Multiple sequence alignment - TraesCS3B01G449900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G449900 chr3B 100.000 3485 0 0 1 3485 690412754 690416238 0.000000e+00 6436
1 TraesCS3B01G449900 chr3B 94.144 1998 98 2 981 2977 642220091 642218112 0.000000e+00 3024
2 TraesCS3B01G449900 chr3B 93.738 1613 69 9 1857 3465 689010395 689008811 0.000000e+00 2390
3 TraesCS3B01G449900 chr3B 95.319 940 38 6 925 1862 689017626 689016691 0.000000e+00 1487
4 TraesCS3B01G449900 chrUn 94.657 1853 85 9 1634 3485 354963302 354965141 0.000000e+00 2861
5 TraesCS3B01G449900 chrUn 94.184 1427 72 9 916 2341 400744908 400743492 0.000000e+00 2165
6 TraesCS3B01G449900 chrUn 95.245 715 26 6 916 1630 459185737 459185031 0.000000e+00 1125
7 TraesCS3B01G449900 chr3D 93.645 1778 98 10 908 2679 523551217 523552985 0.000000e+00 2643
8 TraesCS3B01G449900 chr3D 93.869 995 59 2 910 1904 523330150 523331142 0.000000e+00 1498
9 TraesCS3B01G449900 chr3D 95.304 873 41 0 2105 2977 523331142 523332014 0.000000e+00 1386
10 TraesCS3B01G449900 chr7B 88.076 738 64 7 80 817 594060573 594061286 0.000000e+00 854
11 TraesCS3B01G449900 chr7D 92.032 502 37 3 115 615 549764672 549765171 0.000000e+00 702
12 TraesCS3B01G449900 chr7D 91.477 176 14 1 642 817 549767254 549767428 1.250000e-59 241
13 TraesCS3B01G449900 chr7D 95.455 110 4 1 80 188 549764564 549764673 1.290000e-39 174
14 TraesCS3B01G449900 chr1B 96.685 362 12 0 1119 1480 375808453 375808092 1.380000e-168 603
15 TraesCS3B01G449900 chr3A 89.137 313 12 4 946 1252 658295381 658295677 1.530000e-98 370
16 TraesCS3B01G449900 chr6B 94.118 102 6 0 506 607 463307958 463308059 4.660000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G449900 chr3B 690412754 690416238 3484 False 6436.000000 6436 100.0000 1 3485 1 chr3B.!!$F1 3484
1 TraesCS3B01G449900 chr3B 642218112 642220091 1979 True 3024.000000 3024 94.1440 981 2977 1 chr3B.!!$R1 1996
2 TraesCS3B01G449900 chr3B 689008811 689010395 1584 True 2390.000000 2390 93.7380 1857 3465 1 chr3B.!!$R2 1608
3 TraesCS3B01G449900 chr3B 689016691 689017626 935 True 1487.000000 1487 95.3190 925 1862 1 chr3B.!!$R3 937
4 TraesCS3B01G449900 chrUn 354963302 354965141 1839 False 2861.000000 2861 94.6570 1634 3485 1 chrUn.!!$F1 1851
5 TraesCS3B01G449900 chrUn 400743492 400744908 1416 True 2165.000000 2165 94.1840 916 2341 1 chrUn.!!$R1 1425
6 TraesCS3B01G449900 chrUn 459185031 459185737 706 True 1125.000000 1125 95.2450 916 1630 1 chrUn.!!$R2 714
7 TraesCS3B01G449900 chr3D 523551217 523552985 1768 False 2643.000000 2643 93.6450 908 2679 1 chr3D.!!$F1 1771
8 TraesCS3B01G449900 chr3D 523330150 523332014 1864 False 1442.000000 1498 94.5865 910 2977 2 chr3D.!!$F2 2067
9 TraesCS3B01G449900 chr7B 594060573 594061286 713 False 854.000000 854 88.0760 80 817 1 chr7B.!!$F1 737
10 TraesCS3B01G449900 chr7D 549764564 549767428 2864 False 372.333333 702 92.9880 80 817 3 chr7D.!!$F1 737

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
563 637 0.093026 CCGTCAACGTTGATCTTCGC 59.907 55.0 31.81 17.53 39.73 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2523 3892 0.680618 TGCTTCCATGTGGCCAAAAG 59.319 50.0 7.24 0.0 34.44 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.787532 TTTTGAAGTGAAAATGTACTTTCAGAG 57.212 29.630 9.80 0.00 44.00 3.35
42 43 7.496529 TGAAGTGAAAATGTACTTTCAGAGG 57.503 36.000 9.80 0.00 44.00 3.69
43 44 6.486657 TGAAGTGAAAATGTACTTTCAGAGGG 59.513 38.462 9.80 0.00 44.00 4.30
44 45 6.187727 AGTGAAAATGTACTTTCAGAGGGA 57.812 37.500 9.80 0.00 44.00 4.20
45 46 6.601332 AGTGAAAATGTACTTTCAGAGGGAA 58.399 36.000 9.80 0.00 44.00 3.97
46 47 7.060421 AGTGAAAATGTACTTTCAGAGGGAAA 58.940 34.615 9.80 0.00 44.00 3.13
47 48 7.559897 AGTGAAAATGTACTTTCAGAGGGAAAA 59.440 33.333 9.80 0.00 44.00 2.29
48 49 7.648112 GTGAAAATGTACTTTCAGAGGGAAAAC 59.352 37.037 9.80 0.00 44.00 2.43
49 50 7.559897 TGAAAATGTACTTTCAGAGGGAAAACT 59.440 33.333 6.26 0.00 44.52 2.66
50 51 7.898014 AAATGTACTTTCAGAGGGAAAACTT 57.102 32.000 0.00 0.00 44.52 2.66
51 52 6.884280 ATGTACTTTCAGAGGGAAAACTTG 57.116 37.500 0.00 0.00 44.52 3.16
52 53 5.130350 TGTACTTTCAGAGGGAAAACTTGG 58.870 41.667 0.00 0.00 44.52 3.61
53 54 4.519906 ACTTTCAGAGGGAAAACTTGGA 57.480 40.909 0.00 0.00 44.52 3.53
54 55 4.464947 ACTTTCAGAGGGAAAACTTGGAG 58.535 43.478 0.00 0.00 44.52 3.86
55 56 4.079730 ACTTTCAGAGGGAAAACTTGGAGT 60.080 41.667 0.00 0.00 44.52 3.85
56 57 3.771577 TCAGAGGGAAAACTTGGAGTC 57.228 47.619 0.00 0.00 0.00 3.36
57 58 2.037251 TCAGAGGGAAAACTTGGAGTCG 59.963 50.000 0.00 0.00 0.00 4.18
58 59 2.037251 CAGAGGGAAAACTTGGAGTCGA 59.963 50.000 0.00 0.00 0.00 4.20
59 60 2.300437 AGAGGGAAAACTTGGAGTCGAG 59.700 50.000 0.00 0.00 0.00 4.04
60 61 2.037381 GAGGGAAAACTTGGAGTCGAGT 59.963 50.000 0.00 0.00 39.23 4.18
61 62 2.438392 AGGGAAAACTTGGAGTCGAGTT 59.562 45.455 0.00 5.07 46.61 3.01
132 205 8.525290 AATCTCTGAAATAATGTTTACAGGGG 57.475 34.615 0.00 0.00 0.00 4.79
207 280 0.936297 CGAAGTGTGCTTTGCAAGGC 60.936 55.000 25.28 25.28 41.47 4.35
225 298 2.262572 GCGATGTGCCTTAAAGTTGG 57.737 50.000 0.00 0.00 37.76 3.77
275 348 5.116180 CAACTAGCCATAGACAATTTCCGA 58.884 41.667 0.00 0.00 32.93 4.55
279 352 2.545946 GCCATAGACAATTTCCGAGCTC 59.454 50.000 2.73 2.73 0.00 4.09
281 354 3.806521 CCATAGACAATTTCCGAGCTCTG 59.193 47.826 12.85 5.31 0.00 3.35
310 383 0.550914 ATGATTGCACCATACGGGGT 59.449 50.000 0.00 0.00 43.56 4.95
323 396 1.821258 CGGGGTACTAGTTCCCTGC 59.179 63.158 30.27 17.49 42.40 4.85
348 421 5.705441 TCAATGTCCTTGATAACCACTTGAC 59.295 40.000 0.00 0.00 38.97 3.18
360 433 0.798776 CACTTGACAATCTGACGCCC 59.201 55.000 0.00 0.00 0.00 6.13
445 518 4.858850 TCCATGCTTGTTGGATCAGTTAT 58.141 39.130 0.00 0.00 38.35 1.89
