Multiple sequence alignment - TraesCS3B01G450700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G450700 chr3B 100.000 2692 0 0 1 2692 691289486 691286795 0.000000e+00 4972.0
1 TraesCS3B01G450700 chr3B 89.214 1437 93 29 718 2100 462046268 462047696 0.000000e+00 1738.0
2 TraesCS3B01G450700 chr3B 97.911 718 14 1 1 717 691304483 691303766 0.000000e+00 1242.0
3 TraesCS3B01G450700 chr3B 96.389 720 24 2 1 718 432780444 432781163 0.000000e+00 1184.0
4 TraesCS3B01G450700 chr3B 96.389 720 22 3 1 717 228926659 228927377 0.000000e+00 1182.0
5 TraesCS3B01G450700 chr3B 88.358 481 35 6 2165 2624 462048112 462048592 2.340000e-155 558.0
6 TraesCS3B01G450700 chr3B 81.579 114 12 6 764 868 36548647 36548760 4.780000e-13 86.1
7 TraesCS3B01G450700 chr6A 92.047 1949 83 23 718 2624 203600382 203602300 0.000000e+00 2675.0
8 TraesCS3B01G450700 chr1A 91.940 1948 82 22 718 2624 295024297 295026210 0.000000e+00 2658.0
9 TraesCS3B01G450700 chr5D 88.162 1850 121 41 723 2511 116618760 116620572 0.000000e+00 2113.0
10 TraesCS3B01G450700 chr6B 89.297 1523 100 23 1043 2511 431791896 431790383 0.000000e+00 1851.0
11 TraesCS3B01G450700 chr6B 96.111 720 25 3 1 717 366756711 366757430 0.000000e+00 1171.0
12 TraesCS3B01G450700 chr6B 96.111 720 24 3 3 718 434209945 434209226 0.000000e+00 1171.0
13 TraesCS3B01G450700 chr6B 86.765 204 22 4 2428 2630 91151411 91151212 3.490000e-54 222.0
14 TraesCS3B01G450700 chr4D 96.508 716 23 2 3 717 332039894 332039180 0.000000e+00 1182.0
15 TraesCS3B01G450700 chr4D 84.170 259 29 4 2153 2400 439145242 439145499 9.630000e-60 241.0
16 TraesCS3B01G450700 chr4B 96.499 714 22 3 3 715 214932356 214933067 0.000000e+00 1177.0
17 TraesCS3B01G450700 chr4B 86.000 200 22 5 2428 2625 519493476 519493671 2.720000e-50 209.0
18 TraesCS3B01G450700 chr2B 96.245 719 25 2 1 717 422266190 422266908 0.000000e+00 1177.0
19 TraesCS3B01G450700 chr2B 84.925 199 24 5 2428 2624 776451435 776451629 2.110000e-46 196.0
20 TraesCS3B01G450700 chr1B 96.229 716 26 1 3 717 331454867 331454152 0.000000e+00 1171.0
21 TraesCS3B01G450700 chr4A 79.512 615 79 18 1208 1780 404201702 404202311 6.990000e-106 394.0
22 TraesCS3B01G450700 chr3A 80.303 396 46 12 2015 2394 327829411 327829790 1.230000e-68 270.0
23 TraesCS3B01G450700 chr3A 80.723 166 13 11 723 870 30541071 30540907 7.880000e-21 111.0
24 TraesCS3B01G450700 chrUn 86.765 204 22 4 2428 2630 77417789 77417988 3.490000e-54 222.0
