Multiple sequence alignment - TraesCS3B01G449300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G449300 chr3B 100.000 7742 0 0 1 7742 689993512 689985771 0.000000e+00 14297.0
1 TraesCS3B01G449300 chr3B 100.000 1336 0 0 7968 9303 689985545 689984210 0.000000e+00 2468.0
2 TraesCS3B01G449300 chr3B 87.540 1260 116 10 8045 9303 690357042 690355823 0.000000e+00 1419.0
3 TraesCS3B01G449300 chr3B 89.659 822 71 9 760 1578 690115515 690114705 0.000000e+00 1035.0
4 TraesCS3B01G449300 chr3B 92.652 626 37 5 1 618 515251044 515251668 0.000000e+00 893.0
5 TraesCS3B01G449300 chr3B 92.456 623 41 5 1 617 506728631 506729253 0.000000e+00 885.0
6 TraesCS3B01G449300 chr3B 88.819 635 51 13 5 629 98018588 98017964 0.000000e+00 761.0
7 TraesCS3B01G449300 chr3B 89.094 596 63 2 8659 9253 225453315 225452721 0.000000e+00 739.0
8 TraesCS3B01G449300 chr3B 90.909 506 38 6 8005 8510 690112959 690112462 0.000000e+00 673.0
9 TraesCS3B01G449300 chr3B 90.310 516 40 4 767 1278 690359084 690358575 0.000000e+00 667.0
10 TraesCS3B01G449300 chr3B 86.546 498 56 7 1960 2448 690357560 690357065 1.060000e-148 538.0
11 TraesCS3B01G449300 chr3B 84.536 485 36 10 1305 1754 690358521 690358041 2.380000e-120 444.0
12 TraesCS3B01G449300 chr3B 84.086 421 47 9 8040 8444 690104532 690104116 1.130000e-103 388.0
13 TraesCS3B01G449300 chr3B 85.255 373 53 2 6960 7331 131567592 131567963 5.270000e-102 383.0
14 TraesCS3B01G449300 chr3B 91.981 212 17 0 1752 1963 690357931 690357720 1.960000e-76 298.0
15 TraesCS3B01G449300 chr3B 84.191 272 39 4 1289 1558 690106244 690105975 2.580000e-65 261.0
16 TraesCS3B01G449300 chr3B 86.111 180 19 3 930 1109 690106531 690106358 1.230000e-43 189.0
17 TraesCS3B01G449300 chr3B 100.000 36 0 0 4941 4976 689988536 689988501 6.030000e-07 67.6
18 TraesCS3B01G449300 chr3B 100.000 36 0 0 4977 5012 689988572 689988537 6.030000e-07 67.6
19 TraesCS3B01G449300 chr2A 99.386 2767 15 2 4977 7742 682561344 682558579 0.000000e+00 5014.0
20 TraesCS3B01G449300 chr2A 98.373 2766 44 1 4977 7742 509974257 509971493 0.000000e+00 4857.0
21 TraesCS3B01G449300 chr2A 99.131 2532 19 3 2447 4976 682563839 682561309 0.000000e+00 4551.0
22 TraesCS3B01G449300 chr2A 98.500 2533 34 4 2447 4976 509976753 509974222 0.000000e+00 4464.0
23 TraesCS3B01G449300 chr2A 98.308 650 9 2 2446 3093 608899669 608900318 0.000000e+00 1138.0
24 TraesCS3B01G449300 chr2A 80.921 152 26 3 2049 2198 44180955 44181105 5.900000e-22 117.0
25 TraesCS3B01G449300 chr2A 100.000 43 0 0 7968 8010 509971471 509971429 7.740000e-11 80.5
26 TraesCS3B01G449300 chr1B 98.807 2766 33 0 4977 7742 222288015 222285250 0.000000e+00 4926.0
27 TraesCS3B01G449300 chr1B 98.080 2552 28 8 2431 4976 222290516 222287980 0.000000e+00 4421.0
28 TraesCS3B01G449300 chr1B 98.771 651 5 3 2445 3093 658716758 658717407 0.000000e+00 1155.0
29 TraesCS3B01G449300 chr1B 98.151 649 10 2 2447 3093 116939791 116940439 0.000000e+00 1131.0
30 TraesCS3B01G449300 chr1B 100.000 43 0 0 7968 8010 222285224 222285182 7.740000e-11 80.5
31 TraesCS3B01G449300 chr7B 98.192 2766 50 0 4977 7742 204458575 204461340 0.000000e+00 4831.0
32 TraesCS3B01G449300 chr7B 98.667 2550 27 7 2433 4976 13057383 13054835 0.000000e+00 4514.0
33 TraesCS3B01G449300 chr7B 97.554 2535 45 4 2445 4976 204456090 204458610 0.000000e+00 4322.0
34 TraesCS3B01G449300 chr7B 99.237 2228 17 0 4977 7204 13054870 13052643 0.000000e+00 4021.0
35 TraesCS3B01G449300 chr7B 97.787 497 10 1 7184 7679 13052579 13052083 0.000000e+00 856.0
36 TraesCS3B01G449300 chr7B 88.889 666 73 1 8638 9303 666516302 666516966 0.000000e+00 819.0
37 TraesCS3B01G449300 chr7B 88.108 555 62 4 8636 9189 666509757 666510308 0.000000e+00 656.0
38 TraesCS3B01G449300 chr7B 83.529 425 29 18 3189 3579 111993443 111993860 8.880000e-95 359.0
39 TraesCS3B01G449300 chr7B 100.000 41 0 0 7968 8008 204461408 204461448 1.000000e-09 76.8
40 TraesCS3B01G449300 chr3A 98.499 2532 35 3 2448 4976 210130131 210127600 0.000000e+00 4462.0
41 TraesCS3B01G449300 chr3A 99.462 2230 9 2 4977 7204 210127635 210125407 0.000000e+00 4048.0
42 TraesCS3B01G449300 chr3A 91.564 1304 103 3 8004 9303 658094483 658093183 0.000000e+00 1792.0
43 TraesCS3B01G449300 chr3A 89.226 891 76 13 760 1648 658096920 658096048 0.000000e+00 1096.0
44 TraesCS3B01G449300 chr3A 98.036 560 10 1 7184 7742 210125343 210124784 0.000000e+00 972.0
45 TraesCS3B01G449300 chr3A 87.241 290 27 8 2011 2295 658095167 658094883 1.170000e-83 322.0
46 TraesCS3B01G449300 chr3A 91.558 154 13 0 2295 2448 658094638 658094485 7.320000e-51 213.0
47 TraesCS3B01G449300 chr3A 96.226 106 1 1 1649 1754 658095941 658095839 4.470000e-38 171.0
48 TraesCS3B01G449300 chr3A 100.000 31 0 0 1962 1992 658095201 658095171 3.630000e-04 58.4
49 TraesCS3B01G449300 chr5B 97.245 617 17 0 1 617 592179 592795 0.000000e+00 1046.0
50 TraesCS3B01G449300 chr5B 91.879 628 37 6 4 620 708842796 708842172 0.000000e+00 865.0
51 TraesCS3B01G449300 chr3D 86.432 995 88 20 774 1740 523318756 523317781 0.000000e+00 1046.0
52 TraesCS3B01G449300 chr3D 87.797 631 67 8 8005 8633 523316864 523316242 0.000000e+00 730.0
53 TraesCS3B01G449300 chr3D 93.645 299 12 5 1752 2047 523317580 523317286 3.080000e-119 440.0
54 TraesCS3B01G449300 chr3D 84.593 344 31 7 773 1109 523309247 523308919 1.170000e-83 322.0
55 TraesCS3B01G449300 chr3D 80.571 350 44 18 1317 1648 523307779 523307436 2.010000e-61 248.0
56 TraesCS3B01G449300 chr3D 85.906 149 19 2 1411 1558 523308730 523308583 3.480000e-34 158.0
57 TraesCS3B01G449300 chr3D 90.526 95 9 0 1153 1247 523307874 523307780 9.810000e-25 126.0
58 TraesCS3B01G449300 chr4A 92.623 610 34 6 1 600 717640574 717641182 0.000000e+00 867.0
59 TraesCS3B01G449300 chr4A 88.496 678 77 1 8627 9303 733661926 733662603 0.000000e+00 819.0
60 TraesCS3B01G449300 chr4A 88.482 573 64 2 8732 9303 415470113 415469542 0.000000e+00 691.0
61 TraesCS3B01G449300 chr4A 94.231 104 5 1 6084 6186 146663888 146663785 3.480000e-34 158.0
62 TraesCS3B01G449300 chr7A 89.543 679 68 3 8627 9303 7668320 7667643 0.000000e+00 857.0
63 TraesCS3B01G449300 chr7A 83.420 193 29 3 4450 4640 296599174 296599365 9.600000e-40 176.0
64 TraesCS3B01G449300 chr7A 92.157 51 2 2 7972 8022 11236322 11236274 4.660000e-08 71.3
65 TraesCS3B01G449300 chr1A 79.768 1206 180 50 6570 7742 537147174 537146000 0.000000e+00 817.0
66 TraesCS3B01G449300 chr1A 85.020 247 26 7 3827 4065 392777009 392777252 3.360000e-59 241.0
67 TraesCS3B01G449300 chr1A 91.892 111 6 2 5594 5702 537147652 537147543 1.620000e-32 152.0
68 TraesCS3B01G449300 chr1A 86.957 115 8 4 5594 5702 323705149 323705036 1.270000e-23 122.0
69 TraesCS3B01G449300 chr2B 90.302 629 46 9 1 618 587230667 587231291 0.000000e+00 809.0
70 TraesCS3B01G449300 chr2B 89.600 625 46 10 1 618 67032449 67033061 0.000000e+00 776.0
71 TraesCS3B01G449300 chr6B 90.630 619 42 9 4 618 680807788 680807182 0.000000e+00 808.0
72 TraesCS3B01G449300 chr6B 82.006 678 115 6 8627 9303 716007859 716007188 3.770000e-158 569.0
73 TraesCS3B01G449300 chr6B 78.338 397 65 17 4813 5192 523282332 523281940 4.340000e-58 237.0
74 TraesCS3B01G449300 chr6B 97.727 44 1 0 7968 8011 460917413 460917370 1.000000e-09 76.8
75 TraesCS3B01G449300 chr6B 93.878 49 2 1 7968 8016 9208740 9208693 1.300000e-08 73.1
76 TraesCS3B01G449300 chr1D 79.797 1183 177 49 6570 7728 440875019 440876163 0.000000e+00 804.0
77 TraesCS3B01G449300 chr7D 89.286 644 61 3 8667 9303 6581832 6581190 0.000000e+00 800.0
78 TraesCS3B01G449300 chrUn 100.000 415 0 0 2974 3388 477237883 477237469 0.000000e+00 767.0
79 TraesCS3B01G449300 chrUn 97.674 43 1 0 7972 8014 90100608 90100566 3.600000e-09 75.0
80 TraesCS3B01G449300 chr4D 83.747 726 95 14 6546 7262 278289227 278289938 0.000000e+00 665.0
81 TraesCS3B01G449300 chr4D 95.556 45 2 0 7968 8012 365038466 365038422 1.300000e-08 73.1
82 TraesCS3B01G449300 chr6A 87.500 208 23 3 4980 5185 212224280 212224074 4.340000e-58 237.0
83 TraesCS3B01G449300 chr6A 92.523 107 7 1 6085 6190 601004505 601004611 1.620000e-32 152.0
84 TraesCS3B01G449300 chr5A 94.231 104 5 1 6084 6186 460411016 460410913 3.480000e-34 158.0
85 TraesCS3B01G449300 chr5D 89.286 56 4 2 7968 8022 466597858 466597804 1.680000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G449300 chr3B 689984210 689993512 9302 True 8382.500000 14297 100.000000 1 9303 2 chr3B.!!$R3 9302
1 TraesCS3B01G449300 chr3B 515251044 515251668 624 False 893.000000 893 92.652000 1 618 1 chr3B.!!$F3 617
2 TraesCS3B01G449300 chr3B 506728631 506729253 622 False 885.000000 885 92.456000 1 617 1 chr3B.!!$F2 616
3 TraesCS3B01G449300 chr3B 690112462 690115515 3053 True 854.000000 1035 90.284000 760 8510 2 chr3B.!!$R6 7750
4 TraesCS3B01G449300 chr3B 98017964 98018588 624 True 761.000000 761 88.819000 5 629 1 chr3B.!!$R1 624
5 TraesCS3B01G449300 chr3B 225452721 225453315 594 True 739.000000 739 89.094000 8659 9253 1 chr3B.!!$R2 594
6 TraesCS3B01G449300 chr3B 690355823 690359084 3261 True 673.200000 1419 88.182600 767 9303 5 chr3B.!!$R7 8536
7 TraesCS3B01G449300 chr3B 690104116 690106531 2415 True 279.333333 388 84.796000 930 8444 3 chr3B.!!$R5 7514
8 TraesCS3B01G449300 chr2A 682558579 682563839 5260 True 4782.500000 5014 99.258500 2447 7742 2 chr2A.!!$R2 5295
9 TraesCS3B01G449300 chr2A 509971429 509976753 5324 True 3133.833333 4857 98.957667 2447 8010 3 chr2A.!!$R1 5563
10 TraesCS3B01G449300 chr2A 608899669 608900318 649 False 1138.000000 1138 98.308000 2446 3093 1 chr2A.!!$F2 647
11 TraesCS3B01G449300 chr1B 222285182 222290516 5334 True 3142.500000 4926 98.962333 2431 8010 3 chr1B.!!$R1 5579
12 TraesCS3B01G449300 chr1B 658716758 658717407 649 False 1155.000000 1155 98.771000 2445 3093 1 chr1B.!!$F2 648
13 TraesCS3B01G449300 chr1B 116939791 116940439 648 False 1131.000000 1131 98.151000 2447 3093 1 chr1B.!!$F1 646
14 TraesCS3B01G449300 chr7B 13052083 13057383 5300 True 3130.333333 4514 98.563667 2433 7679 3 chr7B.!!$R1 5246
15 TraesCS3B01G449300 chr7B 204456090 204461448 5358 False 3076.600000 4831 98.582000 2445 8008 3 chr7B.!!$F4 5563
16 TraesCS3B01G449300 chr7B 666516302 666516966 664 False 819.000000 819 88.889000 8638 9303 1 chr7B.!!$F3 665
17 TraesCS3B01G449300 chr7B 666509757 666510308 551 False 656.000000 656 88.108000 8636 9189 1 chr7B.!!$F2 553
18 TraesCS3B01G449300 chr3A 210124784 210130131 5347 True 3160.666667 4462 98.665667 2448 7742 3 chr3A.!!$R1 5294
19 TraesCS3B01G449300 chr3A 658093183 658096920 3737 True 608.733333 1792 92.635833 760 9303 6 chr3A.!!$R2 8543
20 TraesCS3B01G449300 chr5B 592179 592795 616 False 1046.000000 1046 97.245000 1 617 1 chr5B.!!$F1 616
21 TraesCS3B01G449300 chr5B 708842172 708842796 624 True 865.000000 865 91.879000 4 620 1 chr5B.!!$R1 616
22 TraesCS3B01G449300 chr3D 523316242 523318756 2514 True 738.666667 1046 89.291333 774 8633 3 chr3D.!!$R2 7859
23 TraesCS3B01G449300 chr3D 523307436 523309247 1811 True 213.500000 322 85.399000 773 1648 4 chr3D.!!$R1 875
24 TraesCS3B01G449300 chr4A 717640574 717641182 608 False 867.000000 867 92.623000 1 600 1 chr4A.!!$F1 599
25 TraesCS3B01G449300 chr4A 733661926 733662603 677 False 819.000000 819 88.496000 8627 9303 1 chr4A.!!$F2 676
26 TraesCS3B01G449300 chr4A 415469542 415470113 571 True 691.000000 691 88.482000 8732 9303 1 chr4A.!!$R2 571
27 TraesCS3B01G449300 chr7A 7667643 7668320 677 True 857.000000 857 89.543000 8627 9303 1 chr7A.!!$R1 676
28 TraesCS3B01G449300 chr1A 537146000 537147652 1652 True 484.500000 817 85.830000 5594 7742 2 chr1A.!!$R2 2148
29 TraesCS3B01G449300 chr2B 587230667 587231291 624 False 809.000000 809 90.302000 1 618 1 chr2B.!!$F2 617
30 TraesCS3B01G449300 chr2B 67032449 67033061 612 False 776.000000 776 89.600000 1 618 1 chr2B.!!$F1 617
31 TraesCS3B01G449300 chr6B 680807182 680807788 606 True 808.000000 808 90.630000 4 618 1 chr6B.!!$R4 614
32 TraesCS3B01G449300 chr6B 716007188 716007859 671 True 569.000000 569 82.006000 8627 9303 1 chr6B.!!$R5 676
33 TraesCS3B01G449300 chr1D 440875019 440876163 1144 False 804.000000 804 79.797000 6570 7728 1 chr1D.!!$F1 1158
34 TraesCS3B01G449300 chr7D 6581190 6581832 642 True 800.000000 800 89.286000 8667 9303 1 chr7D.!!$R1 636
35 TraesCS3B01G449300 chr4D 278289227 278289938 711 False 665.000000 665 83.747000 6546 7262 1 chr4D.!!$F1 716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
418 451 0.168128 GTACACATTTCACCCAGCGC 59.832 55.000 0.00 0.00 0.00 5.92 F
419 452 0.250510 TACACATTTCACCCAGCGCA 60.251 50.000 11.47 0.00 0.00 6.09 F
1580 3186 0.462937 TTCTCCCTCTCTCTCGCTCG 60.463 60.000 0.00 0.00 0.00 5.03 F
1604 3210 1.130561 TCTCACGCACACACTAGATCG 59.869 52.381 0.00 0.00 0.00 3.69 F
2857 6930 1.270550 GCCAACACATTCCCAACAGAG 59.729 52.381 0.00 0.00 0.00 3.35 F
4959 9034 0.249955 TCGTTCATCTCCATGCAGCA 59.750 50.000 0.00 0.00 0.00 4.41 F
6051 10171 0.324923 TACTAGGTGACACCCCGCAT 60.325 55.000 21.32 4.74 39.75 4.73 F
8170 12485 0.036306 GGAACACATCGGACCAGGTT 59.964 55.000 0.00 0.00 0.00 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1580 3186 0.241213 TAGTGTGTGCGTGAGAGAGC 59.759 55.000 0.00 0.00 0.00 4.09 R
2121 5936 2.036862 AGTTACTCGAACCCACCACTTC 59.963 50.000 0.00 0.00 39.02 3.01 R
3388 7461 1.303155 GCAGAGGCTTGCTTGTCCT 60.303 57.895 12.44 0.00 40.89 3.85 R
4030 8104 7.170320 CAGTAGTAAAAAGTTCAGACGCCTTAA 59.830 37.037 0.00 0.00 0.00 1.85 R
4973 9048 0.249955 TGCATGGAGATGAACGAGCA 59.750 50.000 0.00 0.00 0.00 4.26 R
6690 10844 3.633235 ACGACATCTATGCTCATCGAAC 58.367 45.455 7.44 0.00 33.88 3.95 R
8213 12531 0.381801 GTACGGCATGCCCATTTCAG 59.618 55.000 30.79 16.96 0.00 3.02 R
9243 13579 0.108992 TCGATGAAAGAACCGTCCCG 60.109 55.000 0.00 0.00 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
273 283 1.722011 AGCGTGCGTGCTATTTAACT 58.278 45.000 0.00 0.00 45.14 2.24
416 449 2.884639 ACTTGTACACATTTCACCCAGC 59.115 45.455 0.00 0.00 0.00 4.85
417 450 1.518325 TGTACACATTTCACCCAGCG 58.482 50.000 0.00 0.00 0.00 5.18
418 451 0.168128 GTACACATTTCACCCAGCGC 59.832 55.000 0.00 0.00 0.00 5.92
419 452 0.250510 TACACATTTCACCCAGCGCA 60.251 50.000 11.47 0.00 0.00 6.09
420 453 1.106351 ACACATTTCACCCAGCGCAA 61.106 50.000 11.47 0.00 0.00 4.85
600 633 1.878953 ACGGACAAGTTTAGGCACTG 58.121 50.000 0.00 0.00 41.52 3.66
620 653 6.540189 GCACTGATGATGTATTTAACTCTGGT 59.460 38.462 0.00 0.00 0.00 4.00
621 654 7.710907 GCACTGATGATGTATTTAACTCTGGTA 59.289 37.037 0.00 0.00 0.00 3.25
622 655 9.599866 CACTGATGATGTATTTAACTCTGGTAA 57.400 33.333 0.00 0.00 0.00 2.85
651 684 8.848474 ATATTATTATTGGCAGCGAAAGTAGT 57.152 30.769 0.00 0.00 0.00 2.73
652 685 4.882671 ATTATTGGCAGCGAAAGTAGTG 57.117 40.909 0.00 0.00 0.00 2.74
653 686 0.804989 ATTGGCAGCGAAAGTAGTGC 59.195 50.000 0.00 0.00 34.88 4.40
654 687 1.565156 TTGGCAGCGAAAGTAGTGCG 61.565 55.000 0.00 0.00 35.96 5.34
655 688 1.736645 GGCAGCGAAAGTAGTGCGA 60.737 57.895 0.00 0.00 35.96 5.10
656 689 1.289109 GGCAGCGAAAGTAGTGCGAA 61.289 55.000 0.00 0.00 35.96 4.70
657 690 0.721718 GCAGCGAAAGTAGTGCGAAT 59.278 50.000 0.00 0.00 0.00 3.34
658 691 1.267087 GCAGCGAAAGTAGTGCGAATC 60.267 52.381 0.00 0.00 0.00 2.52
659 692 1.992667 CAGCGAAAGTAGTGCGAATCA 59.007 47.619 0.00 0.00 0.00 2.57
660 693 2.604914 CAGCGAAAGTAGTGCGAATCAT 59.395 45.455 0.00 0.00 0.00 2.45
661 694 3.062639 CAGCGAAAGTAGTGCGAATCATT 59.937 43.478 0.00 0.00 0.00 2.57
662 695 3.062639 AGCGAAAGTAGTGCGAATCATTG 59.937 43.478 0.00 0.00 0.00 2.82
663 696 3.062099 GCGAAAGTAGTGCGAATCATTGA 59.938 43.478 0.00 0.00 0.00 2.57
664 697 4.260375 GCGAAAGTAGTGCGAATCATTGAT 60.260 41.667 0.00 0.00 0.00 2.57
665 698 5.193216 CGAAAGTAGTGCGAATCATTGATG 58.807 41.667 0.00 0.00 0.00 3.07
666 699 5.220472 CGAAAGTAGTGCGAATCATTGATGT 60.220 40.000 0.00 0.00 0.00 3.06
667 700 5.725110 AAGTAGTGCGAATCATTGATGTC 57.275 39.130 0.00 0.21 0.00 3.06
668 701 4.758688 AGTAGTGCGAATCATTGATGTCA 58.241 39.130 0.00 0.00 0.00 3.58
669 702 4.807834 AGTAGTGCGAATCATTGATGTCAG 59.192 41.667 0.00 0.00 0.00 3.51
670 703 3.603532 AGTGCGAATCATTGATGTCAGT 58.396 40.909 0.00 0.00 0.00 3.41
671 704 3.373130 AGTGCGAATCATTGATGTCAGTG 59.627 43.478 0.00 0.00 35.25 3.66
672 705 3.125829 GTGCGAATCATTGATGTCAGTGT 59.874 43.478 0.00 0.00 35.43 3.55
673 706 4.329801 GTGCGAATCATTGATGTCAGTGTA 59.670 41.667 0.00 0.00 35.43 2.90
674 707 4.934602 TGCGAATCATTGATGTCAGTGTAA 59.065 37.500 0.00 0.00 35.43 2.41
675 708 5.163864 TGCGAATCATTGATGTCAGTGTAAC 60.164 40.000 0.00 0.00 35.43 2.50
676 709 5.727791 GCGAATCATTGATGTCAGTGTAACC 60.728 44.000 0.00 0.00 37.80 2.85
677 710 5.500771 CGAATCATTGATGTCAGTGTAACCG 60.501 44.000 0.00 3.10 37.80 4.44
678 711 4.265904 TCATTGATGTCAGTGTAACCGT 57.734 40.909 5.58 0.00 37.80 4.83
679 712 4.637276 TCATTGATGTCAGTGTAACCGTT 58.363 39.130 5.58 0.00 37.80 4.44
680 713 4.450757 TCATTGATGTCAGTGTAACCGTTG 59.549 41.667 5.58 0.00 37.80 4.10
681 714 3.737032 TGATGTCAGTGTAACCGTTGA 57.263 42.857 0.00 0.00 37.80 3.18
682 715 4.061357 TGATGTCAGTGTAACCGTTGAA 57.939 40.909 0.00 0.00 37.80 2.69
683 716 4.443621 TGATGTCAGTGTAACCGTTGAAA 58.556 39.130 0.00 0.00 37.80 2.69
684 717 4.876679 TGATGTCAGTGTAACCGTTGAAAA 59.123 37.500 0.00 0.00 37.80 2.29
685 718 4.868450 TGTCAGTGTAACCGTTGAAAAG 57.132 40.909 0.00 0.00 37.80 2.27
686 719 4.255301 TGTCAGTGTAACCGTTGAAAAGT 58.745 39.130 0.00 0.00 37.80 2.66
687 720 4.330620 TGTCAGTGTAACCGTTGAAAAGTC 59.669 41.667 0.00 0.00 37.80 3.01
688 721 4.330620 GTCAGTGTAACCGTTGAAAAGTCA 59.669 41.667 0.00 0.00 37.80 3.41
689 722 4.936411 TCAGTGTAACCGTTGAAAAGTