Multiple sequence alignment - TraesCS3B01G450900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G450900 chr3B 100.000 2342 0 0 1 2342 691342611 691344952 0.00000 4325.0
1 TraesCS3B01G450900 chr3B 100.000 29 0 0 1473 1501 670157523 670157551 0.00100 54.7
2 TraesCS3B01G450900 chr3D 93.387 1119 46 11 487 1579 523833380 523834496 0.00000 1631.0
3 TraesCS3B01G450900 chr3D 90.091 656 50 9 1631 2272 523834500 523835154 0.00000 837.0
4 TraesCS3B01G450900 chr3D 100.000 29 0 0 1473 1501 571897500 571897472 0.00100 54.7
5 TraesCS3B01G450900 chr3A 90.468 1112 49 12 487 1562 658722497 658723587 0.00000 1413.0
6 TraesCS3B01G450900 chr3A 92.091 569 40 5 1775 2340 658723810 658724376 0.00000 797.0
7 TraesCS3B01G450900 chr3A 97.059 34 1 0 1828 1861 658723743 658723776 0.00009 58.4
8 TraesCS3B01G450900 chr1D 95.325 492 22 1 1 491 58485888 58486379 0.00000 780.0
9 TraesCS3B01G450900 chr1D 95.281 445 19 2 1 444 466346572 466347015 0.00000 704.0
10 TraesCS3B01G450900 chr1D 92.245 490 29 4 1 489 108798886 108799367 0.00000 686.0
11 TraesCS3B01G450900 chr1D 100.000 29 0 0 1473 1501 391363288 391363260 0.00100 54.7
12 TraesCS3B01G450900 chr1D 100.000 29 0 0 1473 1501 463974357 463974385 0.00100 54.7
13 TraesCS3B01G450900 chr2D 94.297 491 25 3 1 490 536208172 536207684 0.00000 749.0
14 TraesCS3B01G450900 chr5B 92.986 499 29 4 1 497 12549580 12549086 0.00000 723.0
15 TraesCS3B01G450900 chr7B 92.668 491 30 4 1 490 201419830 201419345 0.00000 702.0
16 TraesCS3B01G450900 chr5D 91.700 494 31 9 1 489 526624126 526623638 0.00000 676.0
17 TraesCS3B01G450900 chr6B 91.820 489 33 5 1 488 718728916 718728434 0.00000 675.0
18 TraesCS3B01G450900 chr7D 91.463 492 32 8 1 489 54972448 54971964 0.00000 667.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G450900 chr3B 691342611 691344952 2341 False 4325.000000 4325 100.000 1 2342 1 chr3B.!!$F2 2341
1 TraesCS3B01G450900 chr3D 523833380 523835154 1774 False 1234.000000 1631 91.739 487 2272 2 chr3D.!!$F1 1785
2 TraesCS3B01G450900 chr3A 658722497 658724376 1879 False 756.133333 1413 93.206 487 2340 3 chr3A.!!$F1 1853

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
340 341 0.031994 GCGGTTTGCATTCTGTTGGT 59.968 50.0 0.0 0.0 45.45 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1956 2069 1.342975 TGGTCATAGCTAGGAGGTGCA 60.343 52.381 8.65 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.487372 GAGAAGGGGGTTTACATATGCC 58.513 50.000 1.58 0.00 0.00 4.40
22 23 3.131252 AGAAGGGGGTTTACATATGCCT 58.869 45.455 1.58 0.00 0.00 4.75
23 24 4.312487 AGAAGGGGGTTTACATATGCCTA 58.688 43.478 1.58 0.00 0.00 3.93
24 25 4.104261 AGAAGGGGGTTTACATATGCCTAC 59.896 45.833 1.58 0.00 0.00 3.18
25 26 3.399454 AGGGGGTTTACATATGCCTACA 58.601 45.455 1.58 0.00 0.00 2.74
26 27 3.987501 AGGGGGTTTACATATGCCTACAT 59.012 43.478 1.58 0.00 40.49 2.29
27 28 5.167164 AGGGGGTTTACATATGCCTACATA 58.833 41.667 1.58 0.00 42.85 2.29
29 30 6.969443 AGGGGGTTTACATATGCCTACATATA 59.031 38.462 1.58 0.00 45.75 0.86
30 31 7.631756 AGGGGGTTTACATATGCCTACATATAT 59.368 37.037 1.58 0.00 45.75 0.86
31 32 7.719633 GGGGGTTTACATATGCCTACATATATG 59.280 40.741 11.29 11.29 45.75 1.78
32 33 7.228706 GGGGTTTACATATGCCTACATATATGC 59.771 40.741 12.79 0.00 45.75 3.14
33 34 7.773224 GGGTTTACATATGCCTACATATATGCA 59.227 37.037 12.79 5.31 45.75 3.96
34 35 8.830580 GGTTTACATATGCCTACATATATGCAG 58.169 37.037 12.79 9.22 45.75 4.41
35 36 9.383519 GTTTACATATGCCTACATATATGCAGT 57.616 33.333 12.79 2.75 45.75 4.40
38 39 8.078060 ACATATGCCTACATATATGCAGTACA 57.922 34.615 12.79 9.87 45.75 2.90
39 40 8.539544 ACATATGCCTACATATATGCAGTACAA 58.460 33.333 12.79 2.88 45.75 2.41
40 41 9.038803 CATATGCCTACATATATGCAGTACAAG 57.961 37.037 12.79 0.00 45.75 3.16
41 42 6.664428 TGCCTACATATATGCAGTACAAGA 57.336 37.500 12.79 0.00 29.64 3.02
42 43 7.061566 TGCCTACATATATGCAGTACAAGAA 57.938 36.000 12.79 0.00 29.64 2.52
43 44 7.505258 TGCCTACATATATGCAGTACAAGAAA 58.495 34.615 12.79 0.00 29.64 2.52
44 45 7.657354 TGCCTACATATATGCAGTACAAGAAAG 59.343 37.037 12.79 0.00 29.64 2.62
45 46 7.118390 GCCTACATATATGCAGTACAAGAAAGG 59.882 40.741 12.79 4.26 0.00 3.11
46 47 7.604164 CCTACATATATGCAGTACAAGAAAGGG 59.396 40.741 12.79 0.00 0.00 3.95
47 48 6.299141 ACATATATGCAGTACAAGAAAGGGG 58.701 40.000 12.79 0.00 0.00 4.79
48 49 2.514458 ATGCAGTACAAGAAAGGGGG 57.486 50.000 0.00 0.00 0.00 5.40
49 50 1.440618 TGCAGTACAAGAAAGGGGGA 58.559 50.000 0.00 0.00 0.00 4.81
50 51 1.777878 TGCAGTACAAGAAAGGGGGAA 59.222 47.619 0.00 0.00 0.00 3.97
51 52 2.224769 TGCAGTACAAGAAAGGGGGAAG 60.225 50.000 0.00 0.00 0.00 3.46
52 53 2.224793 GCAGTACAAGAAAGGGGGAAGT 60.225 50.000 0.00 0.00 0.00 3.01
53 54 3.412386 CAGTACAAGAAAGGGGGAAGTG 58.588 50.000 0.00 0.00 0.00 3.16
54 55 3.072476 CAGTACAAGAAAGGGGGAAGTGA 59.928 47.826 0.00 0.00 0.00 3.41
55 56 3.720002 AGTACAAGAAAGGGGGAAGTGAA 59.280 43.478 0.00 0.00 0.00 3.18
56 57 3.229697 ACAAGAAAGGGGGAAGTGAAG 57.770 47.619 0.00 0.00 0.00 3.02
57 58 2.783510 ACAAGAAAGGGGGAAGTGAAGA 59.216 45.455 0.00 0.00 0.00 2.87
58 59 3.181439 ACAAGAAAGGGGGAAGTGAAGAG 60.181 47.826 0.00 0.00 0.00 2.85
59 60 1.988846 AGAAAGGGGGAAGTGAAGAGG 59.011 52.381 0.00 0.00 0.00 3.69
60 61 1.004862 GAAAGGGGGAAGTGAAGAGGG 59.995 57.143 0.00 0.00 0.00 4.30
61 62 0.846870 AAGGGGGAAGTGAAGAGGGG 60.847 60.000 0.00 0.00 0.00 4.79
62 63 2.677848 GGGGAAGTGAAGAGGGGC 59.322 66.667 0.00 0.00 0.00 5.80
63 64 2.231380 GGGGAAGTGAAGAGGGGCA 61.231 63.158 0.00 0.00 0.00 5.36
64 65 1.301293 GGGAAGTGAAGAGGGGCAG 59.699 63.158 0.00 0.00 0.00 4.85
65 66 1.201429 GGGAAGTGAAGAGGGGCAGA 61.201 60.000 0.00 0.00 0.00 4.26
66 67 0.251634 GGAAGTGAAGAGGGGCAGAG 59.748 60.000 0.00 0.00 0.00 3.35
67 68 0.251634 GAAGTGAAGAGGGGCAGAGG 59.748 60.000 0.00 0.00 0.00 3.69
68 69 1.204113 AAGTGAAGAGGGGCAGAGGG 61.204 60.000 0.00 0.00 0.00 4.30
69 70 2.285668 TGAAGAGGGGCAGAGGGG 60.286 66.667 0.00 0.00 0.00 4.79
70 71 3.093172 GAAGAGGGGCAGAGGGGG 61.093 72.222 0.00 0.00 0.00 5.40
74 75 4.038804 AGGGGCAGAGGGGGCTTA 62.039 66.667 0.00 0.00 0.00 3.09
75 76 3.810188 GGGGCAGAGGGGGCTTAC 61.810 72.222 0.00 0.00 0.00 2.34
76 77 3.810188 GGGCAGAGGGGGCTTACC 61.810 72.222 0.00 0.00 39.11 2.85
77 78 2.692741 GGCAGAGGGGGCTTACCT 60.693 66.667 0.00 0.00 42.18 3.08
78 79 1.384082 GGCAGAGGGGGCTTACCTA 60.384 63.158 0.00 0.00 38.79 3.08
79 80 1.697082 GGCAGAGGGGGCTTACCTAC 61.697 65.000 0.00 0.00 38.79 3.18
80 81 0.691413 GCAGAGGGGGCTTACCTACT 60.691 60.000 0.00 0.00 38.79 2.57
81 82 1.880941 CAGAGGGGGCTTACCTACTT 58.119 55.000 0.00 0.00 38.79 2.24
82 83 1.486726 CAGAGGGGGCTTACCTACTTG 59.513 57.143 0.00 0.00 38.79 3.16
83 84 1.365028 AGAGGGGGCTTACCTACTTGA 59.635 52.381 0.00 0.00 38.79 3.02
84 85 2.021936 AGAGGGGGCTTACCTACTTGAT 60.022 50.000 0.00 0.00 38.79 2.57
85 86 2.104963 GAGGGGGCTTACCTACTTGATG 59.895 54.545 0.00 0.00 38.79 3.07