25 TraesCS3B01G450700 chr7A 83.582 201 21 7 2428 2626 646941996 646941806 7.660000e-41 178.0
26 TraesCS3B01G450700 chr1D 80.180 222 28 12 2408 2625 306625549 306625340 4.640000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G450700 chr3B 691286795 691289486 2691 True 4972 4972 100.000 1 2692 1 chr3B.!!$R1 2691
1 TraesCS3B01G450700 chr3B 691303766 691304483 717 True 1242 1242 97.911 1 717 1 chr3B.!!$R2 716
2 TraesCS3B01G450700 chr3B 432780444 432781163 719 False 1184 1184 96.389 1 718 1 chr3B.!!$F3 717
3 TraesCS3B01G450700 chr3B 228926659 228927377 718 False 1182 1182 96.389 1 717 1 chr3B.!!$F2 716
4 TraesCS3B01G450700 chr3B 462046268 462048592 2324 False 1148 1738 88.786 718 2624 2 chr3B.!!$F4 1906
5 TraesCS3B01G450700 chr6A 203600382 203602300 1918 False 2675 2675 92.047 718 2624 1 chr6A.!!$F1 1906
6 TraesCS3B01G450700 chr1A 295024297 295026210 1913 False 2658 2658 91.940 718 2624 1 chr1A.!!$F1 1906
7 TraesCS3B01G450700 chr5D 116618760 116620572 1812 False 2113 2113 88.162 723 2511 1 chr5D.!!$F1 1788
8 TraesCS3B01G450700 chr6B 431790383 431791896 1513 True 1851 1851 89.297 1043 2511 1 chr6B.!!$R2 1468
9 TraesCS3B01G450700 chr6B 366756711 366757430 719 False 1171 1171 96.111 1 717 1 chr6B.!!$F1 716
10 TraesCS3B01G450700 chr6B 434209226 434209945 719 True 1171 1171 96.111 3 718 1 chr6B.!!$R3 715
11 TraesCS3B01G450700 chr4D 332039180 332039894 714 True 1182 1182 96.508 3 717 1 chr4D.!!$R1 714
12 TraesCS3B01G450700 chr4B 214932356 214933067 711 False 1177 1177 96.499 3 715 1 chr4B.!!$F1 712
13 TraesCS3B01G450700 chr2B 422266190 422266908 718 False 1177 1177 96.245 1 717 1 chr2B.!!$F1 716
14 TraesCS3B01G450700 chr1B 331454152 331454867 715 True 1171 1171 96.229 3 717 1 chr1B.!!$R1 714
15 TraesCS3B01G450700 chr4A 404201702 404202311 609 False 394 394 79.512 1208 1780 1 chr4A.!!$F1 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
895 910 1.093159 GCTGATGTTCCAGAGCAAGG 58.907 55.0 0.0 0.0 36.29 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2635 3106 0.382873 TGCGTACGTGAGTTCACAGT 59.617 50.0 17.9 12.16 46.4 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
173 174 3.703052 GAGCAAGGGGTTCATCATCAATT 59.297 43.478 0.00 0.00 0.00 2.32
370 372 1.230324 AGACAAGGTTGCTTCTTCGC 58.770 50.000 0.00 0.00 0.00 4.70
465 467 2.104170 TGGATGTACGATAGCACCACA 58.896 47.619 0.00 0.00 42.67 4.17
895 910 1.093159 GCTGATGTTCCAGAGCAAGG 58.907 55.000 0.00 0.00 36.29 3.61