450 523 4.168760 GCTTGTTGGATCAGTTATGTTGC 58.831 43.478 0.00 0.00 0.00 4.17
491 565 4.753233 CTCCCATATATTCTCCAAGCTCG 58.247 47.826 0.00 0.00 0.00 5.03
496 570 6.073003 CCCATATATTCTCCAAGCTCGTTTTC 60.073 42.308 0.00 0.00 0.00 2.29
504 578 1.869767 CAAGCTCGTTTTCTGCAGACT 59.130 47.619 18.03 5.32 0.00 3.24
540 614 4.164221 ACCACCATACCATCTCGAGAAAAT 59.836 41.667 20.91 9.93 0.00 1.82
563 637 0.093026 CCGTCAACGTTGATCTTCGC 59.907 55.000 31.81 17.53 39.73 4.70
564 638 0.781787 CGTCAACGTTGATCTTCGCA 59.218 50.000 31.81 6.10 39.73 5.10
568 642 1.464608 CAACGTTGATCTTCGCATGGT 59.535 47.619 23.90 0.00 0.00 3.55
569 643 1.808411 ACGTTGATCTTCGCATGGTT 58.192 45.000 9.30 0.00 0.00 3.67
571 645 2.095768 ACGTTGATCTTCGCATGGTTTG 60.096 45.455 9.30 0.00 0.00 2.93
572 646 2.159430 CGTTGATCTTCGCATGGTTTGA 59.841 45.455 0.00 0.00 0.00 2.69
574 648 1.731709 TGATCTTCGCATGGTTTGACG 59.268 47.619 0.00 0.00 0.00 4.35
610 684 1.009389 GCTGCTCGTAACACTCGCTT 61.009 55.000 0.00 0.00 0.00 4.68
615 689 3.189080 TGCTCGTAACACTCGCTTTAGTA 59.811 43.478 0.00 0.00 0.00 1.82
617 691 4.671250 GCTCGTAACACTCGCTTTAGTAGT 60.671 45.833 0.00 0.00 0.00 2.73
618 692 5.362556 TCGTAACACTCGCTTTAGTAGTT 57.637 39.130 0.00 0.00 0.00 2.24
619 693 5.149273 TCGTAACACTCGCTTTAGTAGTTG 58.851 41.667 0.00 0.00 0.00 3.16
620 694 4.201466 CGTAACACTCGCTTTAGTAGTTGC 60.201 45.833 0.00 0.00 0.00 4.17
621 695 2.685100 ACACTCGCTTTAGTAGTTGCC 58.315 47.619 0.00 0.00 0.00 4.52
622 696 1.654105 CACTCGCTTTAGTAGTTGCCG 59.346 52.381 0.00 0.00 0.00 5.69
623 697 0.645868 CTCGCTTTAGTAGTTGCCGC 59.354 55.000 0.00 0.00 0.00 6.53
624 698 0.245539 TCGCTTTAGTAGTTGCCGCT 59.754 50.000 0.00 0.00 0.00 5.52
625 699 0.370273 CGCTTTAGTAGTTGCCGCTG 59.630 55.000 0.00 0.00 0.00 5.18
626 700 1.439679 GCTTTAGTAGTTGCCGCTGT 58.560 50.000 0.00 0.00 0.00 4.40
627 701 2.613691 GCTTTAGTAGTTGCCGCTGTA 58.386 47.619 0.00 0.00 0.00 2.74
628 702 2.603560 GCTTTAGTAGTTGCCGCTGTAG 59.396 50.000 0.00 0.00 0.00 2.74
629 703 3.846360 CTTTAGTAGTTGCCGCTGTAGT 58.154 45.455 0.00 0.00 0.00 2.73
630 704 3.498927 TTAGTAGTTGCCGCTGTAGTC 57.501 47.619 0.00 0.00 0.00 2.59
631 705 1.254026 AGTAGTTGCCGCTGTAGTCA 58.746 50.000 0.00 0.00 0.00 3.41
675 749 6.463995 CCTAGCTCTGATAGGTATGAATCC 57.536 45.833 0.00 0.00 37.54 3.01
676 750 5.954752 CCTAGCTCTGATAGGTATGAATCCA 59.045 44.000 0.00 0.00 37.54 3.41
678 752 5.150715 AGCTCTGATAGGTATGAATCCACA 58.849 41.667 0.00 0.00 32.98 4.17
679 753 5.604231 AGCTCTGATAGGTATGAATCCACAA 59.396 40.000 0.00 0.00 32.98 3.33
680 754 6.100279 AGCTCTGATAGGTATGAATCCACAAA 59.900 38.462 0.00 0.00 32.98 2.83
681 755 6.426328 GCTCTGATAGGTATGAATCCACAAAG 59.574 42.308 0.00 0.00 0.00 2.77
682 756 6.291377 TCTGATAGGTATGAATCCACAAAGC 58.709 40.000 0.00 0.00 0.00 3.51
683 757 6.000246 TGATAGGTATGAATCCACAAAGCA 58.000 37.500 0.00 0.00 0.00 3.91
684 758 6.422333 TGATAGGTATGAATCCACAAAGCAA 58.578 36.000 0.00 0.00 0.00 3.91
685 759 7.062322 TGATAGGTATGAATCCACAAAGCAAT 58.938 34.615 0.00 0.00 0.00 3.56
686 760 5.587388 AGGTATGAATCCACAAAGCAATG 57.413 39.130 0.00 0.00 0.00 2.82
687 761 5.263599 AGGTATGAATCCACAAAGCAATGA 58.736 37.500 0.00 0.00 0.00 2.57
688 762 5.716228 AGGTATGAATCCACAAAGCAATGAA 59.284 36.000 0.00 0.00 0.00 2.57
689 763 6.381994 AGGTATGAATCCACAAAGCAATGAAT 59.618 34.615 0.00 0.00 0.00 2.57
690 764 7.560991 AGGTATGAATCCACAAAGCAATGAATA 59.439 33.333 0.00 0.00 0.00 1.75
691 765 8.362639 GGTATGAATCCACAAAGCAATGAATAT 58.637 33.333 0.00 0.00 0.00 1.28
692 766 9.188588 GTATGAATCCACAAAGCAATGAATATG 57.811 33.333 0.00 0.00 0.00 1.78
693 767 7.172868 TGAATCCACAAAGCAATGAATATGT 57.827 32.000 0.00 0.00 0.00 2.29
694 768 7.613585 TGAATCCACAAAGCAATGAATATGTT 58.386 30.769 0.00 0.00 0.00 2.71
695 769 7.760794 TGAATCCACAAAGCAATGAATATGTTC 59.239 33.333 0.00 0.00 34.85 3.18
697 771 6.623486 TCCACAAAGCAATGAATATGTTCAG 58.377 36.000 10.79 0.00 46.75 3.02
698 772 5.808540 CCACAAAGCAATGAATATGTTCAGG 59.191 40.000 10.79 6.65 46.75 3.86
699 773 5.808540 CACAAAGCAATGAATATGTTCAGGG 59.191 40.000 10.79 6.33 46.75 4.45
700 774 4.660789 AAGCAATGAATATGTTCAGGGC 57.339 40.909 17.56 17.56 46.75 5.19
701 775 3.907221 AGCAATGAATATGTTCAGGGCT 58.093 40.909 20.44 20.44 46.75 5.19
702 776 3.887716 AGCAATGAATATGTTCAGGGCTC 59.112 43.478 20.44 6.24 46.21 4.70
703 777 3.887716 GCAATGAATATGTTCAGGGCTCT 59.112 43.478 17.82 0.00 46.75 4.09
704 778 4.261489 GCAATGAATATGTTCAGGGCTCTG 60.261 45.833 7.48 7.48 46.75 3.35
705 779 3.565764 TGAATATGTTCAGGGCTCTGG 57.434 47.619 15.13 0.00 39.36 3.86
706 780 3.114606 TGAATATGTTCAGGGCTCTGGA 58.885 45.455 15.13 0.15 39.36 3.86
707 781 3.523157 TGAATATGTTCAGGGCTCTGGAA 59.477 43.478 15.13 3.96 39.36 3.53
708 782 4.166725 TGAATATGTTCAGGGCTCTGGAAT 59.833 41.667 15.13 7.73 39.36 3.01
709 783 5.369404 TGAATATGTTCAGGGCTCTGGAATA 59.631 40.000 15.13 9.74 39.36 1.75
710 784 6.044754 TGAATATGTTCAGGGCTCTGGAATAT 59.955 38.462 15.13 11.56 39.36 1.28
711 785 7.237471 TGAATATGTTCAGGGCTCTGGAATATA 59.763 37.037 15.13 14.06 39.36 0.86
712 786 4.689612 TGTTCAGGGCTCTGGAATATAC 57.310 45.455 15.13 3.61 41.23 1.47
713 787 4.298626 TGTTCAGGGCTCTGGAATATACT 58.701 43.478 15.13 0.00 41.23 2.12
714 788 4.721776 TGTTCAGGGCTCTGGAATATACTT 59.278 41.667 15.13 0.00 41.23 2.24
715 789 5.191722 TGTTCAGGGCTCTGGAATATACTTT 59.808 40.000 15.13 0.00 41.23 2.66
716 790 5.552870 TCAGGGCTCTGGAATATACTTTC 57.447 43.478 15.13 0.00 41.23 2.62
717 791 4.968719 TCAGGGCTCTGGAATATACTTTCA 59.031 41.667 15.13 0.00 41.23 2.69
718 792 5.608437 TCAGGGCTCTGGAATATACTTTCAT 59.392 40.000 15.13 0.00 41.23 2.57
719 793 5.704515 CAGGGCTCTGGAATATACTTTCATG 59.295 44.000 5.38 0.00 37.36 3.07
720 794 5.608437 AGGGCTCTGGAATATACTTTCATGA 59.392 40.000 0.00 0.00 0.00 3.07
