTTCAT 57.185 39.130 0.00 0.00 0.00 2.57
103 104 5.305386 TCATTGTGTCCTCTCTCTTCTTTCA 59.695 40.000 0.00 0.00 0.00 2.69
104 105 5.788450 TCATTGTGTCCTCTCTCTTCTTTC 58.212 41.667 0.00 0.00 0.00 2.62
105 106 5.815233 TCATTGTGTCCTCTCTCTTCTTT 57.185 39.130 0.00 0.00 0.00 2.52
106 107 5.815233 TTCATTGTGTCCTCTCTCTTCTT 57.185 39.130 0.00 0.00 0.00 2.52
107 108 6.371595 AATTCATTGTGTCCTCTCTCTTCT 57.628 37.500 0.00 0.00 0.00 2.85
108 109 6.652481 TGAAATTCATTGTGTCCTCTCTCTTC 59.348 38.462 0.00 0.00 0.00 2.87
109 110 6.537355 TGAAATTCATTGTGTCCTCTCTCTT 58.463 36.000 0.00 0.00 0.00 2.85
110 111 6.119240 TGAAATTCATTGTGTCCTCTCTCT 57.881 37.500 0.00 0.00 0.00 3.10
111 112 6.606768 GTTGAAATTCATTGTGTCCTCTCTC 58.393 40.000 0.00 0.00 0.00 3.20
112 113 5.180117 CGTTGAAATTCATTGTGTCCTCTCT 59.820 40.000 0.00 0.00 0.00 3.10
113 114 5.179368 TCGTTGAAATTCATTGTGTCCTCTC 59.821 40.000 0.00 0.00 0.00 3.20
114 115 5.063204 TCGTTGAAATTCATTGTGTCCTCT 58.937 37.500 0.00 0.00 0.00 3.69
115 116 5.356882 TCGTTGAAATTCATTGTGTCCTC 57.643 39.130 0.00 0.00 0.00 3.71
116 117 4.216257 CCTCGTTGAAATTCATTGTGTCCT 59.784 41.667 0.00 0.00 0.00 3.85
117 118 4.023193 ACCTCGTTGAAATTCATTGTGTCC 60.023 41.667 0.00 0.00 0.00 4.02
118 119 5.108385 ACCTCGTTGAAATTCATTGTGTC 57.892 39.130 0.00 0.00 0.00 3.67
119 120 4.578516 TGACCTCGTTGAAATTCATTGTGT 59.421 37.500 0.00 0.00 0.00 3.72
120 121 5.107109 TGACCTCGTTGAAATTCATTGTG 57.893 39.130 0.00 0.00 0.00 3.33
121 122 5.964958 ATGACCTCGTTGAAATTCATTGT 57.035 34.783 0.00 0.00 0.00 2.71
122 123 7.148423 TGTCTATGACCTCGTTGAAATTCATTG 60.148 37.037 0.00 0.00 0.00 2.82
123 124 6.878923 TGTCTATGACCTCGTTGAAATTCATT 59.121 34.615 0.00 0.00 0.00 2.57
124 125 6.406370 TGTCTATGACCTCGTTGAAATTCAT 58.594 36.000 0.00 0.00 0.00 2.57
125 126 5.789521 TGTCTATGACCTCGTTGAAATTCA 58.210 37.500 0.00 0.00 0.00 2.57
126 127 6.238211 CCATGTCTATGACCTCGTTGAAATTC 60.238 42.308 0.00 0.00 36.36 2.17
127 128 5.586243 CCATGTCTATGACCTCGTTGAAATT 59.414 40.000 0.00 0.00 36.36 1.82
128 129 5.118990 CCATGTCTATGACCTCGTTGAAAT 58.881 41.667 0.00 0.00 36.36 2.17
129 130 4.503910 CCATGTCTATGACCTCGTTGAAA 58.496 43.478 0.00 0.00 36.36 2.69
130 131 3.118775 CCCATGTCTATGACCTCGTTGAA 60.119 47.826 0.00 0.00 36.36 2.69
131 132 2.430694 CCCATGTCTATGACCTCGTTGA 59.569 50.000 0.00 0.00 36.36 3.18
132 133 2.826428 CCCATGTCTATGACCTCGTTG 58.174 52.381 0.00 0.00 36.36 4.10
133 134 1.139058 GCCCATGTCTATGACCTCGTT 59.861 52.381 0.00 0.00 36.36 3.85
134 135 0.753262 GCCCATGTCTATGACCTCGT 59.247 55.000 0.00 0.00 36.36 4.18
135 136 0.319040 CGCCCATGTCTATGACCTCG 60.319 60.000 0.00 0.00 36.36 4.63
136 137 0.753262 ACGCCCATGTCTATGACCTC 59.247 55.000 0.00 0.00 36.36 3.85
137 138 1.964223 CTACGCCCATGTCTATGACCT 59.036 52.381 0.00 0.00 36.36 3.85
138 139 1.961394 TCTACGCCCATGTCTATGACC 59.039 52.381 0.00 0.00 36.36 4.02
139 140 2.361119 TGTCTACGCCCATGTCTATGAC 59.639 50.000 0.00 0.00 36.36 3.06
140 141 2.623416 CTGTCTACGCCCATGTCTATGA 59.377 50.000 0.00 0.00 36.36 2.15
141 142 2.288457 CCTGTCTACGCCCATGTCTATG 60.288 54.545 0.00 0.00 0.00 2.23
142 143 1.964223 CCTGTCTACGCCCATGTCTAT 59.036 52.381 0.00 0.00 0.00 1.98
143 144 1.399714 CCTGTCTACGCCCATGTCTA 58.600 55.000 0.00 0.00 0.00 2.59
144 145 1.961180 GCCTGTCTACGCCCATGTCT 61.961 60.000 0.00 0.00 0.00 3.41
145 146 1.521681 GCCTGTCTACGCCCATGTC 60.522 63.158 0.00 0.00 0.00 3.06
146 147 2.584608 GCCTGTCTACGCCCATGT 59.415 61.111 0.00 0.00 0.00 3.21
147 148 2.203070 GGCCTGTCTACGCCCATG 60.203 66.667 0.00 0.00 39.39 3.66
151 152 4.162690 CTGGGGCCTGTCTACGCC 62.163 72.222 0.84 0.00 44.92 5.68
152 153 4.162690 CCTGGGGCCTGTCTACGC 62.163 72.222 0.84 0.00 0.00 4.42
153 154 4.162690 GCCTGGGGCCTGTCTACG 62.163 72.222 0.84 0.00 44.06 3.51
186 187 3.256824 TTTTACCCTCACGCCCCGG 62.257 63.158 0.00 0.00 0.00 5.73
187 188 2.036571 GTTTTACCCTCACGCCCCG 61.037 63.158 0.00 0.00 0.00 5.73
188 189 1.676635 GGTTTTACCCTCACGCCCC 60.677 63.158 0.00 0.00 30.04 5.80
189 190 0.614812 TAGGTTTTACCCTCACGCCC 59.385 55.000 0.00 0.00 39.75 6.13
190 191 1.551883 TCTAGGTTTTACCCTCACGCC 59.448 52.381 0.00 0.00 39.75 5.68
191 192 2.233186 AGTCTAGGTTTTACCCTCACGC 59.767 50.000 0.00 0.00 39.75 5.34
192 193 4.243270 CAAGTCTAGGTTTTACCCTCACG 58.757 47.826 0.00 0.00 39.75 4.35
193 194 5.224821 ACAAGTCTAGGTTTTACCCTCAC 57.775 43.478 0.00 0.00 39.75 3.51
194 195 5.899631 AACAAGTCTAGGTTTTACCCTCA 57.100 39.130 0.00 0.00 39.75 3.86
195 196 8.727910 CAATAAACAAGTCTAGGTTTTACCCTC 58.272 37.037 7.60 0.00 39.75 4.30
196 197 7.176165 GCAATAAACAAGTCTAGGTTTTACCCT 59.824 37.037 7.60 0.00 39.75 4.34
197 198 7.176165 AGCAATAAACAAGTCTAGGTTTTACCC 59.824 37.037 7.60 0.00 39.75 3.69
198 199 8.107399 AGCAATAAACAAGTCTAGGTTTTACC 57.893 34.615 7.60 0.00 38.17 2.85
200 201 9.781633 TGTAGCAATAAACAAGTCTAGGTTTTA 57.218 29.630 7.60 0.00 38.17 1.52
201 202 8.565416 GTGTAGCAATAAACAAGTCTAGGTTTT 58.435 33.333 7.60 0.00 38.17 2.43
