Multiple sequence alignment - TraesCS3B01G449800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G449800 chr3B 100.000 7064 0 0 311 7374 690362273 690369336 0.000000e+00 13045.0
1 TraesCS3B01G449800 chr3B 91.461 527 36 5 311 830 804314877 804315401 0.000000e+00 715.0
2 TraesCS3B01G449800 chr3B 90.458 524 37 9 317 830 146297296 146296776 0.000000e+00 678.0
3 TraesCS3B01G449800 chr3B 87.966 349 27 4 1142 1484 689055153 689054814 1.490000e-106 398.0
4 TraesCS3B01G449800 chr3B 85.263 190 21 5 1710 1896 689819778 689819963 9.770000e-44 189.0
5 TraesCS3B01G449800 chr3B 100.000 102 0 0 1 102 690361963 690362064 9.770000e-44 189.0
6 TraesCS3B01G449800 chr3B 96.154 104 2 2 1 102 662418781 662418884 1.270000e-37 169.0
7 TraesCS3B01G449800 chr3D 97.031 2863 71 6 1560 4414 523322703 523325559 0.000000e+00 4804.0
8 TraesCS3B01G449800 chr3D 93.056 1901 92 25 2516 4392 523443110 523444994 0.000000e+00 2743.0
9 TraesCS3B01G449800 chr3D 87.914 1903 151 36 4413 6272 523325663 523327529 0.000000e+00 2167.0
10 TraesCS3B01G449800 chr3D 86.927 1767 127 35 4549 6273 523445019 523446723 0.000000e+00 1888.0
11 TraesCS3B01G449800 chr3D 91.973 735 36 11 837 1557 523321897 523322622 0.000000e+00 1009.0
12 TraesCS3B01G449800 chr3D 91.077 594 36 8 1958 2535 523442474 523443066 0.000000e+00 787.0
13 TraesCS3B01G449800 chr3D 84.676 633 70 15 6742 7370 39863129 39862520 2.280000e-169 606.0
14 TraesCS3B01G449800 chr3D 85.199 554 64 11 1142 1679 523441770 523442321 3.010000e-153 553.0
15 TraesCS3B01G449800 chr3D 80.519 308 48 10 1591 1893 523241776 523242076 7.440000e-55 226.0
16 TraesCS3B01G449800 chr3D 89.634 164 15 2 7207 7370 584762225 584762064 2.700000e-49 207.0
17 TraesCS3B01G449800 chr3D 82.105 190 31 3 1369 1557 523241491 523241678 7.660000e-35 159.0
18 TraesCS3B01G449800 chr3D 89.600 125 4 2 6274 6393 523327585 523327705 4.610000e-32 150.0
19 TraesCS3B01G449800 chr3D 88.235 85 4 2 6337 6415 523446817 523446901 6.090000e-16 97.1
20 TraesCS3B01G449800 chr3A 90.176 3573 224 50 2760 6273 658240831 658244335 0.000000e+00 4536.0
21 TraesCS3B01G449800 chr3A 88.017 918 73 18 1591 2478 658239726 658240636 0.000000e+00 1051.0
22 TraesCS3B01G449800 chr3A 88.571 490 42 6 1070 1557 658239150 658239627 3.830000e-162 582.0
23 TraesCS3B01G449800 chr3A 93.750 192 12 0 1552 1743 714722868 714722677 9.360000e-74 289.0
24 TraesCS3B01G449800 chr3A 85.263 190 21 5 1710 1896 658053216 658053401 9.770000e-44 189.0
25 TraesCS3B01G449800 chr3A 88.489 139 10 3 6282 6415 658244386 658244523 5.920000e-36 163.0
26 TraesCS3B01G449800 chr3A 89.474 133 5 5 6428 6551 658244593 658244725 7.660000e-35 159.0
27 TraesCS3B01G449800 chr2B 91.902 531 33 6 311 832 725812845 725812316 0.000000e+00 734.0
28 TraesCS3B01G449800 chr2B 90.702 527 41 6 311 830 479990980 479991505 0.000000e+00 695.0
29 TraesCS3B01G449800 chr2B 90.076 524 43 9 316 830 618049515 618048992 0.000000e+00 671.0
30 TraesCS3B01G449800 chr2B 96.078 102 4 0 1 102 17894034 17894135 4.580000e-37 167.0
31 TraesCS3B01G449800 chr2B 96.078 102 3 1 1 101 96148772 96148671 1.650000e-36 165.0
32 TraesCS3B01G449800 chr2B 95.192 104 3 1 1 102 725812791 725812688 5.920000e-36 163.0
33 TraesCS3B01G449800 chr4A 96.471 425 15 0 1078 1502 715475130 715474706 0.000000e+00 702.0
34 TraesCS3B01G449800 chr4A 95.146 103 3 2 1 102 660736007 660736108 2.130000e-35 161.0
35 TraesCS3B01G449800 chr5B 90.414 532 41 5 311 833 621778013 621777483 0.000000e+00 691.0
36 TraesCS3B01G449800 chr5B 95.192 104 3 2 1 102 621777961 621777858 5.920000e-36 163.0
37 TraesCS3B01G449800 chr5B 95.146 103 3 2 1 102 389476227 389476126 2.130000e-35 161.0
38 TraesCS3B01G449800 chr5B 95.098 102 5 0 1 102 489848377 489848478 2.130000e-35 161.0
39 TraesCS3B01G449800 chr1B 90.414 532 39 10 311 833 576600375 576599847 0.000000e+00 689.0
40 TraesCS3B01G449800 chr1B 82.643 507 60 14 6868 7370 646872735 646872253 2.460000e-114 424.0
41 TraesCS3B01G449800 chrUn 90.494 526 41 5 314 833 75667456 75666934 0.000000e+00 686.0
42 TraesCS3B01G449800 chr4B 89.583 528 45 7 311 830 417535335 417535860 0.000000e+00 662.0
43 TraesCS3B01G449800 chr4B 95.098 102 5 0 1 102 347598771 347598872 2.130000e-35 161.0
44 TraesCS3B01G449800 chr1D 83.673 637 73 16 6739 7367 483976812 483977425 8.300000e-159 571.0
45 TraesCS3B01G449800 chr7D 83.451 568 64 15 6744 7299 546782021 546782570 1.100000e-137 501.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G449800 chr3B 690361963 690369336 7373 False 6617.00 13045 100.0000 1 7374 2 chr3B.!!$F4 7373
1 TraesCS3B01G449800 chr3B 804314877 804315401 524 False 715.00 715 91.4610 311 830 1 chr3B.!!$F3 519
2 TraesCS3B01G449800 chr3B 146296776 146297296 520 True 678.00 678 90.4580 317 830 1 chr3B.!!$R1 513
3 TraesCS3B01G449800 chr3D 523321897 523327705 5808 False 2032.50 4804 91.6295 837 6393 4 chr3D.!!$F2 5556
4 TraesCS3B01G449800 chr3D 523441770 523446901 5131 False 1213.62 2743 88.8988 1142 6415 5 chr3D.!!$F3 5273
5 TraesCS3B01G449800 chr3D 39862520 39863129 609 True 606.00 606 84.6760 6742 7370 1 chr3D.!!$R1 628
6 TraesCS3B01G449800 chr3A 658239150 658244725 5575 False 1298.20 4536 88.9454 1070 6551 5 chr3A.!!$F2 5481
7 TraesCS3B01G449800 chr2B 479990980 479991505 525 False 695.00 695 90.7020 311 830 1 chr2B.!!$F2 519
8 TraesCS3B01G449800 chr2B 618048992 618049515 523 True 671.00 671 90.0760 316 830 1 chr2B.!!$R2 514
9 TraesCS3B01G449800 chr2B 725812316 725812845 529 True 448.50 734 93.5470 1 832 2 chr2B.!!$R3 831
10 TraesCS3B01G449800 chr5B 621777483 621778013 530 True 427.00 691 92.8030 1 833 2 chr5B.!!$R2 832
11 TraesCS3B01G449800 chr1B 576599847 576600375 528 True 689.00 689 90.4140 311 833 1 chr1B.!!$R1 522
12 TraesCS3B01G449800 chrUn 75666934 75667456 522 True 686.00 686 90.4940 314 833 1 chrUn.!!$R1 519
13 TraesCS3B01G449800 chr4B 417535335 417535860 525 False 662.00 662 89.5830 311 830 1 chr4B.!!$F2 519
14 TraesCS3B01G449800 chr1D 483976812 483977425 613 False 571.00 571 83.6730 6739 7367 1 chr1D.!!$F1 628
15 TraesCS3B01G449800 chr7D 546782021 546782570 549 False 501.00 501 83.4510 6744 7299 1 chr7D.!!$F1 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
62 63 0.949105 GCGTGCCTCTTTCGGAAAGA 60.949 55.0 26.61 26.61 44.82 2.52 F
1054 1087 0.533032 CTCGAACCTGGAGGAGGAAC 59.467 60.0 0.00 0.00 46.33 3.62 F
1824 1970 0.743097 GAATCCCAAGGCATGCTCAC 59.257 55.0 18.92 0.18 0.00 3.51 F
3000 3277 1.757682 TGCGAAAAACCCAGACTGTT 58.242 45.0 0.93 0.00 0.00 3.16 F
4003 4301 0.823460 CACCTGTTGTTTTGGGCTGT 59.177 50.0 0.00 0.00 0.00 4.40 F
