Multiple sequence alignment - TraesCS3B01G449500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G449500 chr3B 100.000 4180 0 0 1 4180 690107466 690103287 0.000000e+00 7720.0
1 TraesCS3B01G449500 chr3B 94.106 509 28 2 3351 3858 765781723 765782230 0.000000e+00 773.0
2 TraesCS3B01G449500 chr3B 80.096 628 77 30 509 1124 690115741 690115150 1.390000e-114 424.0
3 TraesCS3B01G449500 chr3B 97.500 240 5 1 2226 2464 798008453 798008214 3.890000e-110 409.0
4 TraesCS3B01G449500 chr3B 97.490 239 5 1 2226 2463 396836067 396835829 1.400000e-109 407.0
5 TraesCS3B01G449500 chr3B 84.086 421 47 9 2935 3351 689985473 689985069 5.070000e-104 388.0
6 TraesCS3B01G449500 chr3B 84.048 420 47 12 2935 3354 690112924 690112525 1.820000e-103 387.0
7 TraesCS3B01G449500 chr3B 88.583 254 22 2 1767 2014 690114959 690114707 6.790000e-78 302.0
8 TraesCS3B01G449500 chr3B 84.191 272 39 4 1223 1492 689992224 689991955 1.150000e-65 261.0
9 TraesCS3B01G449500 chr3B 83.333 270 40 5 1239 1506 690114975 690114709 1.160000e-60 244.0
10 TraesCS3B01G449500 chr3B 82.963 270 40 6 1239 1506 690358521 690358256 5.400000e-59 239.0
11 TraesCS3B01G449500 chr3B 76.645 471 60 29 666 1124 690359155 690358723 9.100000e-52 215.0
12 TraesCS3B01G449500 chr3B 85.024 207 30 1 66 271 87951057 87950851 4.230000e-50 209.0
13 TraesCS3B01G449500 chr3B 86.111 180 19 3 936 1109 689992583 689992404 5.520000e-44 189.0
14 TraesCS3B01G449500 chr3B 77.477 222 41 6 269 484 111932536 111932318 1.580000e-24 124.0
15 TraesCS3B01G449500 chr3B 79.130 115 14 6 266 377 471484345 471484452 2.080000e-08 71.3
16 TraesCS3B01G449500 chr7B 95.793 832 31 3 3351 4180 99109509 99110338 0.000000e+00 1339.0
17 TraesCS3B01G449500 chr7B 94.438 827 33 4 3351 4177 608308484 608309297 0.000000e+00 1260.0
18 TraesCS3B01G449500 chr7B 95.968 248 9 1 2217 2463 23209017 23208770 6.510000e-108 401.0
19 TraesCS3B01G449500 chr5B 94.940 830 33 4 3351 4180 291501819 291502639 0.000000e+00 1291.0
20 TraesCS3B01G449500 chr5B 93.157 833 29 4 3351 4180 532927263 532926456 0.000000e+00 1197.0
21 TraesCS3B01G449500 chr5B 96.774 248 7 1 2217 2463 393769793 393770040 3.010000e-111 412.0
22 TraesCS3B01G449500 chr5B 85.340 191 26 2 77 266 675456306 675456117 3.300000e-46 196.0
23 TraesCS3B01G449500 chr5B 78.226 124 22 4 282 402 344627199 344627078 1.610000e-09 75.0
24 TraesCS3B01G449500 chr6A 94.585 831 39 4 3351 4180 5075172 5075997 0.000000e+00 1280.0
25 TraesCS3B01G449500 chr1A 94.585 831 37 4 3351 4180 541074851 541075674 0.000000e+00 1279.0
26 TraesCS3B01G449500 chr1A 94.344 831 41 4 3351 4180 558439274 558440099 0.000000e+00 1269.0
27 TraesCS3B01G449500 chr1A 84.817 191 27 2 77 266 272129409 272129220 1.530000e-44 191.0
28 TraesCS3B01G449500 chr1A 78.226 124 22 4 282 402 512477659 512477538 1.610000e-09 75.0
29 TraesCS3B01G449500 chr3A 94.337 830 44 1 3351 4180 730230778 730231604 0.000000e+00 1269.0
30 TraesCS3B01G449500 chr3A 86.142 267 27 7 1767 2026 658096365 658096102 3.180000e-71 279.0
31 TraesCS3B01G449500 chr3A 84.322 236 33 4 1255 1488 658096365 658096132 1.170000e-55 228.0
32 TraesCS3B01G449500 chr3A 92.553 94 7 0 1669 1762 658096526 658096433 7.290000e-28 135.0
33 TraesCS3B01G449500 chr3A 76.875 160 24 9 324 478 482091938 482092089 1.250000e-10 78.7
34 TraesCS3B01G449500 chr3A 78.226 124 22 4 282 402 41985568 41985447 1.610000e-09 75.0
35 TraesCS3B01G449500 chr7A 94.224 831 41 4 3351 4180 651090806 651089982 0.000000e+00 1262.0
36 TraesCS3B01G449500 chr7A 94.096 830 44 4 3354 4180 726931002 726931829 0.000000e+00 1256.0
37 TraesCS3B01G449500 chr7A 85.075 67 7 3 2631 2697 641574191 641574254 9.700000e-07 65.8
38 TraesCS3B01G449500 chr7A 94.595 37 1 1 2664 2699 706847849 706847885 5.840000e-04 56.5
39 TraesCS3B01G449500 chr4A 93.983 831 43 4 3351 4180 164653387 164654211 0.000000e+00 1251.0
40 TraesCS3B01G449500 chr4A 78.226 124 22 4 282 402 640996996 640996875 1.610000e-09 75.0
41 TraesCS3B01G449500 chr2A 94.231 832 23 6 3351 4180 763146660 763147468 0.000000e+00 1247.0
42 TraesCS3B01G449500 chr2A 93.735 830 50 2 3351 4180 720315941 720316768 0.000000e+00 1243.0
43 TraesCS3B01G449500 chr2A 88.679 53 4 1 2645 2697 756496483 756496433 3.490000e-06 63.9
44 TraesCS3B01G449500 chr2D 92.096 835 55 5 3354 4180 548974167 548973336 0.000000e+00 1166.0
45 TraesCS3B01G449500 chr2D 92.000 50 1 3 2644 2692 12322535 12322488 2.700000e-07 67.6
46 TraesCS3B01G449500 chr5A 92.298 831 40 9 3351 4180 568049979 568050786 0.000000e+00 1158.0
47 TraesCS3B01G449500 chr5A 84.375 192 30 0 77 268 582401995 582402186 5.520000e-44 189.0
48 TraesCS3B01G449500 chr5A 84.574 188 29 0 77 264 597664814 597665001 1.980000e-43 187.0
49 TraesCS3B01G449500 chr3D 89.920 625 49 9 1 616 523310420 523309801 0.000000e+00 793.0
50 TraesCS3B01G449500 chr3D 89.935 616 43 18 1603 2200 523307939 523307325 0.000000e+00 776.0
51 TraesCS3B01G449500 chr3D 86.042 566 42 17 742 1304 523309256 523308725 1.300000e-159 573.0
52 TraesCS3B01G449500 chr3D 93.801 371 21 2 2980 3350 523266517 523266149 1.310000e-154 556.0
53 TraesCS3B01G449500 chr3D 87.723 448 27 12 2565 2996 523299091 523298656 8.070000e-137 497.0
54 TraesCS3B01G449500 chr3D 93.156 263 18 0 1345 1607 523308730 523308468 1.820000e-103 387.0
55 TraesCS3B01G449500 chr3D 83.173 416 50 10 2935 3350 523316829 523316434 3.070000e-96 363.0
56 TraesCS3B01G449500 chr3D 87.008 254 26 4 1767 2014 523318216 523317964 3.180000e-71 279.0
57 TraesCS3B01G449500 chr3D 83.333 258 38 5 1255 1509 523318216 523317961 2.510000e-57 233.0
58 TraesCS3B01G449500 chr3D 76.629 445 68 29 1583 2012 523308992 523308569 3.270000e-51 213.0
59 TraesCS3B01G449500 chr3D 85.052 194 23 4 936 1124 523318599 523318407 4.260000e-45 193.0
60 TraesCS3B01G449500 chr3D 91.129 124 5 5 616 738 523309668 523309550 3.340000e-36 163.0
61 TraesCS3B01G449500 chr3D 91.489 94 8 0 1669 1762 523318377 523318284 3.390000e-26 130.0
62 TraesCS3B01G449500 chr3D 97.826 46 1 0 2463 2508 523299351 523299306 3.460000e-11 80.5
63 TraesCS3B01G449500 chr3D 78.226 124 22 4 282 402 32357441 32357562 1.610000e-09 75.0
64 TraesCS3B01G449500 chr1B 98.333 240 3 1 2226 2464 641330332 641330571 1.800000e-113 420.0
65 TraesCS3B01G449500 chr1B 97.521 242 5 1 2223 2463 14659674 14659915 3.010000e-111 412.0
66 TraesCS3B01G449500 chr1B 90.385 52 3 1 2644 2695 619639723 619639772 2.700000e-07 67.6
67 TraesCS3B01G449500 chrUn 96.774 248 7 1 2217 2463 59805334 59805087 3.010000e-111 412.0
68 TraesCS3B01G449500 chrUn 85.106 188 28 0 77 264 33995342 33995155 4.260000e-45 193.0
69 TraesCS3B01G449500 chrUn 85.106 188 28 0 77 264 293392838 293393025 4.260000e-45 193.0
70 TraesCS3B01G449500 chrUn 88.679 53 3 2 2643 2694 12451818 12451868 1.250000e-05 62.1
71 TraesCS3B01G449500 chr2B 96.371 248 8 1 2217 2463 181755302 181755055 1.400000e-109 407.0
72 TraesCS3B01G449500 chr2B 90.196 51 2 2 2647 2696 438878762 438878714 3.490000e-06 63.9
73 TraesCS3B01G449500 chr4B 95.968 248 9 1 2217 2463 98032113 98032360 6.510000e-108 401.0
74 TraesCS3B01G449500 chr1D 84.737 190 25 4 77 264 242179173 242178986 1.980000e-43 187.0
75 TraesCS3B01G449500 chr1D 87.143 70 3 4 2643 2708 2122258 2122325 1.610000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G449500 chr3B 690103287 690107466 4179 True 7720.000000 7720 100.000000 1 4180 1 chr3B.!!$R5 4179
1 TraesCS3B01G449500 chr3B 765781723 765782230 507 False 773.000000 773 94.106000 3351 3858 1 chr3B.!!$F2 507
2 TraesCS3B01G449500 chr3B 690112525 690115741 3216 True 339.250000 424 84.015000 509 3354 4 chr3B.!!$R8 2845
3 TraesCS3B01G449500 chr3B 690358256 690359155 899 True 227.000000 239 79.804000 666 1506 2 chr3B.!!$R9 840
4 TraesCS3B01G449500 chr3B 689991955 689992583 628 True 225.000000 261 85.151000 936 1492 2 chr3B.!!$R7 556
5 TraesCS3B01G449500 chr7B 99109509 99110338 829 False 1339.000000 1339 95.793000 3351 4180 1 chr7B.!!$F1 829
6 TraesCS3B01G449500 chr7B 608308484 608309297 813 False 1260.000000 1260 94.438000 3351 4177 1 chr7B.!!$F2 826
7 TraesCS3B01G449500 chr5B 291501819 291502639 820 False 1291.000000 1291 94.940000 3351 4180 1 chr5B.!!$F1 829
8 TraesCS3B01G449500 chr5B 532926456 532927263 807 True 1197.000000 1197 93.157000 3351 4180 1 chr5B.!!$R2 829
9 TraesCS3B01G449500 chr6A 5075172 5075997 825 False 1280.000000 1280 94.585000 3351 4180 1 chr6A.!!$F1 829
10 TraesCS3B01G449500 chr1A 541074851 541075674 823 False 1279.000000 1279 94.585000 3351 4180 1 chr1A.!!$F1 829
11 TraesCS3B01G449500 chr1A 558439274 558440099 825 False 1269.000000 1269 94.344000 3351 4180 1 chr1A.!!$F2 829
12 TraesCS3B01G449500 chr3A 730230778 730231604 826 False 1269.000000 1269 94.337000 3351 4180 1 chr3A.!!$F2 829
13 TraesCS3B01G449500 chr7A 651089982 651090806 824 True 1262.000000 1262 94.224000 3351 4180 1 chr7A.!!$R1 829
14 TraesCS3B01G449500 chr7A 726931002 726931829 827 False 1256.000000 1256 94.096000 3354 4180 1 chr7A.!!$F3 826
15 TraesCS3B01G449500 chr4A 164653387 164654211 824 False 1251.000000 1251 93.983000 3351 4180 1 chr4A.!!$F1 829
16 TraesCS3B01G449500 chr2A 763146660 763147468 808 False 1247.000000 1247 94.231000 3351 4180 1 chr2A.!!$F2 829
17 TraesCS3B01G449500 chr2A 720315941 720316768 827 False 1243.000000 1243 93.735000 3351 4180 1 chr2A.!!$F1 829
18 TraesCS3B01G449500 chr2D 548973336 548974167 831 True 1166.000000 1166 92.096000 3354 4180 1 chr2D.!!$R2 826
19 TraesCS3B01G449500 chr5A 568049979 568050786 807 False 1158.000000 1158 92.298000 3351 4180 1 chr5A.!!$F1 829
20 TraesCS3B01G449500 chr3D 523307325 523310420 3095 True 484.166667 793 87.801833 1 2200 6 chr3D.!!$R3 2199
21 TraesCS3B01G449500 chr3D 523298656 523299351 695 True 288.750000 497 92.774500 2463 2996 2 chr3D.!!$R2 533
22 TraesCS3B01G449500 chr3D 523316434 523318599 2165 True 239.600000 363 86.011000 936 3350 5 chr3D.!!$R4 2414

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 429 1.135083 CATTGGAGCGACTTAGACCGT 60.135 52.381 0.00 0.0 0.00 4.83 F
1995 3088 0.459063 CGGCGACCCCAGTAGTAAAC 60.459 60.000 0.00 0.0 0.00 2.01 F
2461 3609 0.039618 TAAACCCGGACGGAGGTAGT 59.960 55.000 13.13 0.0 34.45 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2109 3251 0.246757 CTCGAAATTCGGTCGCAACG 60.247 55.0 15.76 0.0 40.88 4.10 R
3052 6085 0.179067 GTCCACTGTGTTCCCGTGAA 60.179 55.0 7.08 0.0 0.00 3.18 R
3441 6477 1.078709 CGTGATCAACGCAGGTCATT 58.921 50.0 0.00 0.0 46.99 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 110 6.828273 TCAGAATCACGATTATGAATTGGGTT 59.172 34.615 13.25 0.00 43.49 4.11
121 122 4.148838 TGAATTGGGTTGGAGTTTCGATT 58.851 39.130 0.00 0.00 0.00 3.34
130 131 5.175859 GTTGGAGTTTCGATTGTAGGATCA 58.824 41.667 0.00 0.00 0.00 2.92
137 138 7.726216 AGTTTCGATTGTAGGATCACATATCA 58.274 34.615 0.00 0.00 0.00 2.15
222 223 4.840271 AGGGGTTAGTTTGGATCGTAAAG 58.160 43.478 0.00 0.00 0.00 1.85
224 225 4.633126 GGGGTTAGTTTGGATCGTAAAGTC 59.367 45.833 5.09 0.00 0.00 3.01
227 228 5.164022 GGTTAGTTTGGATCGTAAAGTCGTG 60.164 44.000 5.09 0.00 0.00 4.35
233 234 2.787680 GGATCGTAAAGTCGTGGAATCG 59.212 50.000 0.00 0.00 0.00 3.34
236 237 4.621068 TCGTAAAGTCGTGGAATCGTAT 57.379 40.909 0.00 0.00 0.00 3.06
246 247 9.537192 AAGTCGTGGAATCGTATAATAAAATCA 57.463 29.630 0.00 0.00 0.00 2.57
404 411 9.855021 GTGCTAAATGTCTTTAATGGTAAACAT 57.145 29.630 0.00 0.00 43.07 2.71
422 429 1.135083 CATTGGAGCGACTTAGACCGT 60.135 52.381 0.00 0.00 0.00 4.83
448 455 2.187958 AGATCCGGGTCAATGAGTGAA 58.812 47.619 19.03 0.00 38.23 3.18
457 464 4.990426 GGGTCAATGAGTGAAATTTGTTGG 59.010 41.667 0.00 0.00 38.23 3.77
464 471 4.455533 TGAGTGAAATTTGTTGGATCTCCG 59.544 41.667 0.00 0.00 39.43 4.63
478 485 4.338682 TGGATCTCCGTAACTAGCTCTTTC 59.661 45.833 0.00 0.00 39.43 2.62
533 541 4.433186 TGTTTGCCATTGGAATCTTACG 57.567 40.909 6.95 0.00 0.00 3.18
557 565 1.519408 AACTGGTCGGTTTGGATTCG 58.481 50.000 0.00 0.00 0.00 3.34
587 596 5.826601 TCCAAAGCCAATTTTGAAAAACC 57.173 34.783 0.00 0.00 39.79 3.27
633 775 8.732746 TTAAGCTAACTTCAAACTCTCAGTTT 57.267 30.769 0.00 0.00 41.81 2.66
636 778 4.537936 AACTTCAAACTCTCAGTTTCGC 57.462 40.909 0.00 0.00 44.47 4.70
671 815 2.027192 GGACAGGCAAATCAGTGGTCTA 60.027 50.000 0.00 0.00 0.00 2.59
680 824 6.460953 GGCAAATCAGTGGTCTAAAGTCAAAA 60.461 38.462 0.00 0.00 0.00 2.44
681 825 6.638468 GCAAATCAGTGGTCTAAAGTCAAAAG 59.362 38.462 0.00 0.00 0.00 2.27
682 826 7.468631 GCAAATCAGTGGTCTAAAGTCAAAAGA 60.469 37.037 0.00 0.00 0.00 2.52
685 829 7.730364 TCAGTGGTCTAAAGTCAAAAGATTC 57.270 36.000 0.00 0.00 0.00 2.52
686 830 6.423905 TCAGTGGTCTAAAGTCAAAAGATTCG 59.576 38.462 0.00 0.00 0.00 3.34
687 831 5.179555 AGTGGTCTAAAGTCAAAAGATTCGC 59.820 40.000 0.00 0.00 0.00 4.70
688 832 4.151689 TGGTCTAAAGTCAAAAGATTCGCG 59.848 41.667 0.00 0.00 0.00 5.87
689 833 4.151867 GGTCTAAAGTCAAAAGATTCGCGT 59.848 41.667 5.77 0.00 0.00 6.01
690 834 5.306590 GTCTAAAGTCAAAAGATTCGCGTC 58.693 41.667 5.77 0.00 0.00 5.19
691 835 2.856091 AAGTCAAAAGATTCGCGTCG 57.144 45.000 5.77 0.00 0.00 5.12
692 836 2.060326 AGTCAAAAGATTCGCGTCGA 57.940 45.000 5.77 0.00 0.00 4.20
693 837 2.607187 AGTCAAAAGATTCGCGTCGAT 58.393 42.857 5.77 0.00 35.23 3.59
694 838 2.599082 AGTCAAAAGATTCGCGTCGATC 59.401 45.455 5.77 8.80 35.23 3.69
695 839 1.582052 TCAAAAGATTCGCGTCGATCG 59.418 47.619 9.36 9.36 43.12 3.69
761 1194 6.210287 ACTGAAGTAGGTACTGAATACTGC 57.790 41.667 0.00 0.00 41.52 4.40
789 1223 2.749621 CAGAACATGTTACTTGGGAGCC 59.250 50.000 11.95 0.00 0.00 4.70
790 1224 2.375174 AGAACATGTTACTTGGGAGCCA 59.625 45.455 11.95 0.00 0.00 4.75
791 1225 2.969821 ACATGTTACTTGGGAGCCAA 57.030 45.000 0.00 0.00 41.69 4.52
792 1226 3.456380 ACATGTTACTTGGGAGCCAAT 57.544 42.857 0.00 0.00 43.07 3.16
813 1247 8.457261 GCCAATCAATTTACCAATATTTTGCAA 58.543 29.630 0.00 0.00 0.00 4.08
817 1251 9.941325 ATCAATTTACCAATATTTTGCAACTCA 57.059 25.926 0.00 0.00 0.00 3.41
818 1252 9.421806 TCAATTTACCAATATTTTGCAACTCAG 57.578 29.630 0.00 0.00 0.00 3.35
820 1254 9.995003 AATTTACCAATATTTTGCAACTCAGAA 57.005 25.926 0.00 0.00 0.00 3.02
821 1255 8.810652 TTTACCAATATTTTGCAACTCAGAAC 57.189 30.769 0.00 0.00 0.00 3.01
823 1257 6.681777 ACCAATATTTTGCAACTCAGAACTC 58.318 36.000 0.00 0.00 0.00 3.01
824 1258 6.265196 ACCAATATTTTGCAACTCAGAACTCA 59.735 34.615 0.00 0.00 0.00 3.41
