Multiple sequence alignment - TraesCS3B01G449400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G449400 chr3B 100.000 2037 0 0 1 2037 689987807 689985771 0.000000e+00 3762.0
1 TraesCS3B01G449400 chr3B 85.255 373 53 2 1255 1626 131567592 131567963 1.370000e-102 383.0
2 TraesCS3B01G449400 chr3B 100.000 187 0 0 2263 2449 689985545 689985359 1.800000e-91 346.0
3 TraesCS3B01G449400 chr3B 93.333 150 9 1 2300 2449 690112959 690112811 1.140000e-53 220.0
4 TraesCS3B01G449400 chr3B 89.873 79 5 1 2335 2410 690104532 690104454 5.570000e-17 99.0
5 TraesCS3B01G449400 chr2A 99.362 2038 11 2 1 2037 682560615 682558579 0.000000e+00 3690.0
6 TraesCS3B01G449400 chr2A 98.331 2037 33 1 1 2037 509973528 509971493 0.000000e+00 3572.0
7 TraesCS3B01G449400 chr2A 100.000 43 0 0 2263 2305 509971471 509971429 2.020000e-11 80.5
8 TraesCS3B01G449400 chr1B 98.871 2037 23 0 1 2037 222287286 222285250 0.000000e+00 3635.0
9 TraesCS3B01G449400 chr1B 100.000 43 0 0 2263 2305 222285224 222285182 2.020000e-11 80.5
10 TraesCS3B01G449400 chr7B 98.184 2037 37 0 1 2037 204459304 204461340 0.000000e+00 3557.0
11 TraesCS3B01G449400 chr7B 99.333 1499 10 0 1 1499 13054141 13052643 0.000000e+00 2713.0
12 TraesCS3B01G449400 chr7B 97.787 497 10 1 1479 1974 13052579 13052083 0.000000e+00 856.0
13 TraesCS3B01G449400 chr7B 100.000 41 0 0 2263 2303 204461408 204461448 2.610000e-10 76.8
14 TraesCS3B01G449400 chr3A 99.600 1501 4 1 1 1499 210126907 210125407 0.000000e+00 2737.0
15 TraesCS3B01G449400 chr3A 98.036 560 10 1 1479 2037 210125343 210124784 0.000000e+00 972.0
16 TraesCS3B01G449400 chr3A 95.395 152 6 1 2299 2449 658094483 658094332 8.750000e-60 241.0
17 TraesCS3B01G449400 chr1A 79.768 1206 180 50 865 2037 537147174 537146000 0.000000e+00 817.0
18 TraesCS3B01G449400 chr1D 79.797 1183 177 49 865 2023 440875019 440876163 0.000000e+00 804.0
19 TraesCS3B01G449400 chr4D 83.747 726 95 14 841 1557 278289227 278289938 0.000000e+00 665.0
20 TraesCS3B01G449400 chr4D 95.556 45 2 0 2263 2307 365038466 365038422 3.380000e-09 73.1
21 TraesCS3B01G449400 chr3D 90.667 150 13 1 2300 2449 523316864 523316716 5.340000e-47 198.0
22 TraesCS3B01G449400 chr5A 94.231 104 5 1 379 481 460411016 460410913 9.070000e-35 158.0
23 TraesCS3B01G449400 chr4A 94.231 104 5 1 379 481 146663888 146663785 9.070000e-35 158.0
24 TraesCS3B01G449400 chr6A 92.523 107 7 1 380 485 601004505 601004611 4.220000e-33 152.0
25 TraesCS3B01G449400 chr6B 97.727 44 1 0 2263 2306 460917413 460917370 2.610000e-10 76.8
26 TraesCS3B01G449400 chr6B 93.878 49 2 1 2263 2311 9208740 9208693 3.380000e-09 73.1
