Multiple sequence alignment - TraesCS3B01G450100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G450100 chr3B 100.000 2380 0 0 1 2380 690563311 690565690 0.000000e+00 4396.0
1 TraesCS3B01G450100 chr3B 88.568 866 85 10 1524 2380 576938118 576937258 0.000000e+00 1038.0
2 TraesCS3B01G450100 chr3B 88.120 867 84 15 1524 2380 576931616 576930759 0.000000e+00 1013.0
3 TraesCS3B01G450100 chr3B 79.726 656 91 27 848 1487 690450066 690450695 1.010000e-118 436.0
4 TraesCS3B01G450100 chr3B 79.389 655 83 34 859 1487 690463106 690463734 4.730000e-112 414.0
5 TraesCS3B01G450100 chr3B 93.913 230 14 0 736 965 689305446 689305217 4.870000e-92 348.0
6 TraesCS3B01G450100 chr3B 84.068 295 27 10 1 285 689306140 689305856 1.400000e-67 267.0
7 TraesCS3B01G450100 chr3B 86.992 123 12 4 277 396 689305703 689305824 4.130000e-28 135.0
8 TraesCS3B01G450100 chr3B 100.000 70 0 0 394 463 689305512 689305443 1.920000e-26 130.0
9 TraesCS3B01G450100 chr3B 91.525 59 1 1 957 1015 689305122 689305176 7.050000e-11 78.7
10 TraesCS3B01G450100 chr7B 90.149 873 71 10 1517 2380 628357696 628358562 0.000000e+00 1122.0
11 TraesCS3B01G450100 chr1B 90.241 871 68 14 1520 2380 431648277 431647414 0.000000e+00 1122.0
12 TraesCS3B01G450100 chr1B 87.991 866 85 14 1525 2380 559837429 559836573 0.000000e+00 1005.0
13 TraesCS3B01G450100 chr1B 98.925 279 3 0 460 738 3574850 3574572 1.270000e-137 499.0
14 TraesCS3B01G450100 chr1B 83.721 86 13 1 135 220 452755549 452755465 1.960000e-11 80.5
15 TraesCS3B01G450100 chr2B 89.714 875 74 12 1516 2380 161148508 161149376 0.000000e+00 1103.0
16 TraesCS3B01G450100 chr2B 89.068 869 78 13 1525 2380 408876050 408875186 0.000000e+00 1062.0
17 TraesCS3B01G450100 chr2B 88.941 859 88 7 1526 2380 520918190 520917335 0.000000e+00 1053.0
18 TraesCS3B01G450100 chr2B 99.273 275 2 0 462 736 250280260 250279986 4.570000e-137 497.0
19 TraesCS3B01G450100 chr2B 98.566 279 4 0 460 738 663491286 663491008 5.910000e-136 494.0
20 TraesCS3B01G450100 chr2B 97.865 281 6 0 459 739 498445958 498446238 9.890000e-134 486.0
21 TraesCS3B01G450100 chr4B 89.862 868 73 11 1524 2380 70563442 70564305 0.000000e+00 1101.0
22 TraesCS3B01G450100 chr4B 98.208 279 5 0 460 738 572559329 572559607 2.750000e-134 488.0
23 TraesCS3B01G450100 chr3A 90.537 782 50 13 764 1524 658499799 658500577 0.000000e+00 1013.0
24 TraesCS3B01G450100 chr3A 86.047 688 44 18 839 1517 658327115 658327759 0.000000e+00 691.0
25 TraesCS3B01G450100 chr3A 85.752 379 42 7 988 1364 658316153 658316521 7.980000e-105 390.0
26 TraesCS3B01G450100 chr3D 85.396 808 59 27 758 1525 523615622 523616410 0.000000e+00 784.0
27 TraesCS3B01G450100 chrUn 98.571 280 4 0 457 736 302184162 302184441 1.640000e-136 496.0
28 TraesCS3B01G450100 chr5B 98.571 280 4 0 459 738 496329147 496329426 1.640000e-136 496.0
29 TraesCS3B01G450100 chr5B 98.208 279 5 0 460 738 432032189 432031911 2.750000e-134 488.0
30 TraesCS3B01G450100 chr5B 85.417 96 14 0 121 216 331282028 331281933 1.510000e-17 100.0
31 TraesCS3B01G450100 chr6B 98.221 281 5 0 459 739 189566514 189566234 2.130000e-135 492.0
32 TraesCS3B01G450100 chr5A 83.000 100 14 3 121 220 523453861 523453957 1.170000e-13 87.9
33 TraesCS3B01G450100 chr4A 85.294 68 8 2 290 357 569885817 569885752 4.240000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G450100 chr3B 690563311 690565690 2379 False 4396.000000 4396 100.000000 1 2380 1 chr3B.!!$F3 2379
1 TraesCS3B01G450100 chr3B 576937258 576938118 860 True 1038.000000 1038 88.568000 1524 2380 1 chr3B.!!$R2 856
2 TraesCS3B01G450100 chr3B 576930759 576931616 857 True 1013.000000 1013 88.120000 1524 2380 1 chr3B.!!$R1 856
3 TraesCS3B01G450100 chr3B 690450066 690450695 629 False 436.000000 436 79.726000 848 1487 1 chr3B.!!$F1 639
4 TraesCS3B01G450100 chr3B 690463106 690463734 628 False 414.000000 414 79.389000 859 1487 1 chr3B.!!$F2 628
5 TraesCS3B01G450100 chr3B 689305217 689306140 923 True 248.333333 348 92.660333 1 965 3 chr3B.!!$R3 964
6 TraesCS3B01G450100 chr7B 628357696 628358562 866 False 1122.000000 1122 90.149000 1517 2380 1 chr7B.!!$F1 863
7 TraesCS3B01G450100 chr1B 431647414 431648277 863 True 1122.000000 1122 90.241000 1520 2380 1 chr1B.!!$R2 860
8 TraesCS3B01G450100 chr1B 559836573 559837429 856 True 1005.000000 1005 87.991000 1525 2380 1 chr1B.!!$R4 855
9 TraesCS3B01G450100 chr2B 161148508 161149376 868 False 1103.000000 1103 89.714000 1516 2380 1 chr2B.!!$F1 864
10 TraesCS3B01G450100 chr2B 408875186 408876050 864 True 1062.000000 1062 89.068000 1525 2380 1 chr2B.!!$R2 855
11 TraesCS3B01G450100 chr2B 520917335 520918190 855 True 1053.000000 1053 88.941000 1526 2380 1 chr2B.!!$R3 854
12 TraesCS3B01G450100 chr4B 70563442 70564305 863 False 1101.000000 1101 89.862000 1524 2380 1 chr4B.!!$F1 856
13 TraesCS3B01G450100 chr3A 658499799 658500577 778 False 1013.000000 1013 90.537000 764 1524 1 chr3A.!!$F3 760
14 TraesCS3B01G450100 chr3A 658327115 658327759 644 False 691.000000 691 86.047000 839 1517 1 chr3A.!!$F2 678
15 TraesCS3B01G450100 chr3D 523615622 523616410 788 False 784.000000 784 85.396000 758 1525 1 chr3D.!!$F1 767

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
938 1216 0.037326 GCCATCTCGTGTGTTCCTCA 60.037 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2092 2432 5.813513 AGAAAATGGCCATTCAAGAAGTT 57.186 34.783 30.74 19.01 0.0 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 65 3.326747 GGATACAAAGTGAACGTGCTCT 58.673 45.455 0.00 0.00 0.00 4.09
64 66 3.746492 GGATACAAAGTGAACGTGCTCTT 59.254 43.478 4.99 4.99 0.00 2.85
65 67 4.213482 GGATACAAAGTGAACGTGCTCTTT 59.787 41.667 16.18 16.18 33.34 2.52
66 68 5.277828 GGATACAAAGTGAACGTGCTCTTTT 60.278 40.000 18.73 13.23 31.42 2.27
67 69 3.758300 ACAAAGTGAACGTGCTCTTTTG 58.242 40.909 18.73 15.56 31.42 2.44
68 70 3.438781 ACAAAGTGAACGTGCTCTTTTGA 59.561 39.130 18.73 0.00 31.42 2.69
73 75 2.151202 GAACGTGCTCTTTTGATCCCA 58.849 47.619 0.00 0.00 0.00 4.37
77 79 1.203287 GTGCTCTTTTGATCCCAAGCC 59.797 52.381 0.00 0.00 33.23 4.35
83 85 0.893270 TTTGATCCCAAGCCCACGTG 60.893 55.000 9.08 9.08 33.23 4.49
91 93 2.828868 AGCCCACGTGCTTTCTGA 59.171 55.556 10.91 0.00 38.85 3.27
101 103 2.096069 CGTGCTTTCTGATGAACAGTGG 60.096 50.000 0.00 0.00 45.86 4.00
105 107 4.456911 TGCTTTCTGATGAACAGTGGAATC 59.543 41.667 0.00 0.00 45.86 2.52
106 108 4.142513 GCTTTCTGATGAACAGTGGAATCC 60.143 45.833 0.00 0.00 45.86 3.01
110 112 4.761739 TCTGATGAACAGTGGAATCCAAAC 59.238 41.667 2.31 0.00 45.86 2.93
115 117 6.573664 TGAACAGTGGAATCCAAACAATAG 57.426 37.500 2.31 0.00 34.18 1.73
173 180 2.798976 TGAATGTTTTGACTGCCTGC 57.201 45.000 0.00 0.00 0.00 4.85
177 184 4.280425 TGAATGTTTTGACTGCCTGCAATA 59.720 37.500 0.00 0.00 0.00 1.90
216 223 5.388654 ACATTCTTGAAGGTCTGGACAAAT 58.611 37.500 3.10 0.00 0.00 2.32
225 237 5.904362 AGGTCTGGACAAATAAATGCTTC 57.096 39.130 3.10 0.00 0.00 3.86
227 239 4.462483 GGTCTGGACAAATAAATGCTTCCA 59.538 41.667 3.10 0.00 0.00 3.53
229 241 5.863935 GTCTGGACAAATAAATGCTTCCAAC 59.136 40.000 0.00 0.00 0.00 3.77
244 256 5.362430 TGCTTCCAACAATAGTCTTTTTGGT 59.638 36.000 6.18 0.00 38.32 3.67
249 261 5.990996 CCAACAATAGTCTTTTTGGTGCATT 59.009 36.000 7.44 0.00 38.84 3.56
278 290 2.166907 TTGCCCAAACCTCCAAGAAA 57.833 45.000 0.00 0.00 0.00 2.52
279 291 2.166907 TGCCCAAACCTCCAAGAAAA 57.833 45.000 0.00 0.00 0.00 2.29
281 293 2.368221 TGCCCAAACCTCCAAGAAAATG 59.632 45.455 0.00 0.00 0.00 2.32
282 294 2.368548 GCCCAAACCTCCAAGAAAATGT 59.631 45.455 0.00 0.00 0.00 2.71
284 296 3.640967 CCCAAACCTCCAAGAAAATGTCA 59.359 43.478 0.00 0.00 0.00 3.58
285 297 4.100808 CCCAAACCTCCAAGAAAATGTCAA 59.899 41.667 0.00 0.00 0.00 3.18
286 298 5.221702 CCCAAACCTCCAAGAAAATGTCAAT 60.222 40.000 0.00 0.00 0.00 2.57
289 301 7.546667 CCAAACCTCCAAGAAAATGTCAATATG 59.453 37.037 0.00 0.00 0.00 1.78
290 302 6.780457 ACCTCCAAGAAAATGTCAATATGG 57.220 37.500 0.00 0.00 0.00 2.74
291 303 6.493166 ACCTCCAAGAAAATGTCAATATGGA 58.507 36.000 0.00 0.00 34.71 3.41
293 305 7.636150 CTCCAAGAAAATGTCAATATGGAGT 57.364 36.000 9.72 0.00 44.81 3.85
295 307 9.347240 CTCCAAGAAAATGTCAATATGGAGTAT 57.653 33.333 9.72 0.00 44.81 2.12
296 308 9.699410 TCCAAGAAAATGTCAATATGGAGTATT 57.301 29.630 0.00 0.00 33.23 1.89
305 317 7.100409 TGTCAATATGGAGTATTTGAACACGA 58.900 34.615 0.00 0.00 30.53 4.35
306 318 7.277760 TGTCAATATGGAGTATTTGAACACGAG 59.722 37.037 0.00 0.00 30.53 4.18
307 319 6.257849 TCAATATGGAGTATTTGAACACGAGC 59.742 38.462 0.00 0.00 30.53 5.03
308 320 3.678056 TGGAGTATTTGAACACGAGCT 57.322 42.857 0.00 0.00 0.00 4.09
309 321 3.585862 TGGAGTATTTGAACACGAGCTC 58.414 45.455 2.73 2.73 0.00 4.09
311 323 3.368236 GGAGTATTTGAACACGAGCTCAC 59.632 47.826 15.40 0.00 0.00 3.51
313 325 4.569943 AGTATTTGAACACGAGCTCACAT 58.430 39.130 15.40 0.00 0.00 3.21
314 326 3.818961 ATTTGAACACGAGCTCACATG 57.181 42.857 15.40 11.06 0.00 3.21
315 327 0.867746 TTGAACACGAGCTCACATGC 59.132 50.000 15.40 0.11 0.00 4.06
325 337 3.345508 AGCTCACATGCTCTCAAATGA 57.654 42.857 0.00 0.00 39.34 2.57
326 338 3.682696 AGCTCACATGCTCTCAAATGAA 58.317 40.909 0.00 0.00 39.34 2.57
327 339 3.439476 AGCTCACATGCTCTCAAATGAAC 59.561 43.478 0.00 0.00 39.34 3.18
328 340 3.189910 GCTCACATGCTCTCAAATGAACA 59.810 43.478 0.00 0.00 0.00 3.18
329 341 4.672024 GCTCACATGCTCTCAAATGAACAG 60.672 45.833 0.00 0.00 0.00 3.16
330 342 4.392047 TCACATGCTCTCAAATGAACAGT 58.608 39.130 0.00 0.00 0.00 3.55
331 343 5.550290 TCACATGCTCTCAAATGAACAGTA 58.450 37.500 0.00 0.00 0.00 2.74
332 344 5.997129 TCACATGCTCTCAAATGAACAGTAA 59.003 36.000 0.00 0.00 0.00 2.24
333 345 6.486320 TCACATGCTCTCAAATGAACAGTAAA 59.514 34.615 0.00 0.00 0.00 2.01
334 346 6.800408 CACATGCTCTCAAATGAACAGTAAAG 59.200 38.462 0.00 0.00 0.00 1.85
335 347 6.488006 ACATGCTCTCAAATGAACAGTAAAGT 59.512 34.615 0.00 0.00 0.00 2.66
336 348 6.545504 TGCTCTCAAATGAACAGTAAAGTC 57.454 37.500 0.00 0.00 0.00 3.01
337 349 6.054941 TGCTCTCAAATGAACAGTAAAGTCA 58.945 36.000 0.00 0.00 0.00 3.41
338 350 6.203530 TGCTCTCAAATGAACAGTAAAGTCAG 59.796 38.462 0.00 0.00 0.00 3.51
339 351 6.425114 GCTCTCAAATGAACAGTAAAGTCAGA 59.575 38.462 0.00 0.00 0.00 3.27
340 352 7.041780 GCTCTCAAATGAACAGTAAAGTCAGAA 60.042 37.037 0.00 0.00 0.00 3.02
341 353 8.731275 TCTCAAATGAACAGTAAAGTCAGAAA 57.269 30.769 0.00 0.00 0.00 2.52
342 354 8.612619 TCTCAAATGAACAGTAAAGTCAGAAAC 58.387 33.333 0.00 0.00 0.00 2.78
343 355 8.275015 TCAAATGAACAGTAAAGTCAGAAACA 57.725 30.769 0.00 0.00 0.00 2.83
344 356 8.735315 TCAAATGAACAGTAAAGTCAGAAACAA 58.265 29.630 0.00 0.00 0.00 2.83
384 396 6.727569 AAAAGAACTTTCGTTGCGATAAAC 57.272 33.333 0.21 0.00 35.23 2.01
392 404 3.362281 CGTTGCGATAAACGTTGATGA 57.638 42.857 1.85 0.00 46.02 2.92
463 724 3.193479 GGCAAGTCTTGGACCAAATAAGG 59.807 47.826 14.40 0.00 32.18 2.69
464 725 3.367395 GCAAGTCTTGGACCAAATAAGGC 60.367 47.826 14.40 6.26 32.18 4.35
465 726 4.082125 CAAGTCTTGGACCAAATAAGGCT 58.918 43.478 8.59 0.00 37.95 4.58
466 727 3.690460 AGTCTTGGACCAAATAAGGCTG 58.310 45.455 8.59 0.00 35.26 4.85
467 728 2.755103 GTCTTGGACCAAATAAGGCTGG 59.245 50.000 8.59 0.00 38.77 4.85
474 735 4.862641 ACCAAATAAGGCTGGTCATAGT 57.137 40.909 0.00 0.00 42.44 2.12
475 736 4.526970 ACCAAATAAGGCTGGTCATAGTG 58.473 43.478 0.00 0.00 42.44 2.74
476 737 3.885297 CCAAATAAGGCTGGTCATAGTGG 59.115 47.826 0.00 0.00 0.00 4.00
477 738 3.864789 AATAAGGCTGGTCATAGTGGG 57.135 47.619 0.00 0.00 0.00 4.61
478 739 2.561209 TAAGGCTGGTCATAGTGGGA 57.439 50.000 0.00 0.00 0.00 4.37
479 740 1.207791 AAGGCTGGTCATAGTGGGAG 58.792 55.000 0.00 0.00 0.00 4.30
480 741 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.000 0.00 0.00 0.00 3.85
481 742 1.291033 AGGCTGGTCATAGTGGGAGTA 59.709 52.381 0.00 0.00 0.00 2.59
482 743 2.116238 GGCTGGTCATAGTGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
483 744 2.158943 GGCTGGTCATAGTGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
484 745 2.500098 GCTGGTCATAGTGGGAGTAACA 59.500 50.000 0.00 0.00 0.00 2.41
485 746 3.134804 GCTGGTCATAGTGGGAGTAACAT 59.865 47.826 0.00 0.00 0.00 2.71
486 747 4.344102 GCTGGTCATAGTGGGAGTAACATA 59.656 45.833 0.00 0.00 0.00 2.29
487 748 5.509840 GCTGGTCATAGTGGGAGTAACATAG 60.510 48.000 0.00 0.00 0.00 2.23
488 749 4.899457 TGGTCATAGTGGGAGTAACATAGG 59.101 45.833 0.00 0.00 0.00 2.57
489 750 4.900054 GGTCATAGTGGGAGTAACATAGGT 59.100 45.833 0.00 0.00 0.00 3.08
490 751 6.073314 GGTCATAGTGGGAGTAACATAGGTA 58.927 44.000 0.00 0.00 0.00 3.08
491 752 6.208994 GGTCATAGTGGGAGTAACATAGGTAG 59.791 46.154 0.00 0.00 0.00 3.18
492 753 6.776603 GTCATAGTGGGAGTAACATAGGTAGT 59.223 42.308 0.00 0.00 0.00 2.73
493 754 7.941238 GTCATAGTGGGAGTAACATAGGTAGTA 59.059 40.741 0.00 0.00 0.00 1.82
494 755 8.505246 TCATAGTGGGAGTAACATAGGTAGTAA 58.495 37.037 0.00 0.00 0.00 2.24
495 756 8.574737 CATAGTGGGAGTAACATAGGTAGTAAC 58.425 40.741 0.00 0.00 0.00 2.50
496 757 6.496743 AGTGGGAGTAACATAGGTAGTAACA 58.503 40.000 0.00 0.00 0.00 2.41
497 758 7.130775 AGTGGGAGTAACATAGGTAGTAACAT 58.869 38.462 0.00 0.00 0.00 2.71
498 759 8.284435 AGTGGGAGTAACATAGGTAGTAACATA 58.716 37.037 0.00 0.00 0.00 2.29
499 760 8.574737 GTGGGAGTAACATAGGTAGTAACATAG 58.425 40.741 0.00 0.00 0.00 2.23
500 761 8.505246 TGGGAGTAACATAGGTAGTAACATAGA 58.495 37.037 0.00 0.00 0.00 1.98
501 762 9.531158 GGGAGTAACATAGGTAGTAACATAGAT 57.469 37.037 0.00 0.00 0.00 1.98
503 764 9.843334 GAGTAACATAGGTAGTAACATAGATGC 57.157 37.037 0.00 0.00 0.00 3.91
504 765 8.804204 AGTAACATAGGTAGTAACATAGATGCC 58.196 37.037 0.00 0.00 0.00 4.40
505 766 7.612065 AACATAGGTAGTAACATAGATGCCA 57.388 36.000 0.00 0.00 0.00 4.92
506 767 6.994221 ACATAGGTAGTAACATAGATGCCAC 58.006 40.000 0.00 0.00 0.00 5.01
507 768 6.553476 ACATAGGTAGTAACATAGATGCCACA 59.447 38.462 0.00 0.00 0.00 4.17
508 769 7.235606 ACATAGGTAGTAACATAGATGCCACAT 59.764 37.037 0.00 0.00 0.00 3.21
509 770 8.749354 CATAGGTAGTAACATAGATGCCACATA 58.251 37.037 0.00 0.00 0.00 2.29
510 771 7.612065 AGGTAGTAACATAGATGCCACATAA 57.388 36.000 0.00 0.00 0.00 1.90
511 772 7.671302 AGGTAGTAACATAGATGCCACATAAG 58.329 38.462 0.00 0.00 0.00 1.73
512 773 6.369065 GGTAGTAACATAGATGCCACATAAGC 59.631 42.308 0.00 0.00 0.00 3.09
513 774 5.928976 AGTAACATAGATGCCACATAAGCA 58.071 37.500 0.00 0.00 45.94 3.91
514 775 6.356556 AGTAACATAGATGCCACATAAGCAA 58.643 36.000 0.00 0.00 44.83 3.91
515 776 6.828273 AGTAACATAGATGCCACATAAGCAAA 59.172 34.615 0.00 0.00 44.83 3.68
516 777 6.528537 AACATAGATGCCACATAAGCAAAA 57.471 33.333 0.00 0.00 44.83 2.44
517 778 6.528537 ACATAGATGCCACATAAGCAAAAA 57.471 33.333 0.00 0.00 44.83 1.94
518 779 7.116075 ACATAGATGCCACATAAGCAAAAAT 57.884 32.000 0.00 0.00 44.83 1.82
519 780 6.982141 ACATAGATGCCACATAAGCAAAAATG 59.018 34.615 0.00 0.00 44.83 2.32
520 781 5.410355 AGATGCCACATAAGCAAAAATGT 57.590 34.783 0.00 0.00 44.83 2.71
521 782 5.797051 AGATGCCACATAAGCAAAAATGTT 58.203 33.333 0.00 0.00 44.83 2.71
522 783 5.640357 AGATGCCACATAAGCAAAAATGTTG 59.360 36.000 0.00 0.00 44.83 3.33
523 784 4.953667 TGCCACATAAGCAAAAATGTTGA 58.046 34.783 0.00 0.00 37.28 3.18
524 785 5.549347 TGCCACATAAGCAAAAATGTTGAT 58.451 33.333 0.00 0.00 37.28 2.57
525 786 5.408909 TGCCACATAAGCAAAAATGTTGATG 59.591 36.000 0.00 0.00 37.28 3.07
526 787 5.409214 GCCACATAAGCAAAAATGTTGATGT 59.591 36.000 0.00 0.00 34.12 3.06
527 788 6.619018 GCCACATAAGCAAAAATGTTGATGTG 60.619 38.462 13.31 13.31 41.53 3.21
528 789 6.823531 CACATAAGCAAAAATGTTGATGTGG 58.176 36.000 12.72 0.00 39.34 4.17
529 790 5.409214 ACATAAGCAAAAATGTTGATGTGGC 59.591 36.000 0.00 0.00 32.43 5.01
530 791 3.472283 AGCAAAAATGTTGATGTGGCA 57.528 38.095 0.00 0.00 0.00 4.92
531 792 3.806380 AGCAAAAATGTTGATGTGGCAA 58.194 36.364 0.00 0.00 0.00 4.52
532 793 3.810941 AGCAAAAATGTTGATGTGGCAAG 59.189 39.130 0.00 0.00 0.00 4.01
533 794 3.560896 GCAAAAATGTTGATGTGGCAAGT 59.439 39.130 0.00 0.00 0.00 3.16
534 795 4.749099 GCAAAAATGTTGATGTGGCAAGTA 59.251 37.500 0.00 0.00 0.00 2.24
535 796 5.107375 GCAAAAATGTTGATGTGGCAAGTAG 60.107 40.000 0.00 0.00 0.00 2.57
536 797 5.789643 AAAATGTTGATGTGGCAAGTAGT 57.210 34.783 0.00 0.00 0.00 2.73
537 798 5.789643 AAATGTTGATGTGGCAAGTAGTT 57.210 34.783 0.00 0.00 0.00 2.24
538 799 6.892658 AAATGTTGATGTGGCAAGTAGTTA 57.107 33.333 0.00 0.00 0.00 2.24
539 800 6.892658 AATGTTGATGTGGCAAGTAGTTAA 57.107 33.333 0.00 0.00 0.00 2.01
540 801 7.466746 AATGTTGATGTGGCAAGTAGTTAAT 57.533 32.000 0.00 0.00 0.00 1.40
541 802 6.252967 TGTTGATGTGGCAAGTAGTTAATG 57.747 37.500 0.00 0.00 0.00 1.90
542 803 6.000840 TGTTGATGTGGCAAGTAGTTAATGA 58.999 36.000 0.00 0.00 0.00 2.57
543 804 6.149308 TGTTGATGTGGCAAGTAGTTAATGAG 59.851 38.462 0.00 0.00 0.00 2.90
544 805 5.185454 TGATGTGGCAAGTAGTTAATGAGG 58.815 41.667 0.00 0.00 0.00 3.86
545 806 4.901197 TGTGGCAAGTAGTTAATGAGGA 57.099 40.909 0.00 0.00 0.00 3.71
546 807 4.832248 TGTGGCAAGTAGTTAATGAGGAG 58.168 43.478 0.00 0.00 0.00 3.69
547 808 4.530553 TGTGGCAAGTAGTTAATGAGGAGA 59.469 41.667 0.00 0.00 0.00 3.71
548 809 5.112686 GTGGCAAGTAGTTAATGAGGAGAG 58.887 45.833 0.00 0.00 0.00 3.20
549 810 5.023452 TGGCAAGTAGTTAATGAGGAGAGA 58.977 41.667 0.00 0.00 0.00 3.10
550 811 5.127845 TGGCAAGTAGTTAATGAGGAGAGAG 59.872 44.000 0.00 0.00 0.00 3.20
551 812 5.452636 GGCAAGTAGTTAATGAGGAGAGAGG 60.453 48.000 0.00 0.00 0.00 3.69
552 813 5.596845 CAAGTAGTTAATGAGGAGAGAGGC 58.403 45.833 0.00 0.00 0.00 4.70
553 814 4.873010 AGTAGTTAATGAGGAGAGAGGCA 58.127 43.478 0.00 0.00 0.00 4.75
554 815 5.273208 AGTAGTTAATGAGGAGAGAGGCAA 58.727 41.667 0.00 0.00 0.00 4.52
555 816 5.721960 AGTAGTTAATGAGGAGAGAGGCAAA 59.278 40.000 0.00 0.00 0.00 3.68
556 817 5.707066 AGTTAATGAGGAGAGAGGCAAAT 57.293 39.130 0.00 0.00 0.00 2.32
557 818 6.814954 AGTTAATGAGGAGAGAGGCAAATA 57.185 37.500 0.00 0.00 0.00 1.40
558 819 6.825610 AGTTAATGAGGAGAGAGGCAAATAG 58.174 40.000 0.00 0.00 0.00 1.73
559 820 6.613271 AGTTAATGAGGAGAGAGGCAAATAGA 59.387 38.462 0.00 0.00 0.00 1.98
560 821 5.549742 AATGAGGAGAGAGGCAAATAGAG 57.450 43.478 0.00 0.00 0.00 2.43
561 822 3.987745 TGAGGAGAGAGGCAAATAGAGT 58.012 45.455 0.00 0.00 0.00 3.24
562 823 5.130705 TGAGGAGAGAGGCAAATAGAGTA 57.869 43.478 0.00 0.00 0.00 2.59
563 824 5.519808 TGAGGAGAGAGGCAAATAGAGTAA 58.480 41.667 0.00 0.00 0.00 2.24
564 825 5.361285 TGAGGAGAGAGGCAAATAGAGTAAC 59.639 44.000 0.00 0.00 0.00 2.50
565 826 4.651962 AGGAGAGAGGCAAATAGAGTAACC 59.348 45.833 0.00 0.00 0.00 2.85
566 827 4.651962 GGAGAGAGGCAAATAGAGTAACCT 59.348 45.833 0.00 0.00 0.00 3.50
567 828 5.834204 GGAGAGAGGCAAATAGAGTAACCTA 59.166 44.000 0.00 0.00 0.00 3.08
568 829 6.324254 GGAGAGAGGCAAATAGAGTAACCTAA 59.676 42.308 0.00 0.00 0.00 2.69
569 830 7.015779 GGAGAGAGGCAAATAGAGTAACCTAAT 59.984 40.741 0.00 0.00 0.00 1.73
570 831 9.080097 GAGAGAGGCAAATAGAGTAACCTAATA 57.920 37.037 0.00 0.00 0.00 0.98
571 832 9.608718 AGAGAGGCAAATAGAGTAACCTAATAT 57.391 33.333 0.00 0.00 0.00 1.28
572 833 9.646427 GAGAGGCAAATAGAGTAACCTAATATG 57.354 37.037 0.00 0.00 0.00 1.78
573 834 9.160412 AGAGGCAAATAGAGTAACCTAATATGT 57.840 33.333 0.00 0.00 0.00 2.29
574 835 9.780186 GAGGCAAATAGAGTAACCTAATATGTT 57.220 33.333 0.00 0.00 0.00 2.71
583 844 9.209048 AGAGTAACCTAATATGTTACCATCACA 57.791 33.333 12.73 0.00 45.83 3.58
584 845 9.998106 GAGTAACCTAATATGTTACCATCACAT 57.002 33.333 12.73 0.00 45.83 3.21
587 848 8.848474 AACCTAATATGTTACCATCACATAGC 57.152 34.615 0.00 0.00 39.83 2.97
588 849 7.097192 ACCTAATATGTTACCATCACATAGCG 58.903 38.462 0.00 0.00 39.83 4.26
589 850 5.862924 AATATGTTACCATCACATAGCGC 57.137 39.130 0.00 0.00 39.83 5.92
590 851 2.979814 TGTTACCATCACATAGCGCT 57.020 45.000 17.26 17.26 0.00 5.92
591 852 3.260475 TGTTACCATCACATAGCGCTT 57.740 42.857 18.68 0.00 0.00 4.68
592 853 3.605634 TGTTACCATCACATAGCGCTTT 58.394 40.909 18.68 4.25 0.00 3.51
593 854 3.621268 TGTTACCATCACATAGCGCTTTC 59.379 43.478 18.68 0.00 0.00 2.62
594 855 1.668419 ACCATCACATAGCGCTTTCC 58.332 50.000 18.68 0.00 0.00 3.13
595 856 1.065491 ACCATCACATAGCGCTTTCCA 60.065 47.619 18.68 0.00 0.00 3.53
596 857 2.016318 CCATCACATAGCGCTTTCCAA 58.984 47.619 18.68 0.00 0.00 3.53
597 858 2.620115 CCATCACATAGCGCTTTCCAAT 59.380 45.455 18.68 0.00 0.00 3.16
598 859 3.549423 CCATCACATAGCGCTTTCCAATG 60.549 47.826 18.68 15.83 0.00 2.82
599 860 1.401552 TCACATAGCGCTTTCCAATGC 59.598 47.619 18.68 0.00 0.00 3.56
600 861 1.132834 CACATAGCGCTTTCCAATGCA 59.867 47.619 18.68 0.00 0.00 3.96
601 862 1.818060 ACATAGCGCTTTCCAATGCAA 59.182 42.857 18.68 0.00 0.00 4.08
602 863 2.230992 ACATAGCGCTTTCCAATGCAAA 59.769 40.909 18.68 0.00 0.00 3.68
603 864 3.252400 CATAGCGCTTTCCAATGCAAAA 58.748 40.909 18.68 0.00 0.00 2.44
604 865 2.460757 AGCGCTTTCCAATGCAAAAT 57.539 40.000 2.64 0.00 0.00 1.82
605 866 2.070783 AGCGCTTTCCAATGCAAAATG 58.929 42.857 2.64 0.00 0.00 2.32
606 867 2.067766 GCGCTTTCCAATGCAAAATGA 58.932 42.857 0.00 0.00 0.00 2.57
607 868 2.093152 GCGCTTTCCAATGCAAAATGAG 59.907 45.455 0.00 0.00 0.00 2.90
608 869 3.319755 CGCTTTCCAATGCAAAATGAGT 58.680 40.909 0.00 0.00 0.00 3.41
609 870 3.365820 CGCTTTCCAATGCAAAATGAGTC 59.634 43.478 0.00 0.00 0.00 3.36
610 871 4.563061 GCTTTCCAATGCAAAATGAGTCT 58.437 39.130 0.00 0.00 0.00 3.24
611 872 5.619757 CGCTTTCCAATGCAAAATGAGTCTA 60.620 40.000 0.00 0.00 0.00 2.59
612 873 5.574443 GCTTTCCAATGCAAAATGAGTCTAC 59.426 40.000 0.00 0.00 0.00 2.59
613 874 6.647334 TTTCCAATGCAAAATGAGTCTACA 57.353 33.333 0.00 0.00 0.00 2.74
614 875 6.647334 TTCCAATGCAAAATGAGTCTACAA 57.353 33.333 0.00 0.00 0.00 2.41
615 876 6.258230 TCCAATGCAAAATGAGTCTACAAG 57.742 37.500 0.00 0.00 0.00 3.16
616 877 6.003326 TCCAATGCAAAATGAGTCTACAAGA 58.997 36.000 0.00 0.00 0.00 3.02
617 878 6.072508 TCCAATGCAAAATGAGTCTACAAGAC 60.073 38.462 0.00 0.00 45.38 3.01
633 894 9.546909 GTCTACAAGACAATAAATGAACATGTG 57.453 33.333 0.00 0.00 44.45 3.21
634 895 9.283768 TCTACAAGACAATAAATGAACATGTGT 57.716 29.630 0.00 0.00 0.00 3.72
660 921 8.732746 ATTTTACTACACATATGACACTTCCC 57.267 34.615 10.38 0.00 0.00 3.97
661 922 6.860790 TTACTACACATATGACACTTCCCA 57.139 37.500 10.38 0.00 0.00 4.37
662 923 5.086104 ACTACACATATGACACTTCCCAC 57.914 43.478 10.38 0.00 0.00 4.61
663 924 4.777896 ACTACACATATGACACTTCCCACT 59.222 41.667 10.38 0.00 0.00 4.00
664 925 5.955959 ACTACACATATGACACTTCCCACTA 59.044 40.000 10.38 0.00 0.00 2.74
665 926 5.957771 ACACATATGACACTTCCCACTAT 57.042 39.130 10.38 0.00 0.00 2.12
666 927 7.783119 ACTACACATATGACACTTCCCACTATA 59.217 37.037 10.38 0.00 0.00 1.31
667 928 7.432148 ACACATATGACACTTCCCACTATAA 57.568 36.000 10.38 0.00 0.00 0.98
668 929 7.500992 ACACATATGACACTTCCCACTATAAG 58.499 38.462 10.38 0.00 0.00 1.73
669 930 6.931281 CACATATGACACTTCCCACTATAAGG 59.069 42.308 10.38 0.00 0.00 2.69
671 932 3.798515 TGACACTTCCCACTATAAGGGT 58.201 45.455 9.21 0.00 46.82 4.34
672 933 4.950361 TGACACTTCCCACTATAAGGGTA 58.050 43.478 9.21 0.63 46.82 3.69
673 934 4.960469 TGACACTTCCCACTATAAGGGTAG 59.040 45.833 12.42 12.42 46.82 3.18
679 940 7.613551 CTTCCCACTATAAGGGTAGTAACAT 57.386 40.000 9.21 0.00 46.82 2.71
680 941 8.716674 CTTCCCACTATAAGGGTAGTAACATA 57.283 38.462 9.21 0.00 46.82 2.29
681 942 8.716674 TTCCCACTATAAGGGTAGTAACATAG 57.283 38.462 9.21 0.00 46.82 2.23
682 943 8.060727 TCCCACTATAAGGGTAGTAACATAGA 57.939 38.462 9.21 0.00 46.82 1.98
683 944 8.168725 TCCCACTATAAGGGTAGTAACATAGAG 58.831 40.741 9.21 0.00 46.82 2.43
684 945 7.949006 CCCACTATAAGGGTAGTAACATAGAGT 59.051 40.741 2.34 0.00 41.61 3.24
691 952 8.443953 AAGGGTAGTAACATAGAGTAGTAACG 57.556 38.462 0.00 0.00 0.00 3.18
692 953 7.569240 AGGGTAGTAACATAGAGTAGTAACGT 58.431 38.462 0.00 0.00 0.00 3.99
693 954 8.705594 AGGGTAGTAACATAGAGTAGTAACGTA 58.294 37.037 0.00 0.00 0.00 3.57
694 955 9.495572 GGGTAGTAACATAGAGTAGTAACGTAT 57.504 37.037 0.00 0.00 0.00 3.06
696 957 9.804547 GTAGTAACATAGAGTAGTAACGTATGC 57.195 37.037 0.00 0.00 33.77 3.14
697 958 8.442632 AGTAACATAGAGTAGTAACGTATGCA 57.557 34.615 0.00 0.00 33.77 3.96
698 959 9.064706 AGTAACATAGAGTAGTAACGTATGCAT 57.935 33.333 3.79 3.79 33.77 3.96
699 960 9.114965 GTAACATAGAGTAGTAACGTATGCATG 57.885 37.037 10.16 0.00 33.77 4.06
700 961 7.273320 ACATAGAGTAGTAACGTATGCATGT 57.727 36.000 10.16 0.00 33.77 3.21
701 962 7.713750 ACATAGAGTAGTAACGTATGCATGTT 58.286 34.615 10.16 8.56 37.62 2.71
702 963 8.843262 ACATAGAGTAGTAACGTATGCATGTTA 58.157 33.333 10.16 7.49 35.49 2.41
713 974 8.767478 AACGTATGCATGTTACTACTTTAAGT 57.233 30.769 10.16 2.32 31.96 2.24
714 975 8.767478 ACGTATGCATGTTACTACTTTAAGTT 57.233 30.769 10.16 0.00 0.00 2.66
715 976 9.859427 ACGTATGCATGTTACTACTTTAAGTTA 57.141 29.630 10.16 0.00 0.00 2.24
719 980 8.767478 TGCATGTTACTACTTTAAGTTACTCC 57.233 34.615 1.94 0.00 31.82 3.85
720 981 7.820872 TGCATGTTACTACTTTAAGTTACTCCC 59.179 37.037 1.94 0.00 31.82 4.30
721 982 7.279536 GCATGTTACTACTTTAAGTTACTCCCC 59.720 40.741 1.94 0.00 31.82 4.81
722 983 7.854166 TGTTACTACTTTAAGTTACTCCCCA 57.146 36.000 1.94 0.00 31.82 4.96
723 984 7.670364 TGTTACTACTTTAAGTTACTCCCCAC 58.330 38.462 1.94 0.00 31.82 4.61
724 985 7.510343 TGTTACTACTTTAAGTTACTCCCCACT 59.490 37.037 1.94 0.00 31.82 4.00
725 986 9.025041 GTTACTACTTTAAGTTACTCCCCACTA 57.975 37.037 1.94 0.00 0.00 2.74
726 987 9.774071 TTACTACTTTAAGTTACTCCCCACTAT 57.226 33.333 1.94 0.00 0.00 2.12
727 988 8.075761 ACTACTTTAAGTTACTCCCCACTATG 57.924 38.462 1.94 0.00 0.00 2.23
728 989 7.897565 ACTACTTTAAGTTACTCCCCACTATGA 59.102 37.037 1.94 0.00 0.00 2.15
729 990 6.944096 ACTTTAAGTTACTCCCCACTATGAC 58.056 40.000 0.00 0.00 0.00 3.06
730 991 5.945144 TTAAGTTACTCCCCACTATGACC 57.055 43.478 0.00 0.00 0.00 4.02
731 992 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
732 993 3.375699 AGTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
733 994 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
734 995 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
735 996 0.692419 CTCCCCACTATGACCAGCCT 60.692 60.000 0.00 0.00 0.00 4.58
736 997 0.639943 TCCCCACTATGACCAGCCTA 59.360 55.000 0.00 0.00 0.00 3.93