86 87 1.844497 GGGGGCTTACCTACTTGATGT 59.156 52.381 0.00 0.00 40.03 3.06
87 88 2.241430 GGGGGCTTACCTACTTGATGTT 59.759 50.000 0.00 0.00 40.03 2.71
88 89 3.457012 GGGGGCTTACCTACTTGATGTTA 59.543 47.826 0.00 0.00 40.03 2.41
89 90 4.104261 GGGGGCTTACCTACTTGATGTTAT 59.896 45.833 0.00 0.00 40.03 1.89
90 91 5.398695 GGGGGCTTACCTACTTGATGTTATT 60.399 44.000 0.00 0.00 40.03 1.40
91 92 5.531287 GGGGCTTACCTACTTGATGTTATTG 59.469 44.000 0.00 0.00 40.03 1.90
92 93 5.008712 GGGCTTACCTACTTGATGTTATTGC 59.991 44.000 0.00 0.00 35.85 3.56
93 94 5.008712 GGCTTACCTACTTGATGTTATTGCC 59.991 44.000 0.00 0.00 0.00 4.52
94 95 5.823045 GCTTACCTACTTGATGTTATTGCCT 59.177 40.000 0.00 0.00 0.00 4.75
95 96 6.238484 GCTTACCTACTTGATGTTATTGCCTG 60.238 42.308 0.00 0.00 0.00 4.85
96 97 4.526970 ACCTACTTGATGTTATTGCCTGG 58.473 43.478 0.00 0.00 0.00 4.45
97 98 4.018415 ACCTACTTGATGTTATTGCCTGGT 60.018 41.667 0.00 0.00 0.00 4.00
98 99 5.190925 ACCTACTTGATGTTATTGCCTGGTA 59.809 40.000 0.00 0.00 0.00 3.25
99 100 6.126478 ACCTACTTGATGTTATTGCCTGGTAT 60.126 38.462 0.00 0.00 0.00 2.73
100 101 6.205464 CCTACTTGATGTTATTGCCTGGTATG 59.795 42.308 0.00 0.00 0.00 2.39
101 102 4.889409 ACTTGATGTTATTGCCTGGTATGG 59.111 41.667 0.00 0.00 0.00 2.74
110 111 2.607811 CCTGGTATGGCTCTGACCA 58.392 57.895 2.26 2.26 45.82 4.02
111 112 0.179000 CCTGGTATGGCTCTGACCAC 59.821 60.000 1.87 0.00 44.17 4.16
112 113 0.179000 CTGGTATGGCTCTGACCACC 59.821 60.000 1.87 1.68 44.17 4.61
113 114 1.271840 TGGTATGGCTCTGACCACCC 61.272 60.000 1.87 5.82 44.17 4.61
114 115 0.983378 GGTATGGCTCTGACCACCCT 60.983 60.000 1.87 0.00 44.17 4.34
115 116 0.179000 GTATGGCTCTGACCACCCTG 59.821 60.000 1.87 0.00 44.17 4.45
116 117 0.252696 TATGGCTCTGACCACCCTGT 60.253 55.000 1.87 0.00 44.17 4.00
117 118 1.557269 ATGGCTCTGACCACCCTGTC 61.557 60.000 1.87 0.00 44.17 3.51
118 119 2.665603 GCTCTGACCACCCTGTCC 59.334 66.667 0.00 0.00 34.25 4.02
119 120 1.915769 GCTCTGACCACCCTGTCCT 60.916 63.158 0.00 0.00 34.25 3.85
120 121 1.484444 GCTCTGACCACCCTGTCCTT 61.484 60.000 0.00 0.00 34.25 3.36
121 122 1.938585 CTCTGACCACCCTGTCCTTA 58.061 55.000 0.00 0.00 34.25 2.69
122 123 1.827969 CTCTGACCACCCTGTCCTTAG 59.172 57.143 0.00 0.00 34.25 2.18
123 124 1.431633 TCTGACCACCCTGTCCTTAGA 59.568 52.381 0.00 0.00 34.25 2.10
124 125 2.044492 TCTGACCACCCTGTCCTTAGAT 59.956 50.000 0.00 0.00 34.25 1.98
125 126 2.432510 CTGACCACCCTGTCCTTAGATC 59.567 54.545 0.00 0.00 34.25 2.75
126 127 2.044492 TGACCACCCTGTCCTTAGATCT 59.956 50.000 0.00 0.00 34.25 2.75
127 128 3.108376 GACCACCCTGTCCTTAGATCTT 58.892 50.000 0.00 0.00 0.00 2.40
128 129 3.108376 ACCACCCTGTCCTTAGATCTTC 58.892 50.000 0.00 0.00 0.00 2.87
129 130 3.246167 ACCACCCTGTCCTTAGATCTTCT 60.246 47.826 0.00 0.00 0.00 2.85
130 131 3.777522 CCACCCTGTCCTTAGATCTTCTT 59.222 47.826 0.00 0.00 0.00 2.52
131 132 4.226168 CCACCCTGTCCTTAGATCTTCTTT 59.774 45.833 0.00 0.00 0.00 2.52
132 133 5.280727 CCACCCTGTCCTTAGATCTTCTTTT 60.281 44.000 0.00 0.00 0.00 2.27
133 134 6.241645 CACCCTGTCCTTAGATCTTCTTTTT 58.758 40.000 0.00 0.00 0.00 1.94
152 153 5.343307 TTTTTGAAGCAGCTCCTTCTTTT 57.657 34.783 18.11 0.00 41.36 2.27
153 154 6.463995 TTTTTGAAGCAGCTCCTTCTTTTA 57.536 33.333 18.11 0.00 41.36 1.52
154 155 5.438761 TTTGAAGCAGCTCCTTCTTTTAC 57.561 39.130 18.11 0.00 41.36 2.01
155 156 4.357918 TGAAGCAGCTCCTTCTTTTACT 57.642 40.909 18.11 0.00 41.36 2.24
156 157 4.718961 TGAAGCAGCTCCTTCTTTTACTT 58.281 39.130 18.11 0.00 41.36 2.24
157 158 5.133221 TGAAGCAGCTCCTTCTTTTACTTT 58.867 37.500 18.11 0.00 41.36 2.66
158 159 5.009010 TGAAGCAGCTCCTTCTTTTACTTTG 59.991 40.000 18.11 0.00 41.36 2.77
159 160 3.823304 AGCAGCTCCTTCTTTTACTTTGG 59.177 43.478 0.00 0.00 0.00 3.28
160 161 3.057245 GCAGCTCCTTCTTTTACTTTGGG 60.057 47.826 0.00 0.00 0.00 4.12
161 162 3.507622 CAGCTCCTTCTTTTACTTTGGGG 59.492 47.826 0.00 0.00 0.00 4.96
162 163 2.231478 GCTCCTTCTTTTACTTTGGGGC 59.769 50.000 0.00 0.00 33.73 5.80
163 164 3.767711 CTCCTTCTTTTACTTTGGGGCT 58.232 45.455 0.00 0.00 0.00 5.19
164 165 3.759086 CTCCTTCTTTTACTTTGGGGCTC 59.241 47.826 0.00 0.00 0.00 4.70
165 166 2.826128 CCTTCTTTTACTTTGGGGCTCC 59.174 50.000 0.00 0.00 0.00 4.70
166 167 2.597578 TCTTTTACTTTGGGGCTCCC 57.402 50.000 0.00 0.72 45.71 4.30
179 180 4.415150 CTCCCATGGCGGCTGTGT 62.415 66.667 11.43 0.00 0.00 3.72
180 181 3.006133 TCCCATGGCGGCTGTGTA 61.006 61.111 11.43 0.00 0.00 2.90
181 182 2.514592 CCCATGGCGGCTGTGTAG 60.515 66.667 11.43 0.00 0.00 2.74
182 183 2.514592 CCATGGCGGCTGTGTAGG 60.515 66.667 11.43 0.00 0.00 3.18
183 184 2.584064 CATGGCGGCTGTGTAGGA 59.416 61.111 11.43 0.00 0.00 2.94
184 185 1.522355 CATGGCGGCTGTGTAGGAG 60.522 63.158 11.43 0.00 0.00 3.69
185 186 2.735772 ATGGCGGCTGTGTAGGAGG 61.736 63.158 11.43 0.00 0.00 4.30
186 187 3.075005 GGCGGCTGTGTAGGAGGA 61.075 66.667 0.00 0.00 0.00 3.71
187 188 2.496817 GCGGCTGTGTAGGAGGAG 59.503 66.667 0.00 0.00 0.00 3.69
188 189 3.082579 GCGGCTGTGTAGGAGGAGG 62.083 68.421 0.00 0.00 0.00 4.30
189 190 1.379977 CGGCTGTGTAGGAGGAGGA 60.380 63.158 0.00 0.00 0.00 3.71
190 191 0.970937 CGGCTGTGTAGGAGGAGGAA 60.971 60.000 0.00 0.00 0.00 3.36
191 192 0.827368 GGCTGTGTAGGAGGAGGAAG 59.173 60.000 0.00 0.00 0.00 3.46
192 193 1.619977 GGCTGTGTAGGAGGAGGAAGA 60.620 57.143 0.00 0.00 0.00 2.87
193 194 2.180276 GCTGTGTAGGAGGAGGAAGAA 58.820 52.381 0.00 0.00 0.00 2.52
194 195 2.167487 GCTGTGTAGGAGGAGGAAGAAG 59.833 54.545 0.00 0.00 0.00 2.85
195 196 2.763448 CTGTGTAGGAGGAGGAAGAAGG 59.237 54.545 0.00 0.00 0.00 3.46
196 197 2.112190 GTGTAGGAGGAGGAAGAAGGG 58.888 57.143 0.00 0.00 0.00 3.95
197 198 1.124780 GTAGGAGGAGGAAGAAGGGC 58.875 60.000 0.00 0.00 0.00 5.19
198 199 1.019650 TAGGAGGAGGAAGAAGGGCT 58.980 55.000 0.00 0.00 0.00 5.19
199 200 0.620121 AGGAGGAGGAAGAAGGGCTG 60.620 60.000 0.00 0.00 0.00 4.85
200 201 1.631071 GGAGGAGGAAGAAGGGCTGG 61.631 65.000 0.00 0.00 0.00 4.85
201 202 1.617839 AGGAGGAAGAAGGGCTGGG 60.618 63.158 0.00 0.00 0.00 4.45
202 203 2.684499 GGAGGAAGAAGGGCTGGGG 61.684 68.421 0.00 0.00 0.00 4.96
203 204 2.615288 AGGAAGAAGGGCTGGGGG 60.615 66.667 0.00 0.00 0.00 5.40
219 220 2.115343 GGGGGCGATTCTATTGGATC 57.885 55.000 0.00 0.00 0.00 3.36
220 221 1.630878 GGGGGCGATTCTATTGGATCT 59.369 52.381 0.00 0.00 0.00 2.75
221 222 2.355209 GGGGGCGATTCTATTGGATCTC 60.355 54.545 0.00 0.00 0.00 2.75
222 223 2.355209 GGGGCGATTCTATTGGATCTCC 60.355 54.545 0.00 0.00 0.00 3.71
223 224 2.569404 GGGCGATTCTATTGGATCTCCT 59.431 50.000 4.71 0.00 36.82 3.69
224 225 3.008485 GGGCGATTCTATTGGATCTCCTT 59.992 47.826 4.71 0.00 36.82 3.36
225 226 4.249661 GGCGATTCTATTGGATCTCCTTC 58.750 47.826 0.00 0.00 36.82 3.46
226 227 4.020662 GGCGATTCTATTGGATCTCCTTCT 60.021 45.833 0.00 0.00 36.82 2.85
227 228 4.928615 GCGATTCTATTGGATCTCCTTCTG 59.071 45.833 0.00 0.00 36.82 3.02
228 229 5.477510 CGATTCTATTGGATCTCCTTCTGG 58.522 45.833 0.00 0.00 36.82 3.86
229 230 4.696479 TTCTATTGGATCTCCTTCTGGC 57.304 45.455 0.00 0.00 36.82 4.85