202 203 7.937394 AGTGTAGCAATAAACAAGTCTAGGTTT 59.063 33.333 7.47 7.47 40.15 3.27
203 204 7.450903 AGTGTAGCAATAAACAAGTCTAGGTT 58.549 34.615 0.00 0.00 0.00 3.50
204 205 7.005709 AGTGTAGCAATAAACAAGTCTAGGT 57.994 36.000 0.00 0.00 0.00 3.08
205 206 7.387948 ACAAGTGTAGCAATAAACAAGTCTAGG 59.612 37.037 0.00 0.00 0.00 3.02
206 207 8.223769 CACAAGTGTAGCAATAAACAAGTCTAG 58.776 37.037 0.00 0.00 0.00 2.43
207 208 7.713507 ACACAAGTGTAGCAATAAACAAGTCTA 59.286 33.333 3.64 0.00 42.90 2.59
208 209 6.542370 ACACAAGTGTAGCAATAAACAAGTCT 59.458 34.615 3.64 0.00 42.90 3.24
209 210 6.725246 ACACAAGTGTAGCAATAAACAAGTC 58.275 36.000 3.64 0.00 42.90 3.01
210 211 6.693315 ACACAAGTGTAGCAATAAACAAGT 57.307 33.333 3.64 0.00 42.90 3.16
211 212 7.798516 CAGTACACAAGTGTAGCAATAAACAAG 59.201 37.037 12.96 0.00 45.61 3.16
212 213 7.635423 CAGTACACAAGTGTAGCAATAAACAA 58.365 34.615 12.96 0.00 45.61 2.83
213 214 6.293190 GCAGTACACAAGTGTAGCAATAAACA 60.293 38.462 12.96 0.00 45.61 2.83
214 215 6.077838 GCAGTACACAAGTGTAGCAATAAAC 58.922 40.000 12.96 2.41 45.61 2.01
215 216 5.760743 TGCAGTACACAAGTGTAGCAATAAA 59.239 36.000 18.89 2.70 45.61 1.40
216 217 5.301555 TGCAGTACACAAGTGTAGCAATAA 58.698 37.500 18.89 2.98 45.61 1.40
217 218 4.888917 TGCAGTACACAAGTGTAGCAATA 58.111 39.130 18.89 3.25 45.61 1.90
218 219 3.738982 TGCAGTACACAAGTGTAGCAAT 58.261 40.909 18.89 4.08 45.61 3.56
219 220 3.130633 CTGCAGTACACAAGTGTAGCAA 58.869 45.455 20.51 10.29 45.61 3.91
220 221 2.754472 CTGCAGTACACAAGTGTAGCA 58.246 47.619 19.56 19.56 45.61 3.49
222 223 2.476619 GTGCTGCAGTACACAAGTGTAG 59.523 50.000 27.47 4.73 45.61 2.74
223 224 2.159028 TGTGCTGCAGTACACAAGTGTA 60.159 45.455 30.56 8.30 43.48 2.90
224 225 1.299541 GTGCTGCAGTACACAAGTGT 58.700 50.000 27.47 11.00 46.87 3.55
225 226 1.298602 TGTGCTGCAGTACACAAGTG 58.701 50.000 30.56 0.00 43.48 3.16
226 227 3.778619 TGTGCTGCAGTACACAAGT 57.221 47.368 30.56 0.00 43.48 3.16
231 232 1.605457 GCTACAGTGTGCTGCAGTACA 60.605 52.381 30.56 30.56 46.30 2.90
232 233 1.071605 GCTACAGTGTGCTGCAGTAC 58.928 55.000 26.02 26.02 46.30 2.73
233 234 0.037326 GGCTACAGTGTGCTGCAGTA 60.037 55.000 16.64 8.31 46.30 2.74
234 235 1.302033 GGCTACAGTGTGCTGCAGT 60.302 57.895 16.64 0.00 46.30 4.40
235 236 1.301953 TGGCTACAGTGTGCTGCAG 60.302 57.895 10.11 10.11 46.30 4.41
236 237 1.597854 GTGGCTACAGTGTGCTGCA 60.598 57.895 5.88 0.00 46.30 4.41
237 238 1.165907 TTGTGGCTACAGTGTGCTGC 61.166 55.000 5.88 7.56 46.30 5.25
238 239 4.575812 GCATTGTGGCTACAGTGTGCTG 62.576 54.545 23.24 8.49 43.93 4.41
239 240 1.527034 CATTGTGGCTACAGTGTGCT 58.473 50.000 16.18 0.00 39.07 4.40
240 241 0.109597 GCATTGTGGCTACAGTGTGC 60.110 55.000 23.24 19.86 43.93 4.57
241 242 0.523072 GGCATTGTGGCTACAGTGTG 59.477 55.000 23.24 15.14 43.93 3.82
242 243 0.609131 GGGCATTGTGGCTACAGTGT 60.609 55.000 23.24 0.00 43.93 3.55
243 244 0.322816 AGGGCATTGTGGCTACAGTG 60.323 55.000 19.42 19.42 44.61 3.66
244 245 1.285280 TAGGGCATTGTGGCTACAGT 58.715 50.000 2.22 0.00 43.20 3.55
245 246 2.418368 TTAGGGCATTGTGGCTACAG 57.582 50.000 2.22 0.00 43.20 2.74
246 247 2.722094 CTTTAGGGCATTGTGGCTACA 58.278 47.619 0.00 0.00 43.20 2.74
247 248 1.405463 GCTTTAGGGCATTGTGGCTAC 59.595 52.381 3.50 0.00 43.20 3.58
248 249 1.284785 AGCTTTAGGGCATTGTGGCTA 59.715 47.619 3.50 0.00 43.20 3.93
249 250 0.040204 AGCTTTAGGGCATTGTGGCT 59.960 50.000 3.50 0.00 43.20 4.75
250 251 0.174162 CAGCTTTAGGGCATTGTGGC 59.826 55.000 0.00 0.00 42.88 5.01
251 252 0.819582 CCAGCTTTAGGGCATTGTGG 59.180 55.000 0.00 0.00 34.17 4.17
259 260 4.506255 CCCGGGCCAGCTTTAGGG 62.506 72.222 8.08 0.00 0.00 3.53
260 261 3.407967 TCCCGGGCCAGCTTTAGG 61.408 66.667 18.49 0.00 0.00 2.69
261 262 2.124695 GTCCCGGGCCAGCTTTAG 60.125 66.667 18.49 0.00 0.00 1.85
262 263 4.090588 CGTCCCGGGCCAGCTTTA 62.091 66.667 18.49 0.00 0.00 1.85
279 280 5.872070 AGTAACGTAGCTAGGATATCGGTAC 59.128 44.000 19.82 17.45 40.30 3.34
280 281 5.871524 CAGTAACGTAGCTAGGATATCGGTA 59.128 44.000 19.82 6.64 0.00 4.02
281 282 4.694509 CAGTAACGTAGCTAGGATATCGGT 59.305 45.833 19.82 7.66 0.00 4.69
282 283 4.094590 CCAGTAACGTAGCTAGGATATCGG 59.905 50.000 19.82 12.11 0.00 4.18
283 284 4.694509 ACCAGTAACGTAGCTAGGATATCG 59.305 45.833 19.82 8.90 0.00 2.92
284 285 6.572167 AACCAGTAACGTAGCTAGGATATC 57.428 41.667 19.82 7.56 0.00 1.63
285 286 9.393512 CTATAACCAGTAACGTAGCTAGGATAT 57.606 37.037 19.82 9.92 0.00 1.63
286 287 8.597167 TCTATAACCAGTAACGTAGCTAGGATA 58.403 37.037 19.82 9.70 0.00 2.59
287 288 7.456725 TCTATAACCAGTAACGTAGCTAGGAT 58.543 38.462 19.82 10.74 0.00 3.24
288 289 6.830912 TCTATAACCAGTAACGTAGCTAGGA 58.169 40.000 19.82 0.00 0.00 2.94
289 290 7.174599 ACATCTATAACCAGTAACGTAGCTAGG 59.825 40.741 11.82 11.82 0.00 3.02
290 291 8.097078 ACATCTATAACCAGTAACGTAGCTAG 57.903 38.462 0.00 0.00 0.00 3.42
291 292 8.347771 CAACATCTATAACCAGTAACGTAGCTA 58.652 37.037 0.00 0.00 0.00 3.32
292 293 6.956202 ACATCTATAACCAGTAACGTAGCT 57.044 37.500 0.00 0.00 0.00 3.32