721 795 6.101734 AGGGCTCTGGAATATACTTTCATGAA 59.898 38.462 3.38 3.38 0.00 2.57
722 796 6.944862 GGGCTCTGGAATATACTTTCATGAAT 59.055 38.462 9.40 0.00 0.00 2.57
723 797 7.449704 GGGCTCTGGAATATACTTTCATGAATT 59.550 37.037 9.40 0.00 0.00 2.17
724 798 8.295288 GGCTCTGGAATATACTTTCATGAATTG 58.705 37.037 9.40 8.09 0.00 2.32
725 799 7.806960 GCTCTGGAATATACTTTCATGAATTGC 59.193 37.037 9.40 5.43 0.00 3.56
726 800 8.169977 TCTGGAATATACTTTCATGAATTGCC 57.830 34.615 9.40 4.39 0.00 4.52
727 801 8.000709 TCTGGAATATACTTTCATGAATTGCCT 58.999 33.333 9.40 0.00 0.00 4.75
728 802 8.537728 TGGAATATACTTTCATGAATTGCCTT 57.462 30.769 9.40 0.00 0.00 4.35
729 803 8.415553 TGGAATATACTTTCATGAATTGCCTTG 58.584 33.333 9.40 0.00 0.00 3.61
730 804 7.383300 GGAATATACTTTCATGAATTGCCTTGC 59.617 37.037 9.40 1.61 0.00 4.01
731 805 2.950433 ACTTTCATGAATTGCCTTGCG 58.050 42.857 9.40 0.00 0.00 4.85
732 806 2.297033 ACTTTCATGAATTGCCTTGCGT 59.703 40.909 9.40 0.00 0.00 5.24
733 807 2.634982 TTCATGAATTGCCTTGCGTC 57.365 45.000 3.38 0.00 0.00 5.19
734 808 1.825090 TCATGAATTGCCTTGCGTCT 58.175 45.000 0.00 0.00 0.00 4.18
735 809 1.739466 TCATGAATTGCCTTGCGTCTC 59.261 47.619 0.00 0.00 0.00 3.36
736 810 0.729116 ATGAATTGCCTTGCGTCTCG 59.271 50.000 0.00 0.00 0.00 4.04
747 821 4.391539 CGTCTCGCTGACCAGATG 57.608 61.111 0.47 0.00 42.49 2.90
748 822 1.226802 CGTCTCGCTGACCAGATGG 60.227 63.158 0.47 0.00 42.49 3.51
749 823 1.520342 GTCTCGCTGACCAGATGGC 60.520 63.158 0.00 0.00 39.69 4.40
750 824 2.202987 CTCGCTGACCAGATGGCC 60.203 66.667 0.00 0.00 39.32 5.36
751 825 3.746949 CTCGCTGACCAGATGGCCC 62.747 68.421 0.00 0.00 39.32 5.80
752 826 4.100084 CGCTGACCAGATGGCCCA 62.100 66.667 0.00 0.00 39.32 5.36
753 827 2.599597 GCTGACCAGATGGCCCAT 59.400 61.111 0.00 0.00 39.32 4.00
754 828 1.839191 GCTGACCAGATGGCCCATA 59.161 57.895 0.00 0.00 39.32 2.74
755 829 0.250640 GCTGACCAGATGGCCCATAG 60.251 60.000 0.00 0.00 39.32 2.23
756 830 0.250640 CTGACCAGATGGCCCATAGC 60.251 60.000 0.00 0.00 39.32 2.97
757 831 1.302033 GACCAGATGGCCCATAGCG 60.302 63.158 0.00 0.00 45.17 4.26
758 832 2.044806 GACCAGATGGCCCATAGCGT 62.045 60.000 0.00 0.00 45.17 5.07
759 833 1.302033 CCAGATGGCCCATAGCGTC 60.302 63.158 0.00 0.00 45.17 5.19
760 834 1.447217 CAGATGGCCCATAGCGTCA 59.553 57.895 0.00 0.00 45.17 4.35
761 835 0.882042 CAGATGGCCCATAGCGTCAC 60.882 60.000 0.00 0.00 45.17 3.67
762 836 1.050988 AGATGGCCCATAGCGTCACT 61.051 55.000 0.00 0.00 45.17 3.41
763 837 0.679505 GATGGCCCATAGCGTCACTA 59.320 55.000 0.00 0.00 45.17 2.74
764 838 1.276421 GATGGCCCATAGCGTCACTAT 59.724 52.381 0.00 0.00 45.17 2.12
765 839 0.679505 TGGCCCATAGCGTCACTATC 59.320 55.000 0.00 0.00 45.17 2.08
766 840 0.679505 GGCCCATAGCGTCACTATCA 59.320 55.000 0.00 0.00 45.17 2.15
767 841 1.276421 GGCCCATAGCGTCACTATCAT 59.724 52.381 0.00 0.00 45.17 2.45
768 842 2.611518 GCCCATAGCGTCACTATCATC 58.388 52.381 0.00 0.00 39.71 2.92
769 843 2.029020 GCCCATAGCGTCACTATCATCA 60.029 50.000 0.00 0.00 39.71 3.07
770 844 3.368843 GCCCATAGCGTCACTATCATCAT 60.369 47.826 0.00 0.00 39.71 2.45
771 845 4.825422 CCCATAGCGTCACTATCATCATT 58.175 43.478 0.00 0.00 39.71 2.57
772 846 4.628766 CCCATAGCGTCACTATCATCATTG 59.371 45.833 0.00 0.00 39.71 2.82
773 847 5.233225 CCATAGCGTCACTATCATCATTGT 58.767 41.667 0.00 0.00 39.71 2.71
774 848 5.119743 CCATAGCGTCACTATCATCATTGTG 59.880 44.000 0.00 0.00 39.71 3.33
775 849 4.391405 AGCGTCACTATCATCATTGTGA 57.609 40.909 0.00 0.00 40.94 3.58
776 850 4.758688 AGCGTCACTATCATCATTGTGAA 58.241 39.130 0.00 0.00 43.55 3.18
777 851 5.363101 AGCGTCACTATCATCATTGTGAAT 58.637 37.500 0.00 0.00 43.55 2.57
778 852 5.819379 AGCGTCACTATCATCATTGTGAATT 59.181 36.000 0.00 0.00 43.55 2.17
779 853 6.018425 AGCGTCACTATCATCATTGTGAATTC 60.018 38.462 0.00 0.00 43.55 2.17
780 854 6.653183 CGTCACTATCATCATTGTGAATTCC 58.347 40.000 2.27 0.00 43.55 3.01
781 855 6.481313 CGTCACTATCATCATTGTGAATTCCT 59.519 38.462 2.27 0.00 43.55 3.36
782 856 7.307042 CGTCACTATCATCATTGTGAATTCCTC 60.307 40.741 2.27 0.00 43.55 3.71
783 857 7.714377 GTCACTATCATCATTGTGAATTCCTCT 59.286 37.037 2.27 0.00 43.55 3.69
784 858 8.270030 TCACTATCATCATTGTGAATTCCTCTT 58.730 33.333 2.27 0.00 40.47 2.85
785 859 8.343366 CACTATCATCATTGTGAATTCCTCTTG 58.657 37.037 2.27 0.00 37.81 3.02
786 860 8.270030 ACTATCATCATTGTGAATTCCTCTTGA 58.730 33.333 2.27 2.17 0.00 3.02
787 861 6.997239 TCATCATTGTGAATTCCTCTTGAG 57.003 37.500 2.27 0.00 0.00 3.02
788 862 6.714278 TCATCATTGTGAATTCCTCTTGAGA 58.286 36.000 2.27 0.00 0.00 3.27
789 863 7.344134 TCATCATTGTGAATTCCTCTTGAGAT 58.656 34.615 2.27 0.00 0.00 2.75
790 864 8.488668 TCATCATTGTGAATTCCTCTTGAGATA 58.511 33.333 2.27 0.00 0.00 1.98
791 865 8.775527 CATCATTGTGAATTCCTCTTGAGATAG 58.224 37.037 2.27 0.00 0.00 2.08
792 866 7.855375 TCATTGTGAATTCCTCTTGAGATAGT 58.145 34.615 2.27 0.00 0.00 2.12
793 867 7.767659 TCATTGTGAATTCCTCTTGAGATAGTG 59.232 37.037 2.27 0.00 0.00 2.74
794 868 6.611613 TGTGAATTCCTCTTGAGATAGTGT 57.388 37.500 2.27 0.00 0.00 3.55
795 869 7.718334 TGTGAATTCCTCTTGAGATAGTGTA 57.282 36.000 2.27 0.00 0.00 2.90
796 870 8.311395 TGTGAATTCCTCTTGAGATAGTGTAT 57.689 34.615 2.27 0.00 0.00 2.29
797 871 9.421399 TGTGAATTCCTCTTGAGATAGTGTATA 57.579 33.333 2.27 0.00 0.00 1.47
798 872 9.906660 GTGAATTCCTCTTGAGATAGTGTATAG 57.093 37.037 2.27 0.00 0.00 1.31
799 873 9.647918 TGAATTCCTCTTGAGATAGTGTATAGT 57.352 33.333 2.27 0.00 0.00 2.12
800 874 9.906660 GAATTCCTCTTGAGATAGTGTATAGTG 57.093 37.037 0.00 0.00 0.00 2.74
801 875 6.885952 TCCTCTTGAGATAGTGTATAGTGC 57.114 41.667 0.00 0.00 0.00 4.40
802 876 6.365520 TCCTCTTGAGATAGTGTATAGTGCA 58.634 40.000 0.00 0.00 0.00 4.57
803 877 7.007116 TCCTCTTGAGATAGTGTATAGTGCAT 58.993 38.462 0.00 0.00 0.00 3.96
