Multiple sequence alignment - TraesCS3B01G450500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G450500 chr3B 100.000 4157 0 0 1 4157 690879526 690875370 0.000000e+00 7677.0
1 TraesCS3B01G450500 chr3B 97.368 38 1 0 4004 4041 197731152 197731189 9.650000e-07 65.8
2 TraesCS3B01G450500 chr3B 100.000 34 0 0 2252 2285 164025537 164025570 3.470000e-06 63.9
3 TraesCS3B01G450500 chr3B 100.000 34 0 0 2252 2285 354923162 354923195 3.470000e-06 63.9
4 TraesCS3B01G450500 chr3B 97.143 35 1 0 2252 2286 561099005 561098971 4.490000e-05 60.2
5 TraesCS3B01G450500 chr3D 87.082 2632 156 73 687 3246 523784782 523782263 0.000000e+00 2808.0
6 TraesCS3B01G450500 chr3D 88.679 424 40 1 1 416 523785592 523785169 1.030000e-140 510.0
7 TraesCS3B01G450500 chr3D 89.714 175 17 1 414 587 550509597 550509423 5.410000e-54 222.0
8 TraesCS3B01G450500 chr3D 83.846 130 17 2 2061 2188 607526901 607526774 2.030000e-23 121.0
9 TraesCS3B01G450500 chr3D 95.122 41 2 0 1930 1970 1138615 1138655 9.650000e-07 65.8
10 TraesCS3B01G450500 chr3A 88.406 759 36 21 2525 3246 658701839 658701096 0.000000e+00 867.0
11 TraesCS3B01G450500 chr3A 89.815 648 42 9 1466 2103 658702857 658702224 0.000000e+00 809.0
12 TraesCS3B01G450500 chr3A 92.135 534 25 10 3633 4157 658700451 658699926 0.000000e+00 737.0
13 TraesCS3B01G450500 chr3A 91.958 286 18 5 3360 3640 658700916 658700631 3.010000e-106 396.0
14 TraesCS3B01G450500 chr3A 93.878 245 9 4 1175 1415 658703099 658702857 8.490000e-97 364.0
15 TraesCS3B01G450500 chr3A 84.518 394 21 11 726 1092 658703476 658703096 1.840000e-93 353.0
16 TraesCS3B01G450500 chr3A 90.278 72 4 2 3885 3956 324283049 324282981 1.590000e-14 91.6
17 TraesCS3B01G450500 chr3A 76.190 168 31 4 3987 4148 610456606 610456442 3.440000e-11 80.5
18 TraesCS3B01G450500 chr3A 92.683 41 3 0 1930 1970 8146922 8146882 4.490000e-05 60.2
19 TraesCS3B01G450500 chr2D 81.477 772 86 32 2627 3351 243140040 243140801 7.750000e-162 580.0
20 TraesCS3B01G450500 chr2D 89.552 268 24 3 2360 2624 243120825 243121091 1.850000e-88 337.0
21 TraesCS3B01G450500 chr2D 84.100 239 26 7 976 1213 243115744 243115971 1.950000e-53 220.0
22 TraesCS3B01G450500 chr2D 88.506 174 12 3 1 166 123119274 123119101 1.960000e-48 204.0
23 TraesCS3B01G450500 chr2D 80.000 275 44 10 3365 3636 172409660 172409394 4.240000e-45 193.0
24 TraesCS3B01G450500 chr4D 78.341 434 68 15 2 414 20430665 20431093 1.480000e-64 257.0
25 TraesCS3B01G450500 chr4D 84.314 255 18 10 1 239 468535173 468535421 3.230000e-56 230.0
26 TraesCS3B01G450500 chr4D 88.333 180 19 2 407 586 93336677 93336854 9.050000e-52 215.0
27 TraesCS3B01G450500 chr4D 80.224 268 44 8 3365 3628 416060963 416060701 4.240000e-45 193.0
28 TraesCS3B01G450500 chr4D 84.932 146 12 2 1 138 486816556 486816699 5.600000e-29 139.0
29 TraesCS3B01G450500 chr4D 83.846 130 17 2 2061 2188 298295294 298295421 2.030000e-23 121.0
30 TraesCS3B01G450500 chr4B 79.688 384 47 20 2 362 142041310 142040935 8.920000e-62 248.0
31 TraesCS3B01G450500 chr1B 77.982 436 62 23 2 414 467901241 467901665 4.150000e-60 243.0
32 TraesCS3B01G450500 chr1B 84.810 79 6 5 602 675 551725763 551725840 1.600000e-09 75.0
33 TraesCS3B01G450500 chrUn 77.419 434 71 16 2 414 240149197 240149624 2.500000e-57 233.0
34 TraesCS3B01G450500 chrUn 77.419 434 71 16 2 414 263945448 263945021 2.500000e-57 233.0
35 TraesCS3B01G450500 chrUn 79.121 273 45 11 3359 3627 67348991 67348727 1.190000e-40 178.0
36 TraesCS3B01G450500 chrUn 83.846 130 17 2 2061 2188 96170673 96170546 2.030000e-23 121.0
37 TraesCS3B01G450500 chrUn 83.846 130 17 2 2061 2188 457931622 457931495 2.030000e-23 121.0
38 TraesCS3B01G450500 chr5D 77.397 438 62 25 2 413 487509935 487509509 4.180000e-55 226.0
39 TraesCS3B01G450500 chr5D 88.764 178 19 1 414 591 559625934 559625758 2.520000e-52 217.0
40 TraesCS3B01G450500 chr5D 84.483 174 19 2 1 166 522837709 522837536 9.250000e-37 165.0
41 TraesCS3B01G450500 chr5D 86.076 79 7 4 600 675 481167553 481167476 9.580000e-12 82.4
42 TraesCS3B01G450500 chr5D 85.135 74 9 2 600 672 26301547 26301619 1.600000e-09 75.0
43 TraesCS3B01G450500 chr1A 89.773 176 18 0 414 589 344464746 344464921 4.180000e-55 226.0
44 TraesCS3B01G450500 chr1A 86.070 201 23 5 406 603 493208156 493207958 1.170000e-50 211.0
45 TraesCS3B01G450500 chr1A 82.627 236 36 5 3395 3627 591613221 591612988 1.960000e-48 204.0
46 TraesCS3B01G450500 chr1A 88.158 76 7 2 602 676 77272794 77272720 5.720000e-14 89.8
47 TraesCS3B01G450500 chr6D 89.385 179 18 1 407 585 104041333 104041156 1.500000e-54 224.0
48 TraesCS3B01G450500 chr6D 87.931 174 13 1 1 166 158463875 158464048 9.120000e-47 198.0
49 TraesCS3B01G450500 chr6D 97.143 35 0 1 2252 2286 27663438 27663405 1.610000e-04 58.4
50 TraesCS3B01G450500 chr4A 77.381 420 65 21 4 403 699005852 699005443 5.410000e-54 222.0
51 TraesCS3B01G450500 chr1D 90.533 169 15 1 411 579 84712224 84712057 5.410000e-54 222.0
52 TraesCS3B01G450500 chr1D 90.000 170 17 0 414 583 9218373 9218204 1.950000e-53 220.0
53 TraesCS3B01G450500 chr1D 80.899 267 41 9 3365 3627 493486108 493485848 7.050000e-48 202.0
54 TraesCS3B01G450500 chr1D 83.846 130 17 2 2061 2188 132657829 132657702 2.030000e-23 121.0
55 TraesCS3B01G450500 chr1D 97.917 48 1 0 592 639 199331107 199331060 2.660000e-12 84.2
56 TraesCS3B01G450500 chr7A 89.266 177 17 2 405 580 156115830 156116005 1.950000e-53 220.0
57 TraesCS3B01G450500 chr6B 83.137 255 23 10 2 239 297296013 297295762 9.050000e-52 215.0
58 TraesCS3B01G450500 chr6B 100.000 34 0 0 2252 2285 4312901 4312868 3.470000e-06 63.9
59 TraesCS3B01G450500 chr2A 82.031 256 28 8 2 239 48784577 48784832 7.050000e-48 202.0
60 TraesCS3B01G450500 chr2A 80.695 259 43 6 3380 3636 177658431 177658684 1.180000e-45 195.0
61 TraesCS3B01G450500 chr2A 88.158 76 7 2 602 675 61385989 61385914 5.720000e-14 89.8
62 TraesCS3B01G450500 chr2B 80.150 267 44 8 3365 3629 225571375 225571634 1.530000e-44 191.0
63 TraesCS3B01G450500 chr2B 83.077 130 18 4 2061 2188 520223270 520223143 9.440000e-22 115.0
64 TraesCS3B01G450500 chr2B 86.076 79 10 1 595 672 656942021 656941943 2.660000e-12 84.2
65 TraesCS3B01G450500 chr5B 79.926 269 40 10 3366 3629 327083788 327083529 7.100000e-43 185.0
66 TraesCS3B01G450500 chr5B 79.239 289 39 13 2 271 600086712 600086426 9.180000e-42 182.0
67 TraesCS3B01G450500 chr5B 97.143 35 1 0 2251 2285 600518255 600518289 4.490000e-05 60.2
68 TraesCS3B01G450500 chr7D 85.632 174 17 4 1 166 536428919 536428746 4.270000e-40 176.0
69 TraesCS3B01G450500 chr7D 83.846 130 17 2 2061 2188 451519015 451518888 2.030000e-23 121.0
70 TraesCS3B01G450500 chr7D 83.846 130 17 2 2061 2188 530038409 530038282 2.030000e-23 121.0
71 TraesCS3B01G450500 chr7D 83.846 130 17 2 2061 2188 603117581 603117454 2.030000e-23 121.0
72 TraesCS3B01G450500 chr7D 92.063 63 3 2 602 663 225203081 225203142 2.060000e-13 87.9
73 TraesCS3B01G450500 chr7D 100.000 34 0 0 2252 2285 448351004 448350971 3.470000e-06 63.9
74 TraesCS3B01G450500 chr6A 88.608 79 5 3 3885 3963 29623218 29623292 4.420000e-15 93.5
75 TraesCS3B01G450500 chr7B 85.507 69 5 3 595 663 709824121 709824058 2.680000e-07 67.6
76 TraesCS3B01G450500 chr7B 100.000 35 0 0 2251 2285 174144729 174144695 9.650000e-07 65.8
77 TraesCS3B01G450500 chr5A 100.000 32 0 0 2257 2288 90044683 90044652 4.490000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G450500 chr3B 690875370 690879526 4156 True 7677.000000 7677 100.000000 1 4157 1 chr3B.!!$R2 4156
1 TraesCS3B01G450500 chr3D 523782263 523785592 3329 True 1659.000000 2808 87.880500 1 3246 2 chr3D.!!$R3 3245
2 TraesCS3B01G450500 chr3A 658699926 658703476 3550 True 587.666667 867 90.118333 726 4157 6 chr3A.!!$R4 3431
3 TraesCS3B01G450500 chr2D 243140040 243140801 761 False 580.000000 580 81.477000 2627 3351 1 chr2D.!!$F3 724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.184692 TCCAGTGCCAACAATCACCA 59.815 50.0 0.00 0.00 33.90 4.17 F
44 45 0.318441 ATCACCATATCGCGTCCAGG 59.682 55.0 5.77 7.45 0.00 4.45 F
941 1186 0.321122 CCTGCTCCACACCTCACTTC 60.321 60.0 0.00 0.00 0.00 3.01 F
2118 2411 0.038166 TCCACATGGCCTTCTTGTCC 59.962 55.0 3.32 0.00 32.28 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1136 1381 0.459759 GTTAGTCAGCAGGGCGGTAC 60.460 60.0 0.0 0.0 0.00 3.34 R
1137 1382 0.613853 AGTTAGTCAGCAGGGCGGTA 60.614 55.0 0.0 0.0 0.00 4.02 R
2877 3277 0.035176 GCCTGCAAATGGGAAGCAAA 59.965 50.0 0.0 0.0 37.89 3.68 R
3317 3747 0.693622 TCCGAATTGTGTAAGGCCCA 59.306 50.0 0.0 0.0 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 0.184692 TCCAGTGCCAACAATCACCA 59.815 50.000 0.00 0.00 33.90 4.17
32 33 1.203038 TCCAGTGCCAACAATCACCAT 60.203 47.619 0.00 0.00 33.90 3.55
44 45 0.318441 ATCACCATATCGCGTCCAGG 59.682 55.000 5.77 7.45 0.00 4.45
51 52 3.521605 TCGCGTCCAGGGATAGTG 58.478 61.111 5.77 0.00 36.85 2.74
75 84 7.380602 GTGTCCATTCATCTTTCTCAAAGTTTG 59.619 37.037 9.44 9.44 39.52 2.93
76 85 6.865205 GTCCATTCATCTTTCTCAAAGTTTGG 59.135 38.462 15.47 6.74 39.52 3.28
142 151 3.633986 CCACAAGGCATAATTCCTCTTCC 59.366 47.826 0.00 0.00 32.45 3.46
144 153 4.891756 CACAAGGCATAATTCCTCTTCCAT 59.108 41.667 0.00 0.00 32.45 3.41
145 154 5.361857 CACAAGGCATAATTCCTCTTCCATT 59.638 40.000 0.00 0.00 32.45 3.16
156 165 2.659428 CTCTTCCATTGGATTGTCCCC 58.341 52.381 6.15 0.00 35.03 4.81
157 166 1.287739 TCTTCCATTGGATTGTCCCCC 59.712 52.381 6.15 0.00 35.03 5.40
167 176 1.413077 GATTGTCCCCCTAGAGAACGG 59.587 57.143 0.00 0.00 0.00 4.44
187 196 1.263217 GCGAGTCTCGATCTCTTCCTC 59.737 57.143 26.11 0.00 43.74 3.71
192 201 5.607477 GAGTCTCGATCTCTTCCTCTTCTA 58.393 45.833 9.55 0.00 0.00 2.10
193 202 6.187727 AGTCTCGATCTCTTCCTCTTCTAT 57.812 41.667 0.00 0.00 0.00 1.98
209 218 3.784701 TCTATGTTGTTCGCTCTCTCC 57.215 47.619 0.00 0.00 0.00 3.71
213 222 0.524862 GTTGTTCGCTCTCTCCGGTA 59.475 55.000 0.00 0.00 0.00 4.02
225 234 1.093159 CTCCGGTAGTTCTAGCGTGT 58.907 55.000 23.19 0.00 39.06 4.49
241 250 2.981805 GCGTGTGTGATAACGTGTTCTA 59.018 45.455 0.00 0.00 41.76 2.10
276 285 8.830580 GGAAAACTTCTATTGATCGATCATTGA 58.169 33.333 27.75 21.04 36.56 2.57
299 308 7.897920 TGAAAAGTACAATTTATACGCTACGG 58.102 34.615 0.00 0.00 0.00 4.02
316 325 0.446616 CGGAGAGACACGACGATCAA 59.553 55.000 0.00 0.00 0.00 2.57
326 335 1.204704 ACGACGATCAAAGGAGATGCA 59.795 47.619 0.00 0.00 0.00 3.96
331 340 1.534595 GATCAAAGGAGATGCATCGGC 59.465 52.381 20.67 16.13 41.68 5.54
340 349 2.329539 GATGCATCGGCTCCAGGGAA 62.330 60.000 11.68 0.00 41.91 3.97
394 403 2.652095 CGACGGTTTGGGCTAGGGA 61.652 63.158 0.00 0.00 0.00 4.20
399 408 1.064685 CGGTTTGGGCTAGGGAAGATT 60.065 52.381 0.00 0.00 0.00 2.40
418 451 9.286170 GGAAGATTTTCCCCTATTTACATACTC 57.714 37.037 3.55 0.00 46.03 2.59
420 453 7.756614 AGATTTTCCCCTATTTACATACTCCC 58.243 38.462 0.00 0.00 0.00 4.30
422 455 6.758806 TTTCCCCTATTTACATACTCCCTC 57.241 41.667 0.00 0.00 0.00 4.30
429 462 2.077687 TACATACTCCCTCCGTTCCC 57.922 55.000 0.00 0.00 0.00 3.97
449 648 9.983804 CGTTCCCAAATATAAGTCTTTTTAGAC 57.016 33.333 0.00 0.00 39.00 2.59
462 661 9.736023 AAGTCTTTTTAGACATTTTAGCAAGTG 57.264 29.630 7.92 0.00 41.02 3.16
463 662 9.120538 AGTCTTTTTAGACATTTTAGCAAGTGA 57.879 29.630 7.92 0.00 41.02 3.41
464 663 9.170584 GTCTTTTTAGACATTTTAGCAAGTGAC 57.829 33.333 0.00 0.00 38.59 3.67
465 664 8.349983 TCTTTTTAGACATTTTAGCAAGTGACC 58.650 33.333 0.00 0.00 0.00 4.02
466 665 7.575414 TTTTAGACATTTTAGCAAGTGACCA 57.425 32.000 0.00 0.00 0.00 4.02
467 666 6.554334 TTAGACATTTTAGCAAGTGACCAC 57.446 37.500 0.00 0.00 0.00 4.16
468 667 3.498397 AGACATTTTAGCAAGTGACCACG 59.502 43.478 0.00 0.00 36.20 4.94
469 668 3.211045 ACATTTTAGCAAGTGACCACGT 58.789 40.909 0.00 0.00 36.20 4.49
470 669 4.382291 ACATTTTAGCAAGTGACCACGTA 58.618 39.130 0.00 0.00 36.20 3.57
471 670 4.212636 ACATTTTAGCAAGTGACCACGTAC 59.787 41.667 0.00 0.00 36.20 3.67
518 717 7.435488 ACACTCTAAAATATGTCTACACGCATC 59.565 37.037 0.00 0.00 0.00 3.91
519 718 7.649705 CACTCTAAAATATGTCTACACGCATCT 59.350 37.037 0.00 0.00 0.00 2.90
524 723 7.875316 AAATATGTCTACACGCATCTGTATC 57.125 36.000 0.00 0.00 0.00 2.24
526 725 4.983671 TGTCTACACGCATCTGTATCTT 57.016 40.909 0.00 0.00 0.00 2.40
529 728 5.355910 TGTCTACACGCATCTGTATCTTGTA 59.644 40.000 0.00 0.00 0.00 2.41
530 729 5.910166 GTCTACACGCATCTGTATCTTGTAG 59.090 44.000 0.00 0.00 37.41 2.74
531 730 4.720649 ACACGCATCTGTATCTTGTAGT 57.279 40.909 0.00 0.00 0.00 2.73
532 731 4.673441 ACACGCATCTGTATCTTGTAGTC 58.327 43.478 0.00 0.00 0.00 2.59
533 732 4.045104 CACGCATCTGTATCTTGTAGTCC 58.955 47.826 0.00 0.00 0.00 3.85
536 735 5.163405 ACGCATCTGTATCTTGTAGTCCATT 60.163 40.000 0.00 0.00 0.00 3.16
537 736 5.755375 CGCATCTGTATCTTGTAGTCCATTT 59.245 40.000 0.00 0.00 0.00 2.32
538 737 6.292542 CGCATCTGTATCTTGTAGTCCATTTG 60.293 42.308 0.00 0.00 0.00 2.32
539 738 6.763135 GCATCTGTATCTTGTAGTCCATTTGA 59.237 38.462 0.00 0.00 0.00 2.69
543 742 9.166173 TCTGTATCTTGTAGTCCATTTGAAATG 57.834 33.333 10.84 10.84 0.00 2.32
545 744 9.952030 TGTATCTTGTAGTCCATTTGAAATGTA 57.048 29.630 15.93 0.00 0.00 2.29
579 778 6.848562 AACATTTAGGAATGGAGGGAGTAT 57.151 37.500 4.39 0.00 45.56 2.12
580 779 7.947782 AACATTTAGGAATGGAGGGAGTATA 57.052 36.000 4.39 0.00 45.56 1.47
581 780 8.525729 AACATTTAGGAATGGAGGGAGTATAT 57.474 34.615 4.39 0.00 45.56 0.86
583 782 8.386264 ACATTTAGGAATGGAGGGAGTATATTG 58.614 37.037 4.39 0.00 45.56 1.90
585 784 9.629649 ATTTAGGAATGGAGGGAGTATATTGTA 57.370 33.333 0.00 0.00 0.00 2.41
586 785 9.455144 TTTAGGAATGGAGGGAGTATATTGTAA 57.545 33.333 0.00 0.00 0.00 2.41
587 786 9.629649 TTAGGAATGGAGGGAGTATATTGTAAT 57.370 33.333 0.00 0.00 0.00 1.89
588 787 8.525729 AGGAATGGAGGGAGTATATTGTAATT 57.474 34.615 0.00 0.00 0.00 1.40
589 788 9.629649 AGGAATGGAGGGAGTATATTGTAATTA 57.370 33.333 0.00 0.00 0.00 1.40
612 811 8.716674 TTAATCTTAACATATACTCCCTCCGT 57.283 34.615 0.00 0.00 0.00 4.69
613 812 6.837471 ATCTTAACATATACTCCCTCCGTC 57.163 41.667 0.00 0.00 0.00 4.79
614 813 5.075493 TCTTAACATATACTCCCTCCGTCC 58.925 45.833 0.00 0.00 0.00 4.79
615 814 2.305858 ACATATACTCCCTCCGTCCC 57.694 55.000 0.00 0.00 0.00 4.46
616 815 1.502039 ACATATACTCCCTCCGTCCCA 59.498 52.381 0.00 0.00 0.00 4.37
617 816 2.090943 ACATATACTCCCTCCGTCCCAA 60.091 50.000 0.00 0.00 0.00 4.12
618 817 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
619 818 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
620 819 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
621 820 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
622 821 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
623 822 2.645797 ACTCCCTCCGTCCCAAAATAAA 59.354 45.455 0.00 0.00 0.00 1.40
624 823 3.268595 ACTCCCTCCGTCCCAAAATAAAT 59.731 43.478 0.00 0.00 0.00 1.40
625 824 3.626930 TCCCTCCGTCCCAAAATAAATG 58.373 45.455 0.00 0.00 0.00 2.32
626 825 3.010808 TCCCTCCGTCCCAAAATAAATGT 59.989 43.478 0.00 0.00 0.00 2.71
627 826 3.380320 CCCTCCGTCCCAAAATAAATGTC 59.620 47.826 0.00 0.00 0.00 3.06
628 827 4.270008 CCTCCGTCCCAAAATAAATGTCT 58.730 43.478 0.00 0.00 0.00 3.41
629 828 4.705023 CCTCCGTCCCAAAATAAATGTCTT 59.295 41.667 0.00 0.00 0.00 3.01
630 829 5.883673 CCTCCGTCCCAAAATAAATGTCTTA 59.116 40.000 0.00 0.00 0.00 2.10
631 830 6.376018 CCTCCGTCCCAAAATAAATGTCTTAA 59.624 38.462 0.00 0.00 0.00 1.85
632 831 7.385778 TCCGTCCCAAAATAAATGTCTTAAG 57.614 36.000 0.00 0.00 0.00 1.85
633 832 6.033966 CCGTCCCAAAATAAATGTCTTAAGC 58.966 40.000 0.00 0.00 0.00 3.09
634 833 6.127730 CCGTCCCAAAATAAATGTCTTAAGCT 60.128 38.462 0.00 0.00 0.00 3.74
635 834 7.312899 CGTCCCAAAATAAATGTCTTAAGCTT 58.687 34.615 3.48 3.48 0.00 3.74
636 835 8.455682 CGTCCCAAAATAAATGTCTTAAGCTTA 58.544 33.333 0.86 0.86 0.00 3.09
637 836 9.788960 GTCCCAAAATAAATGTCTTAAGCTTAG 57.211 33.333 6.24 1.77 0.00 2.18
638 837 9.528489 TCCCAAAATAAATGTCTTAAGCTTAGT 57.472 29.630 6.24 0.00 0.00 2.24
639 838 9.573133 CCCAAAATAAATGTCTTAAGCTTAGTG 57.427 33.333 6.24 4.43 0.00 2.74
648 847 9.555727 AATGTCTTAAGCTTAGTGTAAAGTTGA 57.444 29.630 6.24 0.00 0.00 3.18
649 848 8.589335 TGTCTTAAGCTTAGTGTAAAGTTGAG 57.411 34.615 6.24 0.00 0.00 3.02
650 849 8.418662 TGTCTTAAGCTTAGTGTAAAGTTGAGA 58.581 33.333 6.24 0.00 0.00 3.27
651 850 8.701540 GTCTTAAGCTTAGTGTAAAGTTGAGAC 58.298 37.037 6.24 8.25 32.72 3.36
652 851 8.418662 TCTTAAGCTTAGTGTAAAGTTGAGACA 58.581 33.333 6.24 0.00 0.00 3.41
653 852 6.846325 AAGCTTAGTGTAAAGTTGAGACAC 57.154 37.500 0.00 7.54 43.08 3.67
662 861 8.782533 GTGTAAAGTTGAGACACTTATTTTGG 57.217 34.615 8.13 0.00 40.26 3.28
663 862 8.617809 GTGTAAAGTTGAGACACTTATTTTGGA 58.382 33.333 8.13 0.00 40.26 3.53
664 863 9.179909 TGTAAAGTTGAGACACTTATTTTGGAA 57.820 29.630 0.00 0.00 35.87 3.53
665 864 9.665264 GTAAAGTTGAGACACTTATTTTGGAAG 57.335 33.333 0.00 0.00 35.87 3.46
666 865 6.884280 AGTTGAGACACTTATTTTGGAAGG 57.116 37.500 0.00 0.00 0.00 3.46
667 866 6.601332 AGTTGAGACACTTATTTTGGAAGGA 58.399 36.000 0.00 0.00 0.00 3.36
668 867 7.060421 AGTTGAGACACTTATTTTGGAAGGAA 58.940 34.615 0.00 0.00 0.00 3.36
669 868 7.229506 AGTTGAGACACTTATTTTGGAAGGAAG 59.770 37.037 0.00 0.00 0.00 3.46
670 869 6.003950 TGAGACACTTATTTTGGAAGGAAGG 58.996 40.000 0.00 0.00 0.00 3.46
671 870 6.183361 TGAGACACTTATTTTGGAAGGAAGGA 60.183 38.462 0.00 0.00 0.00 3.36
672 871 6.794534 AGACACTTATTTTGGAAGGAAGGAT 58.205 36.000 0.00 0.00 0.00 3.24
673 872 7.928873 AGACACTTATTTTGGAAGGAAGGATA 58.071 34.615 0.00 0.00 0.00 2.59
674 873 8.560903 AGACACTTATTTTGGAAGGAAGGATAT 58.439 33.333 0.00 0.00 0.00 1.63
675 874 8.753497 ACACTTATTTTGGAAGGAAGGATATC 57.247 34.615 0.00 0.00 0.00 1.63
694 913 0.716108 CGACTCATTCTGTTGGTCGC 59.284 55.000 0.00 0.00 41.99 5.19
706 925 3.046390 TGTTGGTCGCGCATTTAAAAAG 58.954 40.909 8.75 0.00 0.00 2.27
737 956 2.421220 AAAAATGGTTGGTCGCGGT 58.579 47.368 6.13 0.00 0.00 5.68
868 1091 3.005261 CCAGATCTGCGTCTGTATTAGCT 59.995 47.826 17.76 0.00 43.22 3.32
879 1112 3.632604 TCTGTATTAGCTAGCTCGCACTT 59.367 43.478 23.26 0.00 0.00 3.16
941 1186 0.321122 CCTGCTCCACACCTCACTTC 60.321 60.000 0.00 0.00 0.00 3.01
942 1187 0.668706 CTGCTCCACACCTCACTTCG 60.669 60.000 0.00 0.00 0.00 3.79
962 1207 1.602888 CCAGCAGAGCAAGCAACCT 60.603 57.895 0.00 0.00 0.00 3.50
964 1209 1.670406 AGCAGAGCAAGCAACCTCG 60.670 57.895 0.00 0.00 33.39 4.63
965 1210 2.684843 GCAGAGCAAGCAACCTCGG 61.685 63.158 0.00 0.00 33.39 4.63
966 1211 1.004560 CAGAGCAAGCAACCTCGGA 60.005 57.895 0.00 0.00 33.39 4.55
968 1213 1.188219 AGAGCAAGCAACCTCGGAGA 61.188 55.000 6.58 0.00 33.39 3.71
985 1230 3.005261 CGGAGAGAGAGAGAGAGAGAGAG 59.995 56.522 0.00 0.00 0.00 3.20
1136 1381 1.299773 GAAGCTCGCCTGATCTCGG 60.300 63.158 0.00 0.00 0.00 4.63
1137 1382 2.010582 GAAGCTCGCCTGATCTCGGT 62.011 60.000 0.00 0.00 0.00 4.69
1273 1530 4.200283 CGCGCTCCTCCTCCTCAC 62.200 72.222 5.56 0.00 0.00 3.51
1277 1534 2.043450 CTCCTCCTCCTCACCGCT 60.043 66.667 0.00 0.00 0.00 5.52
1390 1651 7.171630 TCTTCCTCTTCTCATGGTAAACTAC 57.828 40.000 0.00 0.00 0.00 2.73
1394 1655 8.660295 TCCTCTTCTCATGGTAAACTACTTTA 57.340 34.615 0.00 0.00 0.00 1.85
1450 1711 2.339694 CGCATGACGTAGCTCATAATCG 59.660 50.000 0.00 0.00 36.87 3.34
1459 1720 2.292267 AGCTCATAATCGGCCAACAAG 58.708 47.619 2.24 0.00 0.00 3.16
1460 1721 1.268743 GCTCATAATCGGCCAACAAGC 60.269 52.381 2.24 0.00 0.00 4.01
1526 1787 2.348591 CGTCAGTTCAGTTTTCCGCTTC 60.349 50.000 0.00 0.00 0.00 3.86
1528 1789 2.872245 TCAGTTCAGTTTTCCGCTTCTG 59.128 45.455 0.00 0.00 0.00 3.02
1617 1878 7.639113 ACTTTAGACCTCACTTCAGATCTAG 57.361 40.000 0.00 0.00 0.00 2.43
1640 1907 1.909302 TGAGGTTGGGGTTCAGATCTC 59.091 52.381 0.00 0.00 0.00 2.75
1642 1909 2.169561 GAGGTTGGGGTTCAGATCTCTC 59.830 54.545 0.00 0.00 0.00 3.20
1644 1911 2.169561 GGTTGGGGTTCAGATCTCTCTC 59.830 54.545 0.00 0.00 0.00 3.20
1646 1913 3.025322 TGGGGTTCAGATCTCTCTCTC 57.975 52.381 0.00 0.00 0.00 3.20
1684 1951 3.721035 GATTCTGCTGCTGGTTTGTTTT 58.279 40.909 6.69 0.00 0.00 2.43
1685 1952 4.556501 CGATTCTGCTGCTGGTTTGTTTTA 60.557 41.667 6.69 0.00 0.00 1.52
1695 1962 5.128827 TGCTGGTTTGTTTTATGTTGGGTTA 59.871 36.000 0.00 0.00 0.00 2.85
1759 2031 1.271102 AGAGTCGAGTGCCTTCTGAAC 59.729 52.381 0.00 0.00 0.00 3.18
1766 2038 0.179018 GTGCCTTCTGAACTGGGTGT 60.179 55.000 0.00 0.00 0.00 4.16
1854 2137 1.032014 TTGCCAAGGCTGAACAGTTC 58.968 50.000 12.96 6.32 42.51 3.01
1885 2168 9.555727 TTCTCTGTTTGTGCTAAATTTAGTAGT 57.444 29.630 22.94 0.00 33.32 2.73
1886 2169 9.555727 TCTCTGTTTGTGCTAAATTTAGTAGTT 57.444 29.630 22.94 0.00 33.32 2.24
1887 2170 9.813080 CTCTGTTTGTGCTAAATTTAGTAGTTC 57.187 33.333 22.94 10.26 33.32 3.01
1923 2206 5.587443 TCTGTTATGGAGATGCAGAATTGTG 59.413 40.000 0.00 0.00 33.84 3.33
1924 2207 4.096833 TGTTATGGAGATGCAGAATTGTGC 59.903 41.667 20.04 20.04 44.27 4.57
1960 2243 9.930693 CCTTAGATCTGTTATAAGTTGGGTATC 57.069 37.037 5.18 0.00 0.00 2.24
1972 2257 5.878406 AGTTGGGTATCGAATCTCTTGAT 57.122 39.130 0.00 0.00 33.70 2.57
2041 2334 6.663953 AGTAGCTCTTATTGAACTGGTACTGA 59.336 38.462 0.00 0.00 37.35 3.41
2057 2350 5.163141 TGGTACTGATGTTCCTTTTTCTCCA 60.163 40.000 0.00 0.00 35.08 3.86
2065 2358 2.043992 TCCTTTTTCTCCACACTCCGA 58.956 47.619 0.00 0.00 0.00 4.55
2096 2389 5.772004 AGCTCCTCCTCTTCTTCTATGTTA 58.228 41.667 0.00 0.00 0.00 2.41
2097 2390 6.381250 AGCTCCTCCTCTTCTTCTATGTTAT 58.619 40.000 0.00 0.00 0.00 1.89
2098 2391 6.493458 AGCTCCTCCTCTTCTTCTATGTTATC 59.507 42.308 0.00 0.00 0.00 1.75
2099 2392 6.493458 GCTCCTCCTCTTCTTCTATGTTATCT 59.507 42.308 0.00 0.00 0.00 1.98
2100 2393 7.309194 GCTCCTCCTCTTCTTCTATGTTATCTC 60.309 44.444 0.00 0.00 0.00 2.75
2101 2394 7.007723 TCCTCCTCTTCTTCTATGTTATCTCC 58.992 42.308 0.00 0.00 0.00 3.71
2102 2395 6.780031 CCTCCTCTTCTTCTATGTTATCTCCA 59.220 42.308 0.00 0.00 0.00 3.86
2103 2396 7.255801 CCTCCTCTTCTTCTATGTTATCTCCAC 60.256 44.444 0.00 0.00 0.00 4.02
2104 2397 7.126061 TCCTCTTCTTCTATGTTATCTCCACA 58.874 38.462 0.00 0.00 0.00 4.17
2105 2398 7.786943 TCCTCTTCTTCTATGTTATCTCCACAT 59.213 37.037 0.00 0.00 38.45 3.21
2106 2399 7.871973 CCTCTTCTTCTATGTTATCTCCACATG 59.128 40.741 0.00 0.00 35.57 3.21
2107 2400 7.730084 TCTTCTTCTATGTTATCTCCACATGG 58.270 38.462 0.00 0.00 35.57 3.66
2108 2401 5.858381 TCTTCTATGTTATCTCCACATGGC 58.142 41.667 0.00 0.00 35.57 4.40
2109 2402 4.623932 TCTATGTTATCTCCACATGGCC 57.376 45.455 0.00 0.00 35.57 5.36
2110 2403 4.234550 TCTATGTTATCTCCACATGGCCT 58.765 43.478 3.32 0.00 35.57 5.19
2111 2404 3.959495 ATGTTATCTCCACATGGCCTT 57.041 42.857 3.32 0.00 33.42 4.35
2112 2405 3.281727 TGTTATCTCCACATGGCCTTC 57.718 47.619 3.32 0.00 34.44 3.46
2113 2406 2.846206 TGTTATCTCCACATGGCCTTCT 59.154 45.455 3.32 0.00 34.44 2.85
2114 2407 3.266772 TGTTATCTCCACATGGCCTTCTT 59.733 43.478 3.32 0.00 34.44 2.52
2115 2408 2.431954 ATCTCCACATGGCCTTCTTG 57.568 50.000 3.32 0.00 34.44 3.02
2116 2409 1.067295 TCTCCACATGGCCTTCTTGT 58.933 50.000 3.32 0.00 34.55 3.16
2117 2410 1.003580 TCTCCACATGGCCTTCTTGTC 59.996 52.381 3.32 0.00 32.28 3.18
2118 2411 0.038166 TCCACATGGCCTTCTTGTCC 59.962 55.000 3.32 0.00 32.28 4.02
2131 2424 4.202409 CCTTCTTGTCCTCCTCCATAATCC 60.202 50.000 0.00 0.00 0.00 3.01
2182 2477 2.202797 CCCGTCTCCAGCATCACG 60.203 66.667 0.00 0.00 0.00 4.35
2245 2597 9.310449 TGTAGTATCCTCTTATTTCATACTCCC 57.690 37.037 0.00 0.00 33.36 4.30
2246 2598 9.536510 GTAGTATCCTCTTATTTCATACTCCCT 57.463 37.037 0.00 0.00 33.36 4.20
2247 2599 8.658840 AGTATCCTCTTATTTCATACTCCCTC 57.341 38.462 0.00 0.00 0.00 4.30
2248 2600 8.461033 AGTATCCTCTTATTTCATACTCCCTCT 58.539 37.037 0.00 0.00 0.00 3.69
2249 2601 6.985653 TCCTCTTATTTCATACTCCCTCTG 57.014 41.667 0.00 0.00 0.00 3.35
2250 2602 6.444704 TCCTCTTATTTCATACTCCCTCTGT 58.555 40.000 0.00 0.00 0.00 3.41
2251 2603 7.592736 TCCTCTTATTTCATACTCCCTCTGTA 58.407 38.462 0.00 0.00 0.00 2.74
2252 2604 7.726291 TCCTCTTATTTCATACTCCCTCTGTAG 59.274 40.741 0.00 0.00 0.00 2.74
2253 2605 7.291411 TCTTATTTCATACTCCCTCTGTAGC 57.709 40.000 0.00 0.00 0.00 3.58
2254 2606 7.069986 TCTTATTTCATACTCCCTCTGTAGCT 58.930 38.462 0.00 0.00 0.00 3.32
2255 2607 5.799827 ATTTCATACTCCCTCTGTAGCTC 57.200 43.478 0.00 0.00 0.00 4.09
2256 2608 3.953542 TCATACTCCCTCTGTAGCTCA 57.046 47.619 0.00 0.00 0.00 4.26
2257 2609 4.251103 TCATACTCCCTCTGTAGCTCAA 57.749 45.455 0.00 0.00 0.00 3.02
2258 2610 4.211125 TCATACTCCCTCTGTAGCTCAAG 58.789 47.826 0.00 0.00 0.00 3.02
2259 2611 2.909504 ACTCCCTCTGTAGCTCAAGA 57.090 50.000 0.00 0.00 0.00 3.02
2260 2612 2.452505 ACTCCCTCTGTAGCTCAAGAC 58.547 52.381 0.00 0.00 0.00 3.01
2261 2613 2.225142 ACTCCCTCTGTAGCTCAAGACA 60.225 50.000 0.00 0.00 0.00 3.41
2262 2614 2.165437 CTCCCTCTGTAGCTCAAGACAC 59.835 54.545 0.00 0.00 0.00 3.67
2263 2615 2.175202 CCCTCTGTAGCTCAAGACACT 58.825 52.381 0.00 0.00 0.00 3.55
2264 2616 2.564947 CCCTCTGTAGCTCAAGACACTT 59.435 50.000 0.00 0.00 0.00 3.16
2265 2617 3.764434 CCCTCTGTAGCTCAAGACACTTA 59.236 47.826 0.00 0.00 0.00 2.24
2266 2618 4.404073 CCCTCTGTAGCTCAAGACACTTAT 59.596 45.833 0.00 0.00 0.00 1.73
2267 2619 5.105146 CCCTCTGTAGCTCAAGACACTTATT 60.105 44.000 0.00 0.00 0.00 1.40
2268 2620 6.402222 CCTCTGTAGCTCAAGACACTTATTT 58.598 40.000 0.00 0.00 0.00 1.40
2269 2621 6.876257 CCTCTGTAGCTCAAGACACTTATTTT 59.124 38.462 0.00 0.00 0.00 1.82
2270 2622 7.148507 CCTCTGTAGCTCAAGACACTTATTTTG 60.149 40.741 0.00 0.00 0.00 2.44
2271 2623 6.650807 TCTGTAGCTCAAGACACTTATTTTGG 59.349 38.462 0.00 0.00 0.00 3.28
2272 2624 5.705441 TGTAGCTCAAGACACTTATTTTGGG 59.295 40.000 0.00 0.00 0.00 4.12
2273 2625 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
2274 2626 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
2275 2627 4.378459 GCTCAAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
2276 2628 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
2277 2629 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
2278 2630 4.360951 AGACACTTATTTTGGGACGGAA 57.639 40.909 0.00 0.00 0.00 4.30
2279 2631 4.324267 AGACACTTATTTTGGGACGGAAG 58.676 43.478 0.00 0.00 0.00 3.46
2280 2632 3.418047 ACACTTATTTTGGGACGGAAGG 58.582 45.455 0.00 0.00 0.00 3.46
2348 2700 8.785101 CGTTACAGTAAATTAATGACAACATGC 58.215 33.333 7.49 0.00 36.79 4.06
2364 2716 6.293698 ACAACATGCTTATATGCTCATCTCA 58.706 36.000 11.48 0.00 0.00 3.27
2383 2735 3.242867 TCATTTGACCAGAGGTGAGAGT 58.757 45.455 0.00 0.00 35.25 3.24
2392 2744 3.701542 CCAGAGGTGAGAGTACATGCTTA 59.298 47.826 0.00 0.00 0.00 3.09
2393 2745 4.343526 CCAGAGGTGAGAGTACATGCTTAT 59.656 45.833 0.00 0.00 0.00 1.73
2399 2751 7.796054 AGGTGAGAGTACATGCTTATGTTAAT 58.204 34.615 0.00 0.00 36.08 1.40
2491 2848 9.919416 TCTTCCTTGAAATCATGTATTGGATTA 57.081 29.630 0.00 0.00 33.57 1.75
2641 3001 4.080863 ACTTCTTGGACTGTTTCTGAGTGT 60.081 41.667 0.00 0.00 0.00 3.55
2643 3003 4.843728 TCTTGGACTGTTTCTGAGTGTTT 58.156 39.130 0.00 0.00 0.00 2.83
2662 3022 5.067805 GTGTTTCTTCTTGTGTCCCTCAATT 59.932 40.000 0.00 0.00 0.00 2.32
2663 3023 5.067674 TGTTTCTTCTTGTGTCCCTCAATTG 59.932 40.000 0.00 0.00 0.00 2.32
2664 3024 4.437682 TCTTCTTGTGTCCCTCAATTGT 57.562 40.909 5.13 0.00 0.00 2.71
2665 3025 4.389374 TCTTCTTGTGTCCCTCAATTGTC 58.611 43.478 5.13 0.00 0.00 3.18
2668 3028 3.136443 TCTTGTGTCCCTCAATTGTCAGT 59.864 43.478 5.13 0.00 0.00 3.41
2669 3029 4.346709 TCTTGTGTCCCTCAATTGTCAGTA 59.653 41.667 5.13 0.00 0.00 2.74
2670 3030 4.002906 TGTGTCCCTCAATTGTCAGTAC 57.997 45.455 5.13 0.23 0.00 2.73
2671 3031 3.389656 TGTGTCCCTCAATTGTCAGTACA 59.610 43.478 5.13 2.77 0.00 2.90
2702 3062 1.821216 TTGAACCGGATGCTCTTTCC 58.179 50.000 9.46 0.00 0.00 3.13
2728 3102 3.969117 TTGCTGTTGTCTGACATGTTC 57.031 42.857 11.86 3.97 0.00 3.18
2758 3132 3.316868 CCTAGAGGTCTCGTTGAGATTCC 59.683 52.174 0.00 0.00 40.98 3.01
2788 3167 3.172229 GTCAGGTGACTTAGCAGGATC 57.828 52.381 2.72 0.00 41.65 3.36
2789 3168 2.763448 GTCAGGTGACTTAGCAGGATCT 59.237 50.000 2.72 0.00 41.65 2.75
2790 3169 3.027412 TCAGGTGACTTAGCAGGATCTC 58.973 50.000 0.00 0.00 40.21 2.75
2792 3171 4.079730 TCAGGTGACTTAGCAGGATCTCTA 60.080 45.833 0.00 0.00 40.21 2.43
2793 3172 4.646945 CAGGTGACTTAGCAGGATCTCTAA 59.353 45.833 0.00 0.00 40.21 2.10
2810 3192 8.265764 GGATCTCTAACCCAACTTGTAGTAATT 58.734 37.037 0.00 0.00 0.00 1.40
2811 3193 9.315525 GATCTCTAACCCAACTTGTAGTAATTC 57.684 37.037 0.00 0.00 0.00 2.17
2817 3199 6.243148 ACCCAACTTGTAGTAATTCGGAAAT 58.757 36.000 0.00 0.00 0.00 2.17
2818 3200 6.150474 ACCCAACTTGTAGTAATTCGGAAATG 59.850 38.462 0.00 0.00 0.00 2.32
2819 3201 6.150474 CCCAACTTGTAGTAATTCGGAAATGT 59.850 38.462 0.00 0.00 0.00 2.71
2820 3202 7.334921 CCCAACTTGTAGTAATTCGGAAATGTA 59.665 37.037 0.00 0.00 0.00 2.29
2821 3203 8.173130 CCAACTTGTAGTAATTCGGAAATGTAC 58.827 37.037 0.00 0.00 0.00 2.90
2822 3204 8.714179 CAACTTGTAGTAATTCGGAAATGTACA 58.286 33.333 0.00 0.00 0.00 2.90
2877 3277 7.026631 TGAGAAATTTTCATCAACAAGACGT 57.973 32.000 11.53 0.00 0.00 4.34
2896 3296 0.035176 TTTGCTTCCCATTTGCAGGC 59.965 50.000 0.00 0.00 38.01 4.85
2959 3359 1.311651 CCGCAATGCATACCACACCA 61.312 55.000 5.91 0.00 0.00 4.17
3183 3584 3.713826 TGGTTCTGGAGGTTTATGGAC 57.286 47.619 0.00 0.00 0.00 4.02
3215 3622 0.323269 TTTCAGGGCGGATCATGCAA 60.323 50.000 10.82 0.00 0.00 4.08
3253 3660 4.907582 GTGCGGTGTTCTTGTTAACATTAC 59.092 41.667 9.56 8.46 41.18 1.89
3258 3688 5.912955 GGTGTTCTTGTTAACATTACAGTGC 59.087 40.000 9.56 3.27 41.18 4.40
3317 3747 5.103940 AGGTTATGTATGAGATTGCCTGGTT 60.104 40.000 0.00 0.00 0.00 3.67
3352 3826 5.649782 ATTCGGATTATTGCATTGGATCC 57.350 39.130 4.20 4.20 34.32 3.36
3353 3827 4.371624 TCGGATTATTGCATTGGATCCT 57.628 40.909 14.23 0.00 35.27 3.24
3354 3828 4.728772 TCGGATTATTGCATTGGATCCTT 58.271 39.130 14.23 0.00 35.27 3.36
3355 3829 5.139727 TCGGATTATTGCATTGGATCCTTT 58.860 37.500 14.23 0.00 35.27 3.11
3358 3832 8.106462 TCGGATTATTGCATTGGATCCTTTATA 58.894 33.333 14.23 0.05 35.27 0.98
3442 3918 8.219436 CATGTGCATGTTTGACTAAGTTTTAG 57.781 34.615 4.13 0.00 34.23 1.85
3487 3965 9.095065 ACACTACCAAATTCGTGTAATTAGATC 57.905 33.333 0.00 0.00 38.69 2.75
3611 4089 6.320418 TGGAAACTGATGCGTCTTATAGTCTA 59.680 38.462 7.58 0.00 0.00 2.59
3615 4093 6.961576 ACTGATGCGTCTTATAGTCTAGAAC 58.038 40.000 7.58 0.00 0.00 3.01
3632 4110 8.951541 AGTCTAGAACAGAGGGAGTATATACTT 58.048 37.037 16.46 1.01 32.97 2.24
3689 4354 9.474313 AGGTTCAAATATACCACATACACAAAT 57.526 29.630 0.00 0.00 36.87 2.32
3875 4543 7.224949 GGGTTTCAATGTAATTTTTCACGGAAA 59.775 33.333 0.00 0.00 31.22 3.13
3877 4545 9.579610 GTTTCAATGTAATTTTTCACGGAAATG 57.420 29.630 0.00 0.00 31.22 2.32
3881 4549 5.226396 TGTAATTTTTCACGGAAATGGCAG 58.774 37.500 0.00 0.00 31.34 4.85
3961 4632 2.029623 TGAGGAGCGGGAGTATGTTAC 58.970 52.381 0.00 0.00 0.00 2.50
4081 4754 9.092876 TGTGTCCATCTGTTTTGTTTAAATTTC 57.907 29.630 0.00 0.00 0.00 2.17
4106 4779 8.773645 TCATGCTATCGTTGAATGGTAAATAAG 58.226 33.333 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.238289 GATTGTTGGCACTGGACGTG 59.762 55.000 0.00 0.00 46.58 4.49
14 15 3.242837 CGATATGGTGATTGTTGGCACTG 60.243 47.826 0.00 0.00 35.43 3.66
31 32 1.819288 CACTATCCCTGGACGCGATAT 59.181 52.381 15.93 0.00 0.00 1.63
32 33 1.244816 CACTATCCCTGGACGCGATA 58.755 55.000 15.93 0.00 0.00 2.92
51 52 6.865205 CCAAACTTTGAGAAAGATGAATGGAC 59.135 38.462 2.87 0.00 41.02 4.02
65 74 7.814587 GGAGGTGAATTATTTCCAAACTTTGAG 59.185 37.037 2.87 0.00 0.00 3.02
75 84 5.117406 ACTGAGGGAGGTGAATTATTTCC 57.883 43.478 0.00 0.00 0.00 3.13
76 85 6.712547 CCATACTGAGGGAGGTGAATTATTTC 59.287 42.308 0.00 0.00 0.00 2.17
82 91 3.421394 TCCATACTGAGGGAGGTGAAT 57.579 47.619 0.00 0.00 30.19 2.57
142 151 3.048600 TCTCTAGGGGGACAATCCAATG 58.951 50.000 0.00 0.00 38.64 2.82
144 153 2.844348 GTTCTCTAGGGGGACAATCCAA 59.156 50.000 0.00 0.00 38.64 3.53
145 154 2.478292 GTTCTCTAGGGGGACAATCCA 58.522 52.381 0.00 0.00 38.64 3.41
156 165 0.658897 GAGACTCGCCGTTCTCTAGG 59.341 60.000 10.08 0.00 0.00 3.02
157 166 0.302288 CGAGACTCGCCGTTCTCTAG 59.698 60.000 12.67 0.00 31.14 2.43
167 176 1.263217 GAGGAAGAGATCGAGACTCGC 59.737 57.143 20.11 7.17 40.21 5.03
187 196 4.109050 GGAGAGAGCGAACAACATAGAAG 58.891 47.826 0.00 0.00 0.00 2.85
192 201 0.108615 CCGGAGAGAGCGAACAACAT 60.109 55.000 0.00 0.00 0.00 2.71
193 202 1.289066 CCGGAGAGAGCGAACAACA 59.711 57.895 0.00 0.00 0.00 3.33
209 218 1.198408 TCACACACGCTAGAACTACCG 59.802 52.381 0.00 0.00 0.00 4.02
213 222 3.057736 ACGTTATCACACACGCTAGAACT 60.058 43.478 0.00 0.00 40.16 3.01
225 234 7.095397 CCATTCACTTTAGAACACGTTATCACA 60.095 37.037 0.00 0.00 0.00 3.58
276 285 7.975616 TCTCCGTAGCGTATAAATTGTACTTTT 59.024 33.333 0.00 0.00 0.00 2.27
287 296 2.541346 CGTGTCTCTCCGTAGCGTATAA 59.459 50.000 0.00 0.00 0.00 0.98
292 301 1.060622 GTCGTGTCTCTCCGTAGCG 59.939 63.158 0.00 0.00 0.00 4.26
296 305 0.672711 TGATCGTCGTGTCTCTCCGT 60.673 55.000 0.00 0.00 0.00 4.69
299 308 2.161808 TCCTTTGATCGTCGTGTCTCTC 59.838 50.000 0.00 0.00 0.00 3.20
316 325 1.340399 TGGAGCCGATGCATCTCCTT 61.340 55.000 25.58 10.97 45.04 3.36
326 335 0.471617 CATCTTTCCCTGGAGCCGAT 59.528 55.000 0.00 0.00 0.00 4.18
331 340 1.767681 CTCTCCCATCTTTCCCTGGAG 59.232 57.143 0.00 0.00 43.21 3.86
340 349 2.427245 CCGACGCCTCTCCCATCTT 61.427 63.158 0.00 0.00 0.00 2.40
366 375 3.366739 AAACCGTCGAGCGATCCCC 62.367 63.158 8.63 0.00 44.77 4.81
369 378 2.165301 CCCAAACCGTCGAGCGATC 61.165 63.158 8.63 0.00 44.77 3.69
380 389 2.828661 AATCTTCCCTAGCCCAAACC 57.171 50.000 0.00 0.00 0.00 3.27
394 403 8.225416 GGGAGTATGTAAATAGGGGAAAATCTT 58.775 37.037 0.00 0.00 0.00 2.40
399 408 5.609708 GGAGGGAGTATGTAAATAGGGGAAA 59.390 44.000 0.00 0.00 0.00 3.13
408 417 2.767960 GGGAACGGAGGGAGTATGTAAA 59.232 50.000 0.00 0.00 0.00 2.01
418 451 4.102681 AGACTTATATTTGGGAACGGAGGG 59.897 45.833 0.00 0.00 0.00 4.30
420 453 7.625828 AAAAGACTTATATTTGGGAACGGAG 57.374 36.000 0.00 0.00 0.00 4.63
422 455 9.169592 TCTAAAAAGACTTATATTTGGGAACGG 57.830 33.333 0.00 0.00 0.00 4.44
449 648 3.896648 ACGTGGTCACTTGCTAAAATG 57.103 42.857 0.00 0.00 0.00 2.32
453 652 1.336148 CCGTACGTGGTCACTTGCTAA 60.336 52.381 15.21 0.00 0.00 3.09
454 653 0.241749 CCGTACGTGGTCACTTGCTA 59.758 55.000 15.21 0.00 0.00 3.49
456 655 1.007038 TCCGTACGTGGTCACTTGC 60.007 57.895 15.21 0.00 0.00 4.01
457 656 0.313043 ACTCCGTACGTGGTCACTTG 59.687 55.000 15.21 0.00 0.00 3.16
459 658 1.896220 TTACTCCGTACGTGGTCACT 58.104 50.000 15.21 0.00 0.00 3.41
461 660 3.255395 TCATTTTACTCCGTACGTGGTCA 59.745 43.478 15.21 1.29 0.00 4.02
462 661 3.836949 TCATTTTACTCCGTACGTGGTC 58.163 45.455 15.21 0.00 0.00 4.02
463 662 3.256631 ACTCATTTTACTCCGTACGTGGT 59.743 43.478 15.21 14.10 0.00 4.16
464 663 3.611113 CACTCATTTTACTCCGTACGTGG 59.389 47.826 15.21 8.74 0.00 4.94
465 664 4.478699 TCACTCATTTTACTCCGTACGTG 58.521 43.478 15.21 9.15 0.00 4.49
466 665 4.771590 TCACTCATTTTACTCCGTACGT 57.228 40.909 15.21 0.00 0.00 3.57
467 666 6.034591 AGATTCACTCATTTTACTCCGTACG 58.965 40.000 8.69 8.69 0.00 3.67
468 667 7.972277 TGTAGATTCACTCATTTTACTCCGTAC 59.028 37.037 0.00 0.00 0.00 3.67
469 668 7.972277 GTGTAGATTCACTCATTTTACTCCGTA 59.028 37.037 0.00 0.00 35.68 4.02
470 669 6.812160 GTGTAGATTCACTCATTTTACTCCGT 59.188 38.462 0.00 0.00 35.68 4.69
471 670 7.036220 AGTGTAGATTCACTCATTTTACTCCG 58.964 38.462 0.00 0.00 44.07 4.63
508 707 5.822278 ACTACAAGATACAGATGCGTGTAG 58.178 41.667 0.00 0.00 44.53 2.74
511 710 4.045104 GGACTACAAGATACAGATGCGTG 58.955 47.826 0.00 0.00 0.00 5.34
513 712 4.307443 TGGACTACAAGATACAGATGCG 57.693 45.455 0.00 0.00 0.00 4.73
514 713 6.763135 TCAAATGGACTACAAGATACAGATGC 59.237 38.462 0.00 0.00 0.00 3.91
518 717 8.950210 ACATTTCAAATGGACTACAAGATACAG 58.050 33.333 14.70 0.00 0.00 2.74
519 718 8.862325 ACATTTCAAATGGACTACAAGATACA 57.138 30.769 14.70 0.00 0.00 2.29
529 728 9.965902 AGTCTTCTTATACATTTCAAATGGACT 57.034 29.630 14.70 10.82 0.00 3.85
548 747 7.366011 CCCTCCATTCCTAAATGTTAGTCTTCT 60.366 40.741 0.00 0.00 40.63 2.85
549 748 6.768381 CCCTCCATTCCTAAATGTTAGTCTTC 59.232 42.308 0.00 0.00 40.63 2.87
556 755 6.848562 ATACTCCCTCCATTCCTAAATGTT 57.151 37.500 0.00 0.00 40.63 2.71
558 757 8.386264 ACAATATACTCCCTCCATTCCTAAATG 58.614 37.037 0.00 0.00 41.69 2.32
586 785 9.322769 ACGGAGGGAGTATATGTTAAGATTAAT 57.677 33.333 0.00 0.00 0.00 1.40
587 786 8.716674 ACGGAGGGAGTATATGTTAAGATTAA 57.283 34.615 0.00 0.00 0.00 1.40
588 787 7.395489 GGACGGAGGGAGTATATGTTAAGATTA 59.605 40.741 0.00 0.00 0.00 1.75
589 788 6.210984 GGACGGAGGGAGTATATGTTAAGATT 59.789 42.308 0.00 0.00 0.00 2.40
590 789 5.715753 GGACGGAGGGAGTATATGTTAAGAT 59.284 44.000 0.00 0.00 0.00 2.40
591 790 5.075493 GGACGGAGGGAGTATATGTTAAGA 58.925 45.833 0.00 0.00 0.00 2.10
592 791 4.220163 GGGACGGAGGGAGTATATGTTAAG 59.780 50.000 0.00 0.00 0.00 1.85
593 792 4.154942 GGGACGGAGGGAGTATATGTTAA 58.845 47.826 0.00 0.00 0.00 2.01
594 793 3.140707 TGGGACGGAGGGAGTATATGTTA 59.859 47.826 0.00 0.00 0.00 2.41
595 794 2.090943 TGGGACGGAGGGAGTATATGTT 60.091 50.000 0.00 0.00 0.00 2.71
596 795 1.502039 TGGGACGGAGGGAGTATATGT 59.498 52.381 0.00 0.00 0.00 2.29
597 796 2.304221 TGGGACGGAGGGAGTATATG 57.696 55.000 0.00 0.00 0.00 1.78
598 797 3.339713 TTTGGGACGGAGGGAGTATAT 57.660 47.619 0.00 0.00 0.00 0.86
599 798 2.852714 TTTGGGACGGAGGGAGTATA 57.147 50.000 0.00 0.00 0.00 1.47
600 799 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
601 800 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
602 801 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
603 802 3.359695 TTTATTTTGGGACGGAGGGAG 57.640 47.619 0.00 0.00 0.00 4.30
604 803 3.010808 ACATTTATTTTGGGACGGAGGGA 59.989 43.478 0.00 0.00 0.00 4.20
605 804 3.361786 ACATTTATTTTGGGACGGAGGG 58.638 45.455 0.00 0.00 0.00 4.30
606 805 4.270008 AGACATTTATTTTGGGACGGAGG 58.730 43.478 0.00 0.00 0.00 4.30
607 806 5.897377 AAGACATTTATTTTGGGACGGAG 57.103 39.130 0.00 0.00 0.00 4.63
608 807 6.127842 GCTTAAGACATTTATTTTGGGACGGA 60.128 38.462 6.67 0.00 0.00 4.69
609 808 6.033966 GCTTAAGACATTTATTTTGGGACGG 58.966 40.000 6.67 0.00 0.00 4.79
610 809 6.852664 AGCTTAAGACATTTATTTTGGGACG 58.147 36.000 6.67 0.00 0.00 4.79
611 810 9.788960 CTAAGCTTAAGACATTTATTTTGGGAC 57.211 33.333 6.67 0.00 0.00 4.46
612 811 9.528489 ACTAAGCTTAAGACATTTATTTTGGGA 57.472 29.630 6.67 0.00 0.00 4.37
613 812 9.573133 CACTAAGCTTAAGACATTTATTTTGGG 57.427 33.333 6.67 0.00 0.00 4.12
622 821 9.555727 TCAACTTTACACTAAGCTTAAGACATT 57.444 29.630 6.67 0.01 0.00 2.71
623 822 9.209175 CTCAACTTTACACTAAGCTTAAGACAT 57.791 33.333 6.67 0.00 0.00 3.06
624 823 8.418662 TCTCAACTTTACACTAAGCTTAAGACA 58.581 33.333 6.67 0.00 0.00 3.41
625 824 8.701540 GTCTCAACTTTACACTAAGCTTAAGAC 58.298 37.037 6.67 8.83 0.00 3.01
626 825 8.418662 TGTCTCAACTTTACACTAAGCTTAAGA 58.581 33.333 6.67 0.09 0.00 2.10
627 826 8.488764 GTGTCTCAACTTTACACTAAGCTTAAG 58.511 37.037 7.74 5.29 40.25 1.85
628 827 8.361592 GTGTCTCAACTTTACACTAAGCTTAA 57.638 34.615 7.74 0.00 40.25 1.85
629 828 7.941795 GTGTCTCAACTTTACACTAAGCTTA 57.058 36.000 5.94 5.94 40.25 3.09
630 829 6.846325 GTGTCTCAACTTTACACTAAGCTT 57.154 37.500 3.48 3.48 40.25 3.74
637 836 8.617809 TCCAAAATAAGTGTCTCAACTTTACAC 58.382 33.333 0.00 0.00 43.02 2.90
638 837 8.740123 TCCAAAATAAGTGTCTCAACTTTACA 57.260 30.769 0.00 0.00 40.77 2.41
639 838 9.665264 CTTCCAAAATAAGTGTCTCAACTTTAC 57.335 33.333 0.00 0.00 40.77 2.01
640 839 8.846211 CCTTCCAAAATAAGTGTCTCAACTTTA 58.154 33.333 0.00 0.00 40.77 1.85
641 840 7.559897 TCCTTCCAAAATAAGTGTCTCAACTTT 59.440 33.333 0.00 0.00 40.77 2.66
642 841 7.060421 TCCTTCCAAAATAAGTGTCTCAACTT 58.940 34.615 0.00 0.00 42.89 2.66
643 842 6.601332 TCCTTCCAAAATAAGTGTCTCAACT 58.399 36.000 0.00 0.00 0.00 3.16
644 843 6.877611 TCCTTCCAAAATAAGTGTCTCAAC 57.122 37.500 0.00 0.00 0.00 3.18
645 844 6.490040 CCTTCCTTCCAAAATAAGTGTCTCAA 59.510 38.462 0.00 0.00 0.00 3.02
646 845 6.003950 CCTTCCTTCCAAAATAAGTGTCTCA 58.996 40.000 0.00 0.00 0.00 3.27
647 846 6.238648 TCCTTCCTTCCAAAATAAGTGTCTC 58.761 40.000 0.00 0.00 0.00 3.36
648 847 6.200878 TCCTTCCTTCCAAAATAAGTGTCT 57.799 37.500 0.00 0.00 0.00 3.41
649 848 8.753497 ATATCCTTCCTTCCAAAATAAGTGTC 57.247 34.615 0.00 0.00 0.00 3.67
650 849 7.499232 CGATATCCTTCCTTCCAAAATAAGTGT 59.501 37.037 0.00 0.00 0.00 3.55
651 850 7.715249 TCGATATCCTTCCTTCCAAAATAAGTG 59.285 37.037 0.00 0.00 0.00 3.16
652 851 7.715686 GTCGATATCCTTCCTTCCAAAATAAGT 59.284 37.037 0.00 0.00 0.00 2.24
653 852 7.934120 AGTCGATATCCTTCCTTCCAAAATAAG 59.066 37.037 0.00 0.00 0.00 1.73
654 853 7.802117 AGTCGATATCCTTCCTTCCAAAATAA 58.198 34.615 0.00 0.00 0.00 1.40
655 854 7.070696 TGAGTCGATATCCTTCCTTCCAAAATA 59.929 37.037 0.00 0.00 0.00 1.40
656 855 6.126768 TGAGTCGATATCCTTCCTTCCAAAAT 60.127 38.462 0.00 0.00 0.00 1.82
657 856 5.188948 TGAGTCGATATCCTTCCTTCCAAAA 59.811 40.000 0.00 0.00 0.00 2.44
658 857 4.714802 TGAGTCGATATCCTTCCTTCCAAA 59.285 41.667 0.00 0.00 0.00 3.28
659 858 4.286707 TGAGTCGATATCCTTCCTTCCAA 58.713 43.478 0.00 0.00 0.00 3.53
660 859 3.910989 TGAGTCGATATCCTTCCTTCCA 58.089 45.455 0.00 0.00 0.00 3.53
661 860 5.245075 AGAATGAGTCGATATCCTTCCTTCC 59.755 44.000 12.04 0.00 0.00 3.46
662 861 6.155827 CAGAATGAGTCGATATCCTTCCTTC 58.844 44.000 12.04 2.37 39.69 3.46
663 862 5.600484 ACAGAATGAGTCGATATCCTTCCTT 59.400 40.000 12.04 0.00 39.69 3.36
664 863 5.144100 ACAGAATGAGTCGATATCCTTCCT 58.856 41.667 12.04 0.00 39.69 3.36
665 864 5.461032 ACAGAATGAGTCGATATCCTTCC 57.539 43.478 12.04 0.00 39.69 3.46
666 865 5.694006 CCAACAGAATGAGTCGATATCCTTC 59.306 44.000 0.00 9.24 39.69 3.46
667 866 5.129485 ACCAACAGAATGAGTCGATATCCTT 59.871 40.000 0.00 0.00 39.69 3.36
668 867 4.651503 ACCAACAGAATGAGTCGATATCCT 59.348 41.667 0.00 0.00 39.69 3.24
669 868 4.950050 ACCAACAGAATGAGTCGATATCC 58.050 43.478 0.00 0.00 39.69 2.59
942 1187 2.987547 TTGCTTGCTCTGCTGGGC 60.988 61.111 8.78 8.78 0.00 5.36
962 1207 2.959030 CTCTCTCTCTCTCTCTCTCCGA 59.041 54.545 0.00 0.00 0.00 4.55
964 1209 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
965 1210 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
966 1211 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
968 1213 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
969 1214 3.323403 CCCTCTCTCTCTCTCTCTCTCTC 59.677 56.522 0.00 0.00 0.00 3.20
970 1215 3.312890 CCCTCTCTCTCTCTCTCTCTCT 58.687 54.545 0.00 0.00 0.00 3.10
971 1216 2.224402 GCCCTCTCTCTCTCTCTCTCTC 60.224 59.091 0.00 0.00 0.00 3.20
972 1217 1.771255 GCCCTCTCTCTCTCTCTCTCT 59.229 57.143 0.00 0.00 0.00 3.10
973 1218 1.490490 TGCCCTCTCTCTCTCTCTCTC 59.510 57.143 0.00 0.00 0.00 3.20
974 1219 1.595311 TGCCCTCTCTCTCTCTCTCT 58.405 55.000 0.00 0.00 0.00 3.10
975 1220 2.435372 TTGCCCTCTCTCTCTCTCTC 57.565 55.000 0.00 0.00 0.00 3.20
976 1221 2.669781 CATTGCCCTCTCTCTCTCTCT 58.330 52.381 0.00 0.00 0.00 3.10
977 1222 1.688197 CCATTGCCCTCTCTCTCTCTC 59.312 57.143 0.00 0.00 0.00 3.20
978 1223 1.792115 CCATTGCCCTCTCTCTCTCT 58.208 55.000 0.00 0.00 0.00 3.10
985 1230 2.024590 GCCATTGCCATTGCCCTCTC 62.025 60.000 0.00 0.00 36.33 3.20
1117 1362 1.299773 CGAGATCAGGCGAGCTTCC 60.300 63.158 0.00 0.00 38.23 3.46
1123 1368 2.184830 CGGTACCGAGATCAGGCGA 61.185 63.158 30.64 0.00 42.83 5.54
1136 1381 0.459759 GTTAGTCAGCAGGGCGGTAC 60.460 60.000 0.00 0.00 0.00 3.34
1137 1382 0.613853 AGTTAGTCAGCAGGGCGGTA 60.614 55.000 0.00 0.00 0.00 4.02
1262 1519 4.154347 GCAGCGGTGAGGAGGAGG 62.154 72.222 20.69 0.00 0.00 4.30
1277 1534 4.050934 ATGACGACGACCTGCGCA 62.051 61.111 10.98 10.98 46.04 6.09
1285 1542 3.683587 CTGGCGAGCATGACGACGA 62.684 63.158 14.93 4.45 42.10 4.20
1408 1669 3.259064 GAGCAACGAGGCACATAACTTA 58.741 45.455 5.91 0.00 35.83 2.24
1450 1711 2.531522 AACTTCAATGCTTGTTGGCC 57.468 45.000 0.00 0.00 0.00 5.36
1503 1764 1.860676 CGGAAAACTGAACTGACGGA 58.139 50.000 0.00 0.00 0.00 4.69
1526 1787 6.260377 TCTAATGAATTTCGAATTGCTGCAG 58.740 36.000 10.11 10.11 0.00 4.41
1528 1789 7.137426 AGATCTAATGAATTTCGAATTGCTGC 58.863 34.615 0.00 0.00 0.00 5.25
1537 1798 6.146837 CACAGGGCTAGATCTAATGAATTTCG 59.853 42.308 3.57 0.00 0.00 3.46
1544 1805 3.900601 AGACCACAGGGCTAGATCTAATG 59.099 47.826 3.57 3.57 40.73 1.90
1594 1855 7.556275 ACTCTAGATCTGAAGTGAGGTCTAAAG 59.444 40.741 5.18 0.00 35.65 1.85
1617 1878 1.056660 TCTGAACCCCAACCTCACTC 58.943 55.000 0.00 0.00 0.00 3.51
1640 1907 2.884012 ACACACACACAGAGAGAGAGAG 59.116 50.000 0.00 0.00 0.00 3.20
1642 1909 2.350293 CGACACACACACAGAGAGAGAG 60.350 54.545 0.00 0.00 0.00 3.20
1644 1911 1.604278 TCGACACACACACAGAGAGAG 59.396 52.381 0.00 0.00 0.00 3.20
1646 1913 2.713895 ATCGACACACACACAGAGAG 57.286 50.000 0.00 0.00 0.00 3.20
1727 1994 5.814705 GGCACTCGACTCTAGTAAAGTAGTA 59.185 44.000 0.00 0.00 0.00 1.82
1728 1995 4.635324 GGCACTCGACTCTAGTAAAGTAGT 59.365 45.833 0.00 0.00 0.00 2.73
1729 1996 4.877251 AGGCACTCGACTCTAGTAAAGTAG 59.123 45.833 0.00 0.00 0.00 2.57
1854 2137 1.972872 AGCACAAACAGAGAACCCTG 58.027 50.000 0.00 0.00 39.93 4.45
1885 2168 5.063204 CCATAACAGACCTGTCAACAAGAA 58.937 41.667 2.84 0.00 44.13 2.52
1886 2169 4.346709 TCCATAACAGACCTGTCAACAAGA 59.653 41.667 2.84 0.00 44.13 3.02
1887 2170 4.641396 TCCATAACAGACCTGTCAACAAG 58.359 43.478 2.84 0.00 44.13 3.16
1898 2181 5.587844 ACAATTCTGCATCTCCATAACAGAC 59.412 40.000 0.00 0.00 37.12 3.51
1923 2206 2.043227 AGATCTAAGGTACCTGCCTGC 58.957 52.381 17.14 5.71 39.17 4.85
1924 2207 3.034635 ACAGATCTAAGGTACCTGCCTG 58.965 50.000 17.14 18.55 39.17 4.85
1925 2208 3.406512 ACAGATCTAAGGTACCTGCCT 57.593 47.619 17.14 1.84 41.41 4.75
1926 2209 5.810080 ATAACAGATCTAAGGTACCTGCC 57.190 43.478 17.14 3.25 0.00 4.85
1960 2243 8.430063 CAAAATTTGGTTCAATCAAGAGATTCG 58.570 33.333 0.00 0.00 42.46 3.34
1992 2277 9.352191 ACTCCTACTATAATACAGTACCAGTTG 57.648 37.037 0.00 0.00 0.00 3.16
2041 2334 4.145052 GGAGTGTGGAGAAAAAGGAACAT 58.855 43.478 0.00 0.00 0.00 2.71
2057 2350 1.004440 GCTCAAGGCTTCGGAGTGT 60.004 57.895 14.04 0.00 38.06 3.55
2096 2389 1.637553 ACAAGAAGGCCATGTGGAGAT 59.362 47.619 5.01 0.00 37.39 2.75
2097 2390 1.003580 GACAAGAAGGCCATGTGGAGA 59.996 52.381 5.01 0.00 37.39 3.71
2098 2391 1.457346 GACAAGAAGGCCATGTGGAG 58.543 55.000 5.01 0.00 37.39 3.86
2099 2392 3.650647 GACAAGAAGGCCATGTGGA 57.349 52.632 5.01 0.00 37.39 4.02
2107 2400 0.915364 ATGGAGGAGGACAAGAAGGC 59.085 55.000 0.00 0.00 0.00 4.35
2108 2401 4.202409 GGATTATGGAGGAGGACAAGAAGG 60.202 50.000 0.00 0.00 0.00 3.46
2109 2402 4.202409 GGGATTATGGAGGAGGACAAGAAG 60.202 50.000 0.00 0.00 0.00 2.85
2110 2403 3.716872 GGGATTATGGAGGAGGACAAGAA 59.283 47.826 0.00 0.00 0.00 2.52
2111 2404 3.318313 GGGATTATGGAGGAGGACAAGA 58.682 50.000 0.00 0.00 0.00 3.02
2112 2405 2.373502 GGGGATTATGGAGGAGGACAAG 59.626 54.545 0.00 0.00 0.00 3.16
2113 2406 2.294195 TGGGGATTATGGAGGAGGACAA 60.294 50.000 0.00 0.00 0.00 3.18
2114 2407 1.296832 TGGGGATTATGGAGGAGGACA 59.703 52.381 0.00 0.00 0.00 4.02
2115 2408 2.118403 TGGGGATTATGGAGGAGGAC 57.882 55.000 0.00 0.00 0.00 3.85
2116 2409 2.460293 AGATGGGGATTATGGAGGAGGA 59.540 50.000 0.00 0.00 0.00 3.71
2117 2410 2.843113 GAGATGGGGATTATGGAGGAGG 59.157 54.545 0.00 0.00 0.00 4.30
2118 2411 2.843113 GGAGATGGGGATTATGGAGGAG 59.157 54.545 0.00 0.00 0.00 3.69
2131 2424 3.939740 TCAATTCAAGGAGGAGATGGG 57.060 47.619 0.00 0.00 0.00 4.00
2245 2597 7.148507 CCAAAATAAGTGTCTTGAGCTACAGAG 60.149 40.741 0.00 0.00 0.00 3.35
2246 2598 6.650807 CCAAAATAAGTGTCTTGAGCTACAGA 59.349 38.462 0.00 0.00 0.00 3.41
2247 2599 6.128172 CCCAAAATAAGTGTCTTGAGCTACAG 60.128 42.308 0.00 0.00 0.00 2.74
2248 2600 5.705441 CCCAAAATAAGTGTCTTGAGCTACA 59.295 40.000 0.00 0.00 0.00 2.74
2249 2601 5.938125 TCCCAAAATAAGTGTCTTGAGCTAC 59.062 40.000 0.00 0.00 0.00 3.58
2250 2602 5.938125 GTCCCAAAATAAGTGTCTTGAGCTA 59.062 40.000 0.00 0.00 0.00 3.32
2251 2603 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
2252 2604 4.378459 CGTCCCAAAATAAGTGTCTTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
2253 2605 4.154195 CCGTCCCAAAATAAGTGTCTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
2254 2606 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
2255 2607 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
2256 2608 4.360951 TCCGTCCCAAAATAAGTGTCTT 57.639 40.909 0.00 0.00 0.00 3.01
2257 2609 4.324267 CTTCCGTCCCAAAATAAGTGTCT 58.676 43.478 0.00 0.00 0.00 3.41
2258 2610 3.439129 CCTTCCGTCCCAAAATAAGTGTC 59.561 47.826 0.00 0.00 0.00 3.67
2259 2611 3.073356 TCCTTCCGTCCCAAAATAAGTGT 59.927 43.478 0.00 0.00 0.00 3.55