293 294 6.976925 ACAACATCTATAACCAGTAACGTAGC 59.023 38.462 0.00 0.00 0.00 3.58
294 295 7.646922 GGACAACATCTATAACCAGTAACGTAG 59.353 40.741 0.00 0.00 0.00 3.51
295 296 7.340232 AGGACAACATCTATAACCAGTAACGTA 59.660 37.037 0.00 0.00 0.00 3.57
296 297 6.154021 AGGACAACATCTATAACCAGTAACGT 59.846 38.462 0.00 0.00 0.00 3.99
297 298 6.570692 AGGACAACATCTATAACCAGTAACG 58.429 40.000 0.00 0.00 0.00 3.18
298 299 6.985059 GGAGGACAACATCTATAACCAGTAAC 59.015 42.308 0.00 0.00 0.00 2.50
299 300 6.901300 AGGAGGACAACATCTATAACCAGTAA 59.099 38.462 0.00 0.00 0.00 2.24
300 301 6.441222 AGGAGGACAACATCTATAACCAGTA 58.559 40.000 0.00 0.00 0.00 2.74
301 302 5.281314 AGGAGGACAACATCTATAACCAGT 58.719 41.667 0.00 0.00 0.00 4.00
302 303 5.878406 AGGAGGACAACATCTATAACCAG 57.122 43.478 0.00 0.00 0.00 4.00
303 304 5.601313 GGTAGGAGGACAACATCTATAACCA 59.399 44.000 0.00 0.00 0.00 3.67
304 305 5.601313 TGGTAGGAGGACAACATCTATAACC 59.399 44.000 0.00 0.00 0.00 2.85
305 306 6.726490 TGGTAGGAGGACAACATCTATAAC 57.274 41.667 0.00 0.00 0.00 1.89
306 307 7.365295 GGTTTGGTAGGAGGACAACATCTATAA 60.365 40.741 0.00 0.00 0.00 0.98
307 308 6.099269 GGTTTGGTAGGAGGACAACATCTATA 59.901 42.308 0.00 0.00 0.00 1.31
308 309 5.104485 GGTTTGGTAGGAGGACAACATCTAT 60.104 44.000 0.00 0.00 0.00 1.98
309 310 4.224370 GGTTTGGTAGGAGGACAACATCTA 59.776 45.833 0.00 0.00 0.00 1.98
310 311 3.009143 GGTTTGGTAGGAGGACAACATCT 59.991 47.826 0.00 0.00 0.00 2.90
311 312 3.344515 GGTTTGGTAGGAGGACAACATC 58.655 50.000 0.00 0.00 0.00 3.06
312 313 2.041216 GGGTTTGGTAGGAGGACAACAT 59.959 50.000 0.00 0.00 0.00 2.71
313 314 1.422402 GGGTTTGGTAGGAGGACAACA 59.578 52.381 0.00 0.00 0.00 3.33
314 315 1.422402 TGGGTTTGGTAGGAGGACAAC 59.578 52.381 0.00 0.00 0.00 3.32
315 316 1.422402 GTGGGTTTGGTAGGAGGACAA 59.578 52.381 0.00 0.00 0.00 3.18
316 317 1.061546 GTGGGTTTGGTAGGAGGACA 58.938 55.000 0.00 0.00 0.00 4.02
331 332 0.948623 TTCGTGCACAAGATCGTGGG 60.949 55.000 18.64 10.16 37.37 4.61
347 348 7.530010 AGGTGAATGAACATGAGTAATTTTCG 58.470 34.615 0.00 0.00 29.02 3.46
363 364 5.895636 AATTTTGCGACATAGGTGAATGA 57.104 34.783 0.00 0.00 0.00 2.57
369 370 8.707839 CAACATTTTAAATTTTGCGACATAGGT 58.292 29.630 4.02 0.00 0.00 3.08
377 378 6.423604 AGGGAGACAACATTTTAAATTTTGCG 59.576 34.615 14.23 0.00 0.00 4.85
378 379 7.226523 ACAGGGAGACAACATTTTAAATTTTGC 59.773 33.333 14.23 8.77 0.00 3.68
379 380 8.661352 ACAGGGAGACAACATTTTAAATTTTG 57.339 30.769 13.11 13.11 0.00 2.44