896 911 1.093159 CTGATGTTCCAGAGCAAGGC 58.907 55.000 0.00 0.00 36.29 4.35
1027 1042 2.357034 ACCGCGTGTGTTGCCTAG 60.357 61.111 4.92 0.00 0.00 3.02
1100 1118 0.180642 GTAACAAGGGAGGCTAGGGC 59.819 60.000 0.00 0.00 37.82 5.19
1116 1134 1.108132 GGGCGGACGAAGAGGATAGT 61.108 60.000 0.00 0.00 0.00 2.12
1133 1152 0.535102 AGTGAAACCTGGAAGCGTGG 60.535 55.000 0.00 0.00 37.80 4.94
1171 1196 0.846693 CCCAAGCAGCCCTAACCTAT 59.153 55.000 0.00 0.00 0.00 2.57
1231 1256 6.238211 GCATTGCTTCTGTACACTACTAATGG 60.238 42.308 0.16 0.00 0.00 3.16
1594 1675 3.891366 GCATCCCTTAACACAGGCATAAT 59.109 43.478 0.00 0.00 31.69 1.28
1639 1730 6.969043 TGGAACATAAGGTGGAGAATTACAT 58.031 36.000 0.00 0.00 0.00 2.29
1648 1739 6.415573 AGGTGGAGAATTACATTAGGTTGTC 58.584 40.000 0.00 0.00 0.00 3.18
1709 1802 7.252612 TCAATAGATTCATATTAAGGCCCGA 57.747 36.000 0.00 0.00 0.00 5.14
1745 1839 9.311916 GATGCCAAACATATTTTATGCTACAAA 57.688 29.630 0.00 0.00 39.84 2.83
1760 1855 3.371595 GCTACAAATGTATGTCAGGGGGT 60.372 47.826 0.00 0.00 34.75 4.95
1900 1996 4.853924 TCTCTTGTCCATTTTTCTTGGC 57.146 40.909 0.00 0.00 34.06 4.52
1958 2055 9.903682 CCAGTGAGCTTCCATAAATTAATAATG 57.096 33.333 0.00 0.00 0.00 1.90
2201 2648 8.621532 TTCTTAGATGCACAAACTTGTATCTT 57.378 30.769 11.31 0.00 43.94 2.40
2221 2668 6.932356 TCTTGGAACTCTGATGAATTATGC 57.068 37.500 0.00 0.00 0.00 3.14
2283 2733 1.680735 TCCACACACACTTGCATTTCC 59.319 47.619 0.00 0.00 0.00 3.13
2405 2873 9.074576 ACCTCAAATTTAGTTTAGTTTGGTAGG 57.925 33.333 0.00 0.00 34.38 3.18
2414 2885 9.856162 TTAGTTTAGTTTGGTAGGTGATCTTTT 57.144 29.630 0.00 0.00 0.00 2.27
2496 2967 9.057089 GTCATTTGTATGAGTTAGGAATTAGGG 57.943 37.037 0.00 0.00 41.33 3.53
2561 3032 7.381678 GGTAGGTTTTCGTTATGATAGCACTAG 59.618 40.741 0.00 0.00 0.00 2.57
2626 3097 3.729716 GCACGTGCATACTTACTAGTAGC 59.270 47.826 34.52 0.72 40.09 3.58
2627 3098 4.288531 CACGTGCATACTTACTAGTAGCC 58.711 47.826 0.82 0.00 40.09 3.93
2628 3099 4.036498 CACGTGCATACTTACTAGTAGCCT 59.964 45.833 0.82 0.00 40.09 4.58
2629 3100 5.237996 CACGTGCATACTTACTAGTAGCCTA 59.762 44.000 0.82 0.00 40.09 3.93
2630 3101 5.469421 ACGTGCATACTTACTAGTAGCCTAG 59.531 44.000 2.23 0.34 45.27 3.02
2631 3102 5.699915 CGTGCATACTTACTAGTAGCCTAGA 59.300 44.000 2.23 0.00 42.90 2.43
2632 3103 6.204301 CGTGCATACTTACTAGTAGCCTAGAA 59.796 42.308 2.23 0.00 42.90 2.10
2633 3104 7.255035 CGTGCATACTTACTAGTAGCCTAGAAA 60.255 40.741 2.23 0.00 42.90 2.52