825 1259 6.805271 CCAATATTTTGCAACTCAGAACTCAG 59.195 38.462 0.00 0.00 0.00 3.35
826 1260 7.308770 CCAATATTTTGCAACTCAGAACTCAGA 60.309 37.037 0.00 0.00 0.00 3.27
829 1263 3.541996 TGCAACTCAGAACTCAGAACA 57.458 42.857 0.00 0.00 0.00 3.18
837 1271 5.163258 ACTCAGAACTCAGAACACCTCAATT 60.163 40.000 0.00 0.00 0.00 2.32
838 1272 6.042093 ACTCAGAACTCAGAACACCTCAATTA 59.958 38.462 0.00 0.00 0.00 1.40
841 1275 6.708054 CAGAACTCAGAACACCTCAATTAACT 59.292 38.462 0.00 0.00 0.00 2.24
849 1283 4.833390 ACACCTCAATTAACTGTAGCTCC 58.167 43.478 0.00 0.00 0.00 4.70
857 1291 8.079211 TCAATTAACTGTAGCTCCTAGTCAAT 57.921 34.615 0.00 0.00 0.00 2.57
888 1331 2.322355 GCTCTGCTCAGCTAATCCAA 57.678 50.000 0.00 0.00 36.38 3.53
895 1338 7.148440 GCTCTGCTCAGCTAATCCAAAATATAG 60.148 40.741 0.00 0.00 36.38 1.31
896 1339 7.164122 TCTGCTCAGCTAATCCAAAATATAGG 58.836 38.462 0.00 0.00 0.00 2.57
897 1340 7.016563 TCTGCTCAGCTAATCCAAAATATAGGA 59.983 37.037 0.00 0.00 38.50 2.94
898 1341 7.164122 TGCTCAGCTAATCCAAAATATAGGAG 58.836 38.462 0.00 0.00 37.34 3.69
899 1342 7.164803 GCTCAGCTAATCCAAAATATAGGAGT 58.835 38.462 0.00 0.00 37.34 3.85
900 1343 8.314751 GCTCAGCTAATCCAAAATATAGGAGTA 58.685 37.037 0.00 0.00 37.34 2.59
925 1368 8.830201 ATATAGTAGTACTACTTGTGAGACGG 57.170 38.462 34.30 0.00 43.35 4.79
931 1374 8.789684 GTAGTACTACTTGTGAGACGGAGTACC 61.790 48.148 23.17 0.00 38.92 3.34
946 1389 1.551883 AGTACCGTTTAACCTCGCCAT 59.448 47.619 0.00 0.00 0.00 4.40
955 1399 5.238583 GTTTAACCTCGCCATATAGAGCAT 58.761 41.667 0.00 0.00 33.39 3.79
959 1403 3.517100 ACCTCGCCATATAGAGCATCATT 59.483 43.478 0.00 0.00 37.82 2.57
982 1426 4.703093 TCTCCCGTTAATCAAACCCAAATC 59.297 41.667 0.00 0.00 34.33 2.17
1045 1497 2.994995 TCGCAAAGCTCCTCCCGA 60.995 61.111 0.00 0.00 0.00 5.14
1046 1498 2.187946 CGCAAAGCTCCTCCCGAT 59.812 61.111 0.00 0.00 0.00 4.18
1054 1506 1.834378 CTCCTCCCGATGCTAGCCA 60.834 63.158 13.29 0.24 0.00 4.75
1170 1622 2.179018 TACGAGGCCAACGTACGC 59.821 61.111 24.12 0.00 43.62 4.42
1179 1631 1.138047 CCAACGTACGCCATCTCGTC 61.138 60.000 16.72 0.00 43.15 4.20
1199 1651 1.683365 CCACCATTCCTGCCAAGGG 60.683 63.158 0.00 0.00 44.62 3.95
1237 1689 1.215423 GGTATGGGGAATCCTGCAAGT 59.785 52.381 0.00 0.00 36.20 3.16
1278 1730 2.671682 GAGAGCCCCAACCTGGTC 59.328 66.667 0.00 0.00 35.17 4.02
1341 1793 4.527157 GACTGCGGCGCTTGCATC 62.527 66.667 33.26 17.89 42.32 3.91
1389 1841 2.045131 GTGCCCGTACGAGAGGAGT 61.045 63.158 18.76 0.00 0.00 3.85
1454 1906 2.161808 ACTTCCACGACTACGACATCAG 59.838 50.000 0.00 0.00 42.66 2.90
1472 1924 1.300697 GGGAGCAGTTCGTTCACGT 60.301 57.895 0.00 0.00 40.80 4.49
1520 1972 7.979786 TCTATCTCTCCCAATACTTGTCTTT 57.020 36.000 0.00 0.00 0.00 2.52
1570 2022 1.767759 TCTCACGATCTCATCCTGCA 58.232 50.000 0.00 0.00 0.00 4.41
1571 2023 2.102578 TCTCACGATCTCATCCTGCAA 58.897 47.619 0.00 0.00 0.00 4.08
1575 2027 0.935898 CGATCTCATCCTGCAAGCAC 59.064 55.000 0.00 0.00 0.00 4.40
1641 2626 2.885113 CCTCCGACGACAGCATGA 59.115 61.111 0.00 0.00 39.69 3.07
1667 2652 2.032528 CCCAGTCACATGTGCGGT 59.967 61.111 21.38 4.81 0.00 5.68
1763 2850 1.398041 CTGAATGCGAAATCCAGCGAA 59.602 47.619 0.00 0.00 35.87 4.70
1946 3039 2.095853 CGCGTGCAAATTCTACTTCCAT 59.904 45.455 0.00 0.00 0.00 3.41
1995 3088 0.459063 CGGCGACCCCAGTAGTAAAC 60.459 60.000 0.00 0.00 0.00 2.01
1996 3089 0.900421 GGCGACCCCAGTAGTAAACT 59.100 55.000 0.00 0.00 39.81 2.66
1997 3090 1.134877 GGCGACCCCAGTAGTAAACTC 60.135 57.143 0.00 0.00 35.76 3.01
1998 3091 1.823610 GCGACCCCAGTAGTAAACTCT 59.176 52.381 0.00 0.00 35.76 3.24
1999 3092 2.159268 GCGACCCCAGTAGTAAACTCTC 60.159 54.545 0.00 0.00 35.76 3.20
2000 3093 3.354467 CGACCCCAGTAGTAAACTCTCT 58.646 50.000 0.00 0.00 35.76 3.10
2001 3094 3.377798 CGACCCCAGTAGTAAACTCTCTC 59.622 52.174 0.00 0.00 35.76 3.20
2002 3095 4.602107 GACCCCAGTAGTAAACTCTCTCT 58.398 47.826 0.00 0.00 35.76 3.10
2003 3096 4.602107 ACCCCAGTAGTAAACTCTCTCTC 58.398 47.826 0.00 0.00 35.76 3.20
2004 3097 4.292836 ACCCCAGTAGTAAACTCTCTCTCT 59.707 45.833 0.00 0.00 35.76 3.10
2005 3098 4.885325 CCCCAGTAGTAAACTCTCTCTCTC 59.115 50.000 0.00 0.00 35.76 3.20
2006 3099 5.339695 CCCCAGTAGTAAACTCTCTCTCTCT 60.340 48.000 0.00 0.00 35.76 3.10
2007 3100 5.820947 CCCAGTAGTAAACTCTCTCTCTCTC 59.179 48.000 0.00 0.00 35.76 3.20
2008 3101 6.352737 CCCAGTAGTAAACTCTCTCTCTCTCT 60.353 46.154 0.00 0.00 35.76 3.10
2009 3102 6.761714 CCAGTAGTAAACTCTCTCTCTCTCTC 59.238 46.154 0.00 0.00 35.76 3.20
2010 3103 7.364762 CCAGTAGTAAACTCTCTCTCTCTCTCT 60.365 44.444 0.00 0.00 35.76 3.10
2011 3104 7.707035 CAGTAGTAAACTCTCTCTCTCTCTCTC 59.293 44.444 0.00 0.00 35.76 3.20
2012 3105 6.875972 AGTAAACTCTCTCTCTCTCTCTCT 57.124 41.667 0.00 0.00 0.00 3.10
2013 3106 6.879400 AGTAAACTCTCTCTCTCTCTCTCTC 58.121 44.000 0.00 0.00 0.00 3.20
2014 3107 6.670027 AGTAAACTCTCTCTCTCTCTCTCTCT 59.330 42.308 0.00 0.00 0.00 3.10
2015 3108 5.606348 AACTCTCTCTCTCTCTCTCTCTC 57.394 47.826 0.00 0.00 0.00 3.20
2016 3109 4.877773 ACTCTCTCTCTCTCTCTCTCTCT 58.122 47.826 0.00 0.00 0.00 3.10
2017 3110 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
2018 3111 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2019 3112 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2020 3113 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2021 3114 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2022 3115 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2023 3116 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2024 3117 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2081 3195 7.703621 CACACACAAGATCTCAAAGAACAAAAT 59.296 33.333 0.00 0.00 0.00 1.82
2084 3198 9.736023 ACACAAGATCTCAAAGAACAAAATTAC 57.264 29.630 0.00 0.00 0.00 1.89
2085 3199 9.734620 CACAAGATCTCAAAGAACAAAATTACA 57.265 29.630 0.00 0.00 0.00 2.41
2097 3239 8.396272 AGAACAAAATTACATCACTTGCTACT 57.604 30.769 0.00 0.00 0.00 2.57
2099 3241 9.118236 GAACAAAATTACATCACTTGCTACTTC 57.882 33.333 0.00 0.00 0.00 3.01
2109 3251 1.461127 CTTGCTACTTCACAACCGAGC 59.539 52.381 0.00 0.00 0.00 5.03
2111 3253 0.666577 GCTACTTCACAACCGAGCGT 60.667 55.000 0.00 0.00 0.00 5.07
2138 3280 5.286797 CGACCGAATTTCGAGTAACATTACA 59.713 40.000 19.91 0.00 43.74 2.41
2162 3304 4.499696 GGTTGTCAGTCCCAAATTCAGTTG 60.500 45.833 0.00 0.00 0.00 3.16
2200 3342 4.219115 TGGCAAAAGAACATTGGTTAGGA 58.781 39.130 0.00 0.00 37.36 2.94
2201 3343 4.837860 TGGCAAAAGAACATTGGTTAGGAT 59.162 37.500 0.00 0.00 37.36 3.24
2210 3352 7.806180 AGAACATTGGTTAGGATGCTATACTT 58.194 34.615 0.00 0.00 37.36 2.24
2212 3354 7.807977 ACATTGGTTAGGATGCTATACTTTG 57.192 36.000 0.00 0.00 0.00 2.77
2237 3385 9.658799 TGTATATACAGTAATACTACCTCCGTC 57.341 37.037 11.62 0.00 31.24 4.79
2238 3386 9.103861 GTATATACAGTAATACTACCTCCGTCC 57.896 40.741 8.05 0.00 0.00 4.79
2239 3387 4.516652 ACAGTAATACTACCTCCGTCCT 57.483 45.455 0.00 0.00 0.00 3.85
2240 3388 4.205587 ACAGTAATACTACCTCCGTCCTG 58.794 47.826 0.00 0.00 0.00 3.86
2241 3389 3.568853 CAGTAATACTACCTCCGTCCTGG 59.431 52.174 0.00 0.00 40.09 4.45
2242 3390 2.842645 AATACTACCTCCGTCCTGGT 57.157 50.000 0.00 0.00 39.52 4.00
2243 3391 2.842645 ATACTACCTCCGTCCTGGTT 57.157 50.000 0.00 0.00 39.52 3.67
2244 3392 2.610438 TACTACCTCCGTCCTGGTTT 57.390 50.000 0.00 0.00 39.52 3.27
2245 3393 2.610438 ACTACCTCCGTCCTGGTTTA 57.390 50.000 0.00 0.00 39.52 2.01
2246 3394 3.111741 ACTACCTCCGTCCTGGTTTAT 57.888 47.619 0.00 0.00 39.52 1.40
2247 3395 4.255510 ACTACCTCCGTCCTGGTTTATA 57.744 45.455 0.00 0.00 39.52 0.98
2248 3396 4.213513 ACTACCTCCGTCCTGGTTTATAG 58.786 47.826 0.00 0.00 39.52 1.31
2249 3397 2.395619 ACCTCCGTCCTGGTTTATAGG 58.604 52.381 0.00 0.00 39.52 2.57
2250 3398 2.292719 ACCTCCGTCCTGGTTTATAGGT 60.293 50.000 0.00 0.00 35.62 3.08
2251 3399 2.364647 CCTCCGTCCTGGTTTATAGGTC 59.635 54.545 0.00 0.00 39.52 3.85
2252 3400 3.297736 CTCCGTCCTGGTTTATAGGTCT 58.702 50.000 0.00 0.00 39.52 3.85
2253 3401 3.294214 TCCGTCCTGGTTTATAGGTCTC 58.706 50.000 0.00 0.00 39.52 3.36
2254 3402 2.364647 CCGTCCTGGTTTATAGGTCTCC 59.635 54.545 0.00 0.00 36.67 3.71
2255 3403 3.297736 CGTCCTGGTTTATAGGTCTCCT 58.702 50.000 0.00 0.00 36.67 3.69
2256 3404 3.705072 CGTCCTGGTTTATAGGTCTCCTT 59.295 47.826 0.00 0.00 36.67 3.36
2257 3405 4.161754 CGTCCTGGTTTATAGGTCTCCTTT 59.838 45.833 0.00 0.00 36.67 3.11
2258 3406 5.429130 GTCCTGGTTTATAGGTCTCCTTTG 58.571 45.833 0.00 0.00 36.67 2.77
2259 3407 5.045797 GTCCTGGTTTATAGGTCTCCTTTGT 60.046 44.000 0.00 0.00 36.67 2.83
2260 3408 6.155737 GTCCTGGTTTATAGGTCTCCTTTGTA 59.844 42.308 0.00 0.00 36.67 2.41
2261 3409 6.383147 TCCTGGTTTATAGGTCTCCTTTGTAG 59.617 42.308 0.00 0.00 36.67 2.74
2262 3410 6.156429 CCTGGTTTATAGGTCTCCTTTGTAGT 59.844 42.308 0.00 0.00 34.61 2.73
2263 3411 7.311109 CCTGGTTTATAGGTCTCCTTTGTAGTT 60.311 40.741 0.00 0.00 34.61 2.24
2264 3412 7.981142 TGGTTTATAGGTCTCCTTTGTAGTTT 58.019 34.615 0.00 0.00 34.61 2.66
2265 3413 7.881232 TGGTTTATAGGTCTCCTTTGTAGTTTG 59.119 37.037 0.00 0.00 34.61 2.93
2266 3414 7.881751 GGTTTATAGGTCTCCTTTGTAGTTTGT 59.118 37.037 0.00 0.00 34.61 2.83
2267 3415 8.718734 GTTTATAGGTCTCCTTTGTAGTTTGTG 58.281 37.037 0.00 0.00 34.61 3.33
2268 3416 3.477530 AGGTCTCCTTTGTAGTTTGTGC 58.522 45.455 0.00 0.00 0.00 4.57
2269 3417 2.552743 GGTCTCCTTTGTAGTTTGTGCC 59.447 50.000 0.00 0.00 0.00 5.01
2270 3418 3.211045 GTCTCCTTTGTAGTTTGTGCCA 58.789 45.455 0.00 0.00 0.00 4.92
2271 3419 3.630312 GTCTCCTTTGTAGTTTGTGCCAA 59.370 43.478 0.00 0.00 0.00 4.52
2272 3420 4.097286 GTCTCCTTTGTAGTTTGTGCCAAA 59.903 41.667 0.00 0.00 0.00 3.28
2273 3421 4.892934 TCTCCTTTGTAGTTTGTGCCAAAT 59.107 37.500 4.07 0.00 0.00 2.32
2274 3422 5.362430 TCTCCTTTGTAGTTTGTGCCAAATT 59.638 36.000 4.07 3.14 0.00 1.82
2275 3423 5.983540 TCCTTTGTAGTTTGTGCCAAATTT 58.016 33.333 4.07 0.00 0.00 1.82
2276 3424 6.410540 TCCTTTGTAGTTTGTGCCAAATTTT 58.589 32.000 4.07 0.00 0.00 1.82
2277 3425 6.314896 TCCTTTGTAGTTTGTGCCAAATTTTG 59.685 34.615 1.99 1.99 0.00 2.44
2278 3426 6.314896 CCTTTGTAGTTTGTGCCAAATTTTGA 59.685 34.615 10.72 0.00 0.00 2.69
2279 3427 6.654793 TTGTAGTTTGTGCCAAATTTTGAC 57.345 33.333 10.72 0.00 0.00 3.18
2280 3428 5.971763 TGTAGTTTGTGCCAAATTTTGACT 58.028 33.333 10.72 7.29 0.00 3.41
2281 3429 7.101652 TGTAGTTTGTGCCAAATTTTGACTA 57.898 32.000 10.72 6.41 0.00 2.59
2282 3430 7.548097 TGTAGTTTGTGCCAAATTTTGACTAA 58.452 30.769 10.72 2.90 0.00 2.24
2283 3431 8.035394 TGTAGTTTGTGCCAAATTTTGACTAAA 58.965 29.630 10.72 2.25 0.00 1.85
2284 3432 7.538303 AGTTTGTGCCAAATTTTGACTAAAG 57.462 32.000 10.72 0.00 0.00 1.85
2285 3433 7.327214 AGTTTGTGCCAAATTTTGACTAAAGA 58.673 30.769 10.72 0.00 0.00 2.52
2286 3434 7.986889 AGTTTGTGCCAAATTTTGACTAAAGAT 59.013 29.630 10.72 0.00 0.00 2.40
2287 3435 8.611757 GTTTGTGCCAAATTTTGACTAAAGATT 58.388 29.630 10.72 0.00 0.00 2.40
2288 3436 8.729805 TTGTGCCAAATTTTGACTAAAGATTT 57.270 26.923 10.72 0.00 0.00 2.17
2289 3437 9.823647 TTGTGCCAAATTTTGACTAAAGATTTA 57.176 25.926 10.72 0.00 0.00 1.40
2290 3438 9.823647 TGTGCCAAATTTTGACTAAAGATTTAA 57.176 25.926 10.72 0.00 0.00 1.52
2315 3463 9.539825 AACTAACAAAATGTTAATGCATGTCAA 57.460 25.926 0.00 0.00 41.70 3.18
2316 3464 9.195411 ACTAACAAAATGTTAATGCATGTCAAG 57.805 29.630 0.00 0.00 41.70 3.02
2317 3465 9.409312 CTAACAAAATGTTAATGCATGTCAAGA 57.591 29.630 0.00 0.00 41.70 3.02
2318 3466 8.659925 AACAAAATGTTAATGCATGTCAAGAA 57.340 26.923 0.00 0.00 39.09 2.52
2319 3467 8.659925 ACAAAATGTTAATGCATGTCAAGAAA 57.340 26.923 0.00 0.00 0.00 2.52
2320 3468 9.107177 ACAAAATGTTAATGCATGTCAAGAAAA 57.893 25.926 0.00 0.00 0.00 2.29
2321 3469 9.932699 CAAAATGTTAATGCATGTCAAGAAAAA 57.067 25.926 0.00 0.00 0.00 1.94
2333 3481 9.763465 GCATGTCAAGAAAAATTATTTCATTGG 57.237 29.630 12.51 3.49 0.00 3.16
2380 3528 9.149225 TCAAAAATATAATGTTTGGTGACATGC 57.851 29.630 0.00 0.00 40.03 4.06
2381 3529 7.754069 AAAATATAATGTTTGGTGACATGCG 57.246 32.000 0.00 0.00 40.03 4.73
2382 3530 6.449635 AATATAATGTTTGGTGACATGCGT 57.550 33.333 0.00 0.00 40.03 5.24
2383 3531 2.420628 AATGTTTGGTGACATGCGTG 57.579 45.000 3.82 3.82 40.03 5.34
2384 3532 1.603456 ATGTTTGGTGACATGCGTGA 58.397 45.000 14.17 0.00 42.32 4.35
2385 3533 1.383523 TGTTTGGTGACATGCGTGAA 58.616 45.000 14.17 0.00 42.32 3.18
2386 3534 1.064803 TGTTTGGTGACATGCGTGAAC 59.935 47.619 14.17 10.22 42.32 3.18
2387 3535 1.064803 GTTTGGTGACATGCGTGAACA 59.935 47.619 14.17 9.53 42.32 3.18
2388 3536 1.603456 TTGGTGACATGCGTGAACAT 58.397 45.000 14.17 0.00 42.32 2.71
2389 3537 1.603456 TGGTGACATGCGTGAACATT 58.397 45.000 14.17 0.00 33.40 2.71
2390 3538 1.952990 TGGTGACATGCGTGAACATTT 59.047 42.857 14.17 0.00 33.40 2.32
2391 3539 2.360483 TGGTGACATGCGTGAACATTTT 59.640 40.909 14.17 0.00 33.40 1.82
2392 3540 2.725723 GGTGACATGCGTGAACATTTTG 59.274 45.455 14.17 0.00 0.00 2.44
2393 3541 3.371168 GTGACATGCGTGAACATTTTGT 58.629 40.909 14.17 0.00 0.00 2.83
2394 3542 3.796178 GTGACATGCGTGAACATTTTGTT 59.204 39.130 14.17 0.00 44.37 2.83
2395 3543 4.973051 GTGACATGCGTGAACATTTTGTTA 59.027 37.500 14.17 0.00 41.28 2.41
2396 3544 5.115472 GTGACATGCGTGAACATTTTGTTAG 59.885 40.000 14.17 0.00 41.28 2.34
2397 3545 5.181690 ACATGCGTGAACATTTTGTTAGT 57.818 34.783 14.17 0.00 41.28 2.24
2398 3546 5.587289 ACATGCGTGAACATTTTGTTAGTT 58.413 33.333 14.17 0.00 41.28 2.24
2399 3547 6.039616 ACATGCGTGAACATTTTGTTAGTTT 58.960 32.000 14.17 0.00 41.28 2.66
2400 3548 7.197017 ACATGCGTGAACATTTTGTTAGTTTA 58.803 30.769 14.17 0.00 41.28 2.01
2401 3549 7.702772 ACATGCGTGAACATTTTGTTAGTTTAA 59.297 29.630 14.17 0.00 41.28 1.52
2402 3550 8.698854 CATGCGTGAACATTTTGTTAGTTTAAT 58.301 29.630 0.00 0.00 41.28 1.40
2403 3551 8.276060 TGCGTGAACATTTTGTTAGTTTAATC 57.724 30.769 0.00 0.00 41.28 1.75
2404 3552 8.132362 TGCGTGAACATTTTGTTAGTTTAATCT 58.868 29.630 0.00 0.00 41.28 2.40
2405 3553 9.601971 GCGTGAACATTTTGTTAGTTTAATCTA 57.398 29.630 0.00 0.00 41.28 1.98
2431 3579 9.941325 ATGGTCAAAATTTAGCATGAAATACAA 57.059 25.926 0.00 0.00 32.84 2.41
2432 3580 9.941325 TGGTCAAAATTTAGCATGAAATACAAT 57.059 25.926 0.00 0.00 0.00 2.71
2435 3583 9.381033 TCAAAATTTAGCATGAAATACAATGGG 57.619 29.630 0.00 0.00 0.00 4.00
2436 3584 8.614346 CAAAATTTAGCATGAAATACAATGGGG 58.386 33.333 0.00 0.00 0.00 4.96
2437 3585 7.673641 AATTTAGCATGAAATACAATGGGGA 57.326 32.000 0.00 0.00 0.00 4.81
2438 3586 6.463995 TTTAGCATGAAATACAATGGGGAC 57.536 37.500 0.00 0.00 0.00 4.46
2452 3600 3.179925 GGGACCAATAAACCCGGAC 57.820 57.895 0.73 0.00 34.03 4.79