737 998 1.009060 TCCCCACTATGACCAGCCTAA 59.991 52.381 0.00 0.00 0.00 2.69
738 999 1.843851 CCCCACTATGACCAGCCTAAA 59.156 52.381 0.00 0.00 0.00 1.85
739 1000 2.421529 CCCCACTATGACCAGCCTAAAC 60.422 54.545 0.00 0.00 0.00 2.01
740 1001 2.238646 CCCACTATGACCAGCCTAAACA 59.761 50.000 0.00 0.00 0.00 2.83
741 1002 3.535561 CCACTATGACCAGCCTAAACAG 58.464 50.000 0.00 0.00 0.00 3.16
742 1003 3.055094 CCACTATGACCAGCCTAAACAGT 60.055 47.826 0.00 0.00 0.00 3.55
743 1004 4.161565 CCACTATGACCAGCCTAAACAGTA 59.838 45.833 0.00 0.00 0.00 2.74
744 1005 5.352284 CACTATGACCAGCCTAAACAGTAG 58.648 45.833 0.00 0.00 0.00 2.57
745 1006 5.127194 CACTATGACCAGCCTAAACAGTAGA 59.873 44.000 0.00 0.00 0.00 2.59
746 1007 3.955650 TGACCAGCCTAAACAGTAGAC 57.044 47.619 0.00 0.00 0.00 2.59
831 1092 4.261801 ACCCTATCCATTGACGTTCTTTG 58.738 43.478 0.00 0.00 0.00 2.77
856 1131 6.389830 AATGCATTAATGTCCTTAATCGCA 57.610 33.333 11.02 14.05 41.94 5.10
929 1207 2.642139 AATGCTTTTGCCATCTCGTG 57.358 45.000 0.00 0.00 46.87 4.35
938 1216 0.037326 GCCATCTCGTGTGTTCCTCA 60.037 55.000 0.00 0.00 0.00 3.86
976 1258 2.106684 AGACAAACCAAGTCTTCCTCCC 59.893 50.000 0.00 0.00 43.47 4.30
1093 1389 1.543941 GCATCGCTTCATCGACTCGG 61.544 60.000 0.00 0.00 41.62 4.63
1114 1426 4.180817 GGCAAACAACCATATGCTTTACC 58.819 43.478 0.00 0.00 38.79 2.85
1127 1439 8.730680 CCATATGCTTTACCTTATTCATGGTAC 58.269 37.037 0.00 0.00 38.40 3.34
1211 1526 2.048597 CACAAGACGCCGCTACCA 60.049 61.111 0.00 0.00 0.00 3.25
1407 1728 5.590530 ACTAGTACCAGCTTTCTGAGATG 57.409 43.478 0.00 0.00 42.95 2.90
1550 1881 0.099259 CATATGCCCGTGTGTTGCAG 59.901 55.000 0.00 0.00 38.58 4.41
1565 1896 4.742659 GTGTTGCAGCGGAAGAAAAATTAA 59.257 37.500 0.00 0.00 0.00 1.40
1607 1938 7.283807 TGTGAGAATTATATGTGCAAGCAAGAT 59.716 33.333 0.00 0.00 0.00 2.40
1644 1975 6.490381 GTGAAAAAGGGACATTTAGGTTCTCT 59.510 38.462 0.00 0.00 0.00 3.10
1659 1990 2.033448 TCTGTTTCGCCGGGCATT 59.967 55.556 20.71 0.00 0.00 3.56
1680 2011 7.291567 GCATTAAGTAATCAATCCGCTACTTC 58.708 38.462 0.00 0.00 36.33 3.01
1690 2021 3.735237 TCCGCTACTTCTCCATTCATC 57.265 47.619 0.00 0.00 0.00 2.92
1763 2094 7.786464 AGGCCCATGAATTATTCAATCTACTTT 59.214 33.333 11.88 0.00 43.95 2.66
1823 2154 5.593909 TCTGAATATTGCCGGAAACATGAAT 59.406 36.000 5.05 0.00 0.00 2.57
2005 2342 3.386402 ACGGGAACATGTGTTGGAAATTT 59.614 39.130 0.00 0.00 38.56 1.82
2071 2411 9.804547 TTGCAATTGCGAAATTTATCTAAAAAC 57.195 25.926 24.58 0.00 45.83 2.43
2100 2440 7.985634 TTTTTCGAATTTGGAGAACTTCTTG 57.014 32.000 0.00 0.00 0.00 3.02
2104 2444 6.902341 TCGAATTTGGAGAACTTCTTGAATG 58.098 36.000 0.00 0.00 0.00 2.67
2376 2727 6.923928 AACACAAAAACAATGAGAAATGGG 57.076 33.333 0.00 0.00 0.00 4.00
2378 2729 4.213906 CACAAAAACAATGAGAAATGGGCC 59.786 41.667 0.00 0.00 0.00 5.80
2379 2730 4.141528 ACAAAAACAATGAGAAATGGGCCA 60.142 37.500 9.61 9.61 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.655769 CACTTTGTATCCAAATCAATCTATTCG 57.344 33.333 0.00 0.00 39.72 3.34
51 52 2.095718 GGGATCAAAAGAGCACGTTCAC 60.096 50.000 0.00 0.00 0.00 3.18
52 53 2.151202 GGGATCAAAAGAGCACGTTCA 58.849 47.619 0.00 0.00 0.00 3.18
53 54 2.151202 TGGGATCAAAAGAGCACGTTC 58.849 47.619 0.00 0.00 0.00 3.95
63 65 0.178975 ACGTGGGCTTGGGATCAAAA 60.179 50.000 0.00 0.00 31.77 2.44
64 66 0.893270 CACGTGGGCTTGGGATCAAA 60.893 55.000 7.95 0.00 31.77 2.69
65 67 1.303236 CACGTGGGCTTGGGATCAA 60.303 57.895 7.95 0.00 0.00 2.57
66 68 2.350895 CACGTGGGCTTGGGATCA 59.649 61.111 7.95 0.00 0.00 2.92
67 69 3.134127 GCACGTGGGCTTGGGATC 61.134 66.667 18.88 0.00 0.00 3.36
68 70 3.650950 AGCACGTGGGCTTGGGAT 61.651 61.111 18.88 0.00 42.71 3.85
77 79 1.872952 TGTTCATCAGAAAGCACGTGG 59.127 47.619 18.88 0.00 35.08 4.94
83 85 4.142513 GGATTCCACTGTTCATCAGAAAGC 60.143 45.833 0.00 0.00 46.27 3.51
91 93 6.721208 ACTATTGTTTGGATTCCACTGTTCAT 59.279 34.615 4.45 0.00 30.78 2.57
216 223 9.474920 CAAAAAGACTATTGTTGGAAGCATTTA 57.525 29.630 0.00 0.00 0.00 1.40
225 237 4.942852 TGCACCAAAAAGACTATTGTTGG 58.057 39.130 7.81 7.81 43.60 3.77
227 239 6.815089 TCAATGCACCAAAAAGACTATTGTT 58.185 32.000 0.00 0.00 0.00 2.83
229 241 7.894376 AATCAATGCACCAAAAAGACTATTG 57.106 32.000 0.00 0.00 0.00 1.90
260 272 2.166907 TTTTCTTGGAGGTTTGGGCA 57.833 45.000 0.00 0.00 0.00 5.36
261 273 2.368548 ACATTTTCTTGGAGGTTTGGGC 59.631 45.455 0.00 0.00 0.00 5.36
262 274 3.640967 TGACATTTTCTTGGAGGTTTGGG 59.359 43.478 0.00 0.00 0.00 4.12
263 275 4.935352 TGACATTTTCTTGGAGGTTTGG 57.065 40.909 0.00 0.00 0.00 3.28
264 276 7.546667 CCATATTGACATTTTCTTGGAGGTTTG 59.453 37.037 0.00 0.00 0.00 2.93
265 277 7.454380 TCCATATTGACATTTTCTTGGAGGTTT 59.546 33.333 0.00 0.00 0.00 3.27
266 278 6.953520 TCCATATTGACATTTTCTTGGAGGTT 59.046 34.615 0.00 0.00 0.00 3.50
278 290 8.397906 CGTGTTCAAATACTCCATATTGACATT 58.602 33.333 0.00 0.00 33.53 2.71
279 291 7.768582 TCGTGTTCAAATACTCCATATTGACAT 59.231 33.333 0.00 0.00 33.53 3.06
281 293 7.534085 TCGTGTTCAAATACTCCATATTGAC 57.466 36.000 0.00 0.00 33.53 3.18
282 294 6.257849 GCTCGTGTTCAAATACTCCATATTGA 59.742 38.462 0.00 0.00 33.53 2.57
284 296 6.349300 AGCTCGTGTTCAAATACTCCATATT 58.651 36.000 0.00 0.00 34.78 1.28
285 297 5.918608 AGCTCGTGTTCAAATACTCCATAT 58.081 37.500 0.00 0.00 0.00 1.78
286 298 5.105513 TGAGCTCGTGTTCAAATACTCCATA 60.106 40.000 9.64 0.00 30.53 2.74
289 301 3.368236 GTGAGCTCGTGTTCAAATACTCC 59.632 47.826 9.64 0.00 35.27 3.85
290 302 3.987868 TGTGAGCTCGTGTTCAAATACTC 59.012 43.478 9.64 0.00 35.27 2.59
291 303 3.990092 TGTGAGCTCGTGTTCAAATACT 58.010 40.909 9.64 0.00 35.27 2.12
292 304 4.641954 CATGTGAGCTCGTGTTCAAATAC 58.358 43.478 9.64 0.00 35.27 1.89
293 305 3.125146 GCATGTGAGCTCGTGTTCAAATA 59.875 43.478 9.64 0.00 35.27 1.40
295 307 1.264020 GCATGTGAGCTCGTGTTCAAA 59.736 47.619 9.64 0.98 35.27 2.69
296 308 0.867746 GCATGTGAGCTCGTGTTCAA 59.132 50.000 9.64 0.00 35.27 2.69
297 309 0.033920 AGCATGTGAGCTCGTGTTCA 59.966 50.000 9.64 0.00 42.18 3.18
298 310 2.832931 AGCATGTGAGCTCGTGTTC 58.167 52.632 9.64 0.00 42.18 3.18
306 318 3.189910 TGTTCATTTGAGAGCATGTGAGC 59.810 43.478 0.00 0.00 0.00 4.26
307 319 4.454847 ACTGTTCATTTGAGAGCATGTGAG 59.545 41.667 0.00 0.00 0.00 3.51
308 320 4.392047 ACTGTTCATTTGAGAGCATGTGA 58.608 39.130 0.00 0.00 0.00 3.58
309 321 4.761235 ACTGTTCATTTGAGAGCATGTG 57.239 40.909 0.00 0.00 0.00 3.21
311 323 6.906659 ACTTTACTGTTCATTTGAGAGCATG 58.093 36.000 0.00 0.00 0.00 4.06
313 325 6.054941 TGACTTTACTGTTCATTTGAGAGCA 58.945 36.000 0.00 0.00 0.00 4.26
314 326 6.425114 TCTGACTTTACTGTTCATTTGAGAGC 59.575 38.462 0.00 0.00 0.00 4.09