2634 3105 7.861872 GTGCATACTTACTAGTAGCCTAGAAAC 59.138 40.741 2.23 0.00 42.90 2.78
2635 3106 7.558807 TGCATACTTACTAGTAGCCTAGAAACA 59.441 37.037 2.23 0.00 42.90 2.83
2636 3107 7.861872 GCATACTTACTAGTAGCCTAGAAACAC 59.138 40.741 2.23 0.00 42.90 3.32
2637 3108 9.122779 CATACTTACTAGTAGCCTAGAAACACT 57.877 37.037 2.23 0.00 42.90 3.55
2638 3109 7.393841 ACTTACTAGTAGCCTAGAAACACTG 57.606 40.000 2.23 0.00 42.90 3.66
2639 3110 6.947158 ACTTACTAGTAGCCTAGAAACACTGT 59.053 38.462 2.23 0.00 42.90 3.55
2640 3111 5.646577 ACTAGTAGCCTAGAAACACTGTG 57.353 43.478 6.19 6.19 42.90 3.66
2641 3112 5.322754 ACTAGTAGCCTAGAAACACTGTGA 58.677 41.667 15.86 0.00 42.90 3.58
2642 3113 5.773680 ACTAGTAGCCTAGAAACACTGTGAA 59.226 40.000 15.86 0.00 42.90 3.18
2643 3114 4.884247 AGTAGCCTAGAAACACTGTGAAC 58.116 43.478 15.86 5.28 0.00 3.18
2644 3115 4.589374 AGTAGCCTAGAAACACTGTGAACT 59.411 41.667 15.86 12.03 0.00 3.01
2645 3116 3.996480 AGCCTAGAAACACTGTGAACTC 58.004 45.455 15.86 7.51 0.00 3.01
2646 3117 3.388024 AGCCTAGAAACACTGTGAACTCA 59.612 43.478 15.86 0.00 0.00 3.41
2647 3118 3.495001 GCCTAGAAACACTGTGAACTCAC 59.505 47.826 15.86 2.78 46.59 3.51
2659 3130 4.835199 GTGAACTCACGTACGCAATTAT 57.165 40.909 16.72 0.00 37.10 1.28
2660 3131 4.807961 GTGAACTCACGTACGCAATTATC 58.192 43.478 16.72 7.81 37.10 1.75
2661 3132 3.544682 TGAACTCACGTACGCAATTATCG 59.455 43.478 16.72 0.00 0.00 2.92
2662 3133 3.409851 ACTCACGTACGCAATTATCGA 57.590 42.857 16.72 0.00 0.00 3.59
2663 3134 3.961182 ACTCACGTACGCAATTATCGAT 58.039 40.909 16.72 2.16 0.00 3.59
2664 3135 5.099484 ACTCACGTACGCAATTATCGATA 57.901 39.130 16.72 0.00 0.00 2.92
2665 3136 5.513376 ACTCACGTACGCAATTATCGATAA 58.487 37.500 19.63 19.63 0.00 1.75
2666 3137 6.147581 ACTCACGTACGCAATTATCGATAAT 58.852 36.000 22.22 22.22 34.59 1.28
2667 3138 6.087687 ACTCACGTACGCAATTATCGATAATG 59.912 38.462 27.01 21.05 33.51 1.90
2668 3139 5.916320 TCACGTACGCAATTATCGATAATGT 59.084 36.000 27.01 22.09 33.51 2.71
2669 3140 7.076983 TCACGTACGCAATTATCGATAATGTA 58.923 34.615 27.01 21.24 33.51 2.29
2670 3141 7.059831 TCACGTACGCAATTATCGATAATGTAC 59.940 37.037 27.58 27.58 33.51 2.90
2671 3142 6.306356 ACGTACGCAATTATCGATAATGTACC 59.694 38.462 29.17 20.24 32.10 3.34
2672 3143 6.306117 CGTACGCAATTATCGATAATGTACCA 59.694 38.462 29.17 17.30 32.10 3.25
2673 3144 7.148934 CGTACGCAATTATCGATAATGTACCAA 60.149 37.037 29.17 16.47 32.10 3.67
2674 3145 6.884187 ACGCAATTATCGATAATGTACCAAC 58.116 36.000 27.01 12.76 33.51 3.77
2675 3146 6.704493 ACGCAATTATCGATAATGTACCAACT 59.296 34.615 27.01 9.59 33.51 3.16
2676 3147 7.868922 ACGCAATTATCGATAATGTACCAACTA 59.131 33.333 27.01 0.00 33.51 2.24
2677 3148 8.869897 CGCAATTATCGATAATGTACCAACTAT 58.130 33.333 27.01 8.30 33.51 2.12
2678 3149 9.973246 GCAATTATCGATAATGTACCAACTATG 57.027 33.333 27.01 18.54 33.51 2.23
2679 3150 9.973246 CAATTATCGATAATGTACCAACTATGC 57.027 33.333 27.01 0.00 33.51 3.14
2680 3151 8.718102 ATTATCGATAATGTACCAACTATGCC 57.282 34.615 26.02 0.00 32.07 4.40
2681 3152 5.801531 TCGATAATGTACCAACTATGCCT 57.198 39.130 0.00 0.00 0.00 4.75
2682 3153 6.904463 TCGATAATGTACCAACTATGCCTA 57.096 37.500 0.00 0.00 0.00 3.93
2683 3154 7.292713 TCGATAATGTACCAACTATGCCTAA 57.707 36.000 0.00 0.00 0.00 2.69
2684 3155 7.375834 TCGATAATGTACCAACTATGCCTAAG 58.624 38.462 0.00 0.00 0.00 2.18
2685 3156 6.590292 CGATAATGTACCAACTATGCCTAAGG 59.410 42.308 0.00 0.00 0.00 2.69
2686 3157 5.710409 AATGTACCAACTATGCCTAAGGT 57.290 39.130 0.00 0.00 0.00 3.50
2687 3158 6.818281 AATGTACCAACTATGCCTAAGGTA 57.182 37.500 0.00 0.00 0.00 3.08
2688 3159 6.818281 ATGTACCAACTATGCCTAAGGTAA 57.182 37.500 0.00 0.00 33.80 2.85
2689 3160 6.623979 TGTACCAACTATGCCTAAGGTAAA 57.376 37.500 0.00 0.00 33.80 2.01
2690 3161 7.202972 TGTACCAACTATGCCTAAGGTAAAT 57.797 36.000 0.00 0.00 33.80 1.40
2691 3162 7.051623 TGTACCAACTATGCCTAAGGTAAATG 58.948 38.462 0.00 0.00 33.80 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
173 174 5.935945 TCTCCAAGAAGTAACAAATGGTGA 58.064 37.500 0.00 0.00 0.00 4.02
465 467 3.666274 TGTTTTGTCGTGGTTCCGATAT 58.334 40.909 0.00 0.00 39.34 1.63
795 802 8.484214 TCTATTTCTAATCATGCCACTACTCT 57.516 34.615 0.00 0.00 0.00 3.24
895 910 0.607489 ACCACATGCAGGTCAAGAGC 60.607 55.000 0.00 0.00 32.90 4.09
896 911 1.901591 AACCACATGCAGGTCAAGAG 58.098 50.000 0.00 0.00 38.76 2.85
1027 1042 0.528466 TCGGATCTCACTGATTGCGC 60.528 55.000 0.00 0.00 35.14 6.09
1056 1073 2.123077 ATCCCCTCTCTGCCTCCG 60.123 66.667 0.00 0.00 0.00 4.63
1100 1118 3.436496 GTTTCACTATCCTCTTCGTCCG 58.564 50.000 0.00 0.00 0.00 4.79
1116 1134 0.817634 CACCACGCTTCCAGGTTTCA 60.818 55.000 0.00 0.00 32.15 2.69
1231 1256 8.771766 GTTCCTTCCGAAATATAATCCTACAAC 58.228 37.037 0.00 0.00 30.39 3.32
1409 1458 5.593679 AGTTGATATGTACGTAGCACCTT 57.406 39.130 12.46 0.00 0.00 3.50
1538 1590 6.548441 AGAAAATTGTGATGCAAAATGTGG 57.452 33.333 0.00 0.00 40.91 4.17
1594 1675 1.982958 GGGTCTGACCAAGGTTTCCTA 59.017 52.381 26.94 0.00 41.02 2.94
1639 1730 6.053005 ACTTTCAAAGATGTCGACAACCTAA 58.947 36.000 24.13 10.87 0.00 2.69
1648 1739 6.869421 AACAAACAACTTTCAAAGATGTCG 57.131 33.333 12.99 10.05 42.75 4.35
1745 1839 3.186283 TGTAACACCCCCTGACATACAT 58.814 45.455 0.00 0.00 0.00 2.29
1760 1855 7.333423 GTCATTAGCCTTGTGATAACTGTAACA 59.667 37.037 0.00 0.00 0.00 2.41
1838 1934 4.696877 CAGAAGTTGATGACATGCACCTTA 59.303 41.667 0.00 0.00 0.00 2.69
1927 2024 1.830587 ATGGAAGCTCACTGGTGCGA 61.831 55.000 0.00 0.00 38.51 5.10
2063 2160 3.490933 CCAGTCAGAGAACTCGTTGACAA 60.491 47.826 19.07 0.00 34.09 3.18
2201 2648 5.114764 TGGCATAATTCATCAGAGTTCCA 57.885 39.130 0.00 0.00 0.00 3.53
2221 2668 5.840243 TTCCACATAAGCTGATCAAATGG 57.160 39.130 0.00 0.00 0.00 3.16
2359 2811 7.629157 TGAGGTACACTATTTCCAATCATGAA 58.371 34.615 0.00 0.00 0.00 2.57
2361 2813 7.864108 TTGAGGTACACTATTTCCAATCATG 57.136 36.000 0.00 0.00 0.00 3.07
2362 2814 9.479549 AATTTGAGGTACACTATTTCCAATCAT 57.520 29.630 0.00 0.00 0.00 2.45
2405 2873 6.182039 TGCTTAGCATGTACAAAAGATCAC 57.818 37.500 1.39 0.00 31.71 3.06
2414 2885 3.949132 TGTCCATTGCTTAGCATGTACA 58.051 40.909 8.05 9.01 38.76 2.90
2455 2926 5.723295 ACAAATGACTGGAAATATTGTGCC 58.277 37.500 0.00 0.00 0.00 5.01
2624 3095 3.388024 TGAGTTCACAGTGTTTCTAGGCT 59.612 43.478 0.00 0.00 0.00 4.58
2625 3096 3.495001 GTGAGTTCACAGTGTTTCTAGGC 59.505 47.826 7.37 0.00 45.75 3.93
2626 3097 3.736252 CGTGAGTTCACAGTGTTTCTAGG 59.264 47.826 12.33 0.00 46.75 3.02
2627 3098 4.360563 ACGTGAGTTCACAGTGTTTCTAG 58.639 43.478 12.33 0.00 46.40 2.43
2628 3099 4.380841 ACGTGAGTTCACAGTGTTTCTA 57.619 40.909 12.33 0.00 46.40 2.10
2629 3100 3.247006 ACGTGAGTTCACAGTGTTTCT 57.753 42.857 12.33 0.00 46.40 2.52
2630 3101 3.061403 CGTACGTGAGTTCACAGTGTTTC 60.061 47.826 7.22 0.00 46.40 2.78
2631 3102 2.855963 CGTACGTGAGTTCACAGTGTTT 59.144 45.455 7.22 0.00 46.40 2.83
2632 3103 2.456989 CGTACGTGAGTTCACAGTGTT 58.543 47.619 7.22 0.00 46.40 3.32
2633 3104 1.862815 GCGTACGTGAGTTCACAGTGT 60.863 52.381 17.90 0.00 46.40 3.55
2634 3105 0.776451 GCGTACGTGAGTTCACAGTG 59.224 55.000 17.90 0.00 46.40 3.66
2635 3106 0.382873 TGCGTACGTGAGTTCACAGT 59.617 50.000 17.90 12.16 46.40 3.55
2636 3107 1.483316 TTGCGTACGTGAGTTCACAG 58.517 50.000 17.90 7.57 46.40 3.66
2637 3108 2.143008 ATTGCGTACGTGAGTTCACA 57.857 45.000 17.90 0.12 46.40 3.58
2638 3109 4.545706 CGATAATTGCGTACGTGAGTTCAC 60.546 45.833 17.90 2.16 46.40 3.18
2639 3110 3.544682 CGATAATTGCGTACGTGAGTTCA 59.455 43.478 17.90 1.71 46.40 3.18
2640 3111 3.787634 TCGATAATTGCGTACGTGAGTTC 59.212 43.478 17.90 6.65 46.40 3.01
2641 3112 3.761657 TCGATAATTGCGTACGTGAGTT 58.238 40.909 17.90 9.40 46.40 3.01
2642 3113 6.087687 CATTATCGATAATTGCGTACGTGAGT 59.912 38.462 24.71 7.61 38.30 3.41
2643 3114 6.087687 ACATTATCGATAATTGCGTACGTGAG 59.912 38.462 24.71 13.05 30.91 3.51
2644 3115 5.916320 ACATTATCGATAATTGCGTACGTGA 59.084 36.000 24.71 6.14 30.91 4.35
2645 3116 6.136007 ACATTATCGATAATTGCGTACGTG 57.864 37.500 24.71 15.48 30.91 4.49
2646 3117 6.306356 GGTACATTATCGATAATTGCGTACGT 59.694 38.462 28.73 22.81 34.18 3.57
2647 3118 6.306117 TGGTACATTATCGATAATTGCGTACG 59.694 38.462 28.73 19.95 34.18 3.67
2648 3119 7.571089 TGGTACATTATCGATAATTGCGTAC 57.429 36.000 28.46 28.46 33.45 3.67
2649 3120 7.868922 AGTTGGTACATTATCGATAATTGCGTA 59.131 33.333 24.71 20.18 39.30 4.42
2650 3121 6.704493 AGTTGGTACATTATCGATAATTGCGT 59.296 34.615 24.71 21.04 39.30 5.24
2651 3122 7.117241 AGTTGGTACATTATCGATAATTGCG 57.883 36.000 24.71 17.12 39.30 4.85
2652 3123 9.973246 CATAGTTGGTACATTATCGATAATTGC 57.027 33.333 24.71 18.44 39.30 3.56
2653 3124 9.973246 GCATAGTTGGTACATTATCGATAATTG 57.027 33.333 24.71 20.88 39.30 2.32
2654 3125 9.162764 GGCATAGTTGGTACATTATCGATAATT 57.837 33.333 24.71 18.24 39.30 1.40
2655 3126 8.540388 AGGCATAGTTGGTACATTATCGATAAT 58.460 33.333 22.22 22.22 39.30 1.28
2656 3127 7.903145 AGGCATAGTTGGTACATTATCGATAA 58.097 34.615 19.63 19.63 39.30 1.75
2657 3128 7.476540 AGGCATAGTTGGTACATTATCGATA 57.523 36.000 0.00 0.00 39.30 2.92
2658 3129 6.360370 AGGCATAGTTGGTACATTATCGAT 57.640 37.500 2.16 2.16 39.30 3.59
2659 3130 5.801531 AGGCATAGTTGGTACATTATCGA 57.198 39.130 0.00 0.00 39.30 3.59
2660 3131 6.590292 CCTTAGGCATAGTTGGTACATTATCG 59.410 42.308 0.00 0.00 39.30 2.92
2661 3132 7.450903 ACCTTAGGCATAGTTGGTACATTATC 58.549 38.462 0.00 0.00 39.30 1.75
2662 3133 7.388638 ACCTTAGGCATAGTTGGTACATTAT 57.611 36.000 0.00 0.00 39.30 1.28
2663 3134 6.818281 ACCTTAGGCATAGTTGGTACATTA 57.182 37.500 0.00 0.00 39.30 1.90
2664 3135 5.710409 ACCTTAGGCATAGTTGGTACATT 57.290 39.130 0.00 0.00 39.30 2.71
2665 3136 6.818281 TTACCTTAGGCATAGTTGGTACAT 57.182 37.500 0.00 0.00 39.30 2.29
2666 3137 6.623979 TTTACCTTAGGCATAGTTGGTACA 57.376 37.500 0.00 0.10 30.86 2.90
2667 3138 7.492352 CATTTACCTTAGGCATAGTTGGTAC 57.508 40.000 0.00 0.00 30.86 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.