5616 6056 0.589229 CCGTGATCTACTGCGACGAC 60.589 60.0 0.00 0.00 31.71 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1894 2042 0.108585 ACATGCCCAGACGTTTCAGT 59.891 50.000 0.0 0.0 0.00 3.41 R
3006 3283 1.434188 TGAAGCAAACCTCCTCTCCA 58.566 50.000 0.0 0.0 0.00 3.86 R
3416 3694 3.889815 TCATTCTTAGACAGGCATTGGG 58.110 45.455 0.0 0.0 0.00 4.12 R
4692 5111 0.250124 ACCGACGAAGCAAATGGACA 60.250 50.000 0.0 0.0 0.00 4.02 R
5919 6413 0.175760 GCCGCAGATCCACTACTTCA 59.824 55.000 0.0 0.0 0.00 3.02 R
6803 7451 0.038709 GCATTTTGCTGCCACGGTTA 60.039 50.000 0.0 0.0 40.96 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.425124 CACGGTTGTGCTTTCGCG 60.425 61.111 0.00 0.00 39.67 5.87
33 34 2.586635 ACGGTTGTGCTTTCGCGA 60.587 55.556 3.71 3.71 39.65 5.87
34 35 2.170985 CGGTTGTGCTTTCGCGAG 59.829 61.111 9.59 0.00 39.65 5.03
35 36 2.307309 CGGTTGTGCTTTCGCGAGA 61.307 57.895 9.59 3.35 39.65 4.04
36 37 1.493311 GGTTGTGCTTTCGCGAGAG 59.507 57.895 21.42 21.42 43.69 3.20
37 38 1.493311 GTTGTGCTTTCGCGAGAGG 59.507 57.895 25.84 13.55 43.69 3.69
38 39 2.317609 TTGTGCTTTCGCGAGAGGC 61.318 57.895 25.84 21.76 43.69 4.70
39 40 2.738521 GTGCTTTCGCGAGAGGCA 60.739 61.111 25.84 23.78 44.13 4.75
40 41 2.738521 TGCTTTCGCGAGAGGCAC 60.739 61.111 25.84 11.56 42.51 5.01
41 42 3.843240 GCTTTCGCGAGAGGCACG 61.843 66.667 25.84 3.72 43.84 5.34
42 43 3.181967 CTTTCGCGAGAGGCACGG 61.182 66.667 18.35 0.00 43.84 4.94
43 44 4.735132 TTTCGCGAGAGGCACGGG 62.735 66.667 9.59 0.00 43.84 5.28
55 56 3.423154 CACGGGCGTGCCTCTTTC 61.423 66.667 11.25 0.00 39.39 2.62
58 59 4.388499 GGGCGTGCCTCTTTCGGA 62.388 66.667 11.25 0.00 36.10 4.55
59 60 2.358247 GGCGTGCCTCTTTCGGAA 60.358 61.111 2.98 0.00 0.00 4.30
60 61 1.964373 GGCGTGCCTCTTTCGGAAA 60.964 57.895 2.98 2.78 0.00 3.13
61 62 1.497722 GCGTGCCTCTTTCGGAAAG 59.502 57.895 21.64 21.64 39.88 2.62
62 63 0.949105 GCGTGCCTCTTTCGGAAAGA 60.949 55.000 26.61 26.61 44.82 2.52
63 64 1.508632 CGTGCCTCTTTCGGAAAGAA 58.491 50.000 27.69 14.84 46.13 2.52
64 65 1.871039 CGTGCCTCTTTCGGAAAGAAA 59.129 47.619 27.69 16.64 46.13 2.52
65 66 2.289547 CGTGCCTCTTTCGGAAAGAAAA 59.710 45.455 27.69 16.35 46.98 2.29
66 67 3.242936 CGTGCCTCTTTCGGAAAGAAAAA 60.243 43.478 27.69 16.06 46.98 1.94
378 380 1.150536 TTTTGCTTCCGCCAGAGGT 59.849 52.632 0.00 0.00 34.43 3.85
503 518 1.593933 GCACGGTTGTACTTTCGTCAA 59.406 47.619 0.00 0.00 33.31 3.18
556 571 1.018910 AAACCCGTGTTTCTGGTTCG 58.981 50.000 0.00 0.00 40.68 3.95
732 751 6.655425 CGGATCTAAGAAAAAGGGAAAACTCT 59.345 38.462 0.00 0.00 0.00 3.24
733 752 7.361286 CGGATCTAAGAAAAAGGGAAAACTCTG 60.361 40.741 0.00 0.00 0.00 3.35
734 753 6.635030 TCTAAGAAAAAGGGAAAACTCTGC 57.365 37.500 0.00 0.00 0.00 4.26
736 755 3.551846 AGAAAAAGGGAAAACTCTGCGA 58.448 40.909 0.00 0.00 0.00 5.10
760 779 3.672447 CAGGTGGCGCACATGCAA 61.672 61.111 10.83 0.00 39.20 4.08
899 918 5.046087 ACGAGTAGTAAAATAACTGGGCCTT 60.046 40.000 4.53 0.00 0.00 4.35
902 921 7.550196 CGAGTAGTAAAATAACTGGGCCTTTAA 59.450 37.037 4.53 0.00 0.00 1.52
929 948 4.569180 CGGAGCGGCCCAATCCAT 62.569 66.667 14.20 0.00 32.31 3.41
952 981 7.448469 CCATCAACTCTTTCTTCTCCCTAAAAA 59.552 37.037 0.00 0.00 0.00 1.94
953 982 8.510505 CATCAACTCTTTCTTCTCCCTAAAAAG 58.489 37.037 0.00 0.00 0.00 2.27
957 986 9.475620 AACTCTTTCTTCTCCCTAAAAAGAAAA 57.524 29.630 9.86 3.00 44.17 2.29
1054 1087 0.533032 CTCGAACCTGGAGGAGGAAC 59.467 60.000 0.00 0.00 46.33 3.62
1316 1363 3.371063 GACTCTGGTGACGCGGGA 61.371 66.667 12.47 0.00 0.00 5.14
1349 1396 1.918800 GGTGCCCCACTACTGGTCT 60.919 63.158 0.00 0.00 35.46 3.85
1403 1450 2.125912 GATGCCGTGCTCGTGTCT 60.126 61.111 7.47 0.00 35.01 3.41
1427 1474 3.661648 ACGGGGATGCTTGGGCTT 61.662 61.111 0.00 0.00 39.59 4.35
1519 1566 6.036470 GCATAGCACCCTAAATTTCAAACTC 58.964 40.000 0.00 0.00 0.00 3.01
1521 1568 7.067008 GCATAGCACCCTAAATTTCAAACTCTA 59.933 37.037 0.00 0.00 0.00 2.43
1547 1594 3.569194 TTAGGCTGGAACTTGTGTTGA 57.431 42.857 0.00 0.00 36.39 3.18
1557 1604 6.929625 TGGAACTTGTGTTGAGAATTTGAAA 58.070 32.000 0.00 0.00 36.39 2.69
1558 1605 6.811170 TGGAACTTGTGTTGAGAATTTGAAAC 59.189 34.615 0.00 0.00 36.39 2.78
1578 1703 8.951787 TGAAACTGTAGTTAACATGTTAGTGT 57.048 30.769 17.36 8.63 37.50 3.55
1686 1831 7.378728 GCTAATTGTCTTTTCTTTAGTTTGCGT 59.621 33.333 0.00 0.00 0.00 5.24
1824 1970 0.743097 GAATCCCAAGGCATGCTCAC 59.257 55.000 18.92 0.18 0.00 3.51
2168 2350 3.901844 TGTAAGGTACTATGGGCCAGATC 59.098 47.826 13.78 0.85 38.49 2.75
2169 2351 3.352611 AAGGTACTATGGGCCAGATCT 57.647 47.619 13.78 0.00 38.49 2.75
2248 2430 9.049523 TCATTGCAGAATATAGTGATTGAAGAC 57.950 33.333 0.00 0.00 0.00 3.01
2402 2588 6.136155 ACCAGTTTCCCATATTTATCCTTGG 58.864 40.000 0.00 0.00 0.00 3.61
2749 3008 7.951530 ACTGAAAATGCCATTTGAGTAAAAG 57.048 32.000 2.91 0.00 31.77 2.27
2750 3009 7.725251 ACTGAAAATGCCATTTGAGTAAAAGA 58.275 30.769 2.91 0.00 31.77 2.52
2751 3010 8.203485 ACTGAAAATGCCATTTGAGTAAAAGAA 58.797 29.630 2.91 0.00 31.77 2.52
2915 3192 6.477669 AATAATGATATCAACGCTGCTCTG 57.522 37.500 9.99 0.00 0.00 3.35
3000 3277 1.757682 TGCGAAAAACCCAGACTGTT 58.242 45.000 0.93 0.00 0.00 3.16
3006 3283 6.207810 TGCGAAAAACCCAGACTGTTAAATAT 59.792 34.615 0.93 0.00 0.00 1.28
3186 3463 9.308318 GACTATAACTCTCTGAAGGAAAATGAC 57.692 37.037 0.00 0.00 0.00 3.06
3209 3486 9.820725 TGACATCATTTTGTTTTCAGATTTCTT 57.179 25.926 0.00 0.00 0.00 2.52
3416 3694 4.823442 TGGTGTTGATGAGGATGAATATGC 59.177 41.667 0.00 0.00 0.00 3.14
3640 3918 6.388689 TGACCCCTTGTTATTGTATAGTGGAT 59.611 38.462 0.00 0.00 0.00 3.41
3986 4284 4.291540 TGTCTTCTCACATGTTTTGCAC 57.708 40.909 0.00 0.00 0.00 4.57
4003 4301 0.823460 CACCTGTTGTTTTGGGCTGT 59.177 50.000 0.00 0.00 0.00 4.40
4178 4480 5.109210 TGAACTTATCATGGTCTTACTGCG 58.891 41.667 0.00 0.00 31.50 5.18
4205 4507 7.157347 CACTATTTATCCTGCAGCTATTCTCA 58.843 38.462 8.66 0.00 0.00 3.27
4259 4561 2.697654 CTTCTGAAGGAAGGCAGACTG 58.302 52.381 9.57 0.00 45.55 3.51
4292 4594 4.349342 CCTCATCTATACTCAAAGGGCCTT 59.651 45.833 14.48 14.48 0.00 4.35
4444 4862 7.571080 TCGGTACTGGTTGTTTCTTATTTTT 57.429 32.000 0.85 0.00 0.00 1.94
4451 4869 9.290988 ACTGGTTGTTTCTTATTTTTGGTTTTT 57.709 25.926 0.00 0.00 0.00 1.94
4692 5111 1.002868 CCTTAGGCACAGCACAGCT 60.003 57.895 0.00 0.00 40.77 4.24
4719 5138 2.434884 CTTCGTCGGTGGCATGCT 60.435 61.111 18.92 0.00 0.00 3.79
4759 5178 6.211785 TCTTGTTTTGGAGGTAAACAGGTTTT 59.788 34.615 2.37 0.00 43.85 2.43
4797 5216 5.018539 ACGTGGCATAATCTTAACTGCTA 57.981 39.130 0.00 0.00 35.03 3.49
4799 5218 5.696724 ACGTGGCATAATCTTAACTGCTATC 59.303 40.000 0.00 0.00 35.03 2.08
4815 5234 4.234574 TGCTATCGGTGATGCTAAATACG 58.765 43.478 0.00 0.00 0.00 3.06