2260 2612 3.681593 TCCTTCCGTCCCAAAATAAGTG 58.318 45.455 0.00 0.00 0.00 3.16
2261 2613 3.329814 ACTCCTTCCGTCCCAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
2262 2614 3.951663 ACTCCTTCCGTCCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
2263 2615 4.323715 GGTACTCCTTCCGTCCCAAAATAA 60.324 45.833 0.00 0.00 0.00 1.40
2264 2616 3.198417 GGTACTCCTTCCGTCCCAAAATA 59.802 47.826 0.00 0.00 0.00 1.40
2265 2617 2.026542 GGTACTCCTTCCGTCCCAAAAT 60.027 50.000 0.00 0.00 0.00 1.82
2266 2618 1.348696 GGTACTCCTTCCGTCCCAAAA 59.651 52.381 0.00 0.00 0.00 2.44
2267 2619 0.978907 GGTACTCCTTCCGTCCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
2268 2620 0.115745 AGGTACTCCTTCCGTCCCAA 59.884 55.000 0.00 0.00 42.12 4.12
2269 2621 0.613853 CAGGTACTCCTTCCGTCCCA 60.614 60.000 0.00 0.00 43.07 4.37
2270 2622 0.614134 ACAGGTACTCCTTCCGTCCC 60.614 60.000 0.00 0.00 43.07 4.46
2271 2623 0.531200 CACAGGTACTCCTTCCGTCC 59.469 60.000 0.00 0.00 43.07 4.79
2272 2624 1.254954 ACACAGGTACTCCTTCCGTC 58.745 55.000 0.00 0.00 43.07 4.79
2273 2625 2.444421 CTACACAGGTACTCCTTCCGT 58.556 52.381 0.00 0.00 43.07 4.69
2274 2626 1.134560 GCTACACAGGTACTCCTTCCG 59.865 57.143 0.00 0.00 43.07 4.30
2275 2627 2.166664 CAGCTACACAGGTACTCCTTCC 59.833 54.545 0.00 0.00 43.07 3.46
2276 2628 2.826725 ACAGCTACACAGGTACTCCTTC 59.173 50.000 0.00 0.00 43.07 3.46
2277 2629 2.563179 CACAGCTACACAGGTACTCCTT 59.437 50.000 0.00 0.00 43.07 3.36
2278 2630 2.171840 CACAGCTACACAGGTACTCCT 58.828 52.381 0.00 0.00 46.37 3.69
2279 2631 1.404315 GCACAGCTACACAGGTACTCC 60.404 57.143 0.00 0.00 34.60 3.85
2280 2632 1.546476 AGCACAGCTACACAGGTACTC 59.454 52.381 0.00 0.00 36.99 2.59
2348 2700 7.974482 TGGTCAAATGAGATGAGCATATAAG 57.026 36.000 4.47 0.00 46.84 1.73
2364 2716 4.160329 TGTACTCTCACCTCTGGTCAAAT 58.840 43.478 0.00 0.00 31.02 2.32
2441 2794 5.179368 ACCAGATAAACAATTCAGTCACACG 59.821 40.000 0.00 0.00 0.00 4.49
2491 2848 8.467598 TGACGCTGACTTTAGAACTATTTAGAT 58.532 33.333 0.00 0.00 0.00 1.98
2498 2855 8.869897 CATTTATTGACGCTGACTTTAGAACTA 58.130 33.333 0.00 0.00 0.00 2.24
2505 2862 3.758554 AGCCATTTATTGACGCTGACTTT 59.241 39.130 0.00 0.00 0.00 2.66
2641 3001 5.200483 ACAATTGAGGGACACAAGAAGAAA 58.800 37.500 13.59 0.00 42.96 2.52
2643 3003 4.141505 TGACAATTGAGGGACACAAGAAGA 60.142 41.667 13.59 0.00 42.96 2.87
2668 3028 9.051679 CATCCGGTTCAATTTTCAGTATATGTA 57.948 33.333 0.00 0.00 0.00 2.29
2669 3029 7.468631 GCATCCGGTTCAATTTTCAGTATATGT 60.469 37.037 0.00 0.00 0.00 2.29
2670 3030 6.857964 GCATCCGGTTCAATTTTCAGTATATG 59.142 38.462 0.00 0.00 0.00 1.78
2671 3031 6.772716 AGCATCCGGTTCAATTTTCAGTATAT 59.227 34.615 0.00 0.00 0.00 0.86
2682 3042 2.369394 GGAAAGAGCATCCGGTTCAAT 58.631 47.619 0.00 0.00 33.66 2.57
2689 3049 2.880890 CAATAAGGGGAAAGAGCATCCG 59.119 50.000 0.00 0.00 37.87 4.18
2702 3062 3.411446 TGTCAGACAACAGCAATAAGGG 58.589 45.455 0.00 0.00 0.00 3.95
2745 3119 4.720649 TGAGTTAGGGAATCTCAACGAG 57.279 45.455 0.00 0.00 35.65 4.18
2785 3164 9.315525 GAATTACTACAAGTTGGGTTAGAGATC 57.684 37.037 7.96 0.00 0.00 2.75
2786 3165 7.980099 CGAATTACTACAAGTTGGGTTAGAGAT 59.020 37.037 7.96 0.00 0.00 2.75
2787 3166 7.318141 CGAATTACTACAAGTTGGGTTAGAGA 58.682 38.462 7.96 0.00 0.00 3.10
2788 3167 6.534079 CCGAATTACTACAAGTTGGGTTAGAG 59.466 42.308 7.96 0.00 0.00 2.43
2789 3168 6.211184 TCCGAATTACTACAAGTTGGGTTAGA 59.789 38.462 7.96 0.00 0.00 2.10
2790 3169 6.400568 TCCGAATTACTACAAGTTGGGTTAG 58.599 40.000 7.96 2.81 0.00 2.34
2792 3171 5.231702 TCCGAATTACTACAAGTTGGGTT 57.768 39.130 7.96 0.00 0.00 4.11
2793 3172 4.895668 TCCGAATTACTACAAGTTGGGT 57.104 40.909 7.96 8.23 0.00 4.51
2810 3192 7.988028 TGGTTGATACATTATGTACATTTCCGA 59.012 33.333 14.77 0.00 35.42 4.55
2811 3193 8.148807 TGGTTGATACATTATGTACATTTCCG 57.851 34.615 14.77 3.38 35.42 4.30
2817 3199 9.679661 AATGACTTGGTTGATACATTATGTACA 57.320 29.630 7.26 0.00 35.42 2.90
2818 3200 9.935682 CAATGACTTGGTTGATACATTATGTAC 57.064 33.333 7.26 3.12 35.42 2.90
2819 3201 8.620416 GCAATGACTTGGTTGATACATTATGTA 58.380 33.333 7.56 7.56 33.55 2.29
2820 3202 7.122501 TGCAATGACTTGGTTGATACATTATGT 59.877 33.333 2.58 2.58 32.72 2.29
2821 3203 7.482474 TGCAATGACTTGGTTGATACATTATG 58.518 34.615 0.00 0.00 32.72 1.90
2822 3204 7.643569 TGCAATGACTTGGTTGATACATTAT 57.356 32.000 0.00 0.00 32.72 1.28
2877 3277 0.035176 GCCTGCAAATGGGAAGCAAA 59.965 50.000 0.00 0.00 37.89 3.68
2896 3296 1.153939 CTGCGACGAGGAAGGTCAG 60.154 63.158 0.00 0.00 34.04 3.51
2943 3343 1.838112 ACCTGGTGTGGTATGCATTG 58.162 50.000 3.54 0.00 38.79 2.82
2959 3359 2.197465 GTTGAAGATCCCCCTGTACCT 58.803 52.381 0.00 0.00 0.00 3.08
3183 3584 1.512926 CCTGAAACGGACTGAACCTG 58.487 55.000 0.00 0.00 0.00 4.00
3215 3622 1.671850 CCGCACTCCACGAACTACATT 60.672 52.381 0.00 0.00 0.00 2.71
3253 3660 5.588240 TCATTTACACCGTATCTAGCACTG 58.412 41.667 0.00 0.00 0.00 3.66
3258 3688 6.757010 AGCAAACTCATTTACACCGTATCTAG 59.243 38.462 0.00 0.00 0.00 2.43
3317 3747 0.693622 TCCGAATTGTGTAAGGCCCA 59.306 50.000 0.00 0.00 0.00 5.36
3322 3752 7.167968 CCAATGCAATAATCCGAATTGTGTAAG 59.832 37.037 0.00 0.00 36.82 2.34
3325 3755 5.126869 TCCAATGCAATAATCCGAATTGTGT 59.873 36.000 0.00 0.00 36.82 3.72
3326 3756 5.590145 TCCAATGCAATAATCCGAATTGTG 58.410 37.500 0.00 0.00 36.82 3.33
3402 3878 6.773080 CATGCACATGTTTGACTTTTGAAAA 58.227 32.000 0.00 0.00 34.23 2.29
3404 3880 5.970140 CATGCACATGTTTGACTTTTGAA 57.030 34.783 0.00 0.00 34.23 2.69
3464 3942 8.657074 TGGATCTAATTACACGAATTTGGTAG 57.343 34.615 0.00 0.00 38.70 3.18
3465 3943 9.268268 GATGGATCTAATTACACGAATTTGGTA 57.732 33.333 0.00 0.00 38.70 3.25
3474 3952 9.751542 ACTTTTCTAGATGGATCTAATTACACG 57.248 33.333 0.00 0.00 38.80 4.49
3584 4062 2.254546 AAGACGCATCAGTTTCCACA 57.745 45.000 0.00 0.00 0.00 4.17
3664 4329 9.515020 CATTTGTGTATGTGGTATATTTGAACC 57.485 33.333 0.00 0.00 36.24 3.62
3741 4406 6.449635 TTTGTGTGAAACTTGTATTGAGCT 57.550 33.333 0.00 0.00 38.04 4.09
3845 4513 7.359933 CGTGAAAAATTACATTGAAACCCCATG 60.360 37.037 0.00 0.00 0.00 3.66
3846 4514 6.648725 CGTGAAAAATTACATTGAAACCCCAT 59.351 34.615 0.00 0.00 0.00 4.00
3853 4521 7.095439 GCCATTTCCGTGAAAAATTACATTGAA 60.095 33.333 3.67 0.00 35.11 2.69
3922 4593 7.379059 TCCTCATGTACCACATAGATGATTT 57.621 36.000 0.00 0.00 41.44 2.17
3923 4594 6.519721 GCTCCTCATGTACCACATAGATGATT 60.520 42.308 0.00 0.00 41.44 2.57
3924 4595 5.046735 GCTCCTCATGTACCACATAGATGAT 60.047 44.000 0.00 0.00 41.44 2.45
3925 4596 4.281941 GCTCCTCATGTACCACATAGATGA 59.718 45.833 0.00 0.00 40.38 2.92
3944 4615 3.193056 GGATAGTAACATACTCCCGCTCC 59.807 52.174 0.00 0.00 40.14 4.70
4081 4754 8.559536 ACTTATTTACCATTCAACGATAGCATG 58.440 33.333 0.00 0.00 42.67 4.06
4088 4761 7.879160 ACTAACCACTTATTTACCATTCAACGA 59.121 33.333 0.00 0.00 0.00 3.85
4106 4779 2.874086 ACTTACCGTGCAAACTAACCAC 59.126 45.455 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.