2453 3601 0.745486 GGGACCAATAAACCCGGACG 60.745 60.000 0.73 0.00 34.03 4.79
2454 3602 0.745486 GGACCAATAAACCCGGACGG 60.745 60.000 0.73 3.25 37.81 4.79
2455 3603 0.249955 GACCAATAAACCCGGACGGA 59.750 55.000 13.13 0.00 37.50 4.69
2456 3604 0.251073 ACCAATAAACCCGGACGGAG 59.749 55.000 13.13 5.04 37.50 4.63
2457 3605 0.463116 CCAATAAACCCGGACGGAGG 60.463 60.000 13.13 0.00 37.50 4.30
2458 3606 0.251073 CAATAAACCCGGACGGAGGT 59.749 55.000 13.13 0.00 38.27 3.85
2459 3607 1.481772 CAATAAACCCGGACGGAGGTA 59.518 52.381 13.13 1.24 34.45 3.08
2460 3608 1.406903 ATAAACCCGGACGGAGGTAG 58.593 55.000 13.13 0.00 34.45 3.18
2461 3609 0.039618 TAAACCCGGACGGAGGTAGT 59.960 55.000 13.13 0.00 34.45 2.73
2477 3625 8.435982 ACGGAGGTAGTAGAGTATAAAGTATGT 58.564 37.037 0.00 0.00 0.00 2.29
2543 3694 5.742453 CACATCACGGTCACTATAGTGTAAC 59.258 44.000 27.83 20.47 45.76 2.50
2602 3932 6.990939 TCTTTAGCTCTCGTATAGAACTAGCA 59.009 38.462 0.00 0.00 34.99 3.49
2619 3949 9.102757 AGAACTAGCAATATGTTGATTACTGTG 57.897 33.333 6.35 0.00 37.53 3.66
2643 3983 2.559381 AGATCCTGCCTCCACTACTT 57.441 50.000 0.00 0.00 0.00 2.24
2688 4030 9.856162 TTTCAATCTATTCATCTCCAATCATGA 57.144 29.630 0.00 0.00 0.00 3.07
2698 4040 9.904198 TTCATCTCCAATCATGATAGTACAAAA 57.096 29.630 9.04 0.00 0.00 2.44
2699 4041 9.330063 TCATCTCCAATCATGATAGTACAAAAC 57.670 33.333 9.04 0.00 0.00 2.43
2700 4042 9.334947 CATCTCCAATCATGATAGTACAAAACT 57.665 33.333 9.04 0.00 42.62 2.66
2702 4044 9.817809 TCTCCAATCATGATAGTACAAAACTAC 57.182 33.333 9.04 0.00 43.47 2.73
2703 4045 9.599866 CTCCAATCATGATAGTACAAAACTACA 57.400 33.333 9.04 0.00 43.47 2.74
2704 4046 9.952030 TCCAATCATGATAGTACAAAACTACAA 57.048 29.630 9.04 0.00 43.47 2.41
2755 4102 3.474570 GGCCGGCTCCAGATCAGT 61.475 66.667 28.56 0.00 0.00 3.41
2756 4103 2.134287 GGCCGGCTCCAGATCAGTA 61.134 63.158 28.56 0.00 0.00 2.74
2796 4143 7.509236 AATTATAAGGGGCCTGAACATTTTT 57.491 32.000 0.84 0.00 0.00 1.94
2933 5965 8.846211 GCATTAGGCTAATAACATTAAAGGACA 58.154 33.333 18.86 0.00 40.25 4.02
3052 6085 5.441718 AAATCCATGTGTGTAGGTGATCT 57.558 39.130 0.00 0.00 0.00 2.75
3055 6088 3.837731 TCCATGTGTGTAGGTGATCTTCA 59.162 43.478 0.00 0.00 0.00 3.02
3056 6089 3.935203 CCATGTGTGTAGGTGATCTTCAC 59.065 47.826 0.00 0.00 46.23 3.18
3066 6099 2.069273 GTGATCTTCACGGGAACACAG 58.931 52.381 13.15 0.00 37.67 3.66
3067 6100 1.691976 TGATCTTCACGGGAACACAGT 59.308 47.619 0.00 0.00 0.00 3.55
3076 6109 1.600916 GGAACACAGTGGACCAGGC 60.601 63.158 5.31 0.00 0.00 4.85
3078 6111 3.476031 AACACAGTGGACCAGGCCG 62.476 63.158 5.31 0.00 0.00 6.13
3098 6131 1.947146 GGGCGTTGTTGCGGAAAAC 60.947 57.895 0.00 0.00 35.06 2.43
3113 6146 3.986277 GGAAAACGAGGAGAACAGTACA 58.014 45.455 0.00 0.00 0.00 2.90
3118 6151 5.470047 AACGAGGAGAACAGTACAAGAAT 57.530 39.130 0.00 0.00 0.00 2.40
3120 6153 4.177026 CGAGGAGAACAGTACAAGAATGG 58.823 47.826 0.00 0.00 0.00 3.16
3125 6158 4.848357 AGAACAGTACAAGAATGGGATGG 58.152 43.478 0.00 0.00 0.00 3.51
3131 6164 1.007479 ACAAGAATGGGATGGGCATGT 59.993 47.619 0.00 0.00 0.00 3.21
3133 6166 0.928505 AGAATGGGATGGGCATGTCA 59.071 50.000 0.00 0.00 0.00 3.58
3164 6197 8.348944 TGGAGACAACGATCATGGAGATCTTC 62.349 46.154 0.00 0.00 44.08 2.87
3176 6209 1.740025 GAGATCTTCGCAAACCTTGGG 59.260 52.381 0.00 0.00 44.15 4.12
3178 6211 2.304761 AGATCTTCGCAAACCTTGGGTA 59.695 45.455 0.00 0.00 43.36 3.69
3203 6236 7.398024 AGGTGTCTAATAGAAGAATTTGTGCT 58.602 34.615 0.00 0.00 0.00 4.40
3283 6316 5.630121 TCTTTTAAATCAGTTGGAGGCTGA 58.370 37.500 0.00 0.00 45.59 4.26
3285 6318 6.549364 TCTTTTAAATCAGTTGGAGGCTGAAA 59.451 34.615 0.00 0.00 44.82 2.69
3286 6319 5.705609 TTAAATCAGTTGGAGGCTGAAAC 57.294 39.130 0.00 0.00 44.82 2.78
3287 6320 3.515602 AATCAGTTGGAGGCTGAAACT 57.484 42.857 0.00 0.00 44.82 2.66
3288 6321 4.640771 AATCAGTTGGAGGCTGAAACTA 57.359 40.909 10.23 2.45 44.82 2.24
3304 6337 9.601217 GGCTGAAACTATATGTAATAATCGGAT 57.399 33.333 0.00 0.00 29.06 4.18
3318 6351 3.777106 ATCGGATGGTTGAGCATATGT 57.223 42.857 4.29 0.00 0.00 2.29
3329 6362 7.389232 TGGTTGAGCATATGTATTATGGAGAG 58.611 38.462 4.29 0.00 38.53 3.20
3331 6364 7.547370 GGTTGAGCATATGTATTATGGAGAGAC 59.453 40.741 4.29 0.00 38.53 3.36
3431 6464 4.745751 TCCCCGTCGCGCGAATTT 62.746 61.111 36.57 0.00 44.77 1.82
3432 6465 3.795342 CCCCGTCGCGCGAATTTT 61.795 61.111 36.57 0.00 44.77 1.82
3474 6510 2.909457 ATCACGCGGCCCATTCCAAT 62.909 55.000 12.47 0.00 0.00 3.16
3758 6795 0.323087 TCCGTGATCAACCTCTCCGA 60.323 55.000 0.00 0.00 0.00 4.55
3775 6812 2.672307 AGAACGTCCTCGCCGTCT 60.672 61.111 0.00 0.00 41.18 4.18
4046 7090 2.364324 GTGAGTGGGATGGTAGCGATAA 59.636 50.000 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.029380 TGCACATACACGACTGCTAGTT 60.029 45.455 0.00 0.00 0.00 2.24
23 24 1.544246 TGCACATACACGACTGCTAGT 59.456 47.619 0.00 0.00 0.00 2.57
92 93 4.855340 ACTCCAACCCAATTCATAATCGT 58.145 39.130 0.00 0.00 0.00 3.73
109 110 4.221924 TGTGATCCTACAATCGAAACTCCA 59.778 41.667 0.00 0.00 0.00 3.86
189 190 6.964086 TCCAAACTAACCCCTCTAATTCTACT 59.036 38.462 0.00 0.00 0.00 2.57
196 197 4.098894 ACGATCCAAACTAACCCCTCTAA 58.901 43.478 0.00 0.00 0.00 2.10
200 201 4.287845 ACTTTACGATCCAAACTAACCCCT 59.712 41.667 0.00 0.00 0.00 4.79
222 223 7.943065 CGTGATTTTATTATACGATTCCACGAC 59.057 37.037 0.00 0.00 43.19 4.34
224 225 7.999213 TCGTGATTTTATTATACGATTCCACG 58.001 34.615 0.00 0.00 42.29 4.94
236 237 8.786826 AGGTTGTCAGAATCGTGATTTTATTA 57.213 30.769 0.00 0.00 0.00 0.98
246 247 4.389374 ACAATCAAGGTTGTCAGAATCGT 58.611 39.130 0.00 0.00 37.80 3.73
374 381 9.515226 TTACCATTAAAGACATTTAGCACTCTT 57.485 29.630 0.00 0.00 32.58 2.85
386 393 6.348950 CGCTCCAATGTTTACCATTAAAGACA 60.349 38.462 0.00 0.00 41.93 3.41
387 394 6.027749 CGCTCCAATGTTTACCATTAAAGAC 58.972 40.000 0.00 0.00 41.93 3.01
404 411 0.963962 AACGGTCTAAGTCGCTCCAA 59.036 50.000 0.00 0.00 0.00 3.53
436 443 7.373493 AGATCCAACAAATTTCACTCATTGAC 58.627 34.615 0.00 0.00 32.26 3.18
438 445 6.810182 GGAGATCCAACAAATTTCACTCATTG 59.190 38.462 0.00 0.00 35.64 2.82
441 448 4.455533 CGGAGATCCAACAAATTTCACTCA 59.544 41.667 0.00 0.00 35.14 3.41
448 455 5.585047 GCTAGTTACGGAGATCCAACAAATT 59.415 40.000 0.00 0.00 35.14 1.82
457 464 5.761165 AGAAAGAGCTAGTTACGGAGATC 57.239 43.478 0.00 0.00 0.00 2.75
495 502 8.753497 TGGCAAACAACCCTTTTTATTTTTAT 57.247 26.923 0.00 0.00 0.00 1.40
496 503 8.753497 ATGGCAAACAACCCTTTTTATTTTTA 57.247 26.923 0.00 0.00 0.00 1.52
500 507 5.534278 CCAATGGCAAACAACCCTTTTTATT 59.466 36.000 0.00 0.00 0.00 1.40
502 509 4.164221 TCCAATGGCAAACAACCCTTTTTA 59.836 37.500 0.00 0.00 0.00 1.52
505 512 2.122768 TCCAATGGCAAACAACCCTTT 58.877 42.857 0.00 0.00 0.00 3.11
507 514 1.799933 TTCCAATGGCAAACAACCCT 58.200 45.000 0.00 0.00 0.00 4.34
512 520 3.823873 ACGTAAGATTCCAATGGCAAACA 59.176 39.130 0.00 0.00 43.62 2.83
516 524 6.207810 AGTTTTTACGTAAGATTCCAATGGCA 59.792 34.615 8.23 0.00 43.62 4.92
533 541 4.841443 ATCCAAACCGACCAGTTTTTAC 57.159 40.909 0.00 0.00 37.87 2.01
557 565 5.990996 TCAAAATTGGCTTTGGAAACTGATC 59.009 36.000 0.00 0.00 37.00 2.92
587 596 1.224592 CCCTGTTTGGATCCCTCCG 59.775 63.158 9.90 0.00 45.37 4.63
633 775 0.390998 TCCATGTGAAGATTGCGCGA 60.391 50.000 12.10 0.00 0.00 5.87