27 TraesCS3B01G449400 chrUn 97.674 43 1 0 2267 2309 90100608 90100566 9.390000e-10 75.0
28 TraesCS3B01G449400 chr7A 92.157 51 2 2 2267 2317 11236322 11236274 1.210000e-08 71.3
29 TraesCS3B01G449400 chr5D 89.286 56 4 2 2263 2317 466597858 466597804 4.370000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G449400 chr3B 689985359 689987807 2448 True 2054.00 3762 100.0000 1 2449 2 chr3B.!!$R3 2448
1 TraesCS3B01G449400 chr2A 682558579 682560615 2036 True 3690.00 3690 99.3620 1 2037 1 chr2A.!!$R1 2036
2 TraesCS3B01G449400 chr2A 509971429 509973528 2099 True 1826.25 3572 99.1655 1 2305 2 chr2A.!!$R2 2304
3 TraesCS3B01G449400 chr1B 222285182 222287286 2104 True 1857.75 3635 99.4355 1 2305 2 chr1B.!!$R1 2304
4 TraesCS3B01G449400 chr7B 204459304 204461448 2144 False 1816.90 3557 99.0920 1 2303 2 chr7B.!!$F1 2302
5 TraesCS3B01G449400 chr7B 13052083 13054141 2058 True 1784.50 2713 98.5600 1 1974 2 chr7B.!!$R1 1973
6 TraesCS3B01G449400 chr3A 210124784 210126907 2123 True 1854.50 2737 98.8180 1 2037 2 chr3A.!!$R2 2036
7 TraesCS3B01G449400 chr1A 537146000 537147174 1174 True 817.00 817 79.7680 865 2037 1 chr1A.!!$R1 1172
8 TraesCS3B01G449400 chr1D 440875019 440876163 1144 False 804.00 804 79.7970 865 2023 1 chr1D.!!$F1 1158
9 TraesCS3B01G449400 chr4D 278289227 278289938 711 False 665.00 665 83.7470 841 1557 1 chr4D.!!$F1 716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
346 347 0.324923 TACTAGGTGACACCCCGCAT 60.325 55.0 21.32 4.74 39.75 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2345 2564 1.152546 GGTGCCCCAACCAGAACTT 60.153 57.895 0.0 0.0 40.22 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
306 307 9.491675 TGTAACTTCGGAAATTAAGTATGTTGA 57.508 29.630 0.00 0.00 34.91 3.18
346 347 0.324923 TACTAGGTGACACCCCGCAT 60.325 55.000 21.32 4.74 39.75 4.73
985 989 1.403972 GCACGAAGAACGCTACCGAG 61.404 60.000 0.00 0.00 46.94 4.63
2305 2524 5.409520 CACGGGCGTTCTACTAGTATATGTA 59.590 44.000 2.33 0.00 0.00 2.29
2306 2525 5.997746 ACGGGCGTTCTACTAGTATATGTAA 59.002 40.000 2.33 0.00 0.00 2.41
2307 2526 6.486657 ACGGGCGTTCTACTAGTATATGTAAA 59.513 38.462 2.33 0.00 0.00 2.01
2308 2527 7.020010 CGGGCGTTCTACTAGTATATGTAAAG 58.980 42.308 2.33 0.00 0.00 1.85
2309 2528 7.311408 GGGCGTTCTACTAGTATATGTAAAGG 58.689 42.308 2.33 0.00 0.00 3.11
2310 2529 7.040132 GGGCGTTCTACTAGTATATGTAAAGGT 60.040 40.741 2.33 0.00 0.00 3.50
2311 2530 8.020244 GGCGTTCTACTAGTATATGTAAAGGTC 58.980 40.741 2.33 0.00 0.00 3.85
2312 2531 7.743838 GCGTTCTACTAGTATATGTAAAGGTCG 59.256 40.741 2.33 1.77 0.00 4.79
2313 2532 8.982685 CGTTCTACTAGTATATGTAAAGGTCGA 58.017 37.037 2.33 0.00 0.00 4.20