395 396 4.156739 CCTTTGCAAGATTTACAGGGAGAC 59.843 45.833 0.00 0.00 0.00 3.36
400 401 4.082125 AGGTCCTTTGCAAGATTTACAGG 58.918 43.478 0.00 1.61 0.00 4.00
401 402 7.770897 ACTATAGGTCCTTTGCAAGATTTACAG 59.229 37.037 4.43 0.00 0.00 2.74
424 425 9.594478 TCACTGATGATTTTTAAGCGATTACTA 57.406 29.630 0.00 0.00 0.00 1.82
444 445 5.408299 CGAAAGGTCATGTTGTAATCACTGA 59.592 40.000 0.00 0.00 0.00 3.41
475 476 9.295825 TGGTTTATGATTGAAAACTGAGTGTAT 57.704 29.630 0.00 0.00 36.17 2.29
479 480 7.092716 GCATGGTTTATGATTGAAAACTGAGT 58.907 34.615 0.00 0.00 39.21 3.41
483 484 9.590451 CTATTGCATGGTTTATGATTGAAAACT 57.410 29.630 0.00 0.00 39.21 2.66
484 485 9.585099 TCTATTGCATGGTTTATGATTGAAAAC 57.415 29.630 0.00 0.00 39.21 2.43
489 490 6.728200 ACGTCTATTGCATGGTTTATGATTG 58.272 36.000 0.00 0.00 39.21 2.67
491 492 7.931407 TCTTACGTCTATTGCATGGTTTATGAT 59.069 33.333 0.00 0.00 39.21 2.45
500 501 6.421801 TGATGATGTCTTACGTCTATTGCATG 59.578 38.462 0.00 0.00 35.24 4.06
540 541 5.622180 ACGATGAGATACTACTGGCTTAGA 58.378 41.667 0.00 0.00 0.00 2.10
547 548 4.208666 TCGAACGACGATGAGATACTACTG 59.791 45.833 0.00 0.00 46.45 2.74
564 565 9.872791 CGTATCTTATAATGAAATGATCGAACG 57.127 33.333 0.00 0.00 0.00 3.95
614 1084 2.818751 TTGATGGCCTATTTTCCCGT 57.181 45.000 3.32 0.00 0.00 5.28
667 1325 6.994496 TCCTAAGCATCTTGTGATATTGGAAG 59.006 38.462 0.00 0.00 0.00 3.46
668 1326 6.899089 TCCTAAGCATCTTGTGATATTGGAA 58.101 36.000 0.00 0.00 0.00 3.53
669 1327 6.499106 TCCTAAGCATCTTGTGATATTGGA 57.501 37.500 0.00 0.00 0.00 3.53
671 1329 9.459640 CAAATTCCTAAGCATCTTGTGATATTG 57.540 33.333 0.00 0.00 0.00 1.90
673 1331 8.000709 TCCAAATTCCTAAGCATCTTGTGATAT 58.999 33.333 0.00 0.00 0.00 1.63
674 1332 7.345691 TCCAAATTCCTAAGCATCTTGTGATA 58.654 34.615 0.00 0.00 0.00 2.15
689 1350 4.340381 GCTTGTATGCATCTCCAAATTCCT 59.660 41.667 0.19 0.00 0.00 3.36
691 1352 5.511234 AGCTTGTATGCATCTCCAAATTC 57.489 39.130 0.19 0.00 34.99 2.17
703 1364 5.349543 CCAAATTTCCAAGAAGCTTGTATGC 59.650 40.000 2.10 0.00 0.00 3.14
712 1376 2.819608 TCCTCGCCAAATTTCCAAGAAG 59.180 45.455 0.00 0.00 0.00 2.85
714 1378 2.577606 TCCTCGCCAAATTTCCAAGA 57.422 45.000 0.00 0.00 0.00 3.02
741 1455 1.067060 GCCTGGCGGGAATGTAAATTC 59.933 52.381 18.84 0.00 37.23 2.17
759 1916 4.338118 TGATTCGAACCTAATTTCCATGCC 59.662 41.667 0.00 0.00 0.00 4.40
1404 2596 2.697761 ATGCTGGTACGACGACGCT 61.698 57.895 7.30 0.00 43.96 5.07
1579 2780 1.743252 CGCTCTTCTGGACCTTGCC 60.743 63.158 0.00 0.00 0.00 4.52
1699 2972 1.302033 CGTGCTTCTGGACCTTGCT 60.302 57.895 0.00 0.00 0.00 3.91
1775 3051 3.179265 CCTTGCTGTCGTACGCCG 61.179 66.667 11.24 3.65 38.13 6.46
1776 3052 2.048503 ACCTTGCTGTCGTACGCC 60.049 61.111 11.24 0.00 0.00 5.68
1818 3094 2.429571 TTGCTGTCGTACGCCGTC 60.430 61.111 11.24 1.68 37.94 4.79
1820 3096 3.179265 CCTTGCTGTCGTACGCCG 61.179 66.667 11.24 3.65 38.13 6.46
1872 3214 4.717629 TTCTGGACCGCGCTGTCG 62.718 66.667 23.04 12.23 36.07 4.35
1873 3215 3.112709 GTTCTGGACCGCGCTGTC 61.113 66.667 22.10 22.10 34.42 3.51
1874 3216 4.681978 GGTTCTGGACCGCGCTGT 62.682 66.667 3.38 3.38 39.00 4.40
1882 3224 0.951040 CCGTGCTTCTGGTTCTGGAC 60.951 60.000 0.00 0.00 0.00 4.02
1883 3225 1.371183 CCGTGCTTCTGGTTCTGGA 59.629 57.895 0.00 0.00 0.00 3.86
1884 3226 2.328099 GCCGTGCTTCTGGTTCTGG 61.328 63.158 0.00 0.00 0.00 3.86
1885 3227 0.037326 TAGCCGTGCTTCTGGTTCTG 60.037 55.000 3.71 0.00 40.44 3.02
1886 3228 0.037232 GTAGCCGTGCTTCTGGTTCT 60.037 55.000 3.71 0.00 40.44 3.01
1887 3229 1.352156 CGTAGCCGTGCTTCTGGTTC 61.352 60.000 3.71 0.00 40.44 3.62
1888 3230 1.374252 CGTAGCCGTGCTTCTGGTT 60.374 57.895 3.71 0.00 40.44 3.67
1889 3231 2.261671 CGTAGCCGTGCTTCTGGT 59.738 61.111 3.71 0.00 40.44 4.00
1890 3232 2.509336 CCGTAGCCGTGCTTCTGG 60.509 66.667 3.71 1.18 40.44 3.86
1891 3233 3.188786 GCCGTAGCCGTGCTTCTG 61.189 66.667 3.71 0.00 40.44 3.02
1892 3234 4.796231 CGCCGTAGCCGTGCTTCT 62.796 66.667 3.71 0.00 40.44 2.85
1893 3235 4.789075 TCGCCGTAGCCGTGCTTC 62.789 66.667 3.71 0.00 40.44 3.86
1894 3236 4.796231 CTCGCCGTAGCCGTGCTT 62.796 66.667 3.71 0.00 40.44 3.91
1897 3239 4.873129 ATGCTCGCCGTAGCCGTG 62.873 66.667 6.18 0.00 42.05 4.94
1898 3240 4.873129 CATGCTCGCCGTAGCCGT 62.873 66.667 6.18 0.00 42.05 5.68
1901 3243 4.221422 TCCCATGCTCGCCGTAGC 62.221 66.667 2.27 2.27 43.08 3.58
1902 3244 2.028190 CTCCCATGCTCGCCGTAG 59.972 66.667 0.00 0.00 0.00 3.51
1903 3245 4.221422 GCTCCCATGCTCGCCGTA 62.221 66.667 0.00 0.00 0.00 4.02
1958 3300 2.158959 CCGTAGCCGTGCTTCTTCG 61.159 63.158 3.71 5.13 40.44 3.79
2136 3508 1.378762 GTAAGCCTTCTGCCCACCA 59.621 57.895 0.00 0.00 42.71 4.17
2206 3578 2.720758 CGTGCTTCGTCTGCTTCGG 61.721 63.158 0.00 0.00 34.52 4.30
2447 3942 2.124983 GCTTCTGCATCTGCCGGA 60.125 61.111 5.05 0.00 41.18 5.14
2763 4332 4.112341 ACGCAGGTAGTCGTCGCC 62.112 66.667 0.00 0.00 33.09 5.54
2776 4345 3.955551 TGTAGGTAGGATTGTATCACGCA 59.044 43.478 0.00 0.00 0.00 5.24
2893 4477 6.492007 CACTTATGGTGGATGCAGAATATC 57.508 41.667 0.00 0.00 41.90 1.63
3270 4861 4.389576 CACTTGCTTGACGGCGCC 62.390 66.667 19.07 19.07 34.52 6.53
3275 4866 5.176774 TGTTATACTCAACACTTGCTTGACG 59.823 40.000 0.00 0.00 33.55 4.35
3276 4867 6.539649 TGTTATACTCAACACTTGCTTGAC 57.460 37.500 0.00 0.00 33.55 3.18
3277 4868 6.934083 TCATGTTATACTCAACACTTGCTTGA 59.066 34.615 0.00 0.00 41.02 3.02
3278 4869 7.132694 TCATGTTATACTCAACACTTGCTTG 57.867 36.000 0.00 0.00 41.02 4.01
3281 4872 7.017645 CACTTCATGTTATACTCAACACTTGC 58.982 38.462 0.00 0.00 41.02 4.01
3282 4873 8.087982 ACACTTCATGTTATACTCAACACTTG 57.912 34.615 0.00 0.00 38.98 3.16
3284 4875 9.424319 CTTACACTTCATGTTATACTCAACACT 57.576 33.333 0.00 0.00 43.19 3.55
3285 4876 8.656849 CCTTACACTTCATGTTATACTCAACAC 58.343 37.037 0.00 0.00 43.19 3.32
3286 4877 7.333423 GCCTTACACTTCATGTTATACTCAACA 59.667 37.037 0.00 0.00 43.19 3.33
3289 4880 6.941857 TGCCTTACACTTCATGTTATACTCA 58.058 36.000 0.00 0.00 43.19 3.41
3296 4887 6.663093 TCCATTTATGCCTTACACTTCATGTT 59.337 34.615 0.00 0.00 43.19 2.71
3299 4890 7.342799 ACAATCCATTTATGCCTTACACTTCAT 59.657 33.333 0.00 0.00 0.00 2.57
3300 4891 6.663093 ACAATCCATTTATGCCTTACACTTCA 59.337 34.615 0.00 0.00 0.00 3.02
3301 4892 6.974622 CACAATCCATTTATGCCTTACACTTC 59.025 38.462 0.00 0.00 0.00 3.01
3311 4902 2.462889 CACGGCACAATCCATTTATGC 58.537 47.619 0.00 0.00 35.51 3.14
3313 4904 1.408702 GCCACGGCACAATCCATTTAT 59.591 47.619 2.36 0.00 41.49 1.40
3314 4905 0.814457 GCCACGGCACAATCCATTTA 59.186 50.000 2.36 0.00 41.49 1.40
3317 4916 3.133464 CGCCACGGCACAATCCAT 61.133 61.111 9.11 0.00 42.06 3.41
3320 4919 4.101790 CCACGCCACGGCACAATC 62.102 66.667 9.11 0.00 42.06 2.67
3321 4920 4.634703 TCCACGCCACGGCACAAT 62.635 61.111 9.11 0.00 42.06 2.71
3327 4926 2.709125 TTCTGAACTCCACGCCACGG 62.709 60.000 0.00 0.00 0.00 4.94
3566 5167 5.534207 AAATTGGAGTTGTTGATGCTCAA 57.466 34.783 0.00 0.00 33.32 3.02
3590 5191 2.192664 TTAAACAGCCGGCTCATGAA 57.807 45.000 30.29 15.10 0.00 2.57
3612 5213 8.907885 AGCTGAAACTATTTCACTCTTTTCTTT 58.092 29.630 0.00 0.00 44.21 2.52
3615 5216 7.865707 TGAGCTGAAACTATTTCACTCTTTTC 58.134 34.615 21.19 0.00 44.21 2.29
3624 5225 7.891183 TGTCTTACTGAGCTGAAACTATTTC 57.109 36.000 0.00 0.00 40.08 2.17
3651 5252 2.101640 ACATGCTTTTCCCAACCCTT 57.898 45.000 0.00 0.00 0.00 3.95
3680 5281 8.116624 CTCTACGGAGTTGTAATTATGTGTTC 57.883 38.462 0.00 0.00 37.78 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.