315 327 7.953158 TCTGACTTTACTGTTCATTTGAGAG 57.047 36.000 0.00 0.00 0.00 3.20
317 329 8.397906 TGTTTCTGACTTTACTGTTCATTTGAG 58.602 33.333 0.00 0.00 0.00 3.02
318 330 8.275015 TGTTTCTGACTTTACTGTTCATTTGA 57.725 30.769 0.00 0.00 0.00 2.69
319 331 8.909708 TTGTTTCTGACTTTACTGTTCATTTG 57.090 30.769 0.00 0.00 0.00 2.32
373 385 4.028509 GCATTCATCAACGTTTATCGCAAC 60.029 41.667 0.00 0.00 44.19 4.17
376 388 3.478516 GTGCATTCATCAACGTTTATCGC 59.521 43.478 0.00 0.00 44.19 4.58
377 389 4.028383 GGTGCATTCATCAACGTTTATCG 58.972 43.478 0.00 0.00 46.00 2.92
378 390 4.980590 TGGTGCATTCATCAACGTTTATC 58.019 39.130 0.00 0.00 28.67 1.75
379 391 4.458989 ACTGGTGCATTCATCAACGTTTAT 59.541 37.500 0.00 0.00 32.01 1.40
380 392 3.818210 ACTGGTGCATTCATCAACGTTTA 59.182 39.130 0.00 0.00 32.01 2.01
381 393 2.622942 ACTGGTGCATTCATCAACGTTT 59.377 40.909 0.00 0.00 32.01 3.60
382 394 2.226437 GACTGGTGCATTCATCAACGTT 59.774 45.455 0.00 0.00 32.01 3.99
383 395 1.806542 GACTGGTGCATTCATCAACGT 59.193 47.619 0.00 0.00 32.01 3.99
384 396 1.805943 TGACTGGTGCATTCATCAACG 59.194 47.619 0.00 0.00 32.01 4.10
385 397 3.693085 AGATGACTGGTGCATTCATCAAC 59.307 43.478 22.30 11.05 46.18 3.18
388 400 3.693085 ACAAGATGACTGGTGCATTCATC 59.307 43.478 16.74 16.74 45.01 2.92
389 401 3.693085 GACAAGATGACTGGTGCATTCAT 59.307 43.478 0.00 0.00 36.66 2.57
390 402 3.076621 GACAAGATGACTGGTGCATTCA 58.923 45.455 0.00 0.00 29.28 2.57
391 403 3.076621 TGACAAGATGACTGGTGCATTC 58.923 45.455 0.00 0.00 29.28 2.67
392 404 3.144657 TGACAAGATGACTGGTGCATT 57.855 42.857 0.00 0.00 29.28 3.56
463 724 2.500098 TGTTACTCCCACTATGACCAGC 59.500 50.000 0.00 0.00 0.00 4.85
464 725 5.011125 CCTATGTTACTCCCACTATGACCAG 59.989 48.000 0.00 0.00 0.00 4.00
465 726 4.899457 CCTATGTTACTCCCACTATGACCA 59.101 45.833 0.00 0.00 0.00 4.02
466 727 4.900054 ACCTATGTTACTCCCACTATGACC 59.100 45.833 0.00 0.00 0.00 4.02
467 728 6.776603 ACTACCTATGTTACTCCCACTATGAC 59.223 42.308 0.00 0.00 0.00 3.06
468 729 6.919158 ACTACCTATGTTACTCCCACTATGA 58.081 40.000 0.00 0.00 0.00 2.15
469 730 8.574737 GTTACTACCTATGTTACTCCCACTATG 58.425 40.741 0.00 0.00 0.00 2.23
470 731 8.284435 TGTTACTACCTATGTTACTCCCACTAT 58.716 37.037 0.00 0.00 0.00 2.12
471 732 7.642186 TGTTACTACCTATGTTACTCCCACTA 58.358 38.462 0.00 0.00 0.00 2.74
472 733 6.496743 TGTTACTACCTATGTTACTCCCACT 58.503 40.000 0.00 0.00 0.00 4.00
473 734 6.780457 TGTTACTACCTATGTTACTCCCAC 57.220 41.667 0.00 0.00 0.00 4.61
474 735 8.505246 TCTATGTTACTACCTATGTTACTCCCA 58.495 37.037 0.00 0.00 0.00 4.37
475 736 8.930846 TCTATGTTACTACCTATGTTACTCCC 57.069 38.462 0.00 0.00 0.00 4.30
477 738 9.843334 GCATCTATGTTACTACCTATGTTACTC 57.157 37.037 0.00 0.00 0.00 2.59
478 739 8.804204 GGCATCTATGTTACTACCTATGTTACT 58.196 37.037 0.00 0.00 0.00 2.24
479 740 8.582437 TGGCATCTATGTTACTACCTATGTTAC 58.418 37.037 0.00 0.00 0.00 2.50
480 741 8.582437 GTGGCATCTATGTTACTACCTATGTTA 58.418 37.037 0.00 0.00 0.00 2.41
481 742 7.070696 TGTGGCATCTATGTTACTACCTATGTT 59.929 37.037 0.00 0.00 0.00 2.71
482 743 6.553476 TGTGGCATCTATGTTACTACCTATGT 59.447 38.462 0.00 0.00 0.00 2.29
483 744 6.993079 TGTGGCATCTATGTTACTACCTATG 58.007 40.000 0.00 0.00 0.00 2.23
484 745 7.798710 ATGTGGCATCTATGTTACTACCTAT 57.201 36.000 0.00 0.00 0.00 2.57
485 746 8.715190 TTATGTGGCATCTATGTTACTACCTA 57.285 34.615 0.00 0.00 0.00 3.08
486 747 7.612065 TTATGTGGCATCTATGTTACTACCT 57.388 36.000 0.00 0.00 0.00 3.08
487 748 6.369065 GCTTATGTGGCATCTATGTTACTACC 59.631 42.308 0.00 0.00 0.00 3.18
488 749 6.929049 TGCTTATGTGGCATCTATGTTACTAC 59.071 38.462 0.00 0.00 34.56 2.73
489 750 7.061566 TGCTTATGTGGCATCTATGTTACTA 57.938 36.000 0.00 0.00 34.56 1.82
490 751 5.928976 TGCTTATGTGGCATCTATGTTACT 58.071 37.500 0.00 0.00 34.56 2.24
491 752 6.618287 TTGCTTATGTGGCATCTATGTTAC 57.382 37.500 0.00 0.00 39.54 2.50
492 753 7.637631 TTTTGCTTATGTGGCATCTATGTTA 57.362 32.000 0.00 0.00 39.54 2.41
493 754 6.528537 TTTTGCTTATGTGGCATCTATGTT 57.471 33.333 0.00 0.00 39.54 2.71
494 755 6.528537 TTTTTGCTTATGTGGCATCTATGT 57.471 33.333 0.00 0.00 39.54 2.29
495 756 6.982141 ACATTTTTGCTTATGTGGCATCTATG 59.018 34.615 0.00 0.00 39.54 2.23
496 757 7.116075 ACATTTTTGCTTATGTGGCATCTAT 57.884 32.000 0.00 0.00 39.54 1.98
497 758 6.528537 ACATTTTTGCTTATGTGGCATCTA 57.471 33.333 0.00 0.00 39.54 1.98
498 759 5.410355 ACATTTTTGCTTATGTGGCATCT 57.590 34.783 0.00 0.00 39.54 2.90
499 760 5.638657 TCAACATTTTTGCTTATGTGGCATC 59.361 36.000 0.00 0.00 39.54 3.91
500 761 5.549347 TCAACATTTTTGCTTATGTGGCAT 58.451 33.333 0.00 0.00 39.54 4.40
501 762 4.953667 TCAACATTTTTGCTTATGTGGCA 58.046 34.783 0.00 0.00 35.29 4.92
502 763 5.409214 ACATCAACATTTTTGCTTATGTGGC 59.591 36.000 0.00 0.00 35.29 5.01
503 764 6.823531 CACATCAACATTTTTGCTTATGTGG 58.176 36.000 0.00 0.00 39.34 4.17
504 765 6.619018 GCCACATCAACATTTTTGCTTATGTG 60.619 38.462 0.00 0.00 41.50 3.21
505 766 5.409214 GCCACATCAACATTTTTGCTTATGT 59.591 36.000 0.00 0.00 36.58 2.29
506 767 5.408909 TGCCACATCAACATTTTTGCTTATG 59.591 36.000 0.00 0.00 0.00 1.90
507 768 5.549347 TGCCACATCAACATTTTTGCTTAT 58.451 33.333 0.00 0.00 0.00 1.73
508 769 4.953667 TGCCACATCAACATTTTTGCTTA 58.046 34.783 0.00 0.00 0.00 3.09
509 770 3.806380 TGCCACATCAACATTTTTGCTT 58.194 36.364 0.00 0.00 0.00 3.91
510 771 3.472283 TGCCACATCAACATTTTTGCT 57.528 38.095 0.00 0.00 0.00 3.91
511 772 3.560896 ACTTGCCACATCAACATTTTTGC 59.439 39.130 0.00 0.00 0.00 3.68
512 773 5.984926 ACTACTTGCCACATCAACATTTTTG 59.015 36.000 0.00 0.00 0.00 2.44
513 774 6.160576 ACTACTTGCCACATCAACATTTTT 57.839 33.333 0.00 0.00 0.00 1.94
514 775 5.789643 ACTACTTGCCACATCAACATTTT 57.210 34.783 0.00 0.00 0.00 1.82
515 776 5.789643 AACTACTTGCCACATCAACATTT 57.210 34.783 0.00 0.00 0.00 2.32
516 777 6.892658 TTAACTACTTGCCACATCAACATT 57.107 33.333 0.00 0.00 0.00 2.71
517 778 6.658816 TCATTAACTACTTGCCACATCAACAT 59.341 34.615 0.00 0.00 0.00 2.71
518 779 6.000840 TCATTAACTACTTGCCACATCAACA 58.999 36.000 0.00 0.00 0.00 3.33
519 780 6.403636 CCTCATTAACTACTTGCCACATCAAC 60.404 42.308 0.00 0.00 0.00 3.18
520 781 5.647658 CCTCATTAACTACTTGCCACATCAA 59.352 40.000 0.00 0.00 0.00 2.57
521 782 5.045942 TCCTCATTAACTACTTGCCACATCA 60.046 40.000 0.00 0.00 0.00 3.07
522 783 5.428253 TCCTCATTAACTACTTGCCACATC 58.572 41.667 0.00 0.00 0.00 3.06
523 784 5.189736 TCTCCTCATTAACTACTTGCCACAT 59.810 40.000 0.00 0.00 0.00 3.21
524 785 4.530553 TCTCCTCATTAACTACTTGCCACA 59.469 41.667 0.00 0.00 0.00 4.17
525 786 5.086104 TCTCCTCATTAACTACTTGCCAC 57.914 43.478 0.00 0.00 0.00 5.01
526 787 5.023452 TCTCTCCTCATTAACTACTTGCCA 58.977 41.667 0.00 0.00 0.00 4.92
527 788 5.452636 CCTCTCTCCTCATTAACTACTTGCC 60.453 48.000 0.00 0.00 0.00 4.52
528 789 5.596845 CCTCTCTCCTCATTAACTACTTGC 58.403 45.833 0.00 0.00 0.00 4.01
529 790 5.127845 TGCCTCTCTCCTCATTAACTACTTG 59.872 44.000 0.00 0.00 0.00 3.16
530 791 5.273208 TGCCTCTCTCCTCATTAACTACTT 58.727 41.667 0.00 0.00 0.00 2.24
531 792 4.873010 TGCCTCTCTCCTCATTAACTACT 58.127 43.478 0.00 0.00 0.00 2.57
532 793 5.599999 TTGCCTCTCTCCTCATTAACTAC 57.400 43.478 0.00 0.00 0.00 2.73
533 794 6.814954 ATTTGCCTCTCTCCTCATTAACTA 57.185 37.500 0.00 0.00 0.00 2.24
534 795 5.707066 ATTTGCCTCTCTCCTCATTAACT 57.293 39.130 0.00 0.00 0.00 2.24
535 796 6.821388 TCTATTTGCCTCTCTCCTCATTAAC 58.179 40.000 0.00 0.00 0.00 2.01
536 797 6.613271 ACTCTATTTGCCTCTCTCCTCATTAA 59.387 38.462 0.00 0.00 0.00 1.40
537 798 6.139671 ACTCTATTTGCCTCTCTCCTCATTA 58.860 40.000 0.00 0.00 0.00 1.90
538 799 4.968080 ACTCTATTTGCCTCTCTCCTCATT 59.032 41.667 0.00 0.00 0.00 2.57
539 800 4.555689 ACTCTATTTGCCTCTCTCCTCAT 58.444 43.478 0.00 0.00 0.00 2.90
540 801 3.987745 ACTCTATTTGCCTCTCTCCTCA 58.012 45.455 0.00 0.00 0.00 3.86
541 802 5.221362 GGTTACTCTATTTGCCTCTCTCCTC 60.221 48.000 0.00 0.00 0.00 3.71
542 803 4.651962 GGTTACTCTATTTGCCTCTCTCCT 59.348 45.833 0.00 0.00 0.00 3.69
543 804 4.651962 AGGTTACTCTATTTGCCTCTCTCC 59.348 45.833 0.00 0.00 0.00 3.71
544 805 5.862678 AGGTTACTCTATTTGCCTCTCTC 57.137 43.478 0.00 0.00 0.00 3.20
545 806 7.922699 ATTAGGTTACTCTATTTGCCTCTCT 57.077 36.000 0.00 0.00 0.00 3.10
546 807 9.646427 CATATTAGGTTACTCTATTTGCCTCTC 57.354 37.037 0.00 0.00 0.00 3.20
547 808 9.160412 ACATATTAGGTTACTCTATTTGCCTCT 57.840 33.333 0.00 0.00 0.00 3.69
548 809 9.780186 AACATATTAGGTTACTCTATTTGCCTC 57.220 33.333 0.00 0.00 0.00 4.70
572 833 3.002348 GGAAAGCGCTATGTGATGGTAAC 59.998 47.826 12.05 0.00 0.00 2.50
573 834 3.202906 GGAAAGCGCTATGTGATGGTAA 58.797 45.455 12.05 0.00 0.00 2.85
574 835 2.169561 TGGAAAGCGCTATGTGATGGTA 59.830 45.455 12.05 0.00 0.00 3.25
575 836 1.065491 TGGAAAGCGCTATGTGATGGT 60.065 47.619 12.05 0.00 0.00 3.55
576 837 1.667236 TGGAAAGCGCTATGTGATGG 58.333 50.000 12.05 0.00 0.00 3.51
577 838 3.624900 CATTGGAAAGCGCTATGTGATG 58.375 45.455 12.05 9.43 0.00 3.07
578 839 2.033801 GCATTGGAAAGCGCTATGTGAT 59.966 45.455 12.05 0.00 0.00 3.06
579 840 1.401552 GCATTGGAAAGCGCTATGTGA 59.598 47.619 12.05 0.00 0.00 3.58
580 841 1.132834 TGCATTGGAAAGCGCTATGTG 59.867 47.619 12.05 5.56 0.00 3.21
581 842 1.462616 TGCATTGGAAAGCGCTATGT 58.537 45.000 12.05 0.00 0.00 2.29
582 843 2.565210 TTGCATTGGAAAGCGCTATG 57.435 45.000 12.05 11.94 0.00 2.23
583 844 3.591196 TTTTGCATTGGAAAGCGCTAT 57.409 38.095 12.05 0.00 0.00 2.97
584 845 3.056962 TCATTTTGCATTGGAAAGCGCTA 60.057 39.130 12.05 0.00 0.00 4.26
585 846 2.070783 CATTTTGCATTGGAAAGCGCT 58.929 42.857 2.64 2.64 0.00 5.92
586 847 2.067766 TCATTTTGCATTGGAAAGCGC 58.932 42.857 0.00 0.00 0.00 5.92
587 848 3.319755 ACTCATTTTGCATTGGAAAGCG 58.680 40.909 3.51 0.23 0.00 4.68
588 849 4.563061 AGACTCATTTTGCATTGGAAAGC 58.437 39.130 3.51 0.00 0.00 3.51
589 850 6.680810 TGTAGACTCATTTTGCATTGGAAAG 58.319 36.000 3.51 0.00 0.00 2.62
590 851 6.647334 TGTAGACTCATTTTGCATTGGAAA 57.353 33.333 0.00 0.00 0.00 3.13
591 852 6.489700 TCTTGTAGACTCATTTTGCATTGGAA 59.510 34.615 0.00 0.00 0.00 3.53
592 853 6.003326 TCTTGTAGACTCATTTTGCATTGGA 58.997 36.000 0.00 0.00 0.00 3.53
593 854 6.088824 GTCTTGTAGACTCATTTTGCATTGG 58.911 40.000 0.00 0.00 41.88 3.16
594 855 6.671190 TGTCTTGTAGACTCATTTTGCATTG 58.329 36.000 8.18 0.00 45.27 2.82
595 856 6.882610 TGTCTTGTAGACTCATTTTGCATT 57.117 33.333 8.18 0.00 45.27 3.56
596 857 6.882610 TTGTCTTGTAGACTCATTTTGCAT 57.117 33.333 8.18 0.00 45.27 3.96
597 858 6.882610 ATTGTCTTGTAGACTCATTTTGCA 57.117 33.333 8.18 0.00 45.27 4.08
598 859 9.846248 ATTTATTGTCTTGTAGACTCATTTTGC 57.154 29.630 8.18 0.00 45.27 3.68
603 864 9.725019 TGTTCATTTATTGTCTTGTAGACTCAT 57.275 29.630 8.18 3.68 45.27 2.90
604 865 9.725019 ATGTTCATTTATTGTCTTGTAGACTCA 57.275 29.630 8.18 0.00 45.27 3.41
605 866 9.979270 CATGTTCATTTATTGTCTTGTAGACTC 57.021 33.333 8.18 0.00 45.27 3.36
606 867 9.507329 ACATGTTCATTTATTGTCTTGTAGACT 57.493 29.630 8.18 0.00 45.27 3.24
607 868 9.546909 CACATGTTCATTTATTGTCTTGTAGAC 57.453 33.333 0.00 0.00 45.26 2.59
608 869 9.283768 ACACATGTTCATTTATTGTCTTGTAGA 57.716 29.630 0.00 0.00 0.00 2.59
634 895 9.826574 GGGAAGTGTCATATGTGTAGTAAAATA 57.173 33.333 1.90 0.00 0.00 1.40
635 896 8.325787 TGGGAAGTGTCATATGTGTAGTAAAAT 58.674 33.333 1.90 0.00 0.00 1.82
636 897 7.604927 GTGGGAAGTGTCATATGTGTAGTAAAA 59.395 37.037 1.90 0.00 0.00 1.52
637 898 7.038587 AGTGGGAAGTGTCATATGTGTAGTAAA 60.039 37.037 1.90 0.00 0.00 2.01
638 899 6.439375 AGTGGGAAGTGTCATATGTGTAGTAA 59.561 38.462 1.90 0.00 0.00 2.24
639 900 5.955959 AGTGGGAAGTGTCATATGTGTAGTA 59.044 40.000 1.90 0.00 0.00 1.82
640 901 4.777896 AGTGGGAAGTGTCATATGTGTAGT 59.222 41.667 1.90 0.00 0.00 2.73
641 902 5.344743 AGTGGGAAGTGTCATATGTGTAG 57.655 43.478 1.90 0.00 0.00 2.74
642 903 8.541899 TTATAGTGGGAAGTGTCATATGTGTA 57.458 34.615 1.90 0.00 0.00 2.90
643 904 5.957771 ATAGTGGGAAGTGTCATATGTGT 57.042 39.130 1.90 0.00 0.00 3.72
644 905 6.931281 CCTTATAGTGGGAAGTGTCATATGTG 59.069 42.308 1.90 0.00 0.00 3.21
645 906 7.067496 CCTTATAGTGGGAAGTGTCATATGT 57.933 40.000 1.90 0.00 0.00 2.29
659 920 8.937207 ACTCTATGTTACTACCCTTATAGTGG 57.063 38.462 0.00 0.00 36.09 4.00
665 926 9.547753 CGTTACTACTCTATGTTACTACCCTTA 57.452 37.037 0.00 0.00 0.00 2.69
666 927 8.049721 ACGTTACTACTCTATGTTACTACCCTT 58.950 37.037 0.00 0.00 0.00 3.95
667 928 7.569240 ACGTTACTACTCTATGTTACTACCCT 58.431 38.462 0.00 0.00 0.00 4.34
668 929 7.793927 ACGTTACTACTCTATGTTACTACCC 57.206 40.000 0.00 0.00 0.00 3.69
670 931 9.804547 GCATACGTTACTACTCTATGTTACTAC 57.195 37.037 0.00 0.00 0.00 2.73
671 932 9.546428 TGCATACGTTACTACTCTATGTTACTA 57.454 33.333 0.00 0.00 0.00 1.82
672 933 8.442632 TGCATACGTTACTACTCTATGTTACT 57.557 34.615 0.00 0.00 0.00 2.24
673 934 9.114965 CATGCATACGTTACTACTCTATGTTAC 57.885 37.037 0.00 0.00 0.00 2.50
674 935 8.843262 ACATGCATACGTTACTACTCTATGTTA 58.157 33.333 0.00 0.00 0.00 2.41
675 936 7.713750 ACATGCATACGTTACTACTCTATGTT 58.286 34.615 0.00 0.00 0.00 2.71
676 937 7.273320 ACATGCATACGTTACTACTCTATGT 57.727 36.000 0.00 0.00 0.00 2.29
677 938 9.114965 GTAACATGCATACGTTACTACTCTATG 57.885 37.037 23.15 2.51 42.62 2.23