2316 2535 9.486497 TCTACTAGTATATGTAAAGGTCGACTG 57.514 37.037 16.46 0.00 0.00 3.51
2317 2536 7.507733 ACTAGTATATGTAAAGGTCGACTGG 57.492 40.000 16.46 0.00 0.00 4.00
2318 2537 5.197682 AGTATATGTAAAGGTCGACTGGC 57.802 43.478 16.46 0.00 0.00 4.85
2319 2538 4.894114 AGTATATGTAAAGGTCGACTGGCT 59.106 41.667 16.46 0.67 0.00 4.75
2320 2539 6.066690 AGTATATGTAAAGGTCGACTGGCTA 58.933 40.000 16.46 0.00 0.00 3.93
2321 2540 5.864418 ATATGTAAAGGTCGACTGGCTAA 57.136 39.130 16.46 0.00 0.00 3.09
2322 2541 4.755266 ATGTAAAGGTCGACTGGCTAAT 57.245 40.909 16.46 0.68 0.00 1.73
2323 2542 5.864418 ATGTAAAGGTCGACTGGCTAATA 57.136 39.130 16.46 0.00 0.00 0.98
2324 2543 5.864418 TGTAAAGGTCGACTGGCTAATAT 57.136 39.130 16.46 0.00 0.00 1.28
2325 2544 6.229936 TGTAAAGGTCGACTGGCTAATATT 57.770 37.500 16.46 0.00 0.00 1.28
2326 2545 7.350744 TGTAAAGGTCGACTGGCTAATATTA 57.649 36.000 16.46 0.00 0.00 0.98
2327 2546 7.784037 TGTAAAGGTCGACTGGCTAATATTAA 58.216 34.615 16.46 0.00 0.00 1.40
2328 2547 7.707893 TGTAAAGGTCGACTGGCTAATATTAAC 59.292 37.037 16.46 0.00 0.00 2.01
2329 2548 5.211174 AGGTCGACTGGCTAATATTAACC 57.789 43.478 16.46 7.82 0.00 2.85
2330 2549 4.040095 AGGTCGACTGGCTAATATTAACCC 59.960 45.833 16.46 8.24 0.00 4.11
2331 2550 4.202284 GGTCGACTGGCTAATATTAACCCA 60.202 45.833 16.46 11.72 0.00 4.51
2332 2551 5.512576 GGTCGACTGGCTAATATTAACCCAT 60.513 44.000 16.46 1.04 0.00 4.00
2333 2552 5.408604 GTCGACTGGCTAATATTAACCCATG 59.591 44.000 8.70 9.56 0.00 3.66
2334 2553 5.305902 TCGACTGGCTAATATTAACCCATGA 59.694 40.000 11.56 8.85 0.00 3.07
2335 2554 5.995282 CGACTGGCTAATATTAACCCATGAA 59.005 40.000 11.56 0.00 0.00 2.57
2336 2555 6.655003 CGACTGGCTAATATTAACCCATGAAT 59.345 38.462 11.56 0.00 0.00 2.57
2337 2556 7.361201 CGACTGGCTAATATTAACCCATGAATG 60.361 40.741 11.56 5.07 0.00 2.67
2338 2557 7.526041 ACTGGCTAATATTAACCCATGAATGA 58.474 34.615 11.56 0.00 0.00 2.57
2339 2558 7.667219 ACTGGCTAATATTAACCCATGAATGAG 59.333 37.037 11.56 3.61 0.00 2.90
2340 2559 7.754624 TGGCTAATATTAACCCATGAATGAGA 58.245 34.615 11.56 0.00 0.00 3.27
2341 2560 8.224025 TGGCTAATATTAACCCATGAATGAGAA 58.776 33.333 11.56 0.00 0.00 2.87
2342 2561 8.515414 GGCTAATATTAACCCATGAATGAGAAC 58.485 37.037 3.83 0.00 0.00 3.01
2343 2562 8.515414 GCTAATATTAACCCATGAATGAGAACC 58.485 37.037 0.00 0.00 0.00 3.62
2344 2563 7.839680 AATATTAACCCATGAATGAGAACCC 57.160 36.000 0.00 0.00 0.00 4.11
2345 2564 4.666412 TTAACCCATGAATGAGAACCCA 57.334 40.909 0.00 0.00 0.00 4.51
2346 2565 3.541242 AACCCATGAATGAGAACCCAA 57.459 42.857 0.00 0.00 0.00 4.12
2347 2566 3.091633 ACCCATGAATGAGAACCCAAG 57.908 47.619 0.00 0.00 0.00 3.61
2348 2567 2.379907 ACCCATGAATGAGAACCCAAGT 59.620 45.455 0.00 0.00 0.00 3.16