636 778 1.399440 CCTGTCCATGTGAAGATTGCG 59.601 52.381 0.00 0.00 0.00 4.85
671 815 2.798283 TCGACGCGAATCTTTTGACTTT 59.202 40.909 15.93 0.00 31.06 2.66
680 824 2.331805 CCCGATCGACGCGAATCT 59.668 61.111 18.66 0.00 39.99 2.40
681 825 2.009755 GACCCGATCGACGCGAATC 61.010 63.158 18.66 11.81 39.99 2.52
682 826 2.025727 GACCCGATCGACGCGAAT 59.974 61.111 18.66 2.54 39.99 3.34
685 829 2.383027 TACATGACCCGATCGACGCG 62.383 60.000 18.66 3.53 41.07 6.01
686 830 0.039437 ATACATGACCCGATCGACGC 60.039 55.000 18.66 5.39 41.07 5.19
687 831 1.686464 CATACATGACCCGATCGACG 58.314 55.000 18.66 8.71 42.18 5.12
688 832 1.419374 GCATACATGACCCGATCGAC 58.581 55.000 18.66 8.26 0.00 4.20
689 833 0.317160 GGCATACATGACCCGATCGA 59.683 55.000 18.66 0.00 0.00 3.59
690 834 0.033366 TGGCATACATGACCCGATCG 59.967 55.000 8.51 8.51 33.92 3.69
691 835 1.873591 GTTGGCATACATGACCCGATC 59.126 52.381 0.00 0.00 33.92 3.69
692 836 1.810031 CGTTGGCATACATGACCCGAT 60.810 52.381 0.00 0.00 33.92 4.18
693 837 0.461163 CGTTGGCATACATGACCCGA 60.461 55.000 0.00 0.00 33.92 5.14
694 838 0.742990 ACGTTGGCATACATGACCCG 60.743 55.000 0.00 3.49 33.92 5.28
695 839 2.319136 TACGTTGGCATACATGACCC 57.681 50.000 0.00 0.00 33.92 4.46
747 1180 2.603560 GAGTTGCGCAGTATTCAGTACC 59.396 50.000 11.31 0.00 33.58 3.34
758 1191 0.870393 ACATGTTCTGAGTTGCGCAG 59.130 50.000 11.31 0.00 32.70 5.18
761 1194 4.457810 CAAGTAACATGTTCTGAGTTGCG 58.542 43.478 15.85 0.00 33.87 4.85
791 1225 9.941325 TGAGTTGCAAAATATTGGTAAATTGAT 57.059 25.926 0.00 0.00 37.02 2.57
792 1226 9.421806 CTGAGTTGCAAAATATTGGTAAATTGA 57.578 29.630 0.00 0.00 37.02 2.57
813 1247 3.300388 TGAGGTGTTCTGAGTTCTGAGT 58.700 45.455 0.00 0.00 0.00 3.41
816 1250 6.708054 AGTTAATTGAGGTGTTCTGAGTTCTG 59.292 38.462 0.00 0.00 0.00 3.02
817 1251 6.708054 CAGTTAATTGAGGTGTTCTGAGTTCT 59.292 38.462 0.00 0.00 0.00 3.01
818 1252 6.483640 ACAGTTAATTGAGGTGTTCTGAGTTC 59.516 38.462 4.81 0.00 0.00 3.01
820 1254 5.930135 ACAGTTAATTGAGGTGTTCTGAGT 58.070 37.500 4.81 0.00 0.00 3.41
821 1255 6.091441 GCTACAGTTAATTGAGGTGTTCTGAG 59.909 42.308 4.81 0.00 0.00 3.35
823 1257 5.934625 AGCTACAGTTAATTGAGGTGTTCTG 59.065 40.000 4.81 0.00 0.00 3.02
824 1258 6.115448 AGCTACAGTTAATTGAGGTGTTCT 57.885 37.500 4.81 0.00 0.00 3.01
825 1259 5.351740 GGAGCTACAGTTAATTGAGGTGTTC 59.648 44.000 4.81 0.35 0.00 3.18
826 1260 5.013183 AGGAGCTACAGTTAATTGAGGTGTT 59.987 40.000 4.81 0.00 0.00 3.32
829 1263 5.958987 ACTAGGAGCTACAGTTAATTGAGGT 59.041 40.000 4.81 3.82 0.00 3.85
837 1271 5.269991 ACCATTGACTAGGAGCTACAGTTA 58.730 41.667 0.00 0.00 0.00 2.24
838 1272 4.097418 ACCATTGACTAGGAGCTACAGTT 58.903 43.478 0.00 0.00 0.00 3.16
841 1275 2.688446 CGACCATTGACTAGGAGCTACA 59.312 50.000 0.00 0.00 0.00 2.74
849 1283 3.119316 AGCTCTTGTCGACCATTGACTAG 60.119 47.826 14.12 0.70 39.52 2.57
857 1291 1.181741 AGCAGAGCTCTTGTCGACCA 61.182 55.000 15.27 0.00 30.62 4.02
899 1342 9.920133 CCGTCTCACAAGTAGTACTACTATATA 57.080 37.037 30.89 17.89 44.96 0.86
900 1343 8.646004 TCCGTCTCACAAGTAGTACTACTATAT 58.354 37.037 30.89 18.48 44.96 0.86
901 1344 8.011844 TCCGTCTCACAAGTAGTACTACTATA 57.988 38.462 30.89 17.30 44.96 1.31
902 1345 6.882656 TCCGTCTCACAAGTAGTACTACTAT 58.117 40.000 30.89 20.98 44.96 2.12
903 1346 6.071108 ACTCCGTCTCACAAGTAGTACTACTA 60.071 42.308 30.89 17.15 44.96 1.82
905 1348 4.934602 ACTCCGTCTCACAAGTAGTACTAC 59.065 45.833 23.03 23.03 36.35 2.73
906 1349 5.157940 ACTCCGTCTCACAAGTAGTACTA 57.842 43.478 2.50 0.00 0.00 1.82
907 1350 4.018484 ACTCCGTCTCACAAGTAGTACT 57.982 45.455 0.00 0.00 0.00 2.73
908 1351 4.094146 GGTACTCCGTCTCACAAGTAGTAC 59.906 50.000 0.00 0.00 37.93 2.73
909 1352 4.256920 GGTACTCCGTCTCACAAGTAGTA 58.743 47.826 0.00 0.00 0.00 1.82
910 1353 3.080319 GGTACTCCGTCTCACAAGTAGT 58.920 50.000 0.00 0.00 0.00 2.73
911 1354 3.761311 GGTACTCCGTCTCACAAGTAG 57.239 52.381 0.00 0.00 0.00 2.57
924 1367 1.633561 GCGAGGTTAAACGGTACTCC 58.366 55.000 0.00 0.00 0.00 3.85
925 1368 1.067635 TGGCGAGGTTAAACGGTACTC 60.068 52.381 0.00 0.00 0.00 2.59
931 1374 3.673809 GCTCTATATGGCGAGGTTAAACG 59.326 47.826 0.00 0.00 0.00 3.60
946 1389 6.911250 TTAACGGGAGAATGATGCTCTATA 57.089 37.500 0.00 0.00 32.98 1.31
955 1399 4.263550 TGGGTTTGATTAACGGGAGAATGA 60.264 41.667 0.00 0.00 37.64 2.57
959 1403 3.791953 TTGGGTTTGATTAACGGGAGA 57.208 42.857 0.00 0.00 37.64 3.71
982 1426 1.915078 ATGGCCGGAGAAAGACAGGG 61.915 60.000 5.05 0.00 0.00 4.45
1009 1461 3.461773 CAGGATGAGGACGGCGGT 61.462 66.667 13.24 0.00 39.69 5.68
1014 1466 2.279120 GCGAGCAGGATGAGGACG 60.279 66.667 0.00 0.00 39.69 4.79
1045 1497 2.438434 GGTTGCGGTGGCTAGCAT 60.438 61.111 18.24 0.00 43.42 3.79
1165 1617 2.654404 GGCGACGAGATGGCGTAC 60.654 66.667 0.00 0.00 45.72 3.67
1170 1622 1.153369 AATGGTGGCGACGAGATGG 60.153 57.895 0.00 0.00 0.00 3.51
1179 1631 2.676121 TTGGCAGGAATGGTGGCG 60.676 61.111 0.00 0.00 43.28 5.69
1237 1689 1.841663 GCGAAGTTGCCGAAAGAGCA 61.842 55.000 0.00 0.00 38.81 4.26
1324 1776 4.527157 GATGCAAGCGCCGCAGTC 62.527 66.667 24.10 17.57 43.88 3.51
1381 1833 2.899505 GGCCTCAGCACTCCTCTC 59.100 66.667 0.00 0.00 42.56 3.20
1389 1841 3.555324 TCAACCACGGCCTCAGCA 61.555 61.111 0.00 0.00 42.56 4.41
1426 1878 2.731341 CGTAGTCGTGGAAGTAAGCCTG 60.731 54.545 0.00 0.00 0.00 4.85
1454 1906 1.282930 GACGTGAACGAACTGCTCCC 61.283 60.000 10.26 0.00 43.02 4.30
1472 1924 0.393808 GAATTTACTGCTGGGGCCGA 60.394 55.000 0.00 0.00 37.74 5.54
1480 1932 9.243105 GGAGAGATAGATAGAGAATTTACTGCT 57.757 37.037 0.00 0.00 0.00 4.24
1512 1964 1.089920 CATGGCCGGAGAAAGACAAG 58.910 55.000 5.05 0.00 0.00 3.16
1520 1972 4.193893 CCATGCCATGGCCGGAGA 62.194 66.667 33.44 15.55 44.70 3.71
1556 2008 0.935898 GTGCTTGCAGGATGAGATCG 59.064 55.000 0.00 0.00 39.69 3.69
1667 2652 2.433491 GCGTACGTGCCCATGTCA 60.433 61.111 17.90 0.00 0.00 3.58
1946 3039 2.099405 TGCTCCATGATGTCGTAGTCA 58.901 47.619 0.00 0.00 0.00 3.41
1995 3088 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1996 3089 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1997 3090 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1998 3091 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1999 3092 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2000 3093 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2001 3094 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2002 3095 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2003 3096 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2004 3097 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2005 3098 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2006 3099 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2007 3100 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2008 3101 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2009 3102 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2010 3103 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2011 3104 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2012 3105 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2013 3106 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2014 3107 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2015 3108 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2016 3109 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2017 3110 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2018 3111 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
2019 3112 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
2020 3113 4.646945 GTGAGAGAGAGAGAGAGAGAGAGA 59.353 50.000 0.00 0.00 0.00 3.10
2021 3114 4.403752 TGTGAGAGAGAGAGAGAGAGAGAG 59.596 50.000 0.00 0.00 0.00 3.20
2022 3115 4.160439 GTGTGAGAGAGAGAGAGAGAGAGA 59.840 50.000 0.00 0.00 0.00 3.10
2023 3116 4.081476 TGTGTGAGAGAGAGAGAGAGAGAG 60.081 50.000 0.00 0.00 0.00 3.20
2024 3117 3.837731 TGTGTGAGAGAGAGAGAGAGAGA 59.162 47.826 0.00 0.00 0.00 3.10
2081 3195 5.468746 GGTTGTGAAGTAGCAAGTGATGTAA 59.531 40.000 0.00 0.00 0.00 2.41
2084 3198 3.120546 CGGTTGTGAAGTAGCAAGTGATG 60.121 47.826 0.00 0.00 0.00 3.07
2085 3199 3.067106 CGGTTGTGAAGTAGCAAGTGAT 58.933 45.455 0.00 0.00 0.00 3.06
2087 3201 2.476619 CTCGGTTGTGAAGTAGCAAGTG 59.523 50.000 0.00 0.00 0.00 3.16
2089 3203 1.461127 GCTCGGTTGTGAAGTAGCAAG 59.539 52.381 0.00 0.00 0.00 4.01
2109 3251 0.246757 CTCGAAATTCGGTCGCAACG 60.247 55.000 15.76 0.00 40.88 4.10
2111 3253 2.350899 TACTCGAAATTCGGTCGCAA 57.649 45.000 15.76 0.00 40.88 4.85
2138 3280 3.117512 ACTGAATTTGGGACTGACAACCT 60.118 43.478 0.00 0.00 0.00 3.50
2162 3304 2.170166 TGCCAAAGATCATGGGTGTTC 58.830 47.619 16.64 3.41 38.44 3.18
2212 3354 9.103861 GGACGGAGGTAGTATTACTGTATATAC 57.896 40.741 5.89 5.89 0.00 1.47
2227 3375 3.573110 CCTATAAACCAGGACGGAGGTAG 59.427 52.174 0.00 0.00 37.07 3.18
2228 3376 3.052642 ACCTATAAACCAGGACGGAGGTA 60.053 47.826 0.00 0.00 35.66 3.08
2229 3377 2.292719 ACCTATAAACCAGGACGGAGGT 60.293 50.000 0.00 0.00 40.61 3.85
2230 3378 2.364647 GACCTATAAACCAGGACGGAGG 59.635 54.545 0.00 0.00 38.63 4.30
2231 3379 3.297736 AGACCTATAAACCAGGACGGAG 58.702 50.000 0.00 0.00 38.63 4.63
2233 3381 2.364647 GGAGACCTATAAACCAGGACGG 59.635 54.545 0.00 0.00 42.50 4.79
2234 3382 3.297736 AGGAGACCTATAAACCAGGACG 58.702 50.000 0.00 0.00 36.61 4.79
2235 3383 5.045797 ACAAAGGAGACCTATAAACCAGGAC 60.046 44.000 0.00 0.00 36.61 3.85
2236 3384 5.098663 ACAAAGGAGACCTATAAACCAGGA 58.901 41.667 0.00 0.00 36.61 3.86
2237 3385 5.437191 ACAAAGGAGACCTATAAACCAGG 57.563 43.478 0.00 0.00 39.25 4.45
2238 3386 7.184067 ACTACAAAGGAGACCTATAAACCAG 57.816 40.000 0.00 0.00 31.13 4.00
2239 3387 7.563724 AACTACAAAGGAGACCTATAAACCA 57.436 36.000 0.00 0.00 31.13 3.67
2240 3388 7.881751 ACAAACTACAAAGGAGACCTATAAACC 59.118 37.037 0.00 0.00 31.13 3.27
2241 3389 8.718734 CACAAACTACAAAGGAGACCTATAAAC 58.281 37.037 0.00 0.00 31.13 2.01
2242 3390 7.389607 GCACAAACTACAAAGGAGACCTATAAA 59.610 37.037 0.00 0.00 31.13 1.40
2243 3391 6.877322 GCACAAACTACAAAGGAGACCTATAA 59.123 38.462 0.00 0.00 31.13 0.98
2244 3392 6.403878 GCACAAACTACAAAGGAGACCTATA 58.596 40.000 0.00 0.00 31.13 1.31
2245 3393 5.246307 GCACAAACTACAAAGGAGACCTAT 58.754 41.667 0.00 0.00 31.13 2.57
2246 3394 4.504340 GGCACAAACTACAAAGGAGACCTA 60.504 45.833 0.00 0.00 31.13 3.08
2247 3395 3.477530 GCACAAACTACAAAGGAGACCT 58.522 45.455 0.00 0.00 33.87 3.85
2248 3396 2.552743 GGCACAAACTACAAAGGAGACC 59.447 50.000 0.00 0.00 0.00 3.85
2249 3397 3.211045 TGGCACAAACTACAAAGGAGAC 58.789 45.455 0.00 0.00 31.92 3.36
2250 3398 3.569194 TGGCACAAACTACAAAGGAGA 57.431 42.857 0.00 0.00 31.92 3.71
2264 3412 9.823647 TTAAATCTTTAGTCAAAATTTGGCACA 57.176 25.926 13.11 0.00 37.85 4.57
2289 3437 9.539825 TTGACATGCATTAACATTTTGTTAGTT 57.460 25.926 0.00 0.00 42.93 2.24
2290 3438 9.195411 CTTGACATGCATTAACATTTTGTTAGT 57.805 29.630 0.00 0.00 42.93 2.24
2291 3439 9.409312 TCTTGACATGCATTAACATTTTGTTAG 57.591 29.630 0.00 0.00 42.93 2.34
2292 3440 9.755804 TTCTTGACATGCATTAACATTTTGTTA 57.244 25.926 0.00 0.00 41.45 2.41
2293 3441 8.659925 TTCTTGACATGCATTAACATTTTGTT 57.340 26.923 0.00 0.00 43.88 2.83
2294 3442 8.659925 TTTCTTGACATGCATTAACATTTTGT 57.340 26.923 0.00 0.00 0.00 2.83
2295 3443 9.932699 TTTTTCTTGACATGCATTAACATTTTG 57.067 25.926 0.00 0.00 0.00 2.44
2307 3455 9.763465 CCAATGAAATAATTTTTCTTGACATGC 57.237 29.630 0.00 0.00 0.00 4.06
2354 3502 9.149225 GCATGTCACCAAACATTATATTTTTGA 57.851 29.630 0.00 0.00 37.78 2.69
2355 3503 8.109391 CGCATGTCACCAAACATTATATTTTTG 58.891 33.333 0.00 0.00 37.78 2.44
2356 3504 7.816995 ACGCATGTCACCAAACATTATATTTTT 59.183 29.630 0.00 0.00 37.78 1.94
2357 3505 7.275341 CACGCATGTCACCAAACATTATATTTT 59.725 33.333 0.00 0.00 37.78 1.82
2358 3506 6.751425 CACGCATGTCACCAAACATTATATTT 59.249 34.615 0.00 0.00 37.78 1.40
2359 3507 6.094742 TCACGCATGTCACCAAACATTATATT 59.905 34.615 0.00 0.00 37.78 1.28
2360 3508 5.588246 TCACGCATGTCACCAAACATTATAT 59.412 36.000 0.00 0.00 37.78 0.86
2361 3509 4.938226 TCACGCATGTCACCAAACATTATA 59.062 37.500 0.00 0.00 37.78 0.98
2362 3510 3.755905 TCACGCATGTCACCAAACATTAT 59.244 39.130 0.00 0.00 37.78 1.28
2363 3511 3.142174 TCACGCATGTCACCAAACATTA 58.858 40.909 0.00 0.00 37.78 1.90
2364 3512 1.952990 TCACGCATGTCACCAAACATT 59.047 42.857 0.00 0.00 37.78 2.71
2365 3513 1.603456 TCACGCATGTCACCAAACAT 58.397 45.000 0.00 0.00 40.49 2.71
2366 3514 1.064803 GTTCACGCATGTCACCAAACA 59.935 47.619 0.00 0.00 0.00 2.83
2367 3515 1.064803 TGTTCACGCATGTCACCAAAC 59.935 47.619 0.00 0.00 0.00 2.93
2368 3516 1.383523 TGTTCACGCATGTCACCAAA 58.616 45.000 0.00 0.00 0.00 3.28
2369 3517 1.603456 ATGTTCACGCATGTCACCAA 58.397 45.000 0.00 0.00 0.00 3.67
2370 3518 1.603456 AATGTTCACGCATGTCACCA 58.397 45.000 0.00 0.00 0.00 4.17
2371 3519 2.704725 AAATGTTCACGCATGTCACC 57.295 45.000 0.00 0.00 0.00 4.02
2372 3520 3.371168 ACAAAATGTTCACGCATGTCAC 58.629 40.909 0.00 0.00 0.00 3.67
2373 3521 3.706802 ACAAAATGTTCACGCATGTCA 57.293 38.095 0.00 0.00 0.00 3.58
2374 3522 5.212194 ACTAACAAAATGTTCACGCATGTC 58.788 37.500 0.00 0.00 40.22 3.06
2375 3523 5.181690 ACTAACAAAATGTTCACGCATGT 57.818 34.783 0.00 0.00 40.22 3.21
2376 3524 6.509317 AAACTAACAAAATGTTCACGCATG 57.491 33.333 0.00 0.00 40.22 4.06
2377 3525 8.810652 ATTAAACTAACAAAATGTTCACGCAT 57.189 26.923 0.00 0.00 40.22 4.73
2378 3526 8.132362 AGATTAAACTAACAAAATGTTCACGCA 58.868 29.630 0.00 0.00 40.22 5.24
2379 3527 8.502161 AGATTAAACTAACAAAATGTTCACGC 57.498 30.769 0.00 0.00 40.22 5.34
2405 3553 9.941325 TTGTATTTCATGCTAAATTTTGACCAT 57.059 25.926 3.69 0.00 31.63 3.55
2406 3554 9.941325 ATTGTATTTCATGCTAAATTTTGACCA 57.059 25.926 3.69 0.00 31.63 4.02
2409 3557 9.381033 CCCATTGTATTTCATGCTAAATTTTGA 57.619 29.630 3.69 0.00 31.63 2.69
2410 3558 8.614346 CCCCATTGTATTTCATGCTAAATTTTG 58.386 33.333 0.00 0.00 31.63 2.44
2411 3559 8.547173 TCCCCATTGTATTTCATGCTAAATTTT 58.453 29.630 0.00 0.00 31.63 1.82
2412 3560 7.986889 GTCCCCATTGTATTTCATGCTAAATTT 59.013 33.333 0.00 0.00 31.63 1.82
2413 3561 7.418942 GGTCCCCATTGTATTTCATGCTAAATT 60.419 37.037 0.00 0.00 31.63 1.82
2414 3562 6.041979 GGTCCCCATTGTATTTCATGCTAAAT 59.958 38.462 0.00 0.00 33.69 1.40
2415 3563 5.362430 GGTCCCCATTGTATTTCATGCTAAA 59.638 40.000 0.00 0.00 0.00 1.85
2416 3564 4.892934 GGTCCCCATTGTATTTCATGCTAA 59.107 41.667 0.00 0.00 0.00 3.09
2417 3565 4.079500 TGGTCCCCATTGTATTTCATGCTA 60.080 41.667 0.00 0.00 0.00 3.49