687 948 9.859427 ACTTAAAGTAGTAACATGCATACGTTA 57.141 29.630 0.00 1.86 0.00 3.18
688 949 8.767478 ACTTAAAGTAGTAACATGCATACGTT 57.233 30.769 0.00 2.97 0.00 3.99
689 950 8.767478 AACTTAAAGTAGTAACATGCATACGT 57.233 30.769 0.00 0.00 0.00 3.57
693 954 9.379791 GGAGTAACTTAAAGTAGTAACATGCAT 57.620 33.333 0.00 0.00 0.00 3.96
694 955 7.820872 GGGAGTAACTTAAAGTAGTAACATGCA 59.179 37.037 0.00 0.00 0.00 3.96
695 956 7.279536 GGGGAGTAACTTAAAGTAGTAACATGC 59.720 40.741 0.00 0.00 0.00 4.06
696 957 8.316214 TGGGGAGTAACTTAAAGTAGTAACATG 58.684 37.037 0.00 0.00 0.00 3.21
697 958 8.316946 GTGGGGAGTAACTTAAAGTAGTAACAT 58.683 37.037 0.00 0.00 0.00 2.71
698 959 7.510343 AGTGGGGAGTAACTTAAAGTAGTAACA 59.490 37.037 0.00 0.00 0.00 2.41
699 960 7.901029 AGTGGGGAGTAACTTAAAGTAGTAAC 58.099 38.462 0.00 0.00 0.00 2.50
700 961 9.774071 ATAGTGGGGAGTAACTTAAAGTAGTAA 57.226 33.333 0.00 0.00 0.00 2.24
701 962 9.193806 CATAGTGGGGAGTAACTTAAAGTAGTA 57.806 37.037 0.00 0.00 0.00 1.82
702 963 7.897565 TCATAGTGGGGAGTAACTTAAAGTAGT 59.102 37.037 0.00 0.00 0.00 2.73
703 964 8.196103 GTCATAGTGGGGAGTAACTTAAAGTAG 58.804 40.741 0.00 0.00 0.00 2.57
704 965 7.124750 GGTCATAGTGGGGAGTAACTTAAAGTA 59.875 40.741 0.00 0.00 0.00 2.24
705 966 6.070366 GGTCATAGTGGGGAGTAACTTAAAGT 60.070 42.308 0.00 0.00 0.00 2.66
706 967 6.070424 TGGTCATAGTGGGGAGTAACTTAAAG 60.070 42.308 0.00 0.00 0.00 1.85
707 968 5.786457 TGGTCATAGTGGGGAGTAACTTAAA 59.214 40.000 0.00 0.00 0.00 1.52
708 969 5.343715 TGGTCATAGTGGGGAGTAACTTAA 58.656 41.667 0.00 0.00 0.00 1.85
709 970 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
710 971 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
711 972 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
712 973 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
713 974 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
714 975 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
715 976 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
716 977 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
717 978 0.639943 TAGGCTGGTCATAGTGGGGA 59.360 55.000 0.00 0.00 0.00 4.81
718 979 1.507140 TTAGGCTGGTCATAGTGGGG 58.493 55.000 0.00 0.00 0.00 4.96
719 980 2.238646 TGTTTAGGCTGGTCATAGTGGG 59.761 50.000 0.00 0.00 0.00 4.61
720 981 3.055094 ACTGTTTAGGCTGGTCATAGTGG 60.055 47.826 0.00 0.00 0.00 4.00
721 982 4.207891 ACTGTTTAGGCTGGTCATAGTG 57.792 45.455 0.00 0.00 0.00 2.74
722 983 5.127356 GTCTACTGTTTAGGCTGGTCATAGT 59.873 44.000 0.00 0.00 0.00 2.12
723 984 5.593010 GTCTACTGTTTAGGCTGGTCATAG 58.407 45.833 0.00 0.00 0.00 2.23
724 985 4.097437 CGTCTACTGTTTAGGCTGGTCATA 59.903 45.833 0.00 0.00 0.00 2.15
725 986 3.119101 CGTCTACTGTTTAGGCTGGTCAT 60.119 47.826 0.00 0.00 0.00 3.06
726 987 2.230508 CGTCTACTGTTTAGGCTGGTCA 59.769 50.000 0.00 0.00 0.00 4.02
727 988 2.490903 TCGTCTACTGTTTAGGCTGGTC 59.509 50.000 0.00 0.00 0.00 4.02
728 989 2.522185 TCGTCTACTGTTTAGGCTGGT 58.478 47.619 0.00 0.00 0.00 4.00
729 990 3.192844 TCTTCGTCTACTGTTTAGGCTGG 59.807 47.826 0.00 0.00 0.00 4.85
730 991 4.436242 TCTTCGTCTACTGTTTAGGCTG 57.564 45.455 0.00 0.00 0.00 4.85
731 992 5.464030 TTTCTTCGTCTACTGTTTAGGCT 57.536 39.130 0.00 0.00 0.00 4.58
732 993 6.534934 CATTTTCTTCGTCTACTGTTTAGGC 58.465 40.000 0.00 0.00 0.00 3.93
733 994 6.147164 TGCATTTTCTTCGTCTACTGTTTAGG 59.853 38.462 0.00 0.00 0.00 2.69
734 995 7.117241 TGCATTTTCTTCGTCTACTGTTTAG 57.883 36.000 0.00 0.00 0.00 1.85
735 996 7.485418 TTGCATTTTCTTCGTCTACTGTTTA 57.515 32.000 0.00 0.00 0.00 2.01
736 997 6.371809 TTGCATTTTCTTCGTCTACTGTTT 57.628 33.333 0.00 0.00 0.00 2.83
737 998 6.560253 ATTGCATTTTCTTCGTCTACTGTT 57.440 33.333 0.00 0.00 0.00 3.16
738 999 6.373779 CAATTGCATTTTCTTCGTCTACTGT 58.626 36.000 0.00 0.00 0.00 3.55
739 1000 5.796935 CCAATTGCATTTTCTTCGTCTACTG 59.203 40.000 0.00 0.00 0.00 2.74
740 1001 5.473504 ACCAATTGCATTTTCTTCGTCTACT 59.526 36.000 0.00 0.00 0.00 2.57
741 1002 5.699839 ACCAATTGCATTTTCTTCGTCTAC 58.300 37.500 0.00 0.00 0.00 2.59
742 1003 5.957842 ACCAATTGCATTTTCTTCGTCTA 57.042 34.783 0.00 0.00 0.00 2.59
743 1004 4.853924 ACCAATTGCATTTTCTTCGTCT 57.146 36.364 0.00 0.00 0.00 4.18
744 1005 4.553429 CGTACCAATTGCATTTTCTTCGTC 59.447 41.667 0.00 0.00 0.00 4.20
745 1006 4.214545 TCGTACCAATTGCATTTTCTTCGT 59.785 37.500 0.00 0.00 0.00 3.85
746 1007 4.717991 TCGTACCAATTGCATTTTCTTCG 58.282 39.130 0.00 0.00 0.00 3.79
831 1092 5.858581 GCGATTAAGGACATTAATGCATTCC 59.141 40.000 16.86 10.88 42.84 3.01
856 1131 6.589907 GGAACCGTTTCAATGCTGAATTAATT 59.410 34.615 0.00 0.00 41.22 1.40
912 1189 0.592637 CACACGAGATGGCAAAAGCA 59.407 50.000 0.00 0.00 0.00 3.91
929 1207 5.143125 CTCGATCTGAGTTGTGAGGAACAC 61.143 50.000 6.45 0.00 43.30 3.32
976 1258 3.865446 TCAGCTAGATGTGGTGTTGATG 58.135 45.455 8.04 0.00 34.86 3.07
1093 1389 5.072040 AGGTAAAGCATATGGTTGTTTGC 57.928 39.130 20.22 8.81 35.72 3.68
1114 1426 8.533569 AAAACCCCAATAGTACCATGAATAAG 57.466 34.615 0.00 0.00 0.00 1.73
1211 1526 2.877975 GCAACCTGCCTGATCACAT 58.122 52.632 0.00 0.00 37.42 3.21
1393 1714 3.244491 CCTATCCCCATCTCAGAAAGCTG 60.244 52.174 0.00 0.00 43.67 4.24
1407 1728 4.284746 CAGAGAACCAACTATCCTATCCCC 59.715 50.000 0.00 0.00 0.00 4.81
1450 1778 7.600065 AGTATATCACAACCGATACACCATAC 58.400 38.462 0.00 0.00 27.44 2.39
1543 1874 3.451141 AATTTTTCTTCCGCTGCAACA 57.549 38.095 0.00 0.00 0.00 3.33
1607 1938 1.400142 CTTTTTCACGTGCACACAGGA 59.600 47.619 18.64 5.15 35.62 3.86
1644 1975 0.606944 ACTTAATGCCCGGCGAAACA 60.607 50.000 9.30 3.27 0.00 2.83
1659 1990 6.322969 TGGAGAAGTAGCGGATTGATTACTTA 59.677 38.462 0.00 0.00 36.70 2.24
1680 2011 1.671261 GCCCTCGATCGATGAATGGAG 60.671 57.143 19.78 10.59 32.90 3.86
1690 2021 0.385751 TTCTTAGCTGCCCTCGATCG 59.614 55.000 9.36 9.36 0.00 3.69
1763 2094 7.397192 CCTTAAAATCTCCTCAATGGAAAGGAA 59.603 37.037 5.21 0.00 43.26 3.36
2047 2384 9.804547 TTGTTTTTAGATAAATTTCGCAATTGC 57.195 25.926 20.76 20.76 32.57 3.56
2092 2432 5.813513 AGAAAATGGCCATTCAAGAAGTT 57.186 34.783 30.74 19.01 0.00 2.66
2094 2434 7.161773 TCTAAGAAAATGGCCATTCAAGAAG 57.838 36.000 30.74 22.84 0.00 2.85
2097 2437 8.255905 AGATTTCTAAGAAAATGGCCATTCAAG 58.744 33.333 30.74 20.97 0.00 3.02
2100 2440 7.775120 TGAGATTTCTAAGAAAATGGCCATTC 58.225 34.615 30.74 20.35 0.00 2.67
2104 2444 7.378181 TGTTTGAGATTTCTAAGAAAATGGCC 58.622 34.615 0.00 0.00 0.00 5.36
2351 2702 7.408910 CCCATTTCTCATTGTTTTTGTGTTTC 58.591 34.615 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.