2349 2568 3.181418 ACCCATGAATGAGAACCCAAGTT 60.181 43.478 0.00 0.00 39.54 2.66
2360 2579 3.777556 CCAAGTTCTGGTTGGGGC 58.222 61.111 0.00 0.00 40.83 5.80
2361 2580 1.152567 CCAAGTTCTGGTTGGGGCA 60.153 57.895 0.00 0.00 40.83 5.36
2362 2581 1.463553 CCAAGTTCTGGTTGGGGCAC 61.464 60.000 0.00 0.00 40.83 5.01
2379 2598 3.214696 GCACCTGCCTTATATTGGACT 57.785 47.619 0.00 0.00 34.31 3.85
2380 2599 4.351874 GCACCTGCCTTATATTGGACTA 57.648 45.455 0.00 0.00 34.31 2.59
2381 2600 4.911390 GCACCTGCCTTATATTGGACTAT 58.089 43.478 0.00 0.00 34.31 2.12
2382 2601 5.316987 GCACCTGCCTTATATTGGACTATT 58.683 41.667 0.00 0.00 34.31 1.73
2383 2602 5.770162 GCACCTGCCTTATATTGGACTATTT 59.230 40.000 0.00 0.00 34.31 1.40
2384 2603 6.294176 GCACCTGCCTTATATTGGACTATTTG 60.294 42.308 0.00 0.00 34.31 2.32
2385 2604 6.207417 CACCTGCCTTATATTGGACTATTTGG 59.793 42.308 0.00 0.00 0.00 3.28
2386 2605 5.183904 CCTGCCTTATATTGGACTATTTGGC 59.816 44.000 0.00 0.00 37.38 4.52
2387 2606 5.952387 TGCCTTATATTGGACTATTTGGCT 58.048 37.500 0.00 0.00 37.69 4.75
2388 2607 7.085476 TGCCTTATATTGGACTATTTGGCTA 57.915 36.000 0.00 0.00 37.69 3.93
2389 2608 7.522542 TGCCTTATATTGGACTATTTGGCTAA 58.477 34.615 0.00 0.00 37.69 3.09
2390 2609 7.447238 TGCCTTATATTGGACTATTTGGCTAAC 59.553 37.037 0.00 0.00 37.69 2.34
2391 2610 7.665974 GCCTTATATTGGACTATTTGGCTAACT 59.334 37.037 0.00 0.00 34.42 2.24
2392 2611 9.574516 CCTTATATTGGACTATTTGGCTAACTT 57.425 33.333 0.00 0.00 0.00 2.66
2396 2615 7.775053 ATTGGACTATTTGGCTAACTTGAAA 57.225 32.000 0.00 0.00 0.00 2.69
2397 2616 7.775053 TTGGACTATTTGGCTAACTTGAAAT 57.225 32.000 0.00 0.00 0.00 2.17
2398 2617 7.156876 TGGACTATTTGGCTAACTTGAAATG 57.843 36.000 0.00 0.00 0.00 2.32
2399 2618 6.152661 TGGACTATTTGGCTAACTTGAAATGG 59.847 38.462 0.00 0.00 0.00 3.16
2400 2619 6.152831 GGACTATTTGGCTAACTTGAAATGGT 59.847 38.462 0.00 0.00 33.67 3.55
2401 2620 7.338449 GGACTATTTGGCTAACTTGAAATGGTA 59.662 37.037 0.00 0.00 31.85 3.25
2402 2621 8.823220 ACTATTTGGCTAACTTGAAATGGTAT 57.177 30.769 0.00 0.00 30.45 2.73
2403 2622 9.255029 ACTATTTGGCTAACTTGAAATGGTATT 57.745 29.630 0.00 0.00 30.45 1.89
2404 2623 9.520204 CTATTTGGCTAACTTGAAATGGTATTG 57.480 33.333 0.00 0.00 0.00 1.90
2405 2624 6.909550 TTGGCTAACTTGAAATGGTATTGT 57.090 33.333 0.00 0.00 0.00 2.71
2406 2625 6.909550 TGGCTAACTTGAAATGGTATTGTT 57.090 33.333 0.00 0.00 0.00 2.83
2407 2626 7.296628 TGGCTAACTTGAAATGGTATTGTTT 57.703 32.000 0.00 0.00 0.00 2.83
2408 2627 7.731054 TGGCTAACTTGAAATGGTATTGTTTT 58.269 30.769 0.00 0.00 0.00 2.43
2409 2628 8.207545 TGGCTAACTTGAAATGGTATTGTTTTT 58.792 29.630 0.00 0.00 0.00 1.94
2410 2629 9.699703 GGCTAACTTGAAATGGTATTGTTTTTA 57.300 29.630 0.00 0.00 0.00 1.52
2414 2633 9.830975 AACTTGAAATGGTATTGTTTTTAAGCT 57.169 25.926 0.00 0.00 32.34 3.74
2415 2634 9.260002 ACTTGAAATGGTATTGTTTTTAAGCTG 57.740 29.630 0.00 0.00 32.34 4.24
2416 2635 9.474920 CTTGAAATGGTATTGTTTTTAAGCTGA 57.525 29.630 0.00 0.00 0.00 4.26
2417 2636 8.810652 TGAAATGGTATTGTTTTTAAGCTGAC 57.189 30.769 0.00 0.00 0.00 3.51
2418 2637 8.417106 TGAAATGGTATTGTTTTTAAGCTGACA 58.583 29.630 0.00 0.00 0.00 3.58
2419 2638 9.255304 GAAATGGTATTGTTTTTAAGCTGACAA 57.745 29.630 0.00 0.00 36.55 3.18
2420 2639 9.606631 AAATGGTATTGTTTTTAAGCTGACAAA 57.393 25.926 0.00 0.00 35.83 2.83
2421 2640 9.777297 AATGGTATTGTTTTTAAGCTGACAAAT 57.223 25.926 0.00 0.00 35.83 2.32
2422 2641 9.777297 ATGGTATTGTTTTTAAGCTGACAAATT 57.223 25.926 0.00 0.00 35.83 1.82
2423 2642 9.255304 TGGTATTGTTTTTAAGCTGACAAATTC 57.745 29.630 0.00 0.00 35.83 2.17
2424 2643 9.255304 GGTATTGTTTTTAAGCTGACAAATTCA 57.745 29.630 0.00 0.00 35.83 2.57
2436 2655 8.613060 AGCTGACAAATTCATATATGTAGGTG 57.387 34.615 12.42 9.37 32.17 4.00
2437 2656 8.432013 AGCTGACAAATTCATATATGTAGGTGA 58.568 33.333 12.42 0.18 32.17 4.02
2438 2657 9.224267 GCTGACAAATTCATATATGTAGGTGAT 57.776 33.333 12.42 0.00 32.17 3.06
2440 2659 9.725019 TGACAAATTCATATATGTAGGTGATCC 57.275 33.333 12.42 4.40 0.00 3.36
2442 2661 9.950496 ACAAATTCATATATGTAGGTGATCCTC 57.050 33.333 12.42 0.00 43.94 3.71
2443 2662 9.091784 CAAATTCATATATGTAGGTGATCCTCG 57.908 37.037 12.42 0.00 43.94 4.63
2444 2663 6.775594 TTCATATATGTAGGTGATCCTCGG 57.224 41.667 12.42 0.00 43.94 4.63
2445 2664 5.827756 TCATATATGTAGGTGATCCTCGGT 58.172 41.667 12.42 0.00 43.94 4.69
2446 2665 5.652452 TCATATATGTAGGTGATCCTCGGTG 59.348 44.000 12.42 0.00 43.94 4.94
2447 2666 1.414158 ATGTAGGTGATCCTCGGTGG 58.586 55.000 0.00 0.00 43.94 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
346 347 8.628630 TCCAAAGTTACATACAATCATCAACA 57.371 30.769 0.00 0.00 0.00 3.33
985 989 3.633235 ACGACATCTATGCTCATCGAAC 58.367 45.455 7.44 0.00 33.88 3.95
1531 1713 8.367156 GCCCATTAAGAAATGAAATATGCCTAA 58.633 33.333 0.00 0.00 44.50 2.69
2305 2524 6.053650 GGTTAATATTAGCCAGTCGACCTTT 58.946 40.000 20.16 0.00 34.54 3.11
2306 2525 5.454329 GGGTTAATATTAGCCAGTCGACCTT 60.454 44.000 24.62 0.00 35.92 3.50
2307 2526 4.040095 GGGTTAATATTAGCCAGTCGACCT 59.960 45.833 24.62 4.91 35.92 3.85
2308 2527 4.202284 TGGGTTAATATTAGCCAGTCGACC 60.202 45.833 24.62 13.33 38.19 4.79
2309 2528 4.952460 TGGGTTAATATTAGCCAGTCGAC 58.048 43.478 24.62 7.70 38.19 4.20
2310 2529 5.305902 TCATGGGTTAATATTAGCCAGTCGA 59.694 40.000 24.62 14.47 45.45 4.20