2418 3566 3.299503 GGTCCCCATTGTATTTCATGCT 58.700 45.455 0.00 0.00 0.00 3.79
2419 3567 3.030291 TGGTCCCCATTGTATTTCATGC 58.970 45.455 0.00 0.00 0.00 4.06
2420 3568 5.874897 ATTGGTCCCCATTGTATTTCATG 57.125 39.130 0.00 0.00 31.53 3.07
2421 3569 7.147567 GGTTTATTGGTCCCCATTGTATTTCAT 60.148 37.037 0.00 0.00 31.53 2.57
2422 3570 6.155393 GGTTTATTGGTCCCCATTGTATTTCA 59.845 38.462 0.00 0.00 31.53 2.69
2423 3571 6.407639 GGGTTTATTGGTCCCCATTGTATTTC 60.408 42.308 0.00 0.00 37.09 2.17
2424 3572 5.427157 GGGTTTATTGGTCCCCATTGTATTT 59.573 40.000 0.00 0.00 37.09 1.40
2425 3573 4.966168 GGGTTTATTGGTCCCCATTGTATT 59.034 41.667 0.00 0.00 37.09 1.89
2426 3574 4.552674 GGGTTTATTGGTCCCCATTGTAT 58.447 43.478 0.00 0.00 37.09 2.29
2427 3575 3.625211 CGGGTTTATTGGTCCCCATTGTA 60.625 47.826 0.00 0.00 38.09 2.41
2428 3576 2.827755 GGGTTTATTGGTCCCCATTGT 58.172 47.619 0.00 0.00 37.09 2.71
2429 3577 1.754226 CGGGTTTATTGGTCCCCATTG 59.246 52.381 0.00 0.00 38.09 2.82
2430 3578 1.342574 CCGGGTTTATTGGTCCCCATT 60.343 52.381 0.00 0.00 38.09 3.16
2431 3579 0.260523 CCGGGTTTATTGGTCCCCAT 59.739 55.000 0.00 0.00 38.09 4.00
2432 3580 0.845543 TCCGGGTTTATTGGTCCCCA 60.846 55.000 0.00 0.00 38.09 4.96
2433 3581 0.394762 GTCCGGGTTTATTGGTCCCC 60.395 60.000 0.00 0.00 38.09 4.81
2434 3582 0.745486 CGTCCGGGTTTATTGGTCCC 60.745 60.000 0.00 0.00 37.98 4.46
2435 3583 0.745486 CCGTCCGGGTTTATTGGTCC 60.745 60.000 0.00 0.00 0.00 4.46
2436 3584 0.249955 TCCGTCCGGGTTTATTGGTC 59.750 55.000 0.00 0.00 37.00 4.02
2437 3585 0.251073 CTCCGTCCGGGTTTATTGGT 59.749 55.000 0.00 0.00 37.00 3.67
2438 3586 0.463116 CCTCCGTCCGGGTTTATTGG 60.463 60.000 0.00 0.00 37.00 3.16
2439 3587 0.251073 ACCTCCGTCCGGGTTTATTG 59.749 55.000 0.00 0.00 37.00 1.90
2440 3588 1.758862 CTACCTCCGTCCGGGTTTATT 59.241 52.381 0.00 0.00 37.07 1.40
2441 3589 1.342374 ACTACCTCCGTCCGGGTTTAT 60.342 52.381 0.00 0.00 37.07 1.40
2442 3590 0.039618 ACTACCTCCGTCCGGGTTTA 59.960 55.000 0.00 0.00 37.07 2.01
2443 3591 0.039618 TACTACCTCCGTCCGGGTTT 59.960 55.000 0.00 0.00 37.07 3.27
2444 3592 0.394899 CTACTACCTCCGTCCGGGTT 60.395 60.000 0.00 0.00 37.07 4.11
2445 3593 1.225704 CTACTACCTCCGTCCGGGT 59.774 63.158 0.00 0.00 39.40 5.28
2446 3594 0.534652 CTCTACTACCTCCGTCCGGG 60.535 65.000 0.00 0.00 35.59 5.73
2447 3595 0.179936 ACTCTACTACCTCCGTCCGG 59.820 60.000 0.00 0.00 0.00 5.14
2448 3596 2.898729 TACTCTACTACCTCCGTCCG 57.101 55.000 0.00 0.00 0.00 4.79
2449 3597 6.295249 ACTTTATACTCTACTACCTCCGTCC 58.705 44.000 0.00 0.00 0.00 4.79
2450 3598 8.934825 CATACTTTATACTCTACTACCTCCGTC 58.065 40.741 0.00 0.00 0.00 4.79
2451 3599 8.435982 ACATACTTTATACTCTACTACCTCCGT 58.564 37.037 0.00 0.00 0.00 4.69
2452 3600 8.845413 ACATACTTTATACTCTACTACCTCCG 57.155 38.462 0.00 0.00 0.00 4.63
2619 3949 4.591072 AGTAGTGGAGGCAGGATCTTATTC 59.409 45.833 0.00 0.00 0.00 1.75
2673 4015 9.330063 GTTTTGTACTATCATGATTGGAGATGA 57.670 33.333 14.65 0.00 33.20 2.92
2701 4043 8.843262 GGACTGTTAAAAGTAGGTGTTATTTGT 58.157 33.333 0.00 0.00 0.00 2.83
2702 4044 8.294577 GGGACTGTTAAAAGTAGGTGTTATTTG 58.705 37.037 0.00 0.00 0.00 2.32
2703 4045 8.222637 AGGGACTGTTAAAAGTAGGTGTTATTT 58.777 33.333 0.00 0.00 37.18 1.40
2704 4046 7.752638 AGGGACTGTTAAAAGTAGGTGTTATT 58.247 34.615 0.00 0.00 37.18 1.40
2705 4047 7.325725 AGGGACTGTTAAAAGTAGGTGTTAT 57.674 36.000 0.00 0.00 37.18 1.89
2717 4059 3.215975 CGGGTGAAAAGGGACTGTTAAA 58.784 45.455 0.00 0.00 35.03 1.52
2747 4094 3.123621 GGTTTGTGTTCGCTACTGATCTG 59.876 47.826 0.00 0.00 0.00 2.90
2755 4102 8.024285 CCTTATAATTTTGGTTTGTGTTCGCTA 58.976 33.333 0.00 0.00 0.00 4.26
2756 4103 6.866248 CCTTATAATTTTGGTTTGTGTTCGCT 59.134 34.615 0.00 0.00 0.00 4.93
2796 4143 8.201464 TGAAACATGTGAACTTCTTAGTGTAGA 58.799 33.333 0.00 0.00 34.01 2.59
2929 5961 4.505313 GAACTTGGGTTCTCATTTGTCC 57.495 45.455 2.14 0.00 45.90 4.02
3028 6061 6.248433 AGATCACCTACACACATGGATTTTT 58.752 36.000 0.00 0.00 0.00 1.94
3029 6062 5.819991 AGATCACCTACACACATGGATTTT 58.180 37.500 0.00 0.00 0.00 1.82
3034 6067 3.935203 GTGAAGATCACCTACACACATGG 59.065 47.826 0.00 0.00 41.37 3.66
3038 6071 2.607187 CCGTGAAGATCACCTACACAC 58.393 52.381 5.00 0.00 44.20 3.82
3040 6073 1.822990 TCCCGTGAAGATCACCTACAC 59.177 52.381 5.00 0.00 44.20 2.90
3052 6085 0.179067 GTCCACTGTGTTCCCGTGAA 60.179 55.000 7.08 0.00 0.00 3.18
3055 6088 2.040009 CTGGTCCACTGTGTTCCCGT 62.040 60.000 7.08 0.00 0.00 5.28
3056 6089 1.301716 CTGGTCCACTGTGTTCCCG 60.302 63.158 7.08 1.88 0.00 5.14
3057 6090 1.073199 CCTGGTCCACTGTGTTCCC 59.927 63.158 7.08 4.09 0.00 3.97
3078 6111 2.615262 TTTTCCGCAACAACGCCCAC 62.615 55.000 0.00 0.00 0.00 4.61
3092 6125 3.986277 TGTACTGTTCTCCTCGTTTTCC 58.014 45.455 0.00 0.00 0.00 3.13
3098 6131 4.177026 CCATTCTTGTACTGTTCTCCTCG 58.823 47.826 0.00 0.00 0.00 4.63
3109 6142 2.435372 TGCCCATCCCATTCTTGTAC 57.565 50.000 0.00 0.00 0.00 2.90
3110 6143 2.244510 ACATGCCCATCCCATTCTTGTA 59.755 45.455 0.00 0.00 0.00 2.41
3111 6144 1.007479 ACATGCCCATCCCATTCTTGT 59.993 47.619 0.00 0.00 0.00 3.16
3112 6145 1.684983 GACATGCCCATCCCATTCTTG 59.315 52.381 0.00 0.00 0.00 3.02
3113 6146 1.288633 TGACATGCCCATCCCATTCTT 59.711 47.619 0.00 0.00 0.00 2.52
3118 6151 2.351394 AGATATGACATGCCCATCCCA 58.649 47.619 0.00 0.00 0.00 4.37
3120 6153 3.087031 CCAAGATATGACATGCCCATCC 58.913 50.000 0.00 0.46 0.00 3.51
3125 6158 4.077300 TGTCTCCAAGATATGACATGCC 57.923 45.455 0.00 0.00 34.94 4.40
3131 6164 5.852282 TGATCGTTGTCTCCAAGATATGA 57.148 39.130 0.00 0.00 0.00 2.15
3133 6166 5.305386 TCCATGATCGTTGTCTCCAAGATAT 59.695 40.000 0.00 0.00 0.00 1.63
3176 6209 8.604890 GCACAAATTCTTCTATTAGACACCTAC 58.395 37.037 0.00 0.00 0.00 3.18
3178 6211 7.398024 AGCACAAATTCTTCTATTAGACACCT 58.602 34.615 0.00 0.00 0.00 4.00
3211 6244 4.157105 CACATTGTTCATGAGCATGGAGAA 59.843 41.667 13.38 7.15 39.24 2.87
3213 6246 3.442625 ACACATTGTTCATGAGCATGGAG 59.557 43.478 13.38 9.38 39.24 3.86
3276 6309 9.088512 CCGATTATTACATATAGTTTCAGCCTC 57.911 37.037 0.00 0.00 0.00 4.70
3286 6319 9.035607 GCTCAACCATCCGATTATTACATATAG 57.964 37.037 0.00 0.00 0.00 1.31
3287 6320 8.536175 TGCTCAACCATCCGATTATTACATATA 58.464 33.333 0.00 0.00 0.00 0.86
3288 6321 7.394016 TGCTCAACCATCCGATTATTACATAT 58.606 34.615 0.00 0.00 0.00 1.78
3299 6332 4.890158 ATACATATGCTCAACCATCCGA 57.110 40.909 1.58 0.00 0.00 4.55
3304 6337 7.235399 TCTCTCCATAATACATATGCTCAACCA 59.765 37.037 1.58 0.00 40.15 3.67
3329 6362 6.073819 GGCACTTTTAACAAATGTGAATGGTC 60.074 38.462 17.09 3.49 44.66 4.02
3331 6364 5.179182 GGGCACTTTTAACAAATGTGAATGG 59.821 40.000 17.09 0.00 44.66 3.16
3337 6370 5.465935 CGTATGGGCACTTTTAACAAATGT 58.534 37.500 0.00 0.00 0.00 2.71
3434 6467 3.215151 TCAACGCAGGTCATTGGTAAAA 58.785 40.909 0.00 0.00 0.00 1.52
3436 6469 2.552599 TCAACGCAGGTCATTGGTAA 57.447 45.000 0.00 0.00 0.00 2.85
3441 6477 1.078709 CGTGATCAACGCAGGTCATT 58.921 50.000 0.00 0.00 46.99 2.57
3491 6527 4.540735 CGGGTAAGGGCGGCGATT 62.541 66.667 12.98 4.16 0.00 3.34
3598 6635 1.441729 GGAGAATGGTCGGCGATCA 59.558 57.895 26.60 26.60 0.00 2.92
3730 6767 2.107041 TTGATCACGGAGTTGCGGGT 62.107 55.000 0.00 0.00 41.61 5.28
4046 7090 6.816136 TCATCACCATTAGTACGATCAACAT 58.184 36.000 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.