804 878 7.040132 TCCTCTTGAGATAGTGTATAGTGCATG 60.040 40.741 0.00 0.00 0.00 4.06
805 879 7.040132 CCTCTTGAGATAGTGTATAGTGCATGA 60.040 40.741 0.00 0.00 0.00 3.07
806 880 8.237811 TCTTGAGATAGTGTATAGTGCATGAA 57.762 34.615 0.00 0.00 0.00 2.57
807 881 8.695456 TCTTGAGATAGTGTATAGTGCATGAAA 58.305 33.333 0.00 0.00 0.00 2.69
808 882 9.317936 CTTGAGATAGTGTATAGTGCATGAAAA 57.682 33.333 0.00 0.00 0.00 2.29
809 883 9.665719 TTGAGATAGTGTATAGTGCATGAAAAA 57.334 29.630 0.00 0.00 0.00 1.94
810 884 9.098355 TGAGATAGTGTATAGTGCATGAAAAAC 57.902 33.333 0.00 0.00 0.00 2.43
811 885 9.098355 GAGATAGTGTATAGTGCATGAAAAACA 57.902 33.333 0.00 0.00 0.00 2.83
812 886 9.102757 AGATAGTGTATAGTGCATGAAAAACAG 57.897 33.333 0.00 0.00 0.00 3.16
813 887 5.942872 AGTGTATAGTGCATGAAAAACAGC 58.057 37.500 0.00 0.00 0.00 4.40
814 888 5.095490 GTGTATAGTGCATGAAAAACAGCC 58.905 41.667 0.00 0.00 0.00 4.85
815 889 4.764308 TGTATAGTGCATGAAAAACAGCCA 59.236 37.500 0.00 0.00 0.00 4.75
816 890 5.418524 TGTATAGTGCATGAAAAACAGCCAT 59.581 36.000 0.00 0.00 0.00 4.40
817 891 6.601217 TGTATAGTGCATGAAAAACAGCCATA 59.399 34.615 0.00 0.00 0.00 2.74
818 892 4.870123 AGTGCATGAAAAACAGCCATAA 57.130 36.364 0.00 0.00 0.00 1.90
819 893 4.559153 AGTGCATGAAAAACAGCCATAAC 58.441 39.130 0.00 0.00 0.00 1.89
820 894 4.281688 AGTGCATGAAAAACAGCCATAACT 59.718 37.500 0.00 0.00 0.00 2.24
821 895 4.990426 GTGCATGAAAAACAGCCATAACTT 59.010 37.500 0.00 0.00 0.00 2.66
822 896 4.989797 TGCATGAAAAACAGCCATAACTTG 59.010 37.500 0.00 0.00 0.00 3.16
823 897 5.221402 TGCATGAAAAACAGCCATAACTTGA 60.221 36.000 0.00 0.00 0.00 3.02
824 898 5.695816 GCATGAAAAACAGCCATAACTTGAA 59.304 36.000 0.00 0.00 0.00 2.69
825 899 6.128742 GCATGAAAAACAGCCATAACTTGAAG 60.129 38.462 0.00 0.00 0.00 3.02
826 900 6.463995 TGAAAAACAGCCATAACTTGAAGT 57.536 33.333 0.00 0.00 0.00 3.01
827 901 6.872920 TGAAAAACAGCCATAACTTGAAGTT 58.127 32.000 15.57 15.57 41.97 2.66
828 902 6.756074 TGAAAAACAGCCATAACTTGAAGTTG 59.244 34.615 20.06 5.47 39.11 3.16
829 903 6.463995 AAAACAGCCATAACTTGAAGTTGA 57.536 33.333 20.06 5.43 39.11 3.18
830 904 5.695851 AACAGCCATAACTTGAAGTTGAG 57.304 39.130 20.06 11.78 39.11 3.02
831 905 4.718961 ACAGCCATAACTTGAAGTTGAGT 58.281 39.130 20.06 6.88 39.11 3.41
832 906 5.865085 ACAGCCATAACTTGAAGTTGAGTA 58.135 37.500 20.06 0.65 39.11 2.59
833 907 5.934625 ACAGCCATAACTTGAAGTTGAGTAG 59.065 40.000 20.06 8.37 39.11 2.57
834 908 5.934625 CAGCCATAACTTGAAGTTGAGTAGT 59.065 40.000 20.06 0.00 39.11 2.73
835 909 7.097192 CAGCCATAACTTGAAGTTGAGTAGTA 58.903 38.462 20.06 0.00 39.11 1.82
836 910 7.766278 CAGCCATAACTTGAAGTTGAGTAGTAT 59.234 37.037 20.06 1.35 39.11 2.12
837 911 8.322091 AGCCATAACTTGAAGTTGAGTAGTATT 58.678 33.333 20.06 0.00 39.11 1.89
838 912 8.604890 GCCATAACTTGAAGTTGAGTAGTATTC 58.395 37.037 20.06 0.00 39.11 1.75
839 913 8.808529 CCATAACTTGAAGTTGAGTAGTATTCG 58.191 37.037 20.06 0.00 39.11 3.34
840 914 9.355215 CATAACTTGAAGTTGAGTAGTATTCGT 57.645 33.333 20.06 0.00 39.11 3.85
842 916 8.739649 AACTTGAAGTTGAGTAGTATTCGTAC 57.260 34.615 10.18 0.00 37.00 3.67
843 917 8.108551 ACTTGAAGTTGAGTAGTATTCGTACT 57.891 34.615 0.00 0.00 33.25 2.73
844 918 9.224267 ACTTGAAGTTGAGTAGTATTCGTACTA 57.776 33.333 0.00 0.00 30.60 1.82
853 927 9.445878 TGAGTAGTATTCGTACTATATTCTGGG 57.554 37.037 0.00 0.00 35.30 4.45
854 928 9.447157 GAGTAGTATTCGTACTATATTCTGGGT 57.553 37.037 0.00 0.00 35.30 4.51
855 929 9.804977 AGTAGTATTCGTACTATATTCTGGGTT 57.195 33.333 0.00 0.00 35.30 4.11
890 964 8.378172 TGAAAATTACTATATTCTGGGCTTCG 57.622 34.615 0.00 0.00 0.00 3.79
891 965 6.803154 AAATTACTATATTCTGGGCTTCGC 57.197 37.500 0.00 0.00 0.00 4.70
892 966 5.746990 ATTACTATATTCTGGGCTTCGCT 57.253 39.130 0.00 0.00 0.00 4.93
893 967 6.852420 ATTACTATATTCTGGGCTTCGCTA 57.148 37.500 0.00 0.00 0.00 4.26
894 968 4.792521 ACTATATTCTGGGCTTCGCTAG 57.207 45.455 0.00 0.00 0.00 3.42
895 969 4.153411 ACTATATTCTGGGCTTCGCTAGT 58.847 43.478 0.00 0.00 0.00 2.57
896 970 2.890808 TATTCTGGGCTTCGCTAGTG 57.109 50.000 0.00 0.00 0.00 2.74
897 971 0.179000 ATTCTGGGCTTCGCTAGTGG 59.821 55.000 2.90 0.00 0.00 4.00
898 972 0.902984 TTCTGGGCTTCGCTAGTGGA 60.903 55.000 2.90 0.00 0.00 4.02
899 973 0.687757 TCTGGGCTTCGCTAGTGGAT 60.688 55.000 2.90 0.00 0.00 3.41
900 974 0.249657 CTGGGCTTCGCTAGTGGATC 60.250 60.000 2.90 0.00 0.00 3.36
901 975 0.687757 TGGGCTTCGCTAGTGGATCT 60.688 55.000 2.90 0.00 0.00 2.75
902 976 0.466124 GGGCTTCGCTAGTGGATCTT 59.534 55.000 2.90 0.00 0.00 2.40
903 977 1.576356 GGCTTCGCTAGTGGATCTTG 58.424 55.000 2.90 0.00 0.00 3.02
904 978 1.134670 GGCTTCGCTAGTGGATCTTGT 60.135 52.381 2.90 0.00 0.00 3.16
905 979 2.100916 GGCTTCGCTAGTGGATCTTGTA 59.899 50.000 2.90 0.00 0.00 2.41
906 980 3.117046 GCTTCGCTAGTGGATCTTGTAC 58.883 50.000 2.90 0.00 0.00 2.90
912 986 4.271049 CGCTAGTGGATCTTGTACCAAATG 59.729 45.833 0.00 0.00 37.94 2.32
914 988 3.009723 AGTGGATCTTGTACCAAATGCG 58.990 45.455 0.00 0.00 37.94 4.73
923 997 0.885196 TACCAAATGCGTTTCTGCCC 59.115 50.000 0.00 0.00 0.00 5.36
966 2038 4.394712 CCGGCCACACACTCCTCC 62.395 72.222 2.24 0.00 0.00 4.30
967 2039 3.314331 CGGCCACACACTCCTCCT 61.314 66.667 2.24 0.00 0.00 3.69
1302 2670 2.363018 CTCCACCTCCTCCTCGCA 60.363 66.667 0.00 0.00 0.00 5.10
1772 3140 1.377202 GGTTTGAGGAGATGCGGCA 60.377 57.895 4.58 4.58 0.00 5.69
1833 3201 1.807573 GCGCGGGTTCTTCAGAGAG 60.808 63.158 8.83 0.00 32.44 3.20
1885 3253 1.378250 GAGATGCTGCAGCTTGGGT 60.378 57.895 36.61 18.30 42.66 4.51
1909 3277 1.503542 CTGTCGGTTGCTTCCATGC 59.496 57.895 0.00 0.00 0.00 4.06
1969 3337 0.877743 GAAGGCAGCAGAGGTGTTTC 59.122 55.000 0.00 0.00 33.19 2.78
1970 3338 0.183492 AAGGCAGCAGAGGTGTTTCA 59.817 50.000 0.00 0.00 33.19 2.69
1989 3357 1.962807 CAGGAGTTTTTGGTGGATGCA 59.037 47.619 0.00 0.00 0.00 3.96
2031 3399 5.713389 TGATTGCTTGGATCTTGTTGAATCT 59.287 36.000 0.00 0.00 0.00 2.40
2046 3414 1.747355 GAATCTCTGTGCCATGTTGGG 59.253 52.381 0.00 0.00 38.19 4.12
2052 3420 1.136961 TGTGCCATGTTGGGAGGGTA 61.137 55.000 0.00 0.00 39.03 3.69
2096 3464 4.080299 GGAGTTGGTATTGGAGAGGAACAT 60.080 45.833 0.00 0.00 0.00 2.71
2234 3602 8.380099 TGTACCAGATACCATTTCTTGTAACTT 58.620 33.333 0.00 0.00 32.16 2.66
2272 3641 0.902984 TGAAGCTGGGCGGACTTCTA 60.903 55.000 11.60 0.00 40.36 2.10
2307 3676 4.104086 TGAGGATTCTGGCTAAGGAGAAA 58.896 43.478 0.00 0.00 32.07 2.52
2361 3730 1.063070 TGGTGCAGGGGTTTGGTAGA 61.063 55.000 0.00 0.00 0.00 2.59
2502 3871 5.932303 GCAATAACAAGTGAACTCCTGTAGA 59.068 40.000 0.00 0.00 0.00 2.59
2523 3892 4.637534 AGACATGTGTATGCTCCAAACATC 59.362 41.667 1.15 0.00 37.85 3.06
2544 3914 0.609151 TTTGGCCACATGGAAGCATG 59.391 50.000 3.88 0.00 37.39 4.06
2592 3962 4.394300 GTGCTTAGAATTCATGTGCAGAGT 59.606 41.667 8.44 0.00 0.00 3.24
2598 3968 6.251655 AGAATTCATGTGCAGAGTCTTTTC 57.748 37.500 8.44 0.00 0.00 2.29
2739 4109 5.353123 TGATTATGCCCTTTAGTTCGAACAC 59.647 40.000 28.78 4.97 0.00 3.32
2854 4224 5.749596 TGTGATTCACTGATTTGTTCGTT 57.250 34.783 17.26 0.00 35.11 3.85
2861 4231 6.037786 TCACTGATTTGTTCGTTCTCCTAT 57.962 37.500 0.00 0.00 0.00 2.57
2865 4235 3.343941 TTTGTTCGTTCTCCTATGGGG 57.656 47.619 0.00 0.00 0.00 4.96
3187 4557 2.432510 AGGAATAGCTAGCCTCACACAC 59.567 50.000 12.13 0.00 0.00 3.82
3212 4582 3.785486 TGCAATAGTTCTGGATCTGACG 58.215 45.455 0.00 0.00 0.00 4.35
3360 4730 8.349983 ACACTTCAAATGTAACCATACTTGTTC 58.650 33.333 0.00 0.00 32.98 3.18
3361 4731 8.349245 CACTTCAAATGTAACCATACTTGTTCA 58.651 33.333 0.00 0.00 32.98 3.18
3363 4733 9.912634 CTTCAAATGTAACCATACTTGTTCATT 57.087 29.630 0.00 0.00 32.98 2.57
3365 4735 9.689976 TCAAATGTAACCATACTTGTTCATTTG 57.310 29.630 20.19 20.19 42.72 2.32
3367 4737 9.691362 AAATGTAACCATACTTGTTCATTTGTC 57.309 29.630 0.00 0.00 35.13 3.18
3368 4738 8.635765 ATGTAACCATACTTGTTCATTTGTCT 57.364 30.769 0.00 0.00 32.98 3.41
3369 4739 7.870826 TGTAACCATACTTGTTCATTTGTCTG 58.129 34.615 0.00 0.00 32.98 3.51
3370 4740 7.717436 TGTAACCATACTTGTTCATTTGTCTGA 59.283 33.333 0.00 0.00 32.98 3.27
3371 4741 6.560253 ACCATACTTGTTCATTTGTCTGAC 57.440 37.500 0.00 0.00 0.00 3.51
3372 4742 5.179368 ACCATACTTGTTCATTTGTCTGACG 59.821 40.000 2.98 0.00 0.00 4.35
3373 4743 5.179368 CCATACTTGTTCATTTGTCTGACGT 59.821 40.000 2.98 0.00 0.00 4.34
3374 4744 6.367695 CCATACTTGTTCATTTGTCTGACGTA 59.632 38.462 2.98 0.00 0.00 3.57
3375 4745 7.064609 CCATACTTGTTCATTTGTCTGACGTAT 59.935 37.037 2.98 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 9.787532 CTCTGAAAGTACATTTTCACTTCAAAA 57.212 29.630 6.26 0.00 40.95 2.44
16 17 8.405531 CCTCTGAAAGTACATTTTCACTTCAAA 58.594 33.333 6.26 0.00 40.95 2.69
17 18 7.013274 CCCTCTGAAAGTACATTTTCACTTCAA 59.987 37.037 6.26 0.00 40.95 2.69
18 19 6.486657 CCCTCTGAAAGTACATTTTCACTTCA 59.513 38.462 6.26 0.00 40.95 3.02
19 20 6.710744 TCCCTCTGAAAGTACATTTTCACTTC 59.289 38.462 6.26 0.00 40.95 3.01
20 21 6.601332 TCCCTCTGAAAGTACATTTTCACTT 58.399 36.000 6.26 0.00 40.95 3.16
21 22 6.187727 TCCCTCTGAAAGTACATTTTCACT 57.812 37.500 6.26 0.00 40.95 3.41
22 23 6.877611 TTCCCTCTGAAAGTACATTTTCAC 57.122 37.500 6.26 0.00 40.95 3.18
23 24 7.559897 AGTTTTCCCTCTGAAAGTACATTTTCA 59.440 33.333 9.26 9.26 43.57 2.69
24 25 7.941919 AGTTTTCCCTCTGAAAGTACATTTTC 58.058 34.615 0.00 0.00 43.57 2.29
25 26 7.898014 AGTTTTCCCTCTGAAAGTACATTTT 57.102 32.000 0.00 0.00 43.57 1.82
26 27 7.201911 CCAAGTTTTCCCTCTGAAAGTACATTT 60.202 37.037 0.00 0.00 43.57 2.32
27 28 6.265422 CCAAGTTTTCCCTCTGAAAGTACATT 59.735 38.462 0.00 0.00 43.57 2.71
28 29 5.770162 CCAAGTTTTCCCTCTGAAAGTACAT 59.230 40.000 0.00 0.00 43.57 2.29
29 30 5.104277 TCCAAGTTTTCCCTCTGAAAGTACA 60.104 40.000 0.00 0.00 43.57 2.90
30 31 5.374071 TCCAAGTTTTCCCTCTGAAAGTAC 58.626 41.667 0.00 0.00 43.57 2.73
31 32 5.132144 ACTCCAAGTTTTCCCTCTGAAAGTA 59.868 40.000 0.00 0.00 43.57 2.24
32 33 4.079730 ACTCCAAGTTTTCCCTCTGAAAGT 60.080 41.667 0.00 0.00 43.57 2.66
33 34 4.464947 ACTCCAAGTTTTCCCTCTGAAAG 58.535 43.478 0.00 0.00 43.57 2.62
34 35 4.461198 GACTCCAAGTTTTCCCTCTGAAA 58.539 43.478 0.00 0.00 41.18 2.69
35 36 3.494398 CGACTCCAAGTTTTCCCTCTGAA 60.494 47.826 0.00 0.00 0.00 3.02
36 37 2.037251 CGACTCCAAGTTTTCCCTCTGA 59.963 50.000 0.00 0.00 0.00 3.27
37 38 2.037251 TCGACTCCAAGTTTTCCCTCTG 59.963 50.000 0.00 0.00 0.00 3.35
38 39 2.300437 CTCGACTCCAAGTTTTCCCTCT 59.700 50.000 0.00 0.00 0.00 3.69
39 40 2.037381 ACTCGACTCCAAGTTTTCCCTC 59.963 50.000 0.00 0.00 0.00 4.30
40 41 2.047830 ACTCGACTCCAAGTTTTCCCT 58.952 47.619 0.00 0.00 0.00 4.20
41 42 2.545537 ACTCGACTCCAAGTTTTCCC 57.454 50.000 0.00 0.00 0.00 3.97
80 81 1.203523 AGCGTGTGTTTGCCTCAAAAA 59.796 42.857 0.00 0.00 35.03 1.94
81 82 0.814457 AGCGTGTGTTTGCCTCAAAA 59.186 45.000 0.00 0.00 35.03 2.44
82 83 0.814457 AAGCGTGTGTTTGCCTCAAA 59.186 45.000 0.00 0.00 0.00 2.69
83 84 0.814457 AAAGCGTGTGTTTGCCTCAA 59.186 45.000 0.00 0.00 0.00 3.02
84 85 1.669604 TAAAGCGTGTGTTTGCCTCA 58.330 45.000 0.00 0.00 0.00 3.86
85 86 2.989422 ATAAAGCGTGTGTTTGCCTC 57.011 45.000 0.00 0.00 0.00 4.70
132 205 9.686683 AGGTATGCCTTATGATCCAATTAATAC 57.313 33.333 0.00 0.00 44.18 1.89
139 212 4.019321 GGCTAGGTATGCCTTATGATCCAA 60.019 45.833 7.98 0.00 44.18 3.53
170 243 1.189403 CGTCTTTAGATGTCGGTCGC 58.811 55.000 0.00 0.00 0.00 5.19
193 266 1.286570 CATCGCCTTGCAAAGCACA 59.713 52.632 19.55 6.03 44.44 4.57
207 280 3.074412 ACTCCAACTTTAAGGCACATCG 58.926 45.455 0.00 0.00 0.00 3.84
242 315 7.791029 TGTCTATGGCTAGTTGTCATTTCATA 58.209 34.615 0.00 0.00 41.79 2.15
247 320 7.067494 GGAAATTGTCTATGGCTAGTTGTCATT 59.933 37.037 0.00 0.00 41.79 2.57
259 332 3.806521 CAGAGCTCGGAAATTGTCTATGG 59.193 47.826 8.31 0.00 0.00 2.74
275 348 0.323816 TCATCCACGAGGTCAGAGCT 60.324 55.000 0.40 0.40 35.89 4.09
279 352 1.293924 GCAATCATCCACGAGGTCAG 58.706 55.000 0.00 0.00 35.89 3.51
281 354 1.009829 GTGCAATCATCCACGAGGTC 58.990 55.000 0.00 0.00 35.89 3.85
287 360 1.603802 CCGTATGGTGCAATCATCCAC 59.396 52.381 7.02 1.83 33.91 4.02
310 383 3.451178 GGACATTGAGCAGGGAACTAGTA 59.549 47.826 0.00 0.00 40.21 1.82
348 421 1.138859 TGTCCATAGGGCGTCAGATTG 59.861 52.381 0.00 0.00 0.00 2.67
360 433 4.160439 TCTCAACCTAGCAAGTGTCCATAG 59.840 45.833 0.00 0.00 0.00 2.23
415 488 3.145551 CAAGCATGGAGGCCCTGC 61.146 66.667 0.00 3.83 37.07 4.85
450 523 1.514657 CATCGGCCATTGTTGTGCG 60.515 57.895 2.24 0.00 0.00 5.34
517 591 2.454336 TCTCGAGATGGTATGGTGGT 57.546 50.000 12.08 0.00 0.00 4.16
540 614 0.317160 AGATCAACGTTGACGGAGCA 59.683 50.000 31.87 9.61 44.95 4.26
563 637 0.309302 TTCGCCAACGTCAAACCATG 59.691 50.000 0.00 0.00 41.18 3.66
564 638 1.001815 CTTTCGCCAACGTCAAACCAT 60.002 47.619 0.00 0.00 41.18 3.55
586 660 0.319900 AGTGTTACGAGCAGCAGGTG 60.320 55.000 0.00 0.00 0.00 4.00
591 665 1.009389 AAGCGAGTGTTACGAGCAGC 61.009 55.000 0.00 0.00 0.00 5.25
610 684 2.821378 TGACTACAGCGGCAACTACTAA 59.179 45.455 1.45 0.00 0.00 2.24
615 689 1.512926 CTTTGACTACAGCGGCAACT 58.487 50.000 1.45 0.00 0.00 3.16
617 691 0.250295 AGCTTTGACTACAGCGGCAA 60.250 50.000 1.45 0.00 0.00 4.52
618 692 0.250295 AAGCTTTGACTACAGCGGCA 60.250 50.000 1.45 0.00 0.00 5.69
619 693 0.875059 AAAGCTTTGACTACAGCGGC 59.125 50.000 11.80 0.00 0.00 6.53
620 694 2.094417 GCTAAAGCTTTGACTACAGCGG 59.906 50.000 22.02 0.82 38.21 5.52
621 695 3.375911 GCTAAAGCTTTGACTACAGCG 57.624 47.619 22.02 0.51 38.21 5.18
642 716 3.701205 TCAGAGCTAGGTGCAATTCAA 57.299 42.857 0.00 0.00 45.94 2.69
671 745 7.613585 TGAACATATTCATTGCTTTGTGGATT 58.386 30.769 0.00 0.00 40.01 3.01
672 746 7.172868 TGAACATATTCATTGCTTTGTGGAT 57.827 32.000 0.00 0.00 40.01 3.41
673 747 6.350361 CCTGAACATATTCATTGCTTTGTGGA 60.350 38.462 0.00 0.00 43.92 4.02
675 749 5.808540 CCCTGAACATATTCATTGCTTTGTG 59.191 40.000 0.00 0.00 43.92 3.33
676 750 5.625197 GCCCTGAACATATTCATTGCTTTGT 60.625 40.000 0.00 0.00 43.92 2.83
678 752 4.713321 AGCCCTGAACATATTCATTGCTTT 59.287 37.500 4.74 0.00 43.60 3.51
679 753 4.284178 AGCCCTGAACATATTCATTGCTT 58.716 39.130 4.74 0.00 43.60 3.91
680 754 3.887716 GAGCCCTGAACATATTCATTGCT 59.112 43.478 9.21 9.21 46.30 3.91
681 755 3.887716 AGAGCCCTGAACATATTCATTGC 59.112 43.478 0.63 0.63 43.92 3.56
682 756 4.277672 CCAGAGCCCTGAACATATTCATTG 59.722 45.833 0.00 0.00 43.92 2.82
683 757 4.166725 TCCAGAGCCCTGAACATATTCATT 59.833 41.667 0.00 0.00 43.92 2.57
684 758 3.718434 TCCAGAGCCCTGAACATATTCAT 59.282 43.478 0.00 0.00 43.92 2.57
685 759 3.114606 TCCAGAGCCCTGAACATATTCA 58.885 45.455 0.00 0.00 43.02 2.57
686 760 3.845781 TCCAGAGCCCTGAACATATTC 57.154 47.619 0.00 0.00 43.02 1.75
687 761 4.803329 ATTCCAGAGCCCTGAACATATT 57.197 40.909 0.00 0.00 43.02 1.28
688 762 6.732862 AGTATATTCCAGAGCCCTGAACATAT 59.267 38.462 0.00 0.00 43.02 1.78
689 763 6.084738 AGTATATTCCAGAGCCCTGAACATA 58.915 40.000 0.00 0.00 43.02 2.29
690 764 4.910304 AGTATATTCCAGAGCCCTGAACAT 59.090 41.667 0.00 0.00 43.02 2.71
691 765 4.298626 AGTATATTCCAGAGCCCTGAACA 58.701 43.478 0.00 0.00 43.02 3.18
692 766 4.965200 AGTATATTCCAGAGCCCTGAAC 57.035 45.455 0.00 0.00 43.02 3.18
693 767 5.428457 TGAAAGTATATTCCAGAGCCCTGAA 59.572 40.000 0.00 0.00 43.02 3.02
694 768 4.968719 TGAAAGTATATTCCAGAGCCCTGA 59.031 41.667 0.00 0.00 43.02 3.86
695 769 5.296151 TGAAAGTATATTCCAGAGCCCTG 57.704 43.478 0.00 0.00 40.09 4.45
696 770 5.608437 TCATGAAAGTATATTCCAGAGCCCT 59.392 40.000 0.00 0.00 0.00 5.19
697 771 5.869579 TCATGAAAGTATATTCCAGAGCCC 58.130 41.667 0.00 0.00 0.00 5.19
698 772 7.992754 ATTCATGAAAGTATATTCCAGAGCC 57.007 36.000 13.09 0.00 0.00 4.70
699 773 7.806960 GCAATTCATGAAAGTATATTCCAGAGC 59.193 37.037 13.09 0.00 0.00 4.09
700 774 8.295288 GGCAATTCATGAAAGTATATTCCAGAG 58.705 37.037 13.09 0.00 0.00 3.35
701 775 8.000709 AGGCAATTCATGAAAGTATATTCCAGA 58.999 33.333 13.09 0.00 0.00 3.86
702 776 8.174733 AGGCAATTCATGAAAGTATATTCCAG 57.825 34.615 13.09 0.00 0.00 3.86
703 777 8.415553 CAAGGCAATTCATGAAAGTATATTCCA 58.584 33.333 13.09 0.00 0.00 3.53
704 778 7.383300 GCAAGGCAATTCATGAAAGTATATTCC 59.617 37.037 13.09 5.64 0.00 3.01
705 779 7.113965 CGCAAGGCAATTCATGAAAGTATATTC 59.886 37.037 13.09 0.00 0.00 1.75
706 780 6.919662 CGCAAGGCAATTCATGAAAGTATATT 59.080 34.615 13.09 0.00 0.00 1.28
707 781 6.039717 ACGCAAGGCAATTCATGAAAGTATAT 59.960 34.615 13.09 0.00 46.39 0.86
708 782 5.356751 ACGCAAGGCAATTCATGAAAGTATA 59.643 36.000 13.09 0.00 46.39 1.47
709 783 4.158394 ACGCAAGGCAATTCATGAAAGTAT 59.842 37.500 13.09 0.00 46.39 2.12
710 784 3.505680 ACGCAAGGCAATTCATGAAAGTA 59.494 39.130 13.09 0.00 46.39 2.24
711 785 2.297033 ACGCAAGGCAATTCATGAAAGT 59.703 40.909 13.09 0.28 46.39 2.66
712 786 2.950433 ACGCAAGGCAATTCATGAAAG 58.050 42.857 13.09 9.43 46.39 2.62
731 805 1.520342 GCCATCTGGTCAGCGAGAC 60.520 63.158 4.03 4.03 46.83 3.36
732 806 2.725312 GGCCATCTGGTCAGCGAGA 61.725 63.158 0.00 0.00 40.23 4.04
733 807 2.202987 GGCCATCTGGTCAGCGAG 60.203 66.667 0.00 0.00 40.23 5.03
734 808 3.785859 GGGCCATCTGGTCAGCGA 61.786 66.667 4.39 0.00 42.93 4.93
735 809 2.043604 TATGGGCCATCTGGTCAGCG 62.044 60.000 25.07 0.00 42.93 5.18
736 810 0.250640 CTATGGGCCATCTGGTCAGC 60.251 60.000 25.07 0.00 42.93 4.26
737 811 0.250640 GCTATGGGCCATCTGGTCAG 60.251 60.000 25.07 14.82 42.93 3.51
738 812 1.839191 GCTATGGGCCATCTGGTCA 59.161 57.895 25.07 2.79 42.93 4.02
739 813 1.302033 CGCTATGGGCCATCTGGTC 60.302 63.158 25.07 7.73 39.63 4.02
740 814 2.044806 GACGCTATGGGCCATCTGGT 62.045 60.000 25.07 18.40 37.74 4.00
741 815 1.302033 GACGCTATGGGCCATCTGG 60.302 63.158 25.07 15.17 37.74 3.86
742 816 0.882042 GTGACGCTATGGGCCATCTG 60.882 60.000 25.07 17.94 37.74 2.90
743 817 1.050988 AGTGACGCTATGGGCCATCT 61.051 55.000 25.07 9.20 37.74 2.90
744 818 0.679505 TAGTGACGCTATGGGCCATC 59.320 55.000 25.07 10.01 37.74 3.51
745 819 1.276421 GATAGTGACGCTATGGGCCAT 59.724 52.381 24.69 24.69 40.30 4.40
746 820 0.679505 GATAGTGACGCTATGGGCCA 59.320 55.000 9.61 9.61 40.30 5.36
747 821 0.679505 TGATAGTGACGCTATGGGCC 59.320 55.000 13.22 0.00 40.30 5.80
748 822 2.029020 TGATGATAGTGACGCTATGGGC 60.029 50.000 13.22 0.31 40.30 5.36
749 823 3.942130 TGATGATAGTGACGCTATGGG 57.058 47.619 13.22 0.00 40.30 4.00
750 824 5.119743 CACAATGATGATAGTGACGCTATGG 59.880 44.000 13.22 0.00 40.30 2.74
751 825 5.922544 TCACAATGATGATAGTGACGCTATG 59.077 40.000 13.22 1.59 40.30 2.23
752 826 6.089249 TCACAATGATGATAGTGACGCTAT 57.911 37.500 8.28 8.28 42.75 2.97
753 827 5.514274 TCACAATGATGATAGTGACGCTA 57.486 39.130 0.00 0.00 36.20 4.26
754 828 4.391405 TCACAATGATGATAGTGACGCT 57.609 40.909 0.00 0.00 36.20 5.07
755 829 5.663795 ATTCACAATGATGATAGTGACGC 57.336 39.130 0.00 0.00 40.37 5.19
756 830 6.481313 AGGAATTCACAATGATGATAGTGACG 59.519 38.462 7.93 0.00 40.37 4.35
757 831 7.714377 AGAGGAATTCACAATGATGATAGTGAC 59.286 37.037 7.93 0.00 40.37 3.67
758 832 7.799081 AGAGGAATTCACAATGATGATAGTGA 58.201 34.615 7.93 0.00 39.06 3.41
759 833 8.343366 CAAGAGGAATTCACAATGATGATAGTG 58.657 37.037 7.93 0.00 0.00 2.74
760 834 8.270030 TCAAGAGGAATTCACAATGATGATAGT 58.730 33.333 7.93 0.00 0.00 2.12
761 835 8.672823 TCAAGAGGAATTCACAATGATGATAG 57.327 34.615 7.93 0.00 0.00 2.08
762 836 8.488668 TCTCAAGAGGAATTCACAATGATGATA 58.511 33.333 7.93 0.00 0.00 2.15
763 837 7.344134 TCTCAAGAGGAATTCACAATGATGAT 58.656 34.615 7.93 0.00 0.00 2.45
764 838 6.714278 TCTCAAGAGGAATTCACAATGATGA 58.286 36.000 7.93 1.77 0.00 2.92
765 839 6.997239 TCTCAAGAGGAATTCACAATGATG 57.003 37.500 7.93 0.00 0.00 3.07
766 840 8.492782 ACTATCTCAAGAGGAATTCACAATGAT 58.507 33.333 7.93 4.70 0.00 2.45
767 841 7.767659 CACTATCTCAAGAGGAATTCACAATGA 59.232 37.037 7.93 5.56 0.00 2.57
768 842 7.551974 ACACTATCTCAAGAGGAATTCACAATG 59.448 37.037 7.93 1.30 0.00 2.82
769 843 7.628234 ACACTATCTCAAGAGGAATTCACAAT 58.372 34.615 7.93 0.00 0.00 2.71
770 844 7.009179 ACACTATCTCAAGAGGAATTCACAA 57.991 36.000 7.93 0.00 0.00 3.33
771 845 6.611613 ACACTATCTCAAGAGGAATTCACA 57.388 37.500 7.93 0.00 0.00 3.58
772 846 9.906660 CTATACACTATCTCAAGAGGAATTCAC 57.093 37.037 7.93 0.77 0.00 3.18
773 847 9.647918 ACTATACACTATCTCAAGAGGAATTCA 57.352 33.333 7.93 0.00 0.00 2.57
774 848 9.906660 CACTATACACTATCTCAAGAGGAATTC 57.093 37.037 0.00 0.00 0.00 2.17
775 849 8.364142 GCACTATACACTATCTCAAGAGGAATT 58.636 37.037 0.00 0.00 0.00 2.17
776 850 7.507277 TGCACTATACACTATCTCAAGAGGAAT 59.493 37.037 0.00 0.00 0.00 3.01
777 851 6.833933 TGCACTATACACTATCTCAAGAGGAA 59.166 38.462 0.00 0.00 0.00 3.36
778 852 6.365520 TGCACTATACACTATCTCAAGAGGA 58.634 40.000 0.00 0.00 0.00 3.71
779 853 6.641169 TGCACTATACACTATCTCAAGAGG 57.359 41.667 0.00 0.00 0.00 3.69
780 854 7.880105 TCATGCACTATACACTATCTCAAGAG 58.120 38.462 0.00 0.00 0.00 2.85
781 855 7.823745 TCATGCACTATACACTATCTCAAGA 57.176 36.000 0.00 0.00 0.00 3.02
782 856 8.877808 TTTCATGCACTATACACTATCTCAAG 57.122 34.615 0.00 0.00 0.00 3.02
783 857 9.665719 TTTTTCATGCACTATACACTATCTCAA 57.334 29.630 0.00 0.00 0.00 3.02
784 858 9.098355 GTTTTTCATGCACTATACACTATCTCA 57.902 33.333 0.00 0.00 0.00 3.27
785 859 9.098355 TGTTTTTCATGCACTATACACTATCTC 57.902 33.333 0.00 0.00 0.00 2.75
786 860 9.102757 CTGTTTTTCATGCACTATACACTATCT 57.897 33.333 0.00 0.00 0.00 1.98
787 861 7.852945 GCTGTTTTTCATGCACTATACACTATC 59.147 37.037 0.00 0.00 0.00 2.08
788 862 7.201732 GGCTGTTTTTCATGCACTATACACTAT 60.202 37.037 0.00 0.00 0.00 2.12
789 863 6.093495 GGCTGTTTTTCATGCACTATACACTA 59.907 38.462 0.00 0.00 0.00 2.74
790 864 5.106157 GGCTGTTTTTCATGCACTATACACT 60.106 40.000 0.00 0.00 0.00 3.55
791 865 5.095490 GGCTGTTTTTCATGCACTATACAC 58.905 41.667 0.00 0.00 0.00 2.90
792 866 4.764308 TGGCTGTTTTTCATGCACTATACA 59.236 37.500 0.00 0.00 0.00 2.29
793 867 5.309323 TGGCTGTTTTTCATGCACTATAC 57.691 39.130 0.00 0.00 0.00 1.47
794 868 7.339212 AGTTATGGCTGTTTTTCATGCACTATA 59.661 33.333 0.00 0.00 0.00 1.31
795 869 6.153340 AGTTATGGCTGTTTTTCATGCACTAT 59.847 34.615 0.00 0.00 0.00 2.12
796 870 5.476599 AGTTATGGCTGTTTTTCATGCACTA 59.523 36.000 0.00 0.00 0.00 2.74
797 871 4.281688 AGTTATGGCTGTTTTTCATGCACT 59.718 37.500 0.00 0.00 0.00 4.40
798 872 4.559153 AGTTATGGCTGTTTTTCATGCAC 58.441 39.130 0.00 0.00 0.00 4.57
799 873 4.870123 AGTTATGGCTGTTTTTCATGCA 57.130 36.364 0.00 0.00 0.00 3.96
800 874 5.229423 TCAAGTTATGGCTGTTTTTCATGC 58.771 37.500 0.00 0.00 0.00 4.06
801 875 6.925165 ACTTCAAGTTATGGCTGTTTTTCATG 59.075 34.615 0.00 0.00 0.00 3.07
802 876 7.054491 ACTTCAAGTTATGGCTGTTTTTCAT 57.946 32.000 0.00 0.00 0.00 2.57
803 877 6.463995 ACTTCAAGTTATGGCTGTTTTTCA 57.536 33.333 0.00 0.00 0.00 2.69
804 878 6.978080 TCAACTTCAAGTTATGGCTGTTTTTC 59.022 34.615 1.43 0.00 36.03 2.29
805 879 6.872920 TCAACTTCAAGTTATGGCTGTTTTT 58.127 32.000 1.43 0.00 36.03 1.94
806 880 6.096846 ACTCAACTTCAAGTTATGGCTGTTTT 59.903 34.615 1.43 0.00 36.03 2.43
807 881 5.594317 ACTCAACTTCAAGTTATGGCTGTTT 59.406 36.000 1.43 0.00 36.03 2.83
808 882 5.133221 ACTCAACTTCAAGTTATGGCTGTT 58.867 37.500 1.43 0.00 36.03 3.16
809 883 4.718961 ACTCAACTTCAAGTTATGGCTGT 58.281 39.130 1.43 0.00 36.03 4.40
810 884 5.934625 ACTACTCAACTTCAAGTTATGGCTG 59.065 40.000 1.43 0.00 36.03 4.85
811 885 6.115448 ACTACTCAACTTCAAGTTATGGCT 57.885 37.500 1.43 0.00 36.03 4.75
812 886 8.494016 AATACTACTCAACTTCAAGTTATGGC 57.506 34.615 1.43 0.00 36.03 4.40
813 887 8.808529 CGAATACTACTCAACTTCAAGTTATGG 58.191 37.037 1.43 0.00 36.03 2.74
814 888 9.355215 ACGAATACTACTCAACTTCAAGTTATG 57.645 33.333 1.43 1.44 36.03 1.90
816 890 9.831737 GTACGAATACTACTCAACTTCAAGTTA 57.168 33.333 1.43 0.00 36.03 2.24
817 891 8.574737 AGTACGAATACTACTCAACTTCAAGTT 58.425 33.333 0.00 0.00 40.02 2.66
818 892 8.108551 AGTACGAATACTACTCAACTTCAAGT 57.891 34.615 0.00 0.00 40.02 3.16
827 901 9.445878 CCCAGAATATAGTACGAATACTACTCA 57.554 37.037 0.00 0.00 44.81 3.41
828 902 9.447157 ACCCAGAATATAGTACGAATACTACTC 57.553 37.037 0.00 0.00 44.81 2.59
829 903 9.804977 AACCCAGAATATAGTACGAATACTACT 57.195 33.333 0.00 0.00 44.81 2.57
864 938 8.836413 CGAAGCCCAGAATATAGTAATTTTCAA 58.164 33.333 0.00 0.00 0.00 2.69
865 939 8.378172 CGAAGCCCAGAATATAGTAATTTTCA 57.622 34.615 0.00 0.00 0.00 2.69
886 960 3.130516 TGGTACAAGATCCACTAGCGAAG 59.869 47.826 0.00 0.00 31.92 3.79
887 961 3.093814 TGGTACAAGATCCACTAGCGAA 58.906 45.455 0.00 0.00 31.92 4.70
888 962 2.730382 TGGTACAAGATCCACTAGCGA 58.270 47.619 0.00 0.00 31.92 4.93
902 976 1.268352 GGCAGAAACGCATTTGGTACA 59.732 47.619 0.00 0.00 0.00 2.90
903 977 1.402325 GGGCAGAAACGCATTTGGTAC 60.402 52.381 0.00 0.00 0.00 3.34
904 978 0.885196 GGGCAGAAACGCATTTGGTA 59.115 50.000 0.00 0.00 0.00 3.25
905 979 1.665442 GGGCAGAAACGCATTTGGT 59.335 52.632 0.00 0.00 0.00 3.67
906 980 1.444212 CGGGCAGAAACGCATTTGG 60.444 57.895 0.00 0.00 0.00 3.28
933 1999 2.362369 CGGGTCAGTGAGATGGGCT 61.362 63.158 0.00 0.00 0.00 5.19
934 2000 2.187946 CGGGTCAGTGAGATGGGC 59.812 66.667 0.00 0.00 0.00 5.36
937 2003 2.187946 GGCCGGGTCAGTGAGATG 59.812 66.667 2.18 0.00 0.00 2.90
938 2004 2.284625 TGGCCGGGTCAGTGAGAT 60.285 61.111 2.18 0.00 0.00 2.75
939 2005 3.311110 GTGGCCGGGTCAGTGAGA 61.311 66.667 0.00 0.00 0.00 3.27
940 2006 3.625897 TGTGGCCGGGTCAGTGAG 61.626 66.667 0.00 0.00 0.00 3.51
941 2007 3.936203 GTGTGGCCGGGTCAGTGA 61.936 66.667 0.00 0.00 0.00 3.41
942 2008 4.248842 TGTGTGGCCGGGTCAGTG 62.249 66.667 0.00 0.00 0.00 3.66
943 2009 4.250305 GTGTGTGGCCGGGTCAGT 62.250 66.667 0.00 0.00 0.00 3.41
944 2010 3.883744 GAGTGTGTGGCCGGGTCAG 62.884 68.421 0.00 0.00 0.00 3.51
966 2038 0.553333 GGGAAGGGGGAAGGAATCAG 59.447 60.000 0.00 0.00 0.00 2.90
967 2039 0.123266 AGGGAAGGGGGAAGGAATCA 59.877 55.000 0.00 0.00 0.00 2.57
1679 3047 1.306654 AAGGTGTAGGCATCCGGGA 60.307 57.895 0.00 0.00 0.00 5.14
1833 3201 1.378646 GCCTTCCTTGTACCTGCCC 60.379 63.158 0.00 0.00 0.00 5.36
1909 3277 1.402968 CAGCCCACCGATCAAAATCTG 59.597 52.381 0.00 0.00 0.00 2.90
1969 3337 1.962807 TGCATCCACCAAAAACTCCTG 59.037 47.619 0.00 0.00 0.00 3.86
1970 3338 2.242043 CTGCATCCACCAAAAACTCCT 58.758 47.619 0.00 0.00 0.00 3.69
1989 3357 2.763645 AAACCCTTCCGGCACCACT 61.764 57.895 0.00 0.00 33.26 4.00
2046 3414 1.623811 TCCACTGCTTTGTCTACCCTC 59.376 52.381 0.00 0.00 0.00 4.30
2052 3420 1.212935 ACCACTTCCACTGCTTTGTCT 59.787 47.619 0.00 0.00 0.00 3.41
2234 3602 4.265904 TCACAAAGTGCCTCGAAGATAA 57.734 40.909 0.00 0.00 31.34 1.75
2272 3641 3.830755 AGAATCCTCAGCTTGTTTGCATT 59.169 39.130 0.00 0.00 34.99 3.56
2307 3676 1.145738 ACACCATCAGCCTGAAAACCT 59.854 47.619 0.00 0.00 0.00 3.50
2361 3730 1.068121 CTTCCTTCACCCTTCCCTGT 58.932 55.000 0.00 0.00 0.00 4.00
2502 3871 4.592942 AGATGTTTGGAGCATACACATGT 58.407 39.130 0.00 0.00 34.40 3.21
2523 3892 0.680618 TGCTTCCATGTGGCCAAAAG 59.319 50.000 7.24 0.00 34.44 2.27
2544 3914 4.314121 ACTCTCTGACATCTTGCAGTTTC 58.686 43.478 0.00 0.00 33.90 2.78
2592 3962 8.244802 TGTTTTGTTTTATGTTCCTCGAAAAGA 58.755 29.630 0.00 0.00 0.00 2.52
2598 3968 5.689961 CCCTTGTTTTGTTTTATGTTCCTCG 59.310 40.000 0.00 0.00 0.00 4.63
2739 4109 6.138761 GTGCAGACAACAAAATCAAGACTAG 58.861 40.000 0.00 0.00 0.00 2.57
2801 4171 7.092891 TGTTTACAGATACCATGAGTCCAAGAT 60.093 37.037 0.00 0.00 0.00 2.40
2854 4224 9.101325 CAAAGTAAATATAGACCCCATAGGAGA 57.899 37.037 0.00 0.00 39.89 3.71
2861 4231 6.949715 ACGAACAAAGTAAATATAGACCCCA 58.050 36.000 0.00 0.00 0.00 4.96
2865 4235 9.362539 TCCTTGACGAACAAAGTAAATATAGAC 57.637 33.333 0.00 0.00 38.08 2.59
3187 4557 5.064452 GTCAGATCCAGAACTATTGCAAGTG 59.936 44.000 4.94 2.41 0.00 3.16
3212 4582 1.731720 GCTGATGGAGGTTGTGACTC 58.268 55.000 0.00 0.00 0.00 3.36
3275 4645 8.861086 TGCAACCAACCAAAGTTATAAATAAGA 58.139 29.630 0.00 0.00 33.27 2.10
3276 4646 9.482627 TTGCAACCAACCAAAGTTATAAATAAG 57.517 29.630 0.00 0.00 33.27 1.73
3360 4730 4.083855 ACAGCACAATACGTCAGACAAATG 60.084 41.667 0.41 0.00 0.00 2.32
3361 4731 4.065088 ACAGCACAATACGTCAGACAAAT 58.935 39.130 0.41 0.00 0.00 2.32
3363 4733 3.106242 ACAGCACAATACGTCAGACAA 57.894 42.857 0.41 0.00 0.00 3.18
3364 4734 2.812358 ACAGCACAATACGTCAGACA 57.188 45.000 0.41 0.00 0.00 3.41
3365 4735 3.493129 TCAAACAGCACAATACGTCAGAC 59.507 43.478 0.00 0.00 0.00 3.51
3367 4737 4.024893 AGTTCAAACAGCACAATACGTCAG 60.025 41.667 0.00 0.00 0.00 3.51
3368 4738 3.874543 AGTTCAAACAGCACAATACGTCA 59.125 39.130 0.00 0.00 0.00 4.35
3369 4739 4.211389 CAGTTCAAACAGCACAATACGTC 58.789 43.478 0.00 0.00 0.00 4.34
3370 4740 3.625764 ACAGTTCAAACAGCACAATACGT 59.374 39.130 0.00 0.00 0.00 3.57
3371 4741 4.209452 ACAGTTCAAACAGCACAATACG 57.791 40.909 0.00 0.00 0.00 3.06
3372 4742 6.055231 TGTACAGTTCAAACAGCACAATAC 57.945 37.500 0.00 0.00 0.00 1.89
3373 4743 5.820423 ACTGTACAGTTCAAACAGCACAATA 59.180 36.000 22.95 0.00 43.53 1.90
3374 4744 4.640201 ACTGTACAGTTCAAACAGCACAAT 59.360 37.500 22.95 0.00 43.53 2.71
3375 4745 4.006989 ACTGTACAGTTCAAACAGCACAA 58.993 39.130 22.95 0.00 43.53 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.