230 231 2.630098 TCTATTGGATCTCCTTCTGGCG 59.370 50.000 0.00 0.00 36.82 5.69
231 232 1.207791 ATTGGATCTCCTTCTGGCGT 58.792 50.000 0.00 0.00 36.82 5.68
232 233 0.250234 TTGGATCTCCTTCTGGCGTG 59.750 55.000 0.00 0.00 36.82 5.34
233 234 1.522580 GGATCTCCTTCTGGCGTGC 60.523 63.158 0.00 0.00 0.00 5.34
234 235 1.219124 GATCTCCTTCTGGCGTGCA 59.781 57.895 0.00 0.00 0.00 4.57
235 236 0.809241 GATCTCCTTCTGGCGTGCAG 60.809 60.000 0.00 0.00 0.00 4.41
236 237 1.260538 ATCTCCTTCTGGCGTGCAGA 61.261 55.000 0.00 0.00 0.00 4.26
237 238 1.004560 CTCCTTCTGGCGTGCAGAA 60.005 57.895 0.00 0.00 37.18 3.02
241 242 2.918571 TTCTGGCGTGCAGAAGAAG 58.081 52.632 0.00 0.00 34.16 2.85
242 243 0.392706 TTCTGGCGTGCAGAAGAAGA 59.607 50.000 0.00 0.00 34.16 2.87
243 244 0.392706 TCTGGCGTGCAGAAGAAGAA 59.607 50.000 0.00 0.00 0.00 2.52
244 245 0.795085 CTGGCGTGCAGAAGAAGAAG 59.205 55.000 0.00 0.00 0.00 2.85
245 246 0.392706 TGGCGTGCAGAAGAAGAAGA 59.607 50.000 0.00 0.00 0.00 2.87
246 247 1.202639 TGGCGTGCAGAAGAAGAAGAA 60.203 47.619 0.00 0.00 0.00 2.52
247 248 1.462670 GGCGTGCAGAAGAAGAAGAAG 59.537 52.381 0.00 0.00 0.00 2.85
248 249 1.462670 GCGTGCAGAAGAAGAAGAAGG 59.537 52.381 0.00 0.00 0.00 3.46
249 250 1.462670 CGTGCAGAAGAAGAAGAAGGC 59.537 52.381 0.00 0.00 0.00 4.35
250 251 2.498167 GTGCAGAAGAAGAAGAAGGCA 58.502 47.619 0.00 0.00 0.00 4.75
251 252 2.483491 GTGCAGAAGAAGAAGAAGGCAG 59.517 50.000 0.00 0.00 0.00 4.85
252 253 2.105477 TGCAGAAGAAGAAGAAGGCAGT 59.895 45.455 0.00 0.00 0.00 4.40
253 254 2.483491 GCAGAAGAAGAAGAAGGCAGTG 59.517 50.000 0.00 0.00 0.00 3.66
254 255 3.737850 CAGAAGAAGAAGAAGGCAGTGT 58.262 45.455 0.00 0.00 0.00 3.55
255 256 3.497640 CAGAAGAAGAAGAAGGCAGTGTG 59.502 47.826 0.00 0.00 0.00 3.82
256 257 2.557920 AGAAGAAGAAGGCAGTGTGG 57.442 50.000 0.00 0.00 0.00 4.17
257 258 1.072965 AGAAGAAGAAGGCAGTGTGGG 59.927 52.381 0.00 0.00 0.00 4.61
258 259 1.072331 GAAGAAGAAGGCAGTGTGGGA 59.928 52.381 0.00 0.00 0.00 4.37
259 260 0.689623 AGAAGAAGGCAGTGTGGGAG 59.310 55.000 0.00 0.00 0.00 4.30
260 261 0.322008 GAAGAAGGCAGTGTGGGAGG 60.322 60.000 0.00 0.00 0.00 4.30
261 262 1.783250 AAGAAGGCAGTGTGGGAGGG 61.783 60.000 0.00 0.00 0.00 4.30
262 263 3.260100 AAGGCAGTGTGGGAGGGG 61.260 66.667 0.00 0.00 0.00 4.79
265 266 4.729918 GCAGTGTGGGAGGGGCTG 62.730 72.222 0.00 0.00 0.00 4.85
266 267 2.930019 CAGTGTGGGAGGGGCTGA 60.930 66.667 0.00 0.00 0.00 4.26
267 268 2.608988 AGTGTGGGAGGGGCTGAG 60.609 66.667 0.00 0.00 0.00 3.35
268 269 3.721706 GTGTGGGAGGGGCTGAGG 61.722 72.222 0.00 0.00 0.00 3.86
339 340 2.813100 GCGGTTTGCATTCTGTTGG 58.187 52.632 0.00 0.00 45.45 3.77
340 341 0.031994 GCGGTTTGCATTCTGTTGGT 59.968 50.000 0.00 0.00 45.45 3.67
341 342 1.769733 CGGTTTGCATTCTGTTGGTG 58.230 50.000 0.00 0.00 0.00 4.17
342 343 1.602668 CGGTTTGCATTCTGTTGGTGG 60.603 52.381 0.00 0.00 0.00 4.61
343 344 1.501169 GTTTGCATTCTGTTGGTGGC 58.499 50.000 0.00 0.00 0.00 5.01
344 345 0.392336 TTTGCATTCTGTTGGTGGCC 59.608 50.000 0.00 0.00 0.00 5.36
345 346 1.804396 TTGCATTCTGTTGGTGGCCG 61.804 55.000 0.00 0.00 0.00 6.13
346 347 2.568090 CATTCTGTTGGTGGCCGC 59.432 61.111 8.12 8.12 0.00 6.53
347 348 1.973281 CATTCTGTTGGTGGCCGCT 60.973 57.895 17.49 0.00 0.00 5.52
348 349 1.675641 ATTCTGTTGGTGGCCGCTC 60.676 57.895 17.49 7.05 0.00 5.03
349 350 4.680237 TCTGTTGGTGGCCGCTCG 62.680 66.667 17.49 0.53 0.00 5.03
350 351 4.680237 CTGTTGGTGGCCGCTCGA 62.680 66.667 17.49 3.32 0.00 4.04
351 352 3.958147 CTGTTGGTGGCCGCTCGAT 62.958 63.158 17.49 0.00 0.00 3.59
352 353 3.195698 GTTGGTGGCCGCTCGATC 61.196 66.667 17.49 0.00 0.00 3.69
353 354 4.812476 TTGGTGGCCGCTCGATCG 62.812 66.667 17.49 9.36 0.00 3.69
360 361 2.490217 CCGCTCGATCGGTCTGTT 59.510 61.111 19.25 0.00 44.18 3.16
361 362 1.153823 CCGCTCGATCGGTCTGTTT 60.154 57.895 19.25 0.00 44.18 2.83
362 363 0.736325 CCGCTCGATCGGTCTGTTTT 60.736 55.000 19.25 0.00 44.18 2.43
363 364 0.366871 CGCTCGATCGGTCTGTTTTG 59.633 55.000 16.41 0.00 0.00 2.44
364 365 0.721718 GCTCGATCGGTCTGTTTTGG 59.278 55.000 16.41 0.00 0.00 3.28
365 366 1.939838 GCTCGATCGGTCTGTTTTGGT 60.940 52.381 16.41 0.00 0.00 3.67
366 367 1.726791 CTCGATCGGTCTGTTTTGGTG 59.273 52.381 16.41 0.00 0.00 4.17
367 368 0.796312 CGATCGGTCTGTTTTGGTGG 59.204 55.000 7.38 0.00 0.00 4.61
368 369 0.521735 GATCGGTCTGTTTTGGTGGC 59.478 55.000 0.00 0.00 0.00 5.01
369 370 0.893727 ATCGGTCTGTTTTGGTGGCC 60.894 55.000 0.00 0.00 0.00 5.36
370 371 2.903547 CGGTCTGTTTTGGTGGCCG 61.904 63.158 0.00 0.00 0.00 6.13
371 372 2.561037 GGTCTGTTTTGGTGGCCGG 61.561 63.158 0.00 0.00 0.00 6.13
372 373 1.826487 GTCTGTTTTGGTGGCCGGT 60.826 57.895 1.90 0.00 0.00 5.28
373 374 1.527380 TCTGTTTTGGTGGCCGGTC 60.527 57.895 0.00 0.00 0.00 4.79
374 375 2.902846 TGTTTTGGTGGCCGGTCG 60.903 61.111 0.00 0.00 0.00 4.79
375 376 2.592287 GTTTTGGTGGCCGGTCGA 60.592 61.111 0.00 0.00 0.00 4.20
376 377 1.969589 GTTTTGGTGGCCGGTCGAT 60.970 57.895 0.00 0.00 0.00 3.59
377 378 1.673009 TTTTGGTGGCCGGTCGATC 60.673 57.895 0.00 0.00 0.00 3.69
378 379 3.943479 TTTGGTGGCCGGTCGATCG 62.943 63.158 12.09 12.09 0.00 3.69
390 391 3.199551 CGATCGGTCGGGTTGGTA 58.800 61.111 11.03 0.00 44.00 3.25
391 392 1.065273 CGATCGGTCGGGTTGGTAG 59.935 63.158 11.03 0.00 44.00 3.18
392 393 1.660560 CGATCGGTCGGGTTGGTAGT 61.661 60.000 11.03 0.00 44.00 2.73
393 394 0.101939 GATCGGTCGGGTTGGTAGTC 59.898 60.000 0.00 0.00 0.00 2.59
394 395 1.325476 ATCGGTCGGGTTGGTAGTCC 61.325 60.000 0.00 0.00 0.00 3.85
395 396 1.980772 CGGTCGGGTTGGTAGTCCT 60.981 63.158 0.00 0.00 34.23 3.85
396 397 1.538687 CGGTCGGGTTGGTAGTCCTT 61.539 60.000 0.00 0.00 34.23 3.36
397 398 0.248565 GGTCGGGTTGGTAGTCCTTC 59.751 60.000 0.00 0.00 34.23 3.46
398 399 0.248565 GTCGGGTTGGTAGTCCTTCC 59.751 60.000 0.00 0.00 34.23 3.46
399 400 0.115745 TCGGGTTGGTAGTCCTTCCT 59.884 55.000 0.00 0.00 34.23 3.36
400 401 0.981943 CGGGTTGGTAGTCCTTCCTT 59.018 55.000 0.00 0.00 34.23 3.36
401 402 1.350019 CGGGTTGGTAGTCCTTCCTTT 59.650 52.381 0.00 0.00 34.23 3.11
402 403 2.224695 CGGGTTGGTAGTCCTTCCTTTT 60.225 50.000 0.00 0.00 34.23 2.27
403 404 3.418995 GGGTTGGTAGTCCTTCCTTTTC 58.581 50.000 0.00 0.00 34.23 2.29
404 405 3.074094 GGGTTGGTAGTCCTTCCTTTTCT 59.926 47.826 0.00 0.00 34.23 2.52
405 406 4.072839 GGTTGGTAGTCCTTCCTTTTCTG 58.927 47.826 0.00 0.00 34.23 3.02
406 407 4.445879 GGTTGGTAGTCCTTCCTTTTCTGT 60.446 45.833 0.00 0.00 34.23 3.41
407 408 5.131067 GTTGGTAGTCCTTCCTTTTCTGTT 58.869 41.667 0.00 0.00 34.23 3.16
408 409 5.382664 TGGTAGTCCTTCCTTTTCTGTTT 57.617 39.130 0.00 0.00 34.23 2.83
409 410 5.374071 TGGTAGTCCTTCCTTTTCTGTTTC 58.626 41.667 0.00 0.00 34.23 2.78
410 411 4.451435 GGTAGTCCTTCCTTTTCTGTTTCG 59.549 45.833 0.00 0.00 0.00 3.46
411 412 2.879026 AGTCCTTCCTTTTCTGTTTCGC 59.121 45.455 0.00 0.00 0.00 4.70
412 413 1.871039 TCCTTCCTTTTCTGTTTCGCG 59.129 47.619 0.00 0.00 0.00 5.87
413 414 1.069227 CCTTCCTTTTCTGTTTCGCGG 60.069 52.381 6.13 0.00 0.00 6.46
414 415 0.948678 TTCCTTTTCTGTTTCGCGGG 59.051 50.000 6.13 0.00 0.00 6.13
415 416 0.887387 TCCTTTTCTGTTTCGCGGGG 60.887 55.000 6.13 0.00 0.00 5.73
416 417 0.887387 CCTTTTCTGTTTCGCGGGGA 60.887 55.000 6.13 0.00 0.00 4.81
417 418 0.948678 CTTTTCTGTTTCGCGGGGAA 59.051 50.000 6.13 3.07 0.00 3.97
418 419 1.335496 CTTTTCTGTTTCGCGGGGAAA 59.665 47.619 15.25 15.25 42.23 3.13
419 420 1.390565 TTTCTGTTTCGCGGGGAAAA 58.609 45.000 19.95 10.69 45.74 2.29
420 421 0.948678 TTCTGTTTCGCGGGGAAAAG 59.051 50.000 19.95 17.72 45.74 2.27
421 422 0.887387 TCTGTTTCGCGGGGAAAAGG 60.887 55.000 19.95 15.25 45.74 3.11
422 423 1.862602 CTGTTTCGCGGGGAAAAGGG 61.863 60.000 19.95 10.37 45.74 3.95
423 424 2.282603 TTTCGCGGGGAAAAGGGG 60.283 61.111 16.65 0.00 41.55 4.79
424 425 2.831645 TTTCGCGGGGAAAAGGGGA 61.832 57.895 16.65 0.00 41.55 4.81
425 426 2.144859 TTTCGCGGGGAAAAGGGGAT 62.145 55.000 16.65 0.00 41.55 3.85
426 427 2.044352 CGCGGGGAAAAGGGGATT 60.044 61.111 0.00 0.00 0.00 3.01
427 428 1.680989 CGCGGGGAAAAGGGGATTT 60.681 57.895 0.00 0.00 0.00 2.17
428 429 1.254975 CGCGGGGAAAAGGGGATTTT 61.255 55.000 0.00 0.00 43.88 1.82
439 440 4.623932 AAGGGGATTTTCTTTTTCAGCC 57.376 40.909 0.00 0.00 0.00 4.85
440 441 2.562738 AGGGGATTTTCTTTTTCAGCCG 59.437 45.455 0.00 0.00 0.00 5.52
441 442 2.353704 GGGGATTTTCTTTTTCAGCCGG 60.354 50.000 0.00 0.00 0.00 6.13
442 443 2.337583 GGATTTTCTTTTTCAGCCGGC 58.662 47.619 21.89 21.89 0.00 6.13
443 444 2.337583 GATTTTCTTTTTCAGCCGGCC 58.662 47.619 26.15 5.07 0.00 6.13
444 445 1.115467 TTTTCTTTTTCAGCCGGCCA 58.885 45.000 26.15 7.35 0.00 5.36
445 446 1.337118 TTTCTTTTTCAGCCGGCCAT 58.663 45.000 26.15 1.18 0.00 4.40
446 447 1.337118 TTCTTTTTCAGCCGGCCATT 58.663 45.000 26.15 0.18 0.00 3.16
447 448 0.887933 TCTTTTTCAGCCGGCCATTC 59.112 50.000 26.15 0.00 0.00 2.67
448 449 0.456653 CTTTTTCAGCCGGCCATTCG 60.457 55.000 26.15 6.97 0.00 3.34
455 456 4.114997 CCGGCCATTCGGTTGCAC 62.115 66.667 2.24 0.00 44.60 4.57
456 457 3.055719 CGGCCATTCGGTTGCACT 61.056 61.111 2.24 0.00 33.28 4.40
457 458 1.743623 CGGCCATTCGGTTGCACTA 60.744 57.895 2.24 0.00 33.28 2.74
458 459 1.705337 CGGCCATTCGGTTGCACTAG 61.705 60.000 2.24 0.00 33.28 2.57
459 460 0.676782 GGCCATTCGGTTGCACTAGT 60.677 55.000 0.00 0.00 33.28 2.57
460 461 1.165270 GCCATTCGGTTGCACTAGTT 58.835 50.000 0.00 0.00 33.28 2.24
461 462 1.135689 GCCATTCGGTTGCACTAGTTG 60.136 52.381 0.00 0.00 33.28 3.16
462 463 1.468520 CCATTCGGTTGCACTAGTTGG 59.531 52.381 0.00 0.00 0.00 3.77
463 464 1.135689 CATTCGGTTGCACTAGTTGGC 60.136 52.381 0.00 0.00 0.00 4.52
464 465 0.179043 TTCGGTTGCACTAGTTGGCA 60.179 50.000 3.87 3.87 38.46 4.92
465 466 0.602638 TCGGTTGCACTAGTTGGCAG 60.603 55.000 7.82 0.00 41.68 4.85
466 467 1.581447 GGTTGCACTAGTTGGCAGC 59.419 57.895 11.98 11.98 41.68 5.25
467 468 1.581447 GTTGCACTAGTTGGCAGCC 59.419 57.895 3.66 3.66 41.68 4.85
468 469 1.965930 TTGCACTAGTTGGCAGCCG 60.966 57.895 7.03 0.00 41.68 5.52
469 470 3.127533 GCACTAGTTGGCAGCCGG 61.128 66.667 7.03 0.00 0.00 6.13
470 471 3.127533 CACTAGTTGGCAGCCGGC 61.128 66.667 21.89 21.89 43.74 6.13
479 480 3.467226 GCAGCCGGCCACCTACTA 61.467 66.667 26.15 0.00 36.11 1.82
480 481 2.815308 CAGCCGGCCACCTACTAG 59.185 66.667 26.15 0.00 0.00 2.57
481 482 1.756950 CAGCCGGCCACCTACTAGA 60.757 63.158 26.15 0.00 0.00 2.43
482 483 1.757340 AGCCGGCCACCTACTAGAC 60.757 63.158 26.15 0.00 0.00 2.59
483 484 3.117372 CCGGCCACCTACTAGACG 58.883 66.667 2.24 0.00 0.00 4.18
484 485 2.412112 CGGCCACCTACTAGACGC 59.588 66.667 2.24 0.00 0.00 5.19
485 486 2.412112 GGCCACCTACTAGACGCG 59.588 66.667 3.53 3.53 0.00 6.01
486 487 2.413142 GGCCACCTACTAGACGCGT 61.413 63.158 13.85 13.85 0.00 6.01
487 488 1.063811 GCCACCTACTAGACGCGTC 59.936 63.158 31.30 31.30 0.00 5.19
488 489 1.726265 CCACCTACTAGACGCGTCC 59.274 63.158 34.08 17.26 0.00 4.79
629 636 0.670546 TGCAGAAGCTACAAGTCGGC 60.671 55.000 1.11 1.11 42.74 5.54
872 893 3.306156 GCTTCTTCTCCCCGTGTATATCC 60.306 52.174 0.00 0.00 0.00 2.59
887 908 8.171400 CCGTGTATATCCCCTCCTATATAATCT 58.829 40.741 0.00 0.00 0.00 2.40
908 929 1.089112 CCATTGCACTGCGATCTTCA 58.911 50.000 0.20 0.00 28.96 3.02
928 949 5.957771 TCATACTCATTCCTAACCAGCTT 57.042 39.130 0.00 0.00 0.00 3.74
930 951 7.055667 TCATACTCATTCCTAACCAGCTTAG 57.944 40.000 0.00 0.00 32.75 2.18
1122 1148 2.106332 GGCTACGTCCCGATGGTG 59.894 66.667 0.00 0.00 0.00 4.17
1260 1286 2.764128 GGCGTCCTGAGGATCCCA 60.764 66.667 8.55 5.41 32.73 4.37
1317 1343 3.933722 CGGCGGGAGATGCAGGAT 61.934 66.667 0.00 0.00 0.00 3.24
1318 1344 2.512896 GGCGGGAGATGCAGGATT 59.487 61.111 0.00 0.00 0.00 3.01
1354 1380 0.394625 ACACTAGGAGAGAGCCGACC 60.395 60.000 0.00 0.00 0.00 4.79
1448 1476 8.759481 TGAATTGCCTTTGTGGTATCAATATA 57.241 30.769 0.00 0.00 38.35 0.86
1579 1626 5.048921 CACGGTCGATCCTATTACTACACAT 60.049 44.000 0.00 0.00 0.00 3.21
1580 1627 5.533903 ACGGTCGATCCTATTACTACACATT 59.466 40.000 0.00 0.00 0.00 2.71
1581 1628 6.040166 ACGGTCGATCCTATTACTACACATTT 59.960 38.462 0.00 0.00 0.00 2.32
1582 1629 6.581542 CGGTCGATCCTATTACTACACATTTC 59.418 42.308 0.00 0.00 0.00 2.17
1583 1630 7.521748 CGGTCGATCCTATTACTACACATTTCT 60.522 40.741 0.00 0.00 0.00 2.52
1584 1631 8.142551 GGTCGATCCTATTACTACACATTTCTT 58.857 37.037 0.00 0.00 0.00 2.52
1585 1632 9.530633 GTCGATCCTATTACTACACATTTCTTT 57.469 33.333 0.00 0.00 0.00 2.52
1610 1657 3.996921 TTTTGCGGGGGTATTACTACA 57.003 42.857 0.00 0.00 0.00 2.74
1611 1658 2.985957 TTGCGGGGGTATTACTACAC 57.014 50.000 0.00 0.00 0.00 2.90
1612 1659 1.863325 TGCGGGGGTATTACTACACA 58.137 50.000 0.00 0.00 32.50 3.72
1692 1739 6.832804 TCGTAATGTCATTATCGTGCAAAAA 58.167 32.000 18.51 4.48 0.00 1.94
1741 1788 6.303021 TGAACTAAAACCACGACAATAACC 57.697 37.500 0.00 0.00 0.00 2.85
1749 1796 3.504520 ACCACGACAATAACCATGAAACC 59.495 43.478 0.00 0.00 0.00 3.27
1759 1806 3.329929 ACCATGAAACCGAGGAAGTAC 57.670 47.619 0.00 0.00 0.00 2.73
1761 1815 3.000727 CCATGAAACCGAGGAAGTACAC 58.999 50.000 0.00 0.00 0.00 2.90
1773 1865 7.039882 CCGAGGAAGTACACAACTATAAATGT 58.960 38.462 0.00 0.00 37.50 2.71
1774 1866 8.192774 CCGAGGAAGTACACAACTATAAATGTA 58.807 37.037 0.00 0.00 37.50 2.29
1775 1867 9.577110 CGAGGAAGTACACAACTATAAATGTAA 57.423 33.333 0.00 0.00 37.50 2.41
1856 1966 6.017357 GTGAACGAGGTTTCTTCAAAATACCT 60.017 38.462 0.00 0.00 41.74 3.08
1877 1987 6.293698 ACCTAAGTGTGGTTATCGTCTTTTT 58.706 36.000 0.00 0.00 33.34 1.94
1885 1995 6.932400 TGTGGTTATCGTCTTTTTCACTGTAT 59.068 34.615 0.00 0.00 0.00 2.29
1891 2001 5.227908 TCGTCTTTTTCACTGTATGACTCC 58.772 41.667 0.00 0.00 36.92 3.85
1952 2065 7.011763 CGATTGACATCAATTTGTATCCACTCT 59.988 37.037 8.47 0.00 45.72 3.24
1953 2066 7.615582 TTGACATCAATTTGTATCCACTCTC 57.384 36.000 0.00 0.00 0.00 3.20
1954 2067 6.710278 TGACATCAATTTGTATCCACTCTCA 58.290 36.000 0.00 0.00 0.00 3.27
1955 2068 7.341030 TGACATCAATTTGTATCCACTCTCAT 58.659 34.615 0.00 0.00 0.00 2.90
1956 2069 7.830697 TGACATCAATTTGTATCCACTCTCATT 59.169 33.333 0.00 0.00 0.00 2.57
1957 2070 7.993101 ACATCAATTTGTATCCACTCTCATTG 58.007 34.615 0.00 0.00 0.00 2.82
1959 2072 5.945191 TCAATTTGTATCCACTCTCATTGCA 59.055 36.000 0.00 0.00 0.00 4.08
1960 2073 5.824904 ATTTGTATCCACTCTCATTGCAC 57.175 39.130 0.00 0.00 0.00 4.57
1961 2074 3.266510 TGTATCCACTCTCATTGCACC 57.733 47.619 0.00 0.00 0.00 5.01
2002 2115 4.453819 GTGAGCATAAGCATCTATTCCCAC 59.546 45.833 0.00 0.00 45.49 4.61
2024 2138 7.331193 CCCACTATGATATTTAACTCGCCTTAC 59.669 40.741 0.00 0.00 0.00 2.34
2096 2210 4.430007 GACTCCAATATGACGTTGCAGTA 58.570 43.478 0.00 0.00 28.15 2.74
2099 2213 5.523916 ACTCCAATATGACGTTGCAGTAATC 59.476 40.000 0.00 0.00 26.24 1.75
2114 2228 4.458397 CAGTAATCCTCCAGATTGTGCAT 58.542 43.478 0.00 0.00 45.11 3.96
2185 2299 0.326264 ACTCCACAGAAGGCATCACC 59.674 55.000 0.00 0.00 39.61 4.02
2186 2300 0.742281 CTCCACAGAAGGCATCACCG 60.742 60.000 0.00 0.00 46.52 4.94
2195 2309 0.463204 AGGCATCACCGAGAGACATG 59.537 55.000 0.00 0.00 46.52 3.21
2281 2395 8.860088 ACAATAAGACAGAAAGCTACCAAAAAT 58.140 29.630 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.138468 AGGCATATGTAAACCCCCTTCTC 59.862 47.826 4.29 0.00 0.00 2.87
1 2 3.131252 AGGCATATGTAAACCCCCTTCT 58.869 45.455 4.29 0.00 0.00 2.85
2 3 3.595190 AGGCATATGTAAACCCCCTTC 57.405 47.619 4.29 0.00 0.00 3.46
3 4 3.789274 TGTAGGCATATGTAAACCCCCTT 59.211 43.478 4.29 0.00 0.00 3.95
5 6 3.868619 TGTAGGCATATGTAAACCCCC 57.131 47.619 4.29 0.00 0.00 5.40
6 7 7.228706 GCATATATGTAGGCATATGTAAACCCC 59.771 40.741 14.14 0.00 45.15 4.95
7 8 7.773224 TGCATATATGTAGGCATATGTAAACCC 59.227 37.037 14.14 0.00 45.15 4.11
8 9 8.731275 TGCATATATGTAGGCATATGTAAACC 57.269 34.615 14.14 0.00 45.15 3.27
9 10 9.383519 ACTGCATATATGTAGGCATATGTAAAC 57.616 33.333 27.79 0.97 45.41 2.01
12 13 9.196139 TGTACTGCATATATGTAGGCATATGTA 57.804 33.333 27.79 12.26 45.41 2.29
13 14 8.078060 TGTACTGCATATATGTAGGCATATGT 57.922 34.615 27.79 13.09 45.41 2.29
14 15 8.947055 TTGTACTGCATATATGTAGGCATATG 57.053 34.615 27.79 8.58 45.41 1.78
15 16 8.981659 TCTTGTACTGCATATATGTAGGCATAT 58.018 33.333 27.79 13.62 45.41 1.78
16 17 8.361169 TCTTGTACTGCATATATGTAGGCATA 57.639 34.615 27.79 14.69 45.41 3.14
17 18 7.244886 TCTTGTACTGCATATATGTAGGCAT 57.755 36.000 27.79 14.21 45.41 4.40
18 19 6.664428 TCTTGTACTGCATATATGTAGGCA 57.336 37.500 27.79 22.94 44.50 4.75
19 20 7.118390 CCTTTCTTGTACTGCATATATGTAGGC 59.882 40.741 27.79 21.20 43.59 3.93
20 21 7.604164 CCCTTTCTTGTACTGCATATATGTAGG 59.396 40.741 27.79 14.10 43.59 3.18
21 22 7.604164 CCCCTTTCTTGTACTGCATATATGTAG 59.396 40.741 24.29 24.29 44.64 2.74
22 23 7.450074 CCCCTTTCTTGTACTGCATATATGTA 58.550 38.462 14.14 8.88 0.00 2.29
23 24 6.299141 CCCCTTTCTTGTACTGCATATATGT 58.701 40.000 14.14 0.00 0.00 2.29
24 25 5.707298 CCCCCTTTCTTGTACTGCATATATG 59.293 44.000 8.45 8.45 0.00 1.78
25 26 5.610982 TCCCCCTTTCTTGTACTGCATATAT 59.389 40.000 0.00 0.00 0.00 0.86
26 27 4.972568 TCCCCCTTTCTTGTACTGCATATA 59.027 41.667 0.00 0.00 0.00 0.86
27 28 3.785887 TCCCCCTTTCTTGTACTGCATAT 59.214 43.478 0.00 0.00 0.00 1.78
28 29 3.186283 TCCCCCTTTCTTGTACTGCATA 58.814 45.455 0.00 0.00 0.00 3.14
29 30 1.992557 TCCCCCTTTCTTGTACTGCAT 59.007 47.619 0.00 0.00 0.00 3.96
30 31 1.440618 TCCCCCTTTCTTGTACTGCA 58.559 50.000 0.00 0.00 0.00 4.41
31 32 2.224793 ACTTCCCCCTTTCTTGTACTGC 60.225 50.000 0.00 0.00 0.00 4.40
32 33 3.072476 TCACTTCCCCCTTTCTTGTACTG 59.928 47.826 0.00 0.00 0.00 2.74
33 34 3.323775 TCACTTCCCCCTTTCTTGTACT 58.676 45.455 0.00 0.00 0.00 2.73
34 35 3.782656 TCACTTCCCCCTTTCTTGTAC 57.217 47.619 0.00 0.00 0.00 2.90
35 36 3.977999 TCTTCACTTCCCCCTTTCTTGTA 59.022 43.478 0.00 0.00 0.00 2.41
36 37 2.783510 TCTTCACTTCCCCCTTTCTTGT 59.216 45.455 0.00 0.00 0.00 3.16
37 38 3.416156 CTCTTCACTTCCCCCTTTCTTG 58.584 50.000 0.00 0.00 0.00 3.02
38 39 2.376855 CCTCTTCACTTCCCCCTTTCTT 59.623 50.000 0.00 0.00 0.00 2.52
39 40 1.988846 CCTCTTCACTTCCCCCTTTCT 59.011 52.381 0.00 0.00 0.00 2.52
40 41 1.004862 CCCTCTTCACTTCCCCCTTTC 59.995 57.143 0.00 0.00 0.00 2.62
41 42 1.076438 CCCTCTTCACTTCCCCCTTT 58.924 55.000 0.00 0.00 0.00 3.11
42 43 0.846870 CCCCTCTTCACTTCCCCCTT 60.847 60.000 0.00 0.00 0.00 3.95
43 44 1.229984 CCCCTCTTCACTTCCCCCT 60.230 63.158 0.00 0.00 0.00 4.79
44 45 2.985116 GCCCCTCTTCACTTCCCCC 61.985 68.421 0.00 0.00 0.00 5.40
45 46 2.203549 CTGCCCCTCTTCACTTCCCC 62.204 65.000 0.00 0.00 0.00 4.81
46 47 1.201429 TCTGCCCCTCTTCACTTCCC 61.201 60.000 0.00 0.00 0.00 3.97
47 48 0.251634 CTCTGCCCCTCTTCACTTCC 59.748 60.000 0.00 0.00 0.00 3.46
48 49 0.251634 CCTCTGCCCCTCTTCACTTC 59.748 60.000 0.00 0.00 0.00 3.01
49 50 1.204113 CCCTCTGCCCCTCTTCACTT 61.204 60.000 0.00 0.00 0.00 3.16
50 51 1.614824 CCCTCTGCCCCTCTTCACT 60.615 63.158 0.00 0.00 0.00 3.41
51 52 2.674220 CCCCTCTGCCCCTCTTCAC 61.674 68.421 0.00 0.00 0.00 3.18
52 53 2.285668 CCCCTCTGCCCCTCTTCA 60.286 66.667 0.00 0.00 0.00 3.02
53 54 3.093172 CCCCCTCTGCCCCTCTTC 61.093 72.222 0.00 0.00 0.00 2.87
57 58 4.038804 TAAGCCCCCTCTGCCCCT 62.039 66.667 0.00 0.00 0.00 4.79
58 59 3.810188 GTAAGCCCCCTCTGCCCC 61.810 72.222 0.00 0.00 0.00 5.80
59 60 2.909292 TAGGTAAGCCCCCTCTGCCC 62.909 65.000 0.00 0.00 33.35 5.36
60 61 1.384082 TAGGTAAGCCCCCTCTGCC 60.384 63.158 0.00 0.00 33.35 4.85
61 62 0.691413 AGTAGGTAAGCCCCCTCTGC 60.691 60.000 0.00 0.00 33.35 4.26
62 63 1.486726 CAAGTAGGTAAGCCCCCTCTG 59.513 57.143 0.00 0.00 33.35 3.35
63 64 1.365028 TCAAGTAGGTAAGCCCCCTCT 59.635 52.381 0.00 0.00 33.35 3.69
64 65 1.875488 TCAAGTAGGTAAGCCCCCTC 58.125 55.000 0.00 0.00 33.35 4.30
65 66 2.127708 CATCAAGTAGGTAAGCCCCCT 58.872 52.381 0.00 0.00 36.04 4.79
66 67 1.844497 ACATCAAGTAGGTAAGCCCCC 59.156 52.381 0.00 0.00 34.57 5.40
67 68 3.646736 AACATCAAGTAGGTAAGCCCC 57.353 47.619 0.00 0.00 34.57 5.80
68 69 5.008712 GCAATAACATCAAGTAGGTAAGCCC 59.991 44.000 0.00 0.00 34.57 5.19
69 70 5.008712 GGCAATAACATCAAGTAGGTAAGCC 59.991 44.000 0.00 0.00 0.00 4.35
70 71 5.823045 AGGCAATAACATCAAGTAGGTAAGC 59.177 40.000 0.00 0.00 0.00 3.09
71 72 6.260936 CCAGGCAATAACATCAAGTAGGTAAG 59.739 42.308 0.00 0.00 0.00 2.34
72 73 6.119536 CCAGGCAATAACATCAAGTAGGTAA 58.880 40.000 0.00 0.00 0.00 2.85
73 74 5.190925 ACCAGGCAATAACATCAAGTAGGTA 59.809 40.000 0.00 0.00 0.00 3.08
74 75 4.018415 ACCAGGCAATAACATCAAGTAGGT 60.018 41.667 0.00 0.00 0.00 3.08
75 76 4.526970 ACCAGGCAATAACATCAAGTAGG 58.473 43.478 0.00 0.00 0.00 3.18
76 77 6.205464 CCATACCAGGCAATAACATCAAGTAG 59.795 42.308 0.00 0.00 0.00 2.57
77 78 6.061441 CCATACCAGGCAATAACATCAAGTA 58.939 40.000 0.00 0.00 0.00 2.24
78 79 4.889409 CCATACCAGGCAATAACATCAAGT 59.111 41.667 0.00 0.00 0.00 3.16
79 80 5.443185 CCATACCAGGCAATAACATCAAG 57.557 43.478 0.00 0.00 0.00 3.02
92 93 0.179000 GTGGTCAGAGCCATACCAGG 59.821 60.000 0.00 0.00 43.73 4.45
93 94 0.179000 GGTGGTCAGAGCCATACCAG 59.821 60.000 0.00 0.00 43.73 4.00
94 95 1.271840 GGGTGGTCAGAGCCATACCA 61.272 60.000 9.24 0.00 41.08 3.25
95 96 0.983378 AGGGTGGTCAGAGCCATACC 60.983 60.000 0.00 0.00 41.08 2.73
96 97 0.179000 CAGGGTGGTCAGAGCCATAC 59.821 60.000 0.00 0.00 41.08 2.39
97 98 0.252696 ACAGGGTGGTCAGAGCCATA 60.253 55.000 0.00 0.00 41.08 2.74
98 99 1.539869 ACAGGGTGGTCAGAGCCAT 60.540 57.895 0.00 0.00 41.08 4.40
99 100 2.122413 ACAGGGTGGTCAGAGCCA 60.122 61.111 0.00 0.00 35.83 4.75
100 101 2.665603 GACAGGGTGGTCAGAGCC 59.334 66.667 0.00 0.00 37.73 4.70
101 102 1.484444 AAGGACAGGGTGGTCAGAGC 61.484 60.000 0.00 0.00 39.59 4.09
102 103 1.827969 CTAAGGACAGGGTGGTCAGAG 59.172 57.143 0.00 0.00 39.59 3.35
103 104 1.431633 TCTAAGGACAGGGTGGTCAGA 59.568 52.381 0.00 0.00 39.59 3.27
104 105 1.938585 TCTAAGGACAGGGTGGTCAG 58.061 55.000 0.00 0.00 39.59 3.51
105 106 2.044492 AGATCTAAGGACAGGGTGGTCA 59.956 50.000 0.00 0.00 39.59 4.02
106 107 2.753247 AGATCTAAGGACAGGGTGGTC 58.247 52.381 0.00 0.00 37.06 4.02
107 108 2.950990 AGATCTAAGGACAGGGTGGT 57.049 50.000 0.00 0.00 0.00 4.16
108 109 3.379452 AGAAGATCTAAGGACAGGGTGG 58.621 50.000 0.00 0.00 0.00 4.61
109 110 5.428184 AAAGAAGATCTAAGGACAGGGTG 57.572 43.478 0.00 0.00 0.00 4.61
110 111 6.455690 AAAAAGAAGATCTAAGGACAGGGT 57.544 37.500 0.00 0.00 0.00 4.34
130 131 5.343307 AAAAGAAGGAGCTGCTTCAAAAA 57.657 34.783 38.79 0.00 25.85 1.94
131 132 5.594317 AGTAAAAGAAGGAGCTGCTTCAAAA 59.406 36.000 38.79 23.29 25.85 2.44
132 133 5.133221 AGTAAAAGAAGGAGCTGCTTCAAA 58.867 37.500 38.79 23.00 25.85 2.69
133 134 4.718961 AGTAAAAGAAGGAGCTGCTTCAA 58.281 39.130 38.79 23.29 25.85 2.69
134 135 4.357918 AGTAAAAGAAGGAGCTGCTTCA 57.642 40.909 38.79 22.31 25.85 3.02
135 136 5.456265 CAAAGTAAAAGAAGGAGCTGCTTC 58.544 41.667 33.61 33.61 25.85 3.86
136 137 4.279420 CCAAAGTAAAAGAAGGAGCTGCTT 59.721 41.667 21.55 21.55 29.06 3.91
137 138 3.823304 CCAAAGTAAAAGAAGGAGCTGCT 59.177 43.478 0.00 0.00 0.00 4.24
138 139 3.057245 CCCAAAGTAAAAGAAGGAGCTGC 60.057 47.826 0.00 0.00 0.00 5.25
139 140 3.507622 CCCCAAAGTAAAAGAAGGAGCTG 59.492 47.826 0.00 0.00 0.00 4.24
140 141 3.767711 CCCCAAAGTAAAAGAAGGAGCT 58.232 45.455 0.00 0.00 0.00 4.09
141 142 2.231478 GCCCCAAAGTAAAAGAAGGAGC 59.769 50.000 0.00 0.00 0.00 4.70
142 143 3.759086 GAGCCCCAAAGTAAAAGAAGGAG 59.241 47.826 0.00 0.00 0.00 3.69
143 144 3.499745 GGAGCCCCAAAGTAAAAGAAGGA 60.500 47.826 0.00 0.00 0.00 3.36
144 145 2.826128 GGAGCCCCAAAGTAAAAGAAGG 59.174 50.000 0.00 0.00 0.00 3.46
145 146 2.826128 GGGAGCCCCAAAGTAAAAGAAG 59.174 50.000 5.45 0.00 44.65 2.85
146 147 2.884320 GGGAGCCCCAAAGTAAAAGAA 58.116 47.619 5.45 0.00 44.65 2.52
147 148 2.597578 GGGAGCCCCAAAGTAAAAGA 57.402 50.000 5.45 0.00 44.65 2.52
162 163 2.930385 CTACACAGCCGCCATGGGAG 62.930 65.000 15.13 0.00 38.63 4.30
163 164 3.006133 TACACAGCCGCCATGGGA 61.006 61.111 15.13 0.00 38.63 4.37
164 165 2.514592 CTACACAGCCGCCATGGG 60.515 66.667 15.13 3.37 38.63 4.00
165 166 2.514592 CCTACACAGCCGCCATGG 60.515 66.667 7.63 7.63 42.50 3.66
166 167 1.522355 CTCCTACACAGCCGCCATG 60.522 63.158 0.00 0.00 0.00 3.66
167 168 2.735772 CCTCCTACACAGCCGCCAT 61.736 63.158 0.00 0.00 0.00 4.40
168 169 3.390521 CCTCCTACACAGCCGCCA 61.391 66.667 0.00 0.00 0.00 5.69
169 170 3.075005 TCCTCCTACACAGCCGCC 61.075 66.667 0.00 0.00 0.00 6.13
170 171 2.496817 CTCCTCCTACACAGCCGC 59.503 66.667 0.00 0.00 0.00 6.53
171 172 0.970937 TTCCTCCTCCTACACAGCCG 60.971 60.000 0.00 0.00 0.00 5.52
172 173 0.827368 CTTCCTCCTCCTACACAGCC 59.173 60.000 0.00 0.00 0.00 4.85
173 174 1.853963 TCTTCCTCCTCCTACACAGC 58.146 55.000 0.00 0.00 0.00 4.40
174 175 2.763448 CCTTCTTCCTCCTCCTACACAG 59.237 54.545 0.00 0.00 0.00 3.66
175 176 2.559931 CCCTTCTTCCTCCTCCTACACA 60.560 54.545 0.00 0.00 0.00 3.72
176 177 2.112190 CCCTTCTTCCTCCTCCTACAC 58.888 57.143 0.00 0.00 0.00 2.90
177 178 1.622725 GCCCTTCTTCCTCCTCCTACA 60.623 57.143 0.00 0.00 0.00 2.74
178 179 1.124780 GCCCTTCTTCCTCCTCCTAC 58.875 60.000 0.00 0.00 0.00 3.18
179 180 1.019650 AGCCCTTCTTCCTCCTCCTA 58.980 55.000 0.00 0.00 0.00 2.94
180 181 0.620121 CAGCCCTTCTTCCTCCTCCT 60.620 60.000 0.00 0.00 0.00 3.69
181 182 1.631071 CCAGCCCTTCTTCCTCCTCC 61.631 65.000 0.00 0.00 0.00 4.30
182 183 1.631071 CCCAGCCCTTCTTCCTCCTC 61.631 65.000 0.00 0.00 0.00 3.71
183 184 1.617839 CCCAGCCCTTCTTCCTCCT 60.618 63.158 0.00 0.00 0.00 3.69
184 185 2.684499 CCCCAGCCCTTCTTCCTCC 61.684 68.421 0.00 0.00 0.00 4.30
185 186 2.684499 CCCCCAGCCCTTCTTCCTC 61.684 68.421 0.00 0.00 0.00 3.71
186 187 2.615288 CCCCCAGCCCTTCTTCCT 60.615 66.667 0.00 0.00 0.00 3.36
200 201 1.630878 AGATCCAATAGAATCGCCCCC 59.369 52.381 0.00 0.00 0.00 5.40
201 202 2.355209 GGAGATCCAATAGAATCGCCCC 60.355 54.545 0.00 0.00 35.64 5.80
202 203 2.569404 AGGAGATCCAATAGAATCGCCC 59.431 50.000 0.92 0.00 38.89 6.13
203 204 3.971245 AGGAGATCCAATAGAATCGCC 57.029 47.619 0.92 0.00 38.89 5.54
204 205 4.928615 CAGAAGGAGATCCAATAGAATCGC 59.071 45.833 0.92 0.00 38.89 4.58
205 206 5.477510 CCAGAAGGAGATCCAATAGAATCG 58.522 45.833 0.92 0.00 38.89 3.34
206 207 5.244755 GCCAGAAGGAGATCCAATAGAATC 58.755 45.833 0.92 0.00 38.89 2.52
207 208 4.262808 CGCCAGAAGGAGATCCAATAGAAT 60.263 45.833 0.92 0.00 36.74 2.40
208 209 3.070159 CGCCAGAAGGAGATCCAATAGAA 59.930 47.826 0.92 0.00 36.74 2.10
209 210 2.630098 CGCCAGAAGGAGATCCAATAGA 59.370 50.000 0.92 0.00 36.74 1.98
210 211 2.366916 ACGCCAGAAGGAGATCCAATAG 59.633 50.000 0.92 0.00 38.21 1.73
211 212 2.103094 CACGCCAGAAGGAGATCCAATA 59.897 50.000 0.92 0.00 38.21 1.90
212 213 1.134280 CACGCCAGAAGGAGATCCAAT 60.134 52.381 0.92 0.00 38.21 3.16
213 214 0.250234 CACGCCAGAAGGAGATCCAA 59.750 55.000 0.92 0.00 38.21 3.53
214 215 1.900351 CACGCCAGAAGGAGATCCA 59.100 57.895 0.92 0.00 38.21 3.41
215 216 1.522580 GCACGCCAGAAGGAGATCC 60.523 63.158 0.00 0.00 38.21 3.36
216 217 0.809241 CTGCACGCCAGAAGGAGATC 60.809 60.000 0.00 0.00 44.64 2.75
217 218 1.220206 CTGCACGCCAGAAGGAGAT 59.780 57.895 0.00 0.00 44.64 2.75
218 219 2.659016 CTGCACGCCAGAAGGAGA 59.341 61.111 0.00 0.00 44.64 3.71
225 226 0.795085 CTTCTTCTTCTGCACGCCAG 59.205 55.000 0.00 0.00 43.17 4.85
226 227 0.392706 TCTTCTTCTTCTGCACGCCA 59.607 50.000 0.00 0.00 0.00 5.69
227 228 1.462670 CTTCTTCTTCTTCTGCACGCC 59.537 52.381 0.00 0.00 0.00 5.68
228 229 1.462670 CCTTCTTCTTCTTCTGCACGC 59.537 52.381 0.00 0.00 0.00 5.34
229 230 1.462670 GCCTTCTTCTTCTTCTGCACG 59.537 52.381 0.00 0.00 0.00 5.34
230 231 2.483491 CTGCCTTCTTCTTCTTCTGCAC 59.517 50.000 0.00 0.00 0.00 4.57
231 232 2.105477 ACTGCCTTCTTCTTCTTCTGCA 59.895 45.455 0.00 0.00 0.00 4.41
232 233 2.483491 CACTGCCTTCTTCTTCTTCTGC 59.517 50.000 0.00 0.00 0.00 4.26
233 234 3.497640 CACACTGCCTTCTTCTTCTTCTG 59.502 47.826 0.00 0.00 0.00 3.02
234 235 3.495806 CCACACTGCCTTCTTCTTCTTCT 60.496 47.826 0.00 0.00 0.00 2.85
235 236 2.810852 CCACACTGCCTTCTTCTTCTTC 59.189 50.000 0.00 0.00 0.00 2.87
236 237 2.487986 CCCACACTGCCTTCTTCTTCTT 60.488 50.000 0.00 0.00 0.00 2.52
237 238 1.072965 CCCACACTGCCTTCTTCTTCT 59.927 52.381 0.00 0.00 0.00 2.85
238 239 1.072331 TCCCACACTGCCTTCTTCTTC 59.928 52.381 0.00 0.00 0.00 2.87
239 240 1.072965 CTCCCACACTGCCTTCTTCTT 59.927 52.381 0.00 0.00 0.00 2.52
240 241 0.689623 CTCCCACACTGCCTTCTTCT 59.310 55.000 0.00 0.00 0.00 2.85
241 242 0.322008 CCTCCCACACTGCCTTCTTC 60.322 60.000 0.00 0.00 0.00 2.87
242 243 1.763770 CCTCCCACACTGCCTTCTT 59.236 57.895 0.00 0.00 0.00 2.52
243 244 2.227036 CCCTCCCACACTGCCTTCT 61.227 63.158 0.00 0.00 0.00 2.85
244 245 2.352805 CCCTCCCACACTGCCTTC 59.647 66.667 0.00 0.00 0.00 3.46
245 246 3.260100 CCCCTCCCACACTGCCTT 61.260 66.667 0.00 0.00 0.00 4.35
248 249 4.729918 CAGCCCCTCCCACACTGC 62.730 72.222 0.00 0.00 0.00 4.40
249 250 2.930019 TCAGCCCCTCCCACACTG 60.930 66.667 0.00 0.00 0.00 3.66
250 251 2.608988 CTCAGCCCCTCCCACACT 60.609 66.667 0.00 0.00 0.00 3.55
251 252 3.721706 CCTCAGCCCCTCCCACAC 61.722 72.222 0.00 0.00 0.00 3.82
314 315 4.966787 ATGCAAACCGCCCCACGT 62.967 61.111 0.00 0.00 41.33 4.49
315 316 3.625082 GAATGCAAACCGCCCCACG 62.625 63.158 0.00 0.00 41.33 4.94
316 317 2.261361 GAATGCAAACCGCCCCAC 59.739 61.111 0.00 0.00 41.33 4.61
317 318 2.117206 AGAATGCAAACCGCCCCA 59.883 55.556 0.00 0.00 41.33 4.96
318 319 1.815817 AACAGAATGCAAACCGCCCC 61.816 55.000 0.00 0.00 42.53 5.80
319 320 0.667184 CAACAGAATGCAAACCGCCC 60.667 55.000 0.00 0.00 42.53 6.13
320 321 0.667184 CCAACAGAATGCAAACCGCC 60.667 55.000 0.00 0.00 42.53 6.13
321 322 0.031994 ACCAACAGAATGCAAACCGC 59.968 50.000 0.00 0.00 42.53 5.68
322 323 1.602668 CCACCAACAGAATGCAAACCG 60.603 52.381 0.00 0.00 42.53 4.44
323 324 1.873486 GCCACCAACAGAATGCAAACC 60.873 52.381 0.00 0.00 42.53 3.27
324 325 1.501169 GCCACCAACAGAATGCAAAC 58.499 50.000 0.00 0.00 42.53 2.93
325 326 0.392336 GGCCACCAACAGAATGCAAA 59.608 50.000 0.00 0.00 42.53 3.68
326 327 1.804396 CGGCCACCAACAGAATGCAA 61.804 55.000 2.24 0.00 42.53 4.08
327 328 2.267351 CGGCCACCAACAGAATGCA 61.267 57.895 2.24 0.00 42.53 3.96
328 329 2.568090 CGGCCACCAACAGAATGC 59.432 61.111 2.24 0.00 42.53 3.56
329 330 1.926511 GAGCGGCCACCAACAGAATG 61.927 60.000 2.24 0.00 46.00 2.67
330 331 1.675641 GAGCGGCCACCAACAGAAT 60.676 57.895 2.24 0.00 0.00 2.40
331 332 2.281484 GAGCGGCCACCAACAGAA 60.281 61.111 2.24 0.00 0.00 3.02
332 333 4.680237 CGAGCGGCCACCAACAGA 62.680 66.667 2.24 0.00 0.00 3.41
333 334 3.958147 ATCGAGCGGCCACCAACAG 62.958 63.158 2.24 0.00 0.00 3.16
334 335 3.950794 GATCGAGCGGCCACCAACA 62.951 63.158 2.24 0.00 0.00 3.33
335 336 3.195698 GATCGAGCGGCCACCAAC 61.196 66.667 2.24 0.00 0.00 3.77
336 337 4.812476 CGATCGAGCGGCCACCAA 62.812 66.667 16.65 0.00 0.00 3.67
344 345 0.366871 CAAAACAGACCGATCGAGCG 59.633 55.000 17.57 17.57 0.00 5.03
345 346 0.721718 CCAAAACAGACCGATCGAGC 59.278 55.000 18.66 7.92 0.00 5.03
346 347 1.726791 CACCAAAACAGACCGATCGAG 59.273 52.381 18.66 9.42 0.00 4.04
347 348 1.606994 CCACCAAAACAGACCGATCGA 60.607 52.381 18.66 0.00 0.00 3.59
348 349 0.796312 CCACCAAAACAGACCGATCG 59.204 55.000 8.51 8.51 0.00 3.69
349 350 0.521735 GCCACCAAAACAGACCGATC 59.478 55.000 0.00 0.00 0.00 3.69
350 351 0.893727 GGCCACCAAAACAGACCGAT 60.894 55.000 0.00 0.00 0.00 4.18
351 352 1.527380 GGCCACCAAAACAGACCGA 60.527 57.895 0.00 0.00 0.00 4.69
352 353 2.903547 CGGCCACCAAAACAGACCG 61.904 63.158 2.24 0.00 0.00 4.79
353 354 2.561037 CCGGCCACCAAAACAGACC 61.561 63.158 2.24 0.00 0.00 3.85
354 355 1.792118 GACCGGCCACCAAAACAGAC 61.792 60.000 0.00 0.00 0.00 3.51
355 356 1.527380 GACCGGCCACCAAAACAGA 60.527 57.895 0.00 0.00 0.00 3.41
356 357 2.903547 CGACCGGCCACCAAAACAG 61.904 63.158 0.00 0.00 0.00 3.16
357 358 2.684192 ATCGACCGGCCACCAAAACA 62.684 55.000 0.00 0.00 0.00 2.83
358 359 1.918868 GATCGACCGGCCACCAAAAC 61.919 60.000 0.00 0.00 0.00 2.43
359 360 1.673009 GATCGACCGGCCACCAAAA 60.673 57.895 0.00 0.00 0.00 2.44
360 361 2.046700 GATCGACCGGCCACCAAA 60.047 61.111 0.00 0.00 0.00 3.28
361 362 4.444838 CGATCGACCGGCCACCAA 62.445 66.667 10.26 0.00 0.00 3.67
374 375 0.101939 GACTACCAACCCGACCGATC 59.898 60.000 0.00 0.00 0.00 3.69
375 376 1.325476 GGACTACCAACCCGACCGAT 61.325 60.000 0.00 0.00 35.97 4.18
376 377 1.978617 GGACTACCAACCCGACCGA 60.979 63.158 0.00 0.00 35.97 4.69
377 378 1.538687 AAGGACTACCAACCCGACCG 61.539 60.000 0.00 0.00 38.94 4.79
378 379 0.248565 GAAGGACTACCAACCCGACC 59.751 60.000 0.00 0.00 38.94 4.79
379 380 0.248565 GGAAGGACTACCAACCCGAC 59.751 60.000 0.00 0.00 38.94 4.79
380 381 0.115745 AGGAAGGACTACCAACCCGA 59.884 55.000 0.00 0.00 38.94 5.14
381 382 0.981943 AAGGAAGGACTACCAACCCG 59.018 55.000 0.00 0.00 38.94 5.28
382 383 3.074094 AGAAAAGGAAGGACTACCAACCC 59.926 47.826 0.00 0.00 38.94 4.11
383 384 4.072839 CAGAAAAGGAAGGACTACCAACC 58.927 47.826 0.00 0.00 38.94 3.77
384 385 4.715713 ACAGAAAAGGAAGGACTACCAAC 58.284 43.478 0.00 0.00 38.94 3.77
385 386 5.382664 AACAGAAAAGGAAGGACTACCAA 57.617 39.130 0.00 0.00 38.94 3.67
386 387 5.374071 GAAACAGAAAAGGAAGGACTACCA 58.626 41.667 0.00 0.00 38.94 3.25
387 388 4.451435 CGAAACAGAAAAGGAAGGACTACC 59.549 45.833 0.00 0.00 0.00 3.18
388 389 4.083961 GCGAAACAGAAAAGGAAGGACTAC 60.084 45.833 0.00 0.00 0.00 2.73
389 390 4.062991 GCGAAACAGAAAAGGAAGGACTA 58.937 43.478 0.00 0.00 0.00 2.59
390 391 2.879026 GCGAAACAGAAAAGGAAGGACT 59.121 45.455 0.00 0.00 0.00 3.85
391 392 2.349532 CGCGAAACAGAAAAGGAAGGAC 60.350 50.000 0.00 0.00 0.00 3.85
392 393 1.871039 CGCGAAACAGAAAAGGAAGGA 59.129 47.619 0.00 0.00 0.00 3.36
393 394 1.069227 CCGCGAAACAGAAAAGGAAGG 60.069 52.381 8.23 0.00 0.00 3.46
394 395 1.069227 CCCGCGAAACAGAAAAGGAAG 60.069 52.381 8.23 0.00 0.00 3.46
395 396 0.948678 CCCGCGAAACAGAAAAGGAA 59.051 50.000 8.23 0.00 0.00 3.36
396 397 0.887387 CCCCGCGAAACAGAAAAGGA 60.887 55.000 8.23 0.00 0.00 3.36
397 398 0.887387 TCCCCGCGAAACAGAAAAGG 60.887 55.000 8.23 0.00 0.00 3.11
398 399 0.948678 TTCCCCGCGAAACAGAAAAG 59.051 50.000 8.23 0.00 0.00 2.27
399 400 1.390565 TTTCCCCGCGAAACAGAAAA 58.609 45.000 8.23 0.00 35.49 2.29
400 401 1.335496 CTTTTCCCCGCGAAACAGAAA 59.665 47.619 8.23 6.29 40.23 2.52
401 402 0.948678 CTTTTCCCCGCGAAACAGAA 59.051 50.000 8.23 0.00 40.23 3.02
402 403 0.887387 CCTTTTCCCCGCGAAACAGA 60.887 55.000 8.23 0.00 40.23 3.41
403 404 1.579429 CCTTTTCCCCGCGAAACAG 59.421 57.895 8.23 1.24 40.23 3.16
404 405 1.899534 CCCTTTTCCCCGCGAAACA 60.900 57.895 8.23 0.00 40.23 2.83
405 406 2.632544 CCCCTTTTCCCCGCGAAAC 61.633 63.158 8.23 0.00 40.23 2.78
406 407 2.144859 ATCCCCTTTTCCCCGCGAAA 62.145 55.000 8.23 0.00 38.74 3.46
407 408 2.144859 AATCCCCTTTTCCCCGCGAA 62.145 55.000 8.23 0.00 0.00 4.70
408 409 2.144859 AAATCCCCTTTTCCCCGCGA 62.145 55.000 8.23 0.00 0.00 5.87
409 410 1.254975 AAAATCCCCTTTTCCCCGCG 61.255 55.000 0.00 0.00 31.23 6.46
410 411 0.535335 GAAAATCCCCTTTTCCCCGC 59.465 55.000 0.07 0.00 44.63 6.13
416 417 5.376625 GGCTGAAAAAGAAAATCCCCTTTT 58.623 37.500 0.00 0.00 42.42 2.27
417 418 4.503123 CGGCTGAAAAAGAAAATCCCCTTT 60.503 41.667 0.00 0.00 34.39 3.11
418 419 3.006859 CGGCTGAAAAAGAAAATCCCCTT 59.993 43.478 0.00 0.00 0.00 3.95
419 420 2.562738 CGGCTGAAAAAGAAAATCCCCT 59.437 45.455 0.00 0.00 0.00 4.79
420 421 2.353704 CCGGCTGAAAAAGAAAATCCCC 60.354 50.000 0.00 0.00 0.00 4.81
421 422 2.930887 GCCGGCTGAAAAAGAAAATCCC 60.931 50.000 22.15 0.00 0.00 3.85
422 423 2.337583 GCCGGCTGAAAAAGAAAATCC 58.662 47.619 22.15 0.00 0.00 3.01
423 424 2.288763 TGGCCGGCTGAAAAAGAAAATC 60.289 45.455 28.56 4.31 0.00 2.17
424 425 1.691434 TGGCCGGCTGAAAAAGAAAAT 59.309 42.857 28.56 0.00 0.00 1.82
425 426 1.115467 TGGCCGGCTGAAAAAGAAAA 58.885 45.000 28.56 0.00 0.00 2.29
426 427 1.337118 ATGGCCGGCTGAAAAAGAAA 58.663 45.000 28.56 0.00 0.00 2.52
427 428 1.272212 GAATGGCCGGCTGAAAAAGAA 59.728 47.619 28.56 1.10 0.00 2.52
428 429 0.887933 GAATGGCCGGCTGAAAAAGA 59.112 50.000 28.56 0.30 0.00 2.52
429 430 0.456653 CGAATGGCCGGCTGAAAAAG 60.457 55.000 28.56 8.40 0.00 2.27
430 431 1.583986 CGAATGGCCGGCTGAAAAA 59.416 52.632 28.56 5.65 0.00 1.94
431 432 2.339556 CCGAATGGCCGGCTGAAAA 61.340 57.895 28.56 7.61 43.25 2.29
432 433 2.749839 CCGAATGGCCGGCTGAAA 60.750 61.111 28.56 10.38 43.25 2.69
439 440 1.705337 CTAGTGCAACCGAATGGCCG 61.705 60.000 0.00 0.00 37.80 6.13
440 441 0.676782 ACTAGTGCAACCGAATGGCC 60.677 55.000 0.00 0.00 37.80 5.36
441 442 1.135689 CAACTAGTGCAACCGAATGGC 60.136 52.381 0.00 0.00 37.80 4.40
442 443 1.468520 CCAACTAGTGCAACCGAATGG 59.531 52.381 0.00 0.00 37.80 3.16
443 444 1.135689 GCCAACTAGTGCAACCGAATG 60.136 52.381 0.00 0.00 37.80 2.67
444 445 1.165270 GCCAACTAGTGCAACCGAAT 58.835 50.000 0.00 0.00 37.80 3.34
445 446 0.179043 TGCCAACTAGTGCAACCGAA 60.179 50.000 5.46 0.00 37.80 4.30
446 447 0.602638 CTGCCAACTAGTGCAACCGA 60.603 55.000 8.99 0.00 37.80 4.69
447 448 1.868997 CTGCCAACTAGTGCAACCG 59.131 57.895 8.99 0.00 37.80 4.44
448 449 1.581447 GCTGCCAACTAGTGCAACC 59.419 57.895 8.99 0.87 37.80 3.77
449 450 1.581447 GGCTGCCAACTAGTGCAAC 59.419 57.895 15.17 4.96 36.98 4.17
450 451 1.965930 CGGCTGCCAACTAGTGCAA 60.966 57.895 20.29 0.00 36.98 4.08
451 452 2.358615 CGGCTGCCAACTAGTGCA 60.359 61.111 20.29 7.58 35.86 4.57
452 453 3.127533 CCGGCTGCCAACTAGTGC 61.128 66.667 20.29 0.00 0.00 4.40
453 454 3.127533 GCCGGCTGCCAACTAGTG 61.128 66.667 22.15 0.00 0.00 2.74
462 463 3.447025 CTAGTAGGTGGCCGGCTGC 62.447 68.421 28.56 18.86 40.16 5.25
463 464 1.756950 TCTAGTAGGTGGCCGGCTG 60.757 63.158 28.56 5.59 0.00 4.85
464 465 1.757340 GTCTAGTAGGTGGCCGGCT 60.757 63.158 28.56 9.11 0.00 5.52
465 466 2.813200 GTCTAGTAGGTGGCCGGC 59.187 66.667 21.18 21.18 0.00 6.13
466 467 3.117372 CGTCTAGTAGGTGGCCGG 58.883 66.667 0.00 0.00 0.00 6.13
467 468 2.412112 GCGTCTAGTAGGTGGCCG 59.588 66.667 0.00 0.00 0.00 6.13
468 469 2.333706 GACGCGTCTAGTAGGTGGCC 62.334 65.000 31.12 0.00 0.00 5.36
469 470 1.063811 GACGCGTCTAGTAGGTGGC 59.936 63.158 31.12 0.67 0.00 5.01
470 471 0.747283 AGGACGCGTCTAGTAGGTGG 60.747 60.000 35.50 0.00 0.00 4.61
471 472 1.945387 TAGGACGCGTCTAGTAGGTG 58.055 55.000 35.50 0.00 0.00 4.00
472 473 2.926778 ATAGGACGCGTCTAGTAGGT 57.073 50.000 35.50 15.45 0.00 3.08
473 474 5.876612 AAATATAGGACGCGTCTAGTAGG 57.123 43.478 35.50 0.00 0.00 3.18
843 850 1.065854 CGGGGAGAAGAAGCTTCATGT 60.066 52.381 27.57 15.26 0.00 3.21
872 893 7.126421 AGTGCAATGGTAGATTATATAGGAGGG 59.874 40.741 0.00 0.00 0.00 4.30
887 908 2.279741 GAAGATCGCAGTGCAATGGTA 58.720 47.619 16.93 0.00 0.00 3.25
891 912 3.801698 AGTATGAAGATCGCAGTGCAAT 58.198 40.909 16.83 0.66 0.00 3.56
908 929 6.686632 GCACTAAGCTGGTTAGGAATGAGTAT 60.687 42.308 25.28 3.79 42.39 2.12
928 949 5.022282 TGATTTCGATGGAGATTGCACTA 57.978 39.130 0.00 0.00 0.00 2.74
930 951 4.825546 ATGATTTCGATGGAGATTGCAC 57.174 40.909 0.00 0.00 0.00 4.57
1136 1162 0.253327 CCTTTCCTCCCTTTCTCCCG 59.747 60.000 0.00 0.00 0.00 5.14
1241 1267 3.917760 GGATCCTCAGGACGCCCG 61.918 72.222 3.84 0.00 32.98 6.13
1329 1355 1.473258 CTCTCTCCTAGTGTGCTGCT 58.527 55.000 0.00 0.00 0.00 4.24
1589 1636 4.009002 GTGTAGTAATACCCCCGCAAAAA 58.991 43.478 0.00 0.00 0.00 1.94
1590 1637 3.008813 TGTGTAGTAATACCCCCGCAAAA 59.991 43.478 0.00 0.00 0.00 2.44
1591 1638 2.570752 TGTGTAGTAATACCCCCGCAAA 59.429 45.455 0.00 0.00 0.00 3.68
1592 1639 2.186243 TGTGTAGTAATACCCCCGCAA 58.814 47.619 0.00 0.00 0.00 4.85
1593 1640 1.863325 TGTGTAGTAATACCCCCGCA 58.137 50.000 0.00 0.00 0.00 5.69
1594 1641 3.480505 AATGTGTAGTAATACCCCCGC 57.519 47.619 0.00 0.00 0.00 6.13
1595 1642 5.026038 TGAAATGTGTAGTAATACCCCCG 57.974 43.478 0.00 0.00 0.00 5.73
1596 1643 7.340999 ACAATTGAAATGTGTAGTAATACCCCC 59.659 37.037 13.59 0.00 0.00 5.40
1597 1644 8.188139 CACAATTGAAATGTGTAGTAATACCCC 58.812 37.037 13.59 0.00 42.48 4.95
1741 1788 3.659786 TGTGTACTTCCTCGGTTTCATG 58.340 45.455 0.00 0.00 0.00 3.07
1749 1796 9.577110 TTACATTTATAGTTGTGTACTTCCTCG 57.423 33.333 0.00 0.00 38.33 4.63
1776 1868 8.994500 TGGAATGGTTGAATGTATTACTAGGTA 58.006 33.333 0.00 0.00 0.00 3.08
1823 1933 5.160607 AGAAACCTCGTTCACCATTATCA 57.839 39.130 0.00 0.00 0.00 2.15
1856 1966 6.987992 AGTGAAAAAGACGATAACCACACTTA 59.012 34.615 0.00 0.00 32.24 2.24
1877 1987 2.290705 TGGAGTCGGAGTCATACAGTGA 60.291 50.000 14.42 0.00 0.00 3.41
1885 1995 2.287977 TTCTCTTGGAGTCGGAGTCA 57.712 50.000 14.42 0.00 0.00 3.41
1952 2065 3.070159 GTCATAGCTAGGAGGTGCAATGA 59.930 47.826 8.65 0.00 0.00 2.57
1953 2066 3.397482 GTCATAGCTAGGAGGTGCAATG 58.603 50.000 8.65 0.00 0.00 2.82
1954 2067 2.370189 GGTCATAGCTAGGAGGTGCAAT 59.630 50.000 8.65 0.00 0.00 3.56
1955 2068 1.762957 GGTCATAGCTAGGAGGTGCAA 59.237 52.381 8.65 0.00 0.00 4.08
1956 2069 1.342975 TGGTCATAGCTAGGAGGTGCA 60.343 52.381 8.65 0.00 0.00 4.57
1957 2070 1.414158 TGGTCATAGCTAGGAGGTGC 58.586 55.000 8.65 0.00 0.00 5.01
1959 2072 2.090494 ACCATGGTCATAGCTAGGAGGT 60.090 50.000 13.00 9.65 0.00 3.85
1960 2073 2.301296 CACCATGGTCATAGCTAGGAGG 59.699 54.545 16.53 8.99 0.00 4.30
1961 2074 3.234353 TCACCATGGTCATAGCTAGGAG 58.766 50.000 16.53 0.00 0.00 3.69
2002 2115 6.979509 GCGTAAGGCGAGTTAAATATCATAG 58.020 40.000 0.00 0.00 44.77 2.23
2084 2198 1.621317 TGGAGGATTACTGCAACGTCA 59.379 47.619 0.00 0.00 45.18 4.35
2096 2210 3.377253 ACATGCACAATCTGGAGGATT 57.623 42.857 0.00 0.00 44.66 3.01
2099 2213 2.094906 CACAACATGCACAATCTGGAGG 60.095 50.000 0.00 0.00 0.00 4.30
2185 2299 4.585162 AGGATACCCTTTACATGTCTCTCG 59.415 45.833 0.00 0.00 40.78 4.04
2186 2300 7.784470 ATAGGATACCCTTTACATGTCTCTC 57.216 40.000 0.00 0.00 40.78 3.20
2253 2367 5.488341 TGGTAGCTTTCTGTCTTATTGTCC 58.512 41.667 0.00 0.00 0.00 4.02
2281 2395 9.188588 GACGATCAATCTGGTTTACGATATAAA 57.811 33.333 0.00 0.00 0.00 1.40
2302 2416 4.442375 ACACTCGAATGAAGAAGACGAT 57.558 40.909 0.00 0.00 32.81 3.73
2303 2417 3.917329 ACACTCGAATGAAGAAGACGA 57.083 42.857 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.