2311 2530 5.547465 TCATGGGTTAATATTAGCCAGTCG 58.453 41.667 24.62 12.83 45.45 4.18
2312 2531 7.665559 TCATTCATGGGTTAATATTAGCCAGTC 59.334 37.037 24.62 11.75 45.45 3.51
2313 2532 7.526041 TCATTCATGGGTTAATATTAGCCAGT 58.474 34.615 24.62 12.79 45.45 4.00
2314 2533 7.884877 TCTCATTCATGGGTTAATATTAGCCAG 59.115 37.037 24.62 15.75 45.45 4.85
2315 2534 7.754624 TCTCATTCATGGGTTAATATTAGCCA 58.245 34.615 24.62 19.06 46.21 4.75
2316 2535 8.515414 GTTCTCATTCATGGGTTAATATTAGCC 58.485 37.037 17.63 17.63 33.73 3.93
2317 2536 8.515414 GGTTCTCATTCATGGGTTAATATTAGC 58.485 37.037 0.91 0.91 0.00 3.09
2318 2537 9.014297 GGGTTCTCATTCATGGGTTAATATTAG 57.986 37.037 0.00 0.00 0.00 1.73
2319 2538 8.506921 TGGGTTCTCATTCATGGGTTAATATTA 58.493 33.333 0.00 0.00 0.00 0.98
2320 2539 7.361438 TGGGTTCTCATTCATGGGTTAATATT 58.639 34.615 0.00 0.00 0.00 1.28
2321 2540 6.921412 TGGGTTCTCATTCATGGGTTAATAT 58.079 36.000 0.00 0.00 0.00 1.28
2322 2541 6.334378 TGGGTTCTCATTCATGGGTTAATA 57.666 37.500 0.00 0.00 0.00 0.98
2323 2542 5.205517 TGGGTTCTCATTCATGGGTTAAT 57.794 39.130 0.00 0.00 0.00 1.40
2324 2543 4.666412 TGGGTTCTCATTCATGGGTTAA 57.334 40.909 0.00 0.00 0.00 2.01
2325 2544 4.044065 ACTTGGGTTCTCATTCATGGGTTA 59.956 41.667 0.00 0.00 0.00 2.85
2326 2545 3.181418 ACTTGGGTTCTCATTCATGGGTT 60.181 43.478 0.00 0.00 0.00 4.11
2327 2546 2.379907 ACTTGGGTTCTCATTCATGGGT 59.620 45.455 0.00 0.00 0.00 4.51
2328 2547 3.091633 ACTTGGGTTCTCATTCATGGG 57.908 47.619 0.00 0.00 0.00 4.00
2329 2548 4.708726 GAACTTGGGTTCTCATTCATGG 57.291 45.455 0.00 0.00 45.90 3.66
2344 2563 1.463553 GGTGCCCCAACCAGAACTTG 61.464 60.000 0.00 0.00 40.22 3.16
2345 2564 1.152546 GGTGCCCCAACCAGAACTT 60.153 57.895 0.00 0.00 40.22 2.66
2346 2565 2.084930 AGGTGCCCCAACCAGAACT 61.085 57.895 0.00 0.00 43.20 3.01
2347 2566 1.903404 CAGGTGCCCCAACCAGAAC 60.903 63.158 0.00 0.00 43.20 3.01
2348 2567 2.520458 CAGGTGCCCCAACCAGAA 59.480 61.111 0.00 0.00 43.20 3.02
2349 2568 4.284550 GCAGGTGCCCCAACCAGA 62.285 66.667 0.00 0.00 43.20 3.86
2359 2578 3.214696 AGTCCAATATAAGGCAGGTGC 57.785 47.619 0.00 0.00 41.14 5.01
2360 2579 6.207417 CCAAATAGTCCAATATAAGGCAGGTG 59.793 42.308 0.00 0.00 0.00 4.00
2361 2580 6.306987 CCAAATAGTCCAATATAAGGCAGGT 58.693 40.000 0.00 0.00 0.00 4.00
2362 2581 5.183904 GCCAAATAGTCCAATATAAGGCAGG 59.816 44.000 0.00 0.00 36.21 4.85
2363 2582 6.006449 AGCCAAATAGTCCAATATAAGGCAG 58.994 40.000 0.00 0.00 37.53 4.85
2364 2583 5.952387 AGCCAAATAGTCCAATATAAGGCA 58.048 37.500 0.00 0.00 37.53 4.75
2365 2584 7.665974 AGTTAGCCAAATAGTCCAATATAAGGC 59.334 37.037 0.00 0.00 36.33 4.35
2366 2585 9.574516 AAGTTAGCCAAATAGTCCAATATAAGG 57.425 33.333 0.00 0.00 0.00 2.69
2370 2589 9.474313 TTTCAAGTTAGCCAAATAGTCCAATAT 57.526 29.630 0.00 0.00 0.00 1.28
2371 2590 8.871629 TTTCAAGTTAGCCAAATAGTCCAATA 57.128 30.769 0.00 0.00 0.00 1.90
2372 2591 7.775053 TTTCAAGTTAGCCAAATAGTCCAAT 57.225 32.000 0.00 0.00 0.00 3.16
2373 2592 7.309744 CCATTTCAAGTTAGCCAAATAGTCCAA 60.310 37.037 0.00 0.00 0.00 3.53
2374 2593 6.152661 CCATTTCAAGTTAGCCAAATAGTCCA 59.847 38.462 0.00 0.00 0.00 4.02
2375 2594 6.152831 ACCATTTCAAGTTAGCCAAATAGTCC 59.847 38.462 0.00 0.00 0.00 3.85
2376 2595 7.158099 ACCATTTCAAGTTAGCCAAATAGTC 57.842 36.000 0.00 0.00 0.00 2.59
2377 2596 8.823220 ATACCATTTCAAGTTAGCCAAATAGT 57.177 30.769 0.00 0.00 0.00 2.12
2378 2597 9.520204 CAATACCATTTCAAGTTAGCCAAATAG 57.480 33.333 0.00 0.00 0.00 1.73
2379 2598 9.030452 ACAATACCATTTCAAGTTAGCCAAATA 57.970 29.630 0.00 0.00 0.00 1.40
2380 2599 7.906327 ACAATACCATTTCAAGTTAGCCAAAT 58.094 30.769 0.00 0.00 0.00 2.32
2381 2600 7.296628 ACAATACCATTTCAAGTTAGCCAAA 57.703 32.000 0.00 0.00 0.00 3.28
2382 2601 6.909550 ACAATACCATTTCAAGTTAGCCAA 57.090 33.333 0.00 0.00 0.00 4.52
2383 2602 6.909550 AACAATACCATTTCAAGTTAGCCA 57.090 33.333 0.00 0.00 0.00 4.75
2384 2603 8.601845 AAAAACAATACCATTTCAAGTTAGCC 57.398 30.769 0.00 0.00 0.00 3.93
2388 2607 9.830975 AGCTTAAAAACAATACCATTTCAAGTT 57.169 25.926 0.00 0.00 0.00 2.66
2389 2608 9.260002 CAGCTTAAAAACAATACCATTTCAAGT 57.740 29.630 0.00 0.00 0.00 3.16
2390 2609 9.474920 TCAGCTTAAAAACAATACCATTTCAAG 57.525 29.630 0.00 0.00 0.00 3.02
2391 2610 9.255304 GTCAGCTTAAAAACAATACCATTTCAA 57.745 29.630 0.00 0.00 0.00 2.69
2392 2611 8.417106 TGTCAGCTTAAAAACAATACCATTTCA 58.583 29.630 0.00 0.00 0.00 2.69
2393 2612 8.810652 TGTCAGCTTAAAAACAATACCATTTC 57.189 30.769 0.00 0.00 0.00 2.17
2394 2613 9.606631 TTTGTCAGCTTAAAAACAATACCATTT 57.393 25.926 0.00 0.00 32.16 2.32
2395 2614 9.777297 ATTTGTCAGCTTAAAAACAATACCATT 57.223 25.926 0.00 0.00 32.16 3.16
2396 2615 9.777297 AATTTGTCAGCTTAAAAACAATACCAT 57.223 25.926 0.00 0.00 32.16 3.55
2397 2616 9.255304 GAATTTGTCAGCTTAAAAACAATACCA 57.745 29.630 0.00 0.00 32.16 3.25
2398 2617 9.255304 TGAATTTGTCAGCTTAAAAACAATACC 57.745 29.630 0.00 0.00 32.16 2.73
2410 2629 9.060347 CACCTACATATATGAATTTGTCAGCTT 57.940 33.333 19.63 0.00 40.43 3.74
2411 2630 8.432013 TCACCTACATATATGAATTTGTCAGCT 58.568 33.333 19.63 0.00 40.43 4.24
2412 2631 8.607441 TCACCTACATATATGAATTTGTCAGC 57.393 34.615 19.63 0.00 40.43 4.26
2414 2633 9.725019 GGATCACCTACATATATGAATTTGTCA 57.275 33.333 19.63 0.00 41.67 3.58
2415 2634 9.950496 AGGATCACCTACATATATGAATTTGTC 57.050 33.333 19.63 8.42 45.83 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.