4854 5273 2.161211 GCAAGGAGTTGATGCTGAGTTC 59.839 50.000 0.00 0.00 35.46 3.01
4856 5275 3.996921 AGGAGTTGATGCTGAGTTCAT 57.003 42.857 0.00 0.00 0.00 2.57
4949 5370 7.222611 TGCTGAAAGTTCAAAAGCTTATGTTTC 59.777 33.333 0.00 4.77 36.64 2.78
4950 5371 7.222611 GCTGAAAGTTCAAAAGCTTATGTTTCA 59.777 33.333 0.00 8.85 36.64 2.69
4951 5372 8.406172 TGAAAGTTCAAAAGCTTATGTTTCAC 57.594 30.769 0.00 0.00 33.55 3.18
4952 5373 7.491048 TGAAAGTTCAAAAGCTTATGTTTCACC 59.509 33.333 0.00 0.00 33.55 4.02
4953 5374 6.463995 AGTTCAAAAGCTTATGTTTCACCA 57.536 33.333 0.00 0.00 0.00 4.17
4954 5375 6.273071 AGTTCAAAAGCTTATGTTTCACCAC 58.727 36.000 0.00 0.00 0.00 4.16
4955 5376 6.096846 AGTTCAAAAGCTTATGTTTCACCACT 59.903 34.615 0.00 0.00 0.00 4.00
4956 5377 6.463995 TCAAAAGCTTATGTTTCACCACTT 57.536 33.333 0.00 0.00 0.00 3.16
4957 5378 6.872920 TCAAAAGCTTATGTTTCACCACTTT 58.127 32.000 0.00 0.00 0.00 2.66
4958 5379 8.001881 TCAAAAGCTTATGTTTCACCACTTTA 57.998 30.769 0.00 0.00 0.00 1.85
4959 5380 8.637986 TCAAAAGCTTATGTTTCACCACTTTAT 58.362 29.630 0.00 0.00 0.00 1.40
5004 5437 4.811908 AGACTAAAGGCTCGAGTTTCTTC 58.188 43.478 15.13 7.53 0.00 2.87
5018 5456 0.756294 TTCTTCTTGACAGGGTGCGA 59.244 50.000 0.00 0.00 0.00 5.10
5036 5474 3.174375 GCGAAAAGTCAATCCATTGCTC 58.826 45.455 0.00 0.00 37.68 4.26
5188 5628 0.878523 TTTGAAGTCGCGGTGTCCAG 60.879 55.000 6.13 0.00 0.00 3.86
5271 5711 3.947910 AACATACGGGAAGACTTCGAA 57.052 42.857 9.08 0.00 0.00 3.71
5467 5907 2.360350 ATGCAGGCCGTCTGTTGG 60.360 61.111 1.18 0.00 45.08 3.77
5493 5933 1.884926 GCAAGAGAAGGGGATCGCG 60.885 63.158 0.00 0.00 0.00 5.87
5616 6056 0.589229 CCGTGATCTACTGCGACGAC 60.589 60.000 0.00 0.00 31.71 4.34
5622 6062 1.297012 CTACTGCGACGACGAGAGC 60.297 63.158 12.29 4.38 42.66 4.09
5700 6141 4.380841 TGCTACTGACGGTTAATGGTAG 57.619 45.455 0.00 0.00 0.00 3.18
5718 6167 1.222661 GGGGTTCATGGGGACGTAC 59.777 63.158 0.00 0.00 0.00 3.67
5725 6174 2.100197 TCATGGGGACGTACTCTGAAG 58.900 52.381 0.00 0.00 0.00 3.02
5854 6324 4.458989 TGCACATTTACCAGTTTGATCTCC 59.541 41.667 0.00 0.00 0.00 3.71
5880 6350 4.900154 CGAGAGGCCTCTGAACAC 57.100 61.111 39.86 22.86 40.61 3.32
5882 6352 1.446966 GAGAGGCCTCTGAACACGC 60.447 63.158 39.86 19.36 40.61 5.34
5883 6353 2.811317 GAGGCCTCTGAACACGCG 60.811 66.667 26.25 3.53 0.00 6.01
5912 6406 1.634753 CGACGACTGAGCATGCATG 59.365 57.895 22.70 22.70 0.00 4.06
5928 6426 4.625972 TGCATGCATCAATGAAGTAGTG 57.374 40.909 18.46 0.00 0.00 2.74
6009 6507 0.366871 CTCGTCAATCAAGCGGTTCG 59.633 55.000 0.00 0.00 0.00 3.95
6014 6512 2.284417 GTCAATCAAGCGGTTCGTATCC 59.716 50.000 0.00 0.00 0.00 2.59
6075 6574 0.391597 TCCTGTCCTTGTTCACCGTC 59.608 55.000 0.00 0.00 0.00 4.79
6116 6619 4.883083 TGACGGAAATCTATGGCTGTATC 58.117 43.478 0.00 0.00 0.00 2.24
6117 6620 4.588951 TGACGGAAATCTATGGCTGTATCT 59.411 41.667 0.00 0.00 0.00 1.98
6118 6621 4.887748 ACGGAAATCTATGGCTGTATCTG 58.112 43.478 0.00 0.00 0.00 2.90
6119 6622 4.345257 ACGGAAATCTATGGCTGTATCTGT 59.655 41.667 0.00 0.00 0.00 3.41
6120 6623 5.538813 ACGGAAATCTATGGCTGTATCTGTA 59.461 40.000 0.00 0.00 0.00 2.74
6121 6624 6.211584 ACGGAAATCTATGGCTGTATCTGTAT 59.788 38.462 0.00 0.00 0.00 2.29
6122 6625 7.396339 ACGGAAATCTATGGCTGTATCTGTATA 59.604 37.037 0.00 0.00 0.00 1.47
6123 6626 8.417106 CGGAAATCTATGGCTGTATCTGTATAT 58.583 37.037 0.00 0.00 0.00 0.86
6124 6627 9.757227 GGAAATCTATGGCTGTATCTGTATATC 57.243 37.037 0.00 0.00 0.00 1.63
6128 6631 7.877433 TCTATGGCTGTATCTGTATATCCTCT 58.123 38.462 0.00 0.00 0.00 3.69
6190 6693 7.326305 GCGATCGATTCTACTTATAGCTTTTCA 59.674 37.037 21.57 0.00 0.00 2.69
6194 6697 8.350722 TCGATTCTACTTATAGCTTTTCATCGT 58.649 33.333 0.00 0.00 0.00 3.73
6195 6698 8.420945 CGATTCTACTTATAGCTTTTCATCGTG 58.579 37.037 0.00 0.00 0.00 4.35
6200 6703 1.448985 TAGCTTTTCATCGTGCCACC 58.551 50.000 0.00 0.00 0.00 4.61
6276 6843 1.414919 AGGCACAAGTGAAGTACGGAA 59.585 47.619 4.04 0.00 0.00 4.30
6313 6880 0.946221 ACAGCTCGTTGTACTGCAGC 60.946 55.000 15.27 0.00 34.72 5.25
6331 6902 3.429141 CAGCCAGAGCCAGCGTTG 61.429 66.667 0.00 0.00 41.25 4.10
6404 6986 0.773644 ATGCAGAACCTCCCACTTGT 59.226 50.000 0.00 0.00 0.00 3.16
6411 6993 3.138468 AGAACCTCCCACTTGTAGCTTTT 59.862 43.478 0.00 0.00 0.00 2.27
6462 7109 3.515602 GGAGCTTATCCCATCCATTGT 57.484 47.619 0.00 0.00 43.01 2.71
6466 7113 5.833131 GGAGCTTATCCCATCCATTGTAAAA 59.167 40.000 0.00 0.00 43.01 1.52
6474 7121 5.659079 TCCCATCCATTGTAAAATTACCACC 59.341 40.000 1.13 0.00 32.72 4.61
6475 7122 5.163353 CCCATCCATTGTAAAATTACCACCC 60.163 44.000 1.13 0.00 32.72 4.61
6551 7199 4.214119 GCACAACAAAGAGTAGAAGCATCA 59.786 41.667 0.00 0.00 0.00 3.07
6552 7200 5.616424 GCACAACAAAGAGTAGAAGCATCAG 60.616 44.000 0.00 0.00 0.00 2.90
6553 7201 4.453819 ACAACAAAGAGTAGAAGCATCAGC 59.546 41.667 0.00 0.00 42.56 4.26
6554 7202 4.277515 ACAAAGAGTAGAAGCATCAGCA 57.722 40.909 0.00 0.00 45.49 4.41
6555 7203 4.645535 ACAAAGAGTAGAAGCATCAGCAA 58.354 39.130 0.00 0.00 45.49 3.91
6556 7204 5.251764 ACAAAGAGTAGAAGCATCAGCAAT 58.748 37.500 0.00 0.00 45.49 3.56
6557 7205 5.353678 ACAAAGAGTAGAAGCATCAGCAATC 59.646 40.000 0.00 0.00 45.49 2.67
6558 7206 3.715495 AGAGTAGAAGCATCAGCAATCG 58.285 45.455 0.00 0.00 45.49 3.34
6559 7207 2.799412 GAGTAGAAGCATCAGCAATCGG 59.201 50.000 0.00 0.00 45.49 4.18
6560 7208 2.432146 AGTAGAAGCATCAGCAATCGGA 59.568 45.455 0.00 0.00 45.49 4.55
6561 7209 1.950828 AGAAGCATCAGCAATCGGAG 58.049 50.000 0.00 0.00 45.49 4.63
6562 7210 0.942962 GAAGCATCAGCAATCGGAGG 59.057 55.000 0.00 0.00 45.49 4.30
6563 7211 0.465097 AAGCATCAGCAATCGGAGGG 60.465 55.000 0.00 0.00 45.49 4.30
6564 7212 1.146930 GCATCAGCAATCGGAGGGA 59.853 57.895 0.00 0.00 41.58 4.20
6565 7213 0.883814 GCATCAGCAATCGGAGGGAG 60.884 60.000 0.00 0.00 41.58 4.30
6566 7214 0.883814 CATCAGCAATCGGAGGGAGC 60.884 60.000 0.00 0.00 0.00 4.70
6567 7215 1.340399 ATCAGCAATCGGAGGGAGCA 61.340 55.000 0.00 0.00 0.00 4.26
6568 7216 1.078214 CAGCAATCGGAGGGAGCAA 60.078 57.895 0.00 0.00 0.00 3.91
6569 7217 0.677731 CAGCAATCGGAGGGAGCAAA 60.678 55.000 0.00 0.00 0.00 3.68
6570 7218 0.393537 AGCAATCGGAGGGAGCAAAG 60.394 55.000 0.00 0.00 0.00 2.77
6571 7219 0.392998 GCAATCGGAGGGAGCAAAGA 60.393 55.000 0.00 0.00 0.00 2.52
6572 7220 1.950484 GCAATCGGAGGGAGCAAAGAA 60.950 52.381 0.00 0.00 0.00 2.52
6573 7221 2.436417 CAATCGGAGGGAGCAAAGAAA 58.564 47.619 0.00 0.00 0.00 2.52
6574 7222 2.409948 ATCGGAGGGAGCAAAGAAAG 57.590 50.000 0.00 0.00 0.00 2.62
6575 7223 1.056660 TCGGAGGGAGCAAAGAAAGT 58.943 50.000 0.00 0.00 0.00 2.66
6576 7224 1.160137 CGGAGGGAGCAAAGAAAGTG 58.840 55.000 0.00 0.00 0.00 3.16
6577 7225 0.884514 GGAGGGAGCAAAGAAAGTGC 59.115 55.000 0.00 0.00 42.55 4.40
6578 7226 1.609208 GAGGGAGCAAAGAAAGTGCA 58.391 50.000 0.00 0.00 44.74 4.57
6579 7227 2.165998 GAGGGAGCAAAGAAAGTGCAT 58.834 47.619 0.00 0.00 44.74 3.96
6580 7228 1.891150 AGGGAGCAAAGAAAGTGCATG 59.109 47.619 0.00 0.00 44.74 4.06
6581 7229 1.615392 GGGAGCAAAGAAAGTGCATGT 59.385 47.619 0.00 0.00 44.74 3.21
6582 7230 2.608752 GGGAGCAAAGAAAGTGCATGTG 60.609 50.000 0.00 0.00 44.74 3.21
6583 7231 2.056577 GAGCAAAGAAAGTGCATGTGC 58.943 47.619 0.00 0.00 44.74 4.57
6593 7241 2.557805 GCATGTGCACGACTGTGG 59.442 61.111 13.13 0.00 46.51 4.17
6594 7242 2.557805 CATGTGCACGACTGTGGC 59.442 61.111 13.13 0.00 46.51 5.01
6595 7243 2.110835 ATGTGCACGACTGTGGCA 59.889 55.556 13.13 0.00 46.51 4.92
6596 7244 2.253758 ATGTGCACGACTGTGGCAC 61.254 57.895 11.55 11.55 46.51 5.01
6597 7245 2.894879 GTGCACGACTGTGGCACA 60.895 61.111 20.76 20.76 46.51 4.57
6598 7246 2.124942 TGCACGACTGTGGCACAA 60.125 55.556 22.31 1.28 46.51 3.33
6599 7247 1.525765 TGCACGACTGTGGCACAAT 60.526 52.632 22.31 12.51 46.51 2.71
6600 7248 1.081906 GCACGACTGTGGCACAATG 60.082 57.895 22.31 17.07 46.51 2.82
6601 7249 1.081906 CACGACTGTGGCACAATGC 60.082 57.895 22.31 12.24 44.16 3.56
6612 7260 1.081094 GCACAATGCAATGAAAGGCC 58.919 50.000 9.20 0.00 44.26 5.19
6613 7261 1.352114 CACAATGCAATGAAAGGCCG 58.648 50.000 9.20 0.00 0.00 6.13
6614 7262 0.968405 ACAATGCAATGAAAGGCCGT 59.032 45.000 9.20 0.00 0.00 5.68
6615 7263 1.337074 ACAATGCAATGAAAGGCCGTG 60.337 47.619 9.20 0.00 0.00 4.94
6616 7264 0.390209 AATGCAATGAAAGGCCGTGC 60.390 50.000 0.00 0.00 35.75 5.34
6617 7265 2.198969 TGCAATGAAAGGCCGTGCA 61.199 52.632 0.21 0.21 42.62 4.57
6618 7266 1.216178 GCAATGAAAGGCCGTGCAT 59.784 52.632 6.28 6.28 35.28 3.96
6619 7267 0.803380 GCAATGAAAGGCCGTGCATC 60.803 55.000 13.11 0.00 35.28 3.91
6620 7268 0.179129 CAATGAAAGGCCGTGCATCC 60.179 55.000 13.11 0.00 0.00 3.51
6621 7269 0.323725 AATGAAAGGCCGTGCATCCT 60.324 50.000 13.11 0.00 0.00 3.24
6622 7270 0.546122 ATGAAAGGCCGTGCATCCTA 59.454 50.000 6.28 0.00 31.24 2.94
6623 7271 0.392461 TGAAAGGCCGTGCATCCTAC 60.392 55.000 0.00 4.84 31.24 3.18
6624 7272 1.077716 AAAGGCCGTGCATCCTACC 60.078 57.895 0.00 0.00 31.24 3.18
6625 7273 2.552231 AAAGGCCGTGCATCCTACCC 62.552 60.000 0.00 0.00 31.24 3.69
6626 7274 3.792736 GGCCGTGCATCCTACCCA 61.793 66.667 0.00 0.00 0.00 4.51
6627 7275 2.510906 GCCGTGCATCCTACCCAT 59.489 61.111 0.00 0.00 0.00 4.00
6628 7276 1.893808 GCCGTGCATCCTACCCATG 60.894 63.158 0.00 0.00 0.00 3.66
6629 7277 1.526887 CCGTGCATCCTACCCATGT 59.473 57.895 0.00 0.00 0.00 3.21
6630 7278 0.815213 CCGTGCATCCTACCCATGTG 60.815 60.000 0.00 0.00 0.00 3.21
6631 7279 0.107703 CGTGCATCCTACCCATGTGT 60.108 55.000 0.00 0.00 0.00 3.72
6632 7280 1.668419 GTGCATCCTACCCATGTGTC 58.332 55.000 0.00 0.00 0.00 3.67
6633 7281 0.177836 TGCATCCTACCCATGTGTCG 59.822 55.000 0.00 0.00 0.00 4.35
6634 7282 1.160329 GCATCCTACCCATGTGTCGC 61.160 60.000 0.00 0.00 0.00 5.19
6635 7283 0.532862 CATCCTACCCATGTGTCGCC 60.533 60.000 0.00 0.00 0.00 5.54
6636 7284 0.980754 ATCCTACCCATGTGTCGCCA 60.981 55.000 0.00 0.00 0.00 5.69
6637 7285 0.980754 TCCTACCCATGTGTCGCCAT 60.981 55.000 0.00 0.00 0.00 4.40
6638 7286 0.815213 CCTACCCATGTGTCGCCATG 60.815 60.000 0.00 0.00 41.52 3.66
6642 7290 4.299756 CATGTGTCGCCATGGTGA 57.700 55.556 24.20 24.20 38.83 4.02
6643 7291 2.553962 CATGTGTCGCCATGGTGAA 58.446 52.632 29.11 14.93 38.83 3.18
6644 7292 0.448990 CATGTGTCGCCATGGTGAAG 59.551 55.000 29.11 12.96 38.83 3.02
6645 7293 0.677731 ATGTGTCGCCATGGTGAAGG 60.678 55.000 29.11 6.09 36.33 3.46
6646 7294 2.040544 GTGTCGCCATGGTGAAGGG 61.041 63.158 29.11 2.99 36.33 3.95
6647 7295 2.438434 GTCGCCATGGTGAAGGGG 60.438 66.667 29.11 2.10 36.33 4.79
6648 7296 2.609299 TCGCCATGGTGAAGGGGA 60.609 61.111 25.67 2.61 43.58 4.81
6649 7297 2.124570 CGCCATGGTGAAGGGGAG 60.125 66.667 21.19 0.00 40.00 4.30
6650 7298 2.971598 CGCCATGGTGAAGGGGAGT 61.972 63.158 21.19 0.00 40.00 3.85
6651 7299 1.077429 GCCATGGTGAAGGGGAGTC 60.077 63.158 14.67 0.00 0.00 3.36
6652 7300 1.852157 GCCATGGTGAAGGGGAGTCA 61.852 60.000 14.67 0.00 0.00 3.41
6653 7301 0.698238 CCATGGTGAAGGGGAGTCAA 59.302 55.000 2.57 0.00 0.00 3.18
6654 7302 1.075374 CCATGGTGAAGGGGAGTCAAA 59.925 52.381 2.57 0.00 0.00 2.69
6655 7303 2.490718 CCATGGTGAAGGGGAGTCAAAA 60.491 50.000 2.57 0.00 0.00 2.44
6656 7304 3.230134 CATGGTGAAGGGGAGTCAAAAA 58.770 45.455 0.00 0.00 0.00 1.94
6676 7324 2.278596 CTGCAAGCCATGATGCGC 60.279 61.111 0.00 0.00 45.47 6.09
6677 7325 3.768185 CTGCAAGCCATGATGCGCC 62.768 63.158 4.18 0.00 45.47 6.53
6678 7326 4.918129 GCAAGCCATGATGCGCCG 62.918 66.667 4.18 0.00 36.02 6.46
6679 7327 4.918129 CAAGCCATGATGCGCCGC 62.918 66.667 4.18 0.00 36.02 6.53
6693 7341 3.505184 CCGCGGCCGCTGTTTAAT 61.505 61.111 43.60 0.00 39.32 1.40
6694 7342 2.022762 CGCGGCCGCTGTTTAATC 59.977 61.111 43.60 15.84 39.32 1.75
6695 7343 2.745785 CGCGGCCGCTGTTTAATCA 61.746 57.895 43.60 0.00 39.32 2.57
6696 7344 1.504446 GCGGCCGCTGTTTAATCAA 59.496 52.632 41.71 0.00 38.26 2.57
6697 7345 0.523335 GCGGCCGCTGTTTAATCAAG 60.523 55.000 41.71 0.75 38.26 3.02
6698 7346 0.523335 CGGCCGCTGTTTAATCAAGC 60.523 55.000 14.67 0.00 0.00 4.01
6699 7347 0.179137 GGCCGCTGTTTAATCAAGCC 60.179 55.000 0.00 6.28 0.00 4.35
6700 7348 0.523335 GCCGCTGTTTAATCAAGCCG 60.523 55.000 0.00 0.00 0.00 5.52
6701 7349 1.083489 CCGCTGTTTAATCAAGCCGA 58.917 50.000 0.00 0.00 0.00 5.54
6702 7350 1.466950 CCGCTGTTTAATCAAGCCGAA 59.533 47.619 0.00 0.00 0.00 4.30
6703 7351 2.476185 CCGCTGTTTAATCAAGCCGAAG 60.476 50.000 0.00 0.00 0.00 3.79
6704 7352 2.519963 GCTGTTTAATCAAGCCGAAGC 58.480 47.619 0.00 0.00 40.32 3.86
6720 7368 2.774774 GCTGAAAGAGCTGCGACG 59.225 61.111 0.00 0.00 45.21 5.12
6721 7369 2.734673 GCTGAAAGAGCTGCGACGG 61.735 63.158 0.00 0.00 45.21 4.79
6722 7370 2.048222 TGAAAGAGCTGCGACGGG 60.048 61.111 0.00 0.00 0.00 5.28
6723 7371 2.048127 GAAAGAGCTGCGACGGGT 60.048 61.111 0.00 0.00 0.00 5.28
6724 7372 1.668151 GAAAGAGCTGCGACGGGTT 60.668 57.895 0.00 0.00 0.00 4.11
6725 7373 1.901650 GAAAGAGCTGCGACGGGTTG 61.902 60.000 0.00 0.00 0.00 3.77
6726 7374 3.883744 AAGAGCTGCGACGGGTTGG 62.884 63.158 0.00 0.00 0.00 3.77
6792 7440 2.951475 TTTTGCTGGAACGGGCGACT 62.951 55.000 0.00 0.00 33.56 4.18
6796 7444 3.234630 CTGGAACGGGCGACTGGAA 62.235 63.158 0.04 0.00 42.76 3.53
6822 7470 0.038709 TAACCGTGGCAGCAAAATGC 60.039 50.000 0.00 0.00 45.46 3.56
6837 7485 1.577328 AATGCTCGAACCAACAGCCG 61.577 55.000 0.00 0.00 31.68 5.52
6840 7488 4.287781 TCGAACCAACAGCCGCGA 62.288 61.111 8.23 0.00 0.00 5.87
6878 7534 1.333308 TGCGTCAACCAGTCATTGTTG 59.667 47.619 0.00 0.00 42.46 3.33
6888 7544 3.181477 CCAGTCATTGTTGTTGCTGGAAA 60.181 43.478 2.51 0.00 44.40 3.13
6914 7570 2.041701 AGCATTTTTGCTGGAACCAGT 58.958 42.857 19.97 0.00 44.44 4.00
6919 7575 3.731652 TTTTGCTGGAACCAGTGATTG 57.268 42.857 19.97 0.00 45.24 2.67
6925 7581 0.819582 GGAACCAGTGATTGCCATGG 59.180 55.000 7.63 7.63 38.83 3.66
6928 7584 3.554934 GAACCAGTGATTGCCATGGATA 58.445 45.455 18.40 1.58 36.62 2.59
6938 7594 3.385193 TGCCATGGATACGAGTACATG 57.615 47.619 18.40 9.19 40.17 3.21
6939 7595 2.698274 TGCCATGGATACGAGTACATGT 59.302 45.455 18.40 2.69 39.14 3.21
6940 7596 3.243737 TGCCATGGATACGAGTACATGTC 60.244 47.826 18.40 4.37 39.14 3.06
6978 7637 1.464219 GGGATTGCAATTTTTGGTGCG 59.536 47.619 14.33 0.00 0.00 5.34
6980 7639 2.142319 GATTGCAATTTTTGGTGCGGT 58.858 42.857 14.33 0.00 0.00 5.68
6983 7642 1.281566 GCAATTTTTGGTGCGGTCGG 61.282 55.000 0.00 0.00 0.00 4.79
6985 7644 1.460273 AATTTTTGGTGCGGTCGGCT 61.460 50.000 3.87 0.00 44.05 5.52
7005 7667 4.540824 GCTAGAAAGTTTGCTTCAACCAG 58.459 43.478 0.00 0.00 33.01 4.00
7006 7668 4.275936 GCTAGAAAGTTTGCTTCAACCAGA 59.724 41.667 0.00 0.00 33.01 3.86
7010 7672 5.127682 AGAAAGTTTGCTTCAACCAGACATT 59.872 36.000 0.00 0.00 33.01 2.71
7011 7674 6.321181 AGAAAGTTTGCTTCAACCAGACATTA 59.679 34.615 0.00 0.00 33.01 1.90
7020 7683 6.128742 GCTTCAACCAGACATTATTTTTGCTG 60.129 38.462 0.00 0.00 0.00 4.41
7062 7725 4.932799 GCTACCACCTTGTTTTGTTTTGTT 59.067 37.500 0.00 0.00 0.00 2.83
7066 7729 6.499172 ACCACCTTGTTTTGTTTTGTTTTTG 58.501 32.000 0.00 0.00 0.00 2.44
7071 7734 5.113502 TGTTTTGTTTTGTTTTTGGCTGG 57.886 34.783 0.00 0.00 0.00 4.85
7073 7736 5.049129 TGTTTTGTTTTGTTTTTGGCTGGAG 60.049 36.000 0.00 0.00 0.00 3.86
7074 7737 3.971245 TGTTTTGTTTTTGGCTGGAGT 57.029 38.095 0.00 0.00 0.00 3.85
7095 7759 4.459337 AGTCAGCCTAAATTTTGCTACCAC 59.541 41.667 12.81 10.41 33.16 4.16
7100 7764 3.754323 CCTAAATTTTGCTACCACCGTCA 59.246 43.478 0.00 0.00 0.00 4.35
7104 7768 2.552599 TTTGCTACCACCGTCATTCA 57.447 45.000 0.00 0.00 0.00 2.57
7118 7782 4.549458 CGTCATTCAATTTTGCTGGAACT 58.451 39.130 0.00 0.00 0.00 3.01
7128 7792 2.818130 TGCTGGAACTGGCATTTTTC 57.182 45.000 0.00 0.00 33.76 2.29
7129 7793 1.344114 TGCTGGAACTGGCATTTTTCC 59.656 47.619 13.22 13.22 39.51 3.13
7130 7795 1.669795 GCTGGAACTGGCATTTTTCCG 60.670 52.381 14.50 11.34 41.61 4.30
7137 7802 0.039617 TGGCATTTTTCCGTGCTTCG 60.040 50.000 0.00 0.00 41.04 3.79
7143 7808 3.536158 TTTTTCCGTGCTTCGATCAAG 57.464 42.857 3.69 0.00 42.86 3.02
7150 7815 2.345641 CGTGCTTCGATCAAGTAACTGG 59.654 50.000 0.00 0.00 42.86 4.00
7152 7817 4.184629 GTGCTTCGATCAAGTAACTGGAT 58.815 43.478 0.00 0.00 34.13 3.41
7177 7842 7.974243 ATTTTTGTTGCTTTCAATTTCTTGC 57.026 28.000 0.00 0.00 34.29 4.01
7178 7843 6.740411 TTTTGTTGCTTTCAATTTCTTGCT 57.260 29.167 0.00 0.00 34.29 3.91
7179 7844 5.721876 TTGTTGCTTTCAATTTCTTGCTG 57.278 34.783 0.00 0.00 34.29 4.41
7180 7845 4.121317 TGTTGCTTTCAATTTCTTGCTGG 58.879 39.130 0.00 0.00 34.29 4.85
7181 7846 4.141981 TGTTGCTTTCAATTTCTTGCTGGA 60.142 37.500 0.00 0.00 34.29 3.86
7182 7847 4.877378 TGCTTTCAATTTCTTGCTGGAT 57.123 36.364 0.00 0.00 32.11 3.41
7183 7848 4.562082 TGCTTTCAATTTCTTGCTGGATG 58.438 39.130 0.00 0.00 32.11 3.51
7184 7849 4.281435 TGCTTTCAATTTCTTGCTGGATGA 59.719 37.500 0.00 0.00 32.11 2.92
7187 7852 2.756760 TCAATTTCTTGCTGGATGAGGC 59.243 45.455 0.00 0.00 32.11 4.70
7188 7853 1.772836 ATTTCTTGCTGGATGAGGCC 58.227 50.000 0.00 0.00 0.00 5.19
7189 7854 0.405198 TTTCTTGCTGGATGAGGCCA 59.595 50.000 5.01 0.00 36.30 5.36
7190 7855 0.405198 TTCTTGCTGGATGAGGCCAA 59.595 50.000 5.01 0.00 37.52 4.52
7191 7856 0.322816 TCTTGCTGGATGAGGCCAAC 60.323 55.000 5.01 0.00 37.52 3.77
7192 7857 0.323178 CTTGCTGGATGAGGCCAACT 60.323 55.000 5.01 0.00 37.52 3.16
7193 7858 0.112995 TTGCTGGATGAGGCCAACTT 59.887 50.000 5.01 0.00 37.52 2.66
7194 7859 0.609957 TGCTGGATGAGGCCAACTTG 60.610 55.000 5.01 0.00 37.52 3.16
7195 7860 0.610232 GCTGGATGAGGCCAACTTGT 60.610 55.000 5.01 0.00 37.52 3.16
7196 7861 1.915141 CTGGATGAGGCCAACTTGTT 58.085 50.000 5.01 0.00 37.52 2.83
7197 7862 2.242043 CTGGATGAGGCCAACTTGTTT 58.758 47.619 5.01 0.00 37.52 2.83
7198 7863 1.962807 TGGATGAGGCCAACTTGTTTG 59.037 47.619 5.01 0.00 34.31 2.93
7199 7864 1.337167 GGATGAGGCCAACTTGTTTGC 60.337 52.381 5.01 1.54 33.34 3.68
7200 7865 1.615392 GATGAGGCCAACTTGTTTGCT 59.385 47.619 5.01 0.00 33.34 3.91
7201 7866 2.356665 TGAGGCCAACTTGTTTGCTA 57.643 45.000 5.01 0.00 33.34 3.49
7202 7867 1.953686 TGAGGCCAACTTGTTTGCTAC 59.046 47.619 5.01 5.15 33.34 3.58
7205 7870 2.965147 AGGCCAACTTGTTTGCTACAAT 59.035 40.909 5.01 0.00 45.31 2.71
7213 7878 4.517453 ACTTGTTTGCTACAATCGGCTTTA 59.483 37.500 5.61 0.00 45.31 1.85
7214 7879 5.009210 ACTTGTTTGCTACAATCGGCTTTAA 59.991 36.000 5.61 0.00 45.31 1.52
7237 7902 3.923017 AAAGCTTCAACCATGTACTGC 57.077 42.857 0.00 0.00 0.00 4.40
7254 7919 2.252260 CGGAAGCTGCAAACCACG 59.748 61.111 1.02 0.00 0.00 4.94
7260 7925 2.026014 CTGCAAACCACGTGCACC 59.974 61.111 10.91 0.00 46.76 5.01
7261 7926 2.439338 TGCAAACCACGTGCACCT 60.439 55.556 10.91 0.00 46.76 4.00
7347 8012 0.948141 GAGCACTCGAAGTTGCAGCT 60.948 55.000 13.95 0.00 0.00 4.24
7349 8014 1.206072 CACTCGAAGTTGCAGCTGC 59.794 57.895 31.89 31.89 42.50 5.25
7367 8032 4.681421 CGGCGATGTATGCTGGAT 57.319 55.556 0.00 0.00 35.04 3.41
7370 8035 0.239347 GGCGATGTATGCTGGATTGC 59.761 55.000 0.00 0.00 0.00 3.56
7372 8037 1.334419 GCGATGTATGCTGGATTGCAC 60.334 52.381 0.00 0.00 46.33 4.57
7373 8038 1.070376 CGATGTATGCTGGATTGCACG 60.070 52.381 0.00 0.00 46.33 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 3.894547 TTCCGAAAGAGGCACGCCC 62.895 63.158 3.95 0.00 36.58 6.13
42 43 1.912371 CTTTCCGAAAGAGGCACGCC 61.912 60.000 14.72 0.00 41.02 5.68
43 44 0.949105 TCTTTCCGAAAGAGGCACGC 60.949 55.000 17.88 0.00 42.31 5.34
44 45 3.210857 TCTTTCCGAAAGAGGCACG 57.789 52.632 17.88 0.00 42.31 5.34
644 662 1.801512 GAACCGCTTTCGCCATTGC 60.802 57.895 0.00 0.00 0.00 3.56
715 733 3.551846 TCGCAGAGTTTTCCCTTTTTCT 58.448 40.909 0.00 0.00 0.00 2.52
732 751 2.741985 CCACCTGTCGCAATCGCA 60.742 61.111 0.00 0.00 38.40 5.10
733 752 4.166011 GCCACCTGTCGCAATCGC 62.166 66.667 0.00 0.00 35.26 4.58
734 753 3.853330 CGCCACCTGTCGCAATCG 61.853 66.667 0.00 0.00 0.00 3.34
861 880 0.179145 ACTCGTCCCGCTACAAATCG 60.179 55.000 0.00 0.00 0.00 3.34
862 881 2.098770 ACTACTCGTCCCGCTACAAATC 59.901 50.000 0.00 0.00 0.00 2.17
863 882 2.097825 ACTACTCGTCCCGCTACAAAT 58.902 47.619 0.00 0.00 0.00 2.32
864 883 1.538047 ACTACTCGTCCCGCTACAAA 58.462 50.000 0.00 0.00 0.00 2.83
865 884 2.401583 TACTACTCGTCCCGCTACAA 57.598 50.000 0.00 0.00 0.00 2.41
866 885 2.401583 TTACTACTCGTCCCGCTACA 57.598 50.000 0.00 0.00 0.00 2.74
891 910 3.377172 CGTACCAGAATTTAAAGGCCCAG 59.623 47.826 0.00 0.00 0.00 4.45
899 918 2.896168 CCGCTCCGTACCAGAATTTAA 58.104 47.619 0.00 0.00 0.00 1.52
902 921 1.153429 GCCGCTCCGTACCAGAATT 60.153 57.895 0.00 0.00 0.00 2.17
929 948 7.802117 TCTTTTTAGGGAGAAGAAAGAGTTGA 58.198 34.615 0.00 0.00 32.97 3.18
962 991 4.003788 CGAAGGGTGGGCACGAGT 62.004 66.667 0.00 0.00 0.00 4.18
1009 1039 3.788766 AACGCGAGCGGTTGATGC 61.789 61.111 21.69 0.00 44.69 3.91
1054 1087 2.706190 CACCCCTCCTCCTTACCTATTG 59.294 54.545 0.00 0.00 0.00 1.90
1111 1152 3.438017 CTAGCACTGGGGCGAGCTC 62.438 68.421 2.73 2.73 38.47 4.09
1112 1153 3.465403 CTAGCACTGGGGCGAGCT 61.465 66.667 0.00 0.00 40.92 4.09
1113 1154 2.707529 GATCTAGCACTGGGGCGAGC 62.708 65.000 0.13 0.00 36.59 5.03
1114 1155 1.365633 GATCTAGCACTGGGGCGAG 59.634 63.158 0.00 0.00 39.27 5.03
1115 1156 2.134287 GGATCTAGCACTGGGGCGA 61.134 63.158 0.00 0.00 39.27 5.54
1116 1157 2.423446 GGATCTAGCACTGGGGCG 59.577 66.667 0.00 0.00 39.27 6.13
1117 1158 2.423446 CGGATCTAGCACTGGGGC 59.577 66.667 0.00 0.00 0.00 5.80
1118 1159 2.423446 GCGGATCTAGCACTGGGG 59.577 66.667 8.46 0.00 34.19 4.96
1119 1160 2.423446 GGCGGATCTAGCACTGGG 59.577 66.667 13.89 0.00 36.08 4.45
1120 1161 1.227380 GTGGCGGATCTAGCACTGG 60.227 63.158 13.89 0.00 36.08 4.00
1121 1162 0.529337 CAGTGGCGGATCTAGCACTG 60.529 60.000 19.60 19.60 37.38 3.66
1263 1310 4.838152 GGCGAATGCTGCGAGGGA 62.838 66.667 0.00 0.00 42.25 4.20
1304 1351 4.988716 AGGTCTCCCGCGTCACCA 62.989 66.667 4.92 0.00 35.12 4.17
1338 1385 2.490217 CGCCGGAGACCAGTAGTG 59.510 66.667 5.05 0.00 0.00 2.74
1403 1450 2.905996 AAGCATCCCCGTGGCAGAA 61.906 57.895 0.00 0.00 0.00 3.02
1519 1566 5.049405 CACAAGTTCCAGCCTAAACAAGTAG 60.049 44.000 0.00 0.00 0.00 2.57
1521 1568 3.632145 CACAAGTTCCAGCCTAAACAAGT 59.368 43.478 0.00 0.00 0.00 3.16
1786 1931 3.247006 TCATACAGGAGCGGACTTTTC 57.753 47.619 0.00 0.00 0.00 2.29
1788 1933 3.432326 GGATTCATACAGGAGCGGACTTT 60.432 47.826 0.00 0.00 0.00 2.66
1824 1970 2.982470 GCAATCGAGAACAAAAAGCCAG 59.018 45.455 0.00 0.00 0.00 4.85
1894 2042 0.108585 ACATGCCCAGACGTTTCAGT 59.891 50.000 0.00 0.00 0.00 3.41
1919 2067 9.941325 TTGGTAATTGTATACGACCTTTAAGAA 57.059 29.630 13.87 1.41 0.00 2.52
1920 2068 9.590451 CTTGGTAATTGTATACGACCTTTAAGA 57.410 33.333 13.87 0.00 0.00 2.10
1931 2097 8.617290 ATTTCGATCCCTTGGTAATTGTATAC 57.383 34.615 0.00 0.00 0.00 1.47
2248 2430 2.370189 AGGAGCTAAATCCATTCCCTCG 59.630 50.000 0.00 0.00 42.26 4.63
2495 2681 9.586435 AGTAAAATATTAGAATTTGGCTGTTGC 57.414 29.630 0.00 0.00 38.76 4.17
2637 2896 8.479313 TCAGATGTGTACATGAAATTACAGAC 57.521 34.615 0.00 0.00 36.57 3.51
2915 3192 7.543520 CCAATTAAGAAAAGAAAGCAGGATGAC 59.456 37.037 0.00 0.00 39.69 3.06
3000 3277 5.975988 AGCAAACCTCCTCTCCATATTTA 57.024 39.130 0.00 0.00 0.00 1.40
3006 3283 1.434188 TGAAGCAAACCTCCTCTCCA 58.566 50.000 0.00 0.00 0.00 3.86
3209 3486 4.225717 TCTCATCCATGACATTCAAGGACA 59.774 41.667 2.35 0.00 45.63 4.02
3416 3694 3.889815 TCATTCTTAGACAGGCATTGGG 58.110 45.455 0.00 0.00 0.00 4.12
3833 4130 4.384098 CCCTTTGTACCACATGCATCTCTA 60.384 45.833 0.00 0.00 0.00 2.43
3835 4132 2.684881 CCCTTTGTACCACATGCATCTC 59.315 50.000 0.00 0.00 0.00 2.75
3986 4284 1.110442 TGACAGCCCAAAACAACAGG 58.890 50.000 0.00 0.00 0.00 4.00
4003 4301 2.632512 GCTCAAAACAGGGGGAAAATGA 59.367 45.455 0.00 0.00 0.00 2.57
4178 4480 7.158021 AGAATAGCTGCAGGATAAATAGTGTC 58.842 38.462 17.12 0.00 0.00 3.67
4205 4507 2.522013 ATAATGCCTCCTCCTCCCTT 57.478 50.000 0.00 0.00 0.00 3.95
4259 4561 9.436957 TTTGAGTATAGATGAGGAAACAGAAAC 57.563 33.333 0.00 0.00 0.00 2.78
4444 4862 9.319143 CCATAAATTAACAGACAACAAAAACCA 57.681 29.630 0.00 0.00 0.00 3.67
4451 4869 6.657541 GGACCTCCATAAATTAACAGACAACA 59.342 38.462 0.00 0.00 35.64 3.33
4457 4875 5.192927 TGCTGGACCTCCATAAATTAACAG 58.807 41.667 0.00 0.00 46.46 3.16
4522 4940 4.397417 AGCTCACATGAATAAAAGCAGGAC 59.603 41.667 0.00 0.00 32.25 3.85
4635 5054 0.396695 CAATGCAGGGCTCCTTCCAT 60.397 55.000 0.00 0.00 0.00 3.41
4692 5111 0.250124 ACCGACGAAGCAAATGGACA 60.250 50.000 0.00 0.00 0.00 4.02
4719 5138 7.229707 TCCAAAACAAGAAGATTCCGTTTATCA 59.770 33.333 9.74 0.00 34.28 2.15
4797 5216 8.997621 ATAATTACGTATTTAGCATCACCGAT 57.002 30.769 13.56 0.00 0.00 4.18
4799 5218 9.872757 AAAATAATTACGTATTTAGCATCACCG 57.127 29.630 13.56 0.00 33.50 4.94
4815 5234 6.548171 TCCTTGCTGCACGTAAAATAATTAC 58.452 36.000 0.00 0.00 0.00 1.89
4925 5344 8.534778 GTGAAACATAAGCTTTTGAACTTTCAG 58.465 33.333 22.59 0.98 35.99 3.02
5004 5437 1.264288 GACTTTTCGCACCCTGTCAAG 59.736 52.381 0.00 0.00 0.00 3.02
5018 5456 5.075493 ACTGAGAGCAATGGATTGACTTTT 58.925 37.500 3.47 0.00 40.14 2.27
5200 5640 6.615617 AGTAGTACAGATATGACCATGGAGT 58.384 40.000 21.47 6.12 0.00 3.85
5271 5711 1.789576 AATCGGTTGGAAGCCCCACT 61.790 55.000 0.00 0.00 46.62 4.00
5410 5850 2.176273 GCTGCCGCATCGACTGATT 61.176 57.895 0.00 0.00 35.78 2.57
5493 5933 1.845809 CGTCTGCAGGGAAAGCACAC 61.846 60.000 15.13 0.00 37.02 3.82
5616 6056 2.031012 TGCCTGGTTGTGCTCTCG 59.969 61.111 0.00 0.00 0.00 4.04
5622 6062 3.548745 TCATAGATCTGCCTGGTTGTG 57.451 47.619 5.18 0.00 0.00 3.33
5700 6141 1.222661 GTACGTCCCCATGAACCCC 59.777 63.158 0.00 0.00 0.00 4.95
5718 6167 5.674052 TCTGATTCTCTTTCCCTTCAGAG 57.326 43.478 0.00 0.00 35.82 3.35
5725 6174 6.771749 ACATTCATCATCTGATTCTCTTTCCC 59.228 38.462 0.00 0.00 32.72 3.97
5854 6324 0.528684 GAGGCCTCTCGGTTTCATCG 60.529 60.000 26.25 0.00 0.00 3.84
5870 6340 3.767230 CGTGCGCGTGTTCAGAGG 61.767 66.667 12.43 0.00 0.00 3.69
5912 6406 4.024218 GCAGATCCACTACTTCATTGATGC 60.024 45.833 0.00 0.00 0.00 3.91
5913 6407 4.210746 CGCAGATCCACTACTTCATTGATG 59.789 45.833 0.00 0.00 0.00 3.07
5914 6408 4.375272 CGCAGATCCACTACTTCATTGAT 58.625 43.478 0.00 0.00 0.00 2.57
5915 6409 3.430790 CCGCAGATCCACTACTTCATTGA 60.431 47.826 0.00 0.00 0.00 2.57
5916 6410 2.868583 CCGCAGATCCACTACTTCATTG 59.131 50.000 0.00 0.00 0.00 2.82
5917 6411 2.743183 GCCGCAGATCCACTACTTCATT 60.743 50.000 0.00 0.00 0.00 2.57
5918 6412 1.202580 GCCGCAGATCCACTACTTCAT 60.203 52.381 0.00 0.00 0.00 2.57
5919 6413 0.175760 GCCGCAGATCCACTACTTCA 59.824 55.000 0.00 0.00 0.00 3.02
5920 6414 0.872021 CGCCGCAGATCCACTACTTC 60.872 60.000 0.00 0.00 0.00 3.01
5924 6422 2.490148 CCTCGCCGCAGATCCACTA 61.490 63.158 0.00 0.00 0.00 2.74
5928 6426 4.292178 CCTCCTCGCCGCAGATCC 62.292 72.222 0.00 0.00 0.00 3.36
6009 6507 3.279434 GAACTGGGAACACATGGGATAC 58.721 50.000 0.00 0.00 35.60 2.24
6014 6512 1.156736 GTCGAACTGGGAACACATGG 58.843 55.000 0.00 0.00 35.60 3.66
6075 6574 1.085091 AGCGTAGTAGGAGTGACGTG 58.915 55.000 0.00 0.00 37.61 4.49
6116 6619 6.267471 AGCCTGAAGAAGAAGAGGATATACAG 59.733 42.308 0.00 0.00 0.00 2.74
6117 6620 6.139671 AGCCTGAAGAAGAAGAGGATATACA 58.860 40.000 0.00 0.00 0.00 2.29
6118 6621 6.664428 AGCCTGAAGAAGAAGAGGATATAC 57.336 41.667 0.00 0.00 0.00 1.47
6119 6622 8.964533 ATAAGCCTGAAGAAGAAGAGGATATA 57.035 34.615 0.00 0.00 0.00 0.86
6120 6623 7.870426 ATAAGCCTGAAGAAGAAGAGGATAT 57.130 36.000 0.00 0.00 0.00 1.63
6121 6624 7.682787 AATAAGCCTGAAGAAGAAGAGGATA 57.317 36.000 0.00 0.00 0.00 2.59
6122 6625 6.573712 AATAAGCCTGAAGAAGAAGAGGAT 57.426 37.500 0.00 0.00 0.00 3.24
6123 6626 7.682787 ATAATAAGCCTGAAGAAGAAGAGGA 57.317 36.000 0.00 0.00 0.00 3.71
6124 6627 9.267084 GTTATAATAAGCCTGAAGAAGAAGAGG 57.733 37.037 0.00 0.00 0.00 3.69
6152 6655 8.948145 AGTAGAATCGATCGCTACAACTTATAT 58.052 33.333 26.80 11.20 37.54 0.86
6153 6656 8.320396 AGTAGAATCGATCGCTACAACTTATA 57.680 34.615 26.80 1.55 37.54 0.98
6154 6657 7.204496 AGTAGAATCGATCGCTACAACTTAT 57.796 36.000 26.80 12.17 37.54 1.73
6190 6693 1.077501 CATCCCTTGGTGGCACGAT 60.078 57.895 12.17 5.35 0.00 3.73
6192 6695 2.034066 ACATCCCTTGGTGGCACG 59.966 61.111 12.17 0.00 0.00 5.34
6194 6697 1.074775 GTCACATCCCTTGGTGGCA 59.925 57.895 0.00 0.00 39.36 4.92
6195 6698 2.040544 CGTCACATCCCTTGGTGGC 61.041 63.158 0.00 0.00 36.32 5.01
6200 6703 1.447838 CCGTCCGTCACATCCCTTG 60.448 63.158 0.00 0.00 0.00 3.61
6276 6843 2.007568 TACTCGCTCCCTCCCTCCT 61.008 63.158 0.00 0.00 0.00 3.69
6313 6880 4.711949 AACGCTGGCTCTGGCTGG 62.712 66.667 0.00 0.00 38.73 4.85
6415 6997 1.663135 GAGCTGGCGCAAAAACAAAAA 59.337 42.857 10.83 0.00 39.10 1.94
6416 6998 1.134848 AGAGCTGGCGCAAAAACAAAA 60.135 42.857 10.83 0.00 39.10 2.44
6417 6999 0.459489 AGAGCTGGCGCAAAAACAAA 59.541 45.000 10.83 0.00 39.10 2.83
6420 7002 0.242017 ATCAGAGCTGGCGCAAAAAC 59.758 50.000 10.83 0.00 39.10 2.43
6421 7003 0.961019 AATCAGAGCTGGCGCAAAAA 59.039 45.000 10.83 0.00 39.10 1.94
6424 7006 1.588824 CCAAATCAGAGCTGGCGCAA 61.589 55.000 10.83 0.00 39.10 4.85
6425 7007 2.042259 CCAAATCAGAGCTGGCGCA 61.042 57.895 10.83 0.00 39.10 6.09
6426 7008 1.712977 CTCCAAATCAGAGCTGGCGC 61.713 60.000 0.00 0.00 0.00 6.53
6446 7085 9.142014 TGGTAATTTTACAATGGATGGGATAAG 57.858 33.333 3.12 0.00 35.37 1.73
6448 7087 7.507616 GGTGGTAATTTTACAATGGATGGGATA 59.492 37.037 3.12 0.00 35.37 2.59
6451 7090 5.163353 GGGTGGTAATTTTACAATGGATGGG 60.163 44.000 3.12 0.00 35.37 4.00
6474 7121 8.773645 ACATCATACATGATATTAACACGTTGG 58.226 33.333 0.00 0.00 45.23 3.77
6475 7122 9.584839 CACATCATACATGATATTAACACGTTG 57.415 33.333 0.00 0.00 45.23 4.10
6551 7199 0.393537 CTTTGCTCCCTCCGATTGCT 60.394 55.000 0.00 0.00 0.00 3.91
6552 7200 0.392998 TCTTTGCTCCCTCCGATTGC 60.393 55.000 0.00 0.00 0.00 3.56
6553 7201 2.113860 TTCTTTGCTCCCTCCGATTG 57.886 50.000 0.00 0.00 0.00 2.67
6554 7202 2.040412 ACTTTCTTTGCTCCCTCCGATT 59.960 45.455 0.00 0.00 0.00 3.34
6555 7203 1.630878 ACTTTCTTTGCTCCCTCCGAT 59.369 47.619 0.00 0.00 0.00 4.18
6556 7204 1.056660 ACTTTCTTTGCTCCCTCCGA 58.943 50.000 0.00 0.00 0.00 4.55
6557 7205 1.160137 CACTTTCTTTGCTCCCTCCG 58.840 55.000 0.00 0.00 0.00 4.63
6558 7206 0.884514 GCACTTTCTTTGCTCCCTCC 59.115 55.000 0.00 0.00 37.00 4.30
6559 7207 1.609208 TGCACTTTCTTTGCTCCCTC 58.391 50.000 0.00 0.00 40.86 4.30
6560 7208 1.891150 CATGCACTTTCTTTGCTCCCT 59.109 47.619 0.00 0.00 40.86 4.20
6561 7209 1.615392 ACATGCACTTTCTTTGCTCCC 59.385 47.619 0.00 0.00 40.86 4.30
6562 7210 2.669364 CACATGCACTTTCTTTGCTCC 58.331 47.619 0.00 0.00 40.86 4.70
6563 7211 2.056577 GCACATGCACTTTCTTTGCTC 58.943 47.619 0.00 0.00 40.86 4.26
6564 7212 2.144482 GCACATGCACTTTCTTTGCT 57.856 45.000 0.00 0.00 40.86 3.91
6576 7224 2.557805 CCACAGTCGTGCACATGC 59.442 61.111 18.64 5.91 42.17 4.06
6577 7225 2.253051 TGCCACAGTCGTGCACATG 61.253 57.895 18.64 14.30 42.17 3.21
6578 7226 2.110835 TGCCACAGTCGTGCACAT 59.889 55.556 18.64 0.00 42.17 3.21
6579 7227 2.894879 GTGCCACAGTCGTGCACA 60.895 61.111 18.64 0.81 43.57 4.57
6580 7228 1.785041 ATTGTGCCACAGTCGTGCAC 61.785 55.000 6.82 6.82 43.98 4.57
6581 7229 1.525765 ATTGTGCCACAGTCGTGCA 60.526 52.632 0.00 0.00 42.17 4.57
6582 7230 1.081906 CATTGTGCCACAGTCGTGC 60.082 57.895 0.00 0.00 42.17 5.34
6583 7231 1.081906 GCATTGTGCCACAGTCGTG 60.082 57.895 0.00 0.00 43.21 4.35
6584 7232 1.100463 TTGCATTGTGCCACAGTCGT 61.100 50.000 0.00 0.00 44.23 4.34
6585 7233 0.241749 ATTGCATTGTGCCACAGTCG 59.758 50.000 0.00 0.00 44.23 4.18
6586 7234 1.270274 TCATTGCATTGTGCCACAGTC 59.730 47.619 8.36 0.00 44.23 3.51
6587 7235 1.330234 TCATTGCATTGTGCCACAGT 58.670 45.000 8.36 0.00 44.23 3.55
6588 7236 2.442212 TTCATTGCATTGTGCCACAG 57.558 45.000 8.36 0.00 44.23 3.66
6589 7237 2.548280 CCTTTCATTGCATTGTGCCACA 60.548 45.455 8.36 0.00 44.23 4.17
6590 7238 2.070783 CCTTTCATTGCATTGTGCCAC 58.929 47.619 8.36 0.00 44.23 5.01
6591 7239 1.608542 GCCTTTCATTGCATTGTGCCA 60.609 47.619 8.36 0.00 44.23 4.92
6592 7240 1.081094 GCCTTTCATTGCATTGTGCC 58.919 50.000 8.36 0.00 44.23 5.01
6593 7241 1.081094 GGCCTTTCATTGCATTGTGC 58.919 50.000 8.36 7.32 45.29 4.57
6594 7242 1.337074 ACGGCCTTTCATTGCATTGTG 60.337 47.619 0.00 0.00 0.00 3.33
6595 7243 0.968405 ACGGCCTTTCATTGCATTGT 59.032 45.000 0.00 0.00 0.00 2.71
6596 7244 1.352114 CACGGCCTTTCATTGCATTG 58.648 50.000 0.00 2.08 0.00 2.82
6597 7245 0.390209 GCACGGCCTTTCATTGCATT 60.390 50.000 0.00 0.00 33.24 3.56
6598 7246 1.216178 GCACGGCCTTTCATTGCAT 59.784 52.632 0.00 0.00 33.24 3.96
6599 7247 1.534336 ATGCACGGCCTTTCATTGCA 61.534 50.000 0.00 6.33 46.59 4.08
6600 7248 0.803380 GATGCACGGCCTTTCATTGC 60.803 55.000 0.00 0.10 0.00 3.56
6601 7249 0.179129 GGATGCACGGCCTTTCATTG 60.179 55.000 0.00 0.00 0.00 2.82
6602 7250 0.323725 AGGATGCACGGCCTTTCATT 60.324 50.000 0.00 0.00 0.00 2.57
6603 7251 0.546122 TAGGATGCACGGCCTTTCAT 59.454 50.000 9.59 0.00 35.73 2.57
6604 7252 0.392461 GTAGGATGCACGGCCTTTCA 60.392 55.000 9.59 0.00 35.73 2.69
6605 7253 1.095807 GGTAGGATGCACGGCCTTTC 61.096 60.000 9.59 4.77 35.73 2.62
6606 7254 1.077716 GGTAGGATGCACGGCCTTT 60.078 57.895 9.59 0.00 35.73 3.11
6607 7255 2.590092 GGTAGGATGCACGGCCTT 59.410 61.111 9.59 0.00 35.73 4.35
6608 7256 3.480133 GGGTAGGATGCACGGCCT 61.480 66.667 0.00 9.31 38.31 5.19
6609 7257 3.120086 ATGGGTAGGATGCACGGCC 62.120 63.158 0.00 0.00 0.00 6.13
6610 7258 1.893808 CATGGGTAGGATGCACGGC 60.894 63.158 0.00 0.00 0.00 5.68
6611 7259 0.815213 CACATGGGTAGGATGCACGG 60.815 60.000 0.00 0.00 0.00 4.94
6612 7260 0.107703 ACACATGGGTAGGATGCACG 60.108 55.000 0.00 0.00 0.00 5.34
6613 7261 1.668419 GACACATGGGTAGGATGCAC 58.332 55.000 0.00 0.00 0.00 4.57
6614 7262 0.177836 CGACACATGGGTAGGATGCA 59.822 55.000 0.00 0.00 0.00 3.96
6615 7263 1.160329 GCGACACATGGGTAGGATGC 61.160 60.000 10.41 1.96 0.00 3.91
6616 7264 0.532862 GGCGACACATGGGTAGGATG 60.533 60.000 10.41 0.00 0.00 3.51
6617 7265 0.980754 TGGCGACACATGGGTAGGAT 60.981 55.000 10.41 0.00 33.40 3.24
6618 7266 1.610967 TGGCGACACATGGGTAGGA 60.611 57.895 10.41 0.00 33.40 2.94
6619 7267 2.986290 TGGCGACACATGGGTAGG 59.014 61.111 10.41 2.26 33.40 3.18
6630 7278 2.438434 CCCCTTCACCATGGCGAC 60.438 66.667 13.04 0.00 0.00 5.19
6631 7279 2.609299 TCCCCTTCACCATGGCGA 60.609 61.111 13.04 4.56 0.00 5.54
6632 7280 2.124570 CTCCCCTTCACCATGGCG 60.125 66.667 13.04 1.26 0.00 5.69
6633 7281 1.077429 GACTCCCCTTCACCATGGC 60.077 63.158 13.04 0.00 0.00 4.40
6634 7282 0.698238 TTGACTCCCCTTCACCATGG 59.302 55.000 11.19 11.19 0.00 3.66
6635 7283 2.584835 TTTGACTCCCCTTCACCATG 57.415 50.000 0.00 0.00 0.00 3.66
6636 7284 3.611025 TTTTTGACTCCCCTTCACCAT 57.389 42.857 0.00 0.00 0.00 3.55
6653 7301 2.695359 CATCATGGCTTGCAGCTTTTT 58.305 42.857 7.85 0.00 41.99 1.94
6654 7302 1.674817 GCATCATGGCTTGCAGCTTTT 60.675 47.619 10.17 0.00 41.99 2.27
6655 7303 0.108329 GCATCATGGCTTGCAGCTTT 60.108 50.000 10.17 0.00 41.99 3.51
6656 7304 1.515954 GCATCATGGCTTGCAGCTT 59.484 52.632 10.17 0.00 41.99 3.74
6657 7305 2.771639 CGCATCATGGCTTGCAGCT 61.772 57.895 13.90 0.00 41.99 4.24
6658 7306 2.278596 CGCATCATGGCTTGCAGC 60.279 61.111 13.90 1.70 41.46 5.25
6659 7307 2.278596 GCGCATCATGGCTTGCAG 60.279 61.111 0.30 9.04 38.80 4.41
6660 7308 3.829044 GGCGCATCATGGCTTGCA 61.829 61.111 10.83 0.00 38.80 4.08
6661 7309 4.918129 CGGCGCATCATGGCTTGC 62.918 66.667 10.83 0.00 35.50 4.01
6662 7310 4.918129 GCGGCGCATCATGGCTTG 62.918 66.667 29.21 0.00 0.00 4.01
6678 7326 0.523335 CTTGATTAAACAGCGGCCGC 60.523 55.000 42.34 42.34 42.33 6.53
6679 7327 0.523335 GCTTGATTAAACAGCGGCCG 60.523 55.000 24.05 24.05 0.00 6.13
6680 7328 0.179137 GGCTTGATTAAACAGCGGCC 60.179 55.000 0.00 0.00 0.00 6.13
6681 7329 0.523335 CGGCTTGATTAAACAGCGGC 60.523 55.000 0.00 0.00 0.00 6.53
6682 7330 1.083489 TCGGCTTGATTAAACAGCGG 58.917 50.000 5.56 5.56 0.00 5.52
6683 7331 2.774007 CTTCGGCTTGATTAAACAGCG 58.226 47.619 0.00 0.00 0.00 5.18
6684 7332 2.519963 GCTTCGGCTTGATTAAACAGC 58.480 47.619 0.00 0.00 38.08 4.40
6704 7352 2.097038 CCCGTCGCAGCTCTTTCAG 61.097 63.158 0.00 0.00 0.00 3.02
6705 7353 2.048222 CCCGTCGCAGCTCTTTCA 60.048 61.111 0.00 0.00 0.00 2.69
6706 7354 1.668151 AACCCGTCGCAGCTCTTTC 60.668 57.895 0.00 0.00 0.00 2.62
6707 7355 1.961277 CAACCCGTCGCAGCTCTTT 60.961 57.895 0.00 0.00 0.00 2.52
6708 7356 2.357517 CAACCCGTCGCAGCTCTT 60.358 61.111 0.00 0.00 0.00 2.85
6709 7357 4.379243 CCAACCCGTCGCAGCTCT 62.379 66.667 0.00 0.00 0.00 4.09
6739 7387 3.598562 GCATCGTCTGCGTCGTCG 61.599 66.667 0.00 0.00 41.97 5.12
6748 7396 3.461773 CCGGTCCCAGCATCGTCT 61.462 66.667 0.00 0.00 0.00 4.18
6792 7440 1.406341 GCCACGGTTATAGCACTTCCA 60.406 52.381 0.00 0.00 0.00 3.53
6796 7444 0.462047 GCTGCCACGGTTATAGCACT 60.462 55.000 0.00 0.00 34.64 4.40
6803 7451 0.038709 GCATTTTGCTGCCACGGTTA 60.039 50.000 0.00 0.00 40.96 2.85
6822 7470 3.777925 CGCGGCTGTTGGTTCGAG 61.778 66.667 0.00 0.00 0.00 4.04
6824 7472 4.072088 GTCGCGGCTGTTGGTTCG 62.072 66.667 1.90 0.00 0.00 3.95
6864 7520 2.101249 CCAGCAACAACAATGACTGGTT 59.899 45.455 0.00 0.00 39.08 3.67
6870 7526 4.669206 ATGTTTCCAGCAACAACAATGA 57.331 36.364 0.00 0.00 40.07 2.57
6878 7534 6.544038 AAAATGCTTAATGTTTCCAGCAAC 57.456 33.333 0.00 0.00 45.14 4.17
6888 7544 4.996758 GGTTCCAGCAAAAATGCTTAATGT 59.003 37.500 0.00 0.00 43.52 2.71
6914 7570 3.386402 TGTACTCGTATCCATGGCAATCA 59.614 43.478 6.96 0.00 0.00 2.57
6919 7575 3.005897 AGACATGTACTCGTATCCATGGC 59.994 47.826 6.96 8.26 42.45 4.40
6978 7637 1.809684 AGCAAACTTTCTAGCCGACC 58.190 50.000 0.00 0.00 0.00 4.79
6980 7639 3.120321 TGAAGCAAACTTTCTAGCCGA 57.880 42.857 0.00 0.00 35.82 5.54
6983 7642 4.275936 TCTGGTTGAAGCAAACTTTCTAGC 59.724 41.667 0.00 0.00 35.82 3.42
6985 7644 5.189928 TGTCTGGTTGAAGCAAACTTTCTA 58.810 37.500 2.38 0.00 35.82 2.10
7071 7734 4.700213 TGGTAGCAAAATTTAGGCTGACTC 59.300 41.667 21.27 11.85 38.55 3.36
7073 7736 4.380550 GGTGGTAGCAAAATTTAGGCTGAC 60.381 45.833 21.27 15.55 38.55 3.51
7074 7737 3.761752 GGTGGTAGCAAAATTTAGGCTGA 59.238 43.478 21.27 7.71 38.55 4.26
7095 7759 3.574284 TCCAGCAAAATTGAATGACGG 57.426 42.857 0.00 0.00 0.00 4.79
7100 7764 3.071312 TGCCAGTTCCAGCAAAATTGAAT 59.929 39.130 0.00 0.00 35.69 2.57
7104 7768 3.775261 AATGCCAGTTCCAGCAAAATT 57.225 38.095 0.00 0.00 43.36 1.82
7118 7782 0.039617 CGAAGCACGGAAAAATGCCA 60.040 50.000 0.00 0.00 43.12 4.92
7128 7792 2.345641 CAGTTACTTGATCGAAGCACGG 59.654 50.000 0.00 0.00 42.82 4.94
7129 7793 2.345641 CCAGTTACTTGATCGAAGCACG 59.654 50.000 0.00 0.00 44.09 5.34
7130 7795 3.585862 TCCAGTTACTTGATCGAAGCAC 58.414 45.455 0.00 3.60 34.68 4.40
7137 7802 9.076596 GCAACAAAAATATCCAGTTACTTGATC 57.923 33.333 2.07 0.00 0.00 2.92
7143 7808 8.810652 TGAAAGCAACAAAAATATCCAGTTAC 57.189 30.769 0.00 0.00 0.00 2.50
7152 7817 8.891720 AGCAAGAAATTGAAAGCAACAAAAATA 58.108 25.926 0.00 0.00 36.72 1.40
7176 7841 0.610232 ACAAGTTGGCCTCATCCAGC 60.610 55.000 3.32 0.00 37.44 4.85
7177 7842 1.915141 AACAAGTTGGCCTCATCCAG 58.085 50.000 3.32 0.00 37.44 3.86
7178 7843 1.962807 CAAACAAGTTGGCCTCATCCA 59.037 47.619 3.32 0.00 33.18 3.41
7179 7844 1.337167 GCAAACAAGTTGGCCTCATCC 60.337 52.381 3.32 0.00 37.73 3.51
7180 7845 1.615392 AGCAAACAAGTTGGCCTCATC 59.385 47.619 3.32 0.00 40.34 2.92
7181 7846 1.708341 AGCAAACAAGTTGGCCTCAT 58.292 45.000 3.32 0.00 40.34 2.90
7182 7847 1.953686 GTAGCAAACAAGTTGGCCTCA 59.046 47.619 3.32 0.00 40.34 3.86
7183 7848 1.953686 TGTAGCAAACAAGTTGGCCTC 59.046 47.619 3.32 3.59 40.34 4.70
7184 7849 2.065899 TGTAGCAAACAAGTTGGCCT 57.934 45.000 3.32 0.46 40.34 5.19
7193 7858 5.440234 TTTAAAGCCGATTGTAGCAAACA 57.560 34.783 0.00 0.00 35.88 2.83
7194 7859 6.757026 TTTTTAAAGCCGATTGTAGCAAAC 57.243 33.333 0.00 0.00 0.00 2.93
7237 7902 2.252260 CGTGGTTTGCAGCTTCCG 59.748 61.111 0.00 0.00 0.00 4.30
7249 7914 3.550431 AGCTCAGGTGCACGTGGT 61.550 61.111 32.50 18.47 34.99 4.16
7260 7925 1.080995 GTAGACGGCTTGCAGCTCAG 61.081 60.000 0.00 0.00 41.99 3.35
7261 7926 1.079819 GTAGACGGCTTGCAGCTCA 60.080 57.895 0.00 0.00 41.99 4.26
7314 7979 3.360340 GCTCGTGCTTGCAGCCTT 61.360 61.111 1.41 0.00 41.51 4.35
7343 8008 2.280389 ATACATCGCCGGCAGCTG 60.280 61.111 28.98 21.50 40.39 4.24
7347 8012 2.588596 CAGCATACATCGCCGGCA 60.589 61.111 28.98 14.46 0.00 5.69
7349 8014 0.603707 AATCCAGCATACATCGCCGG 60.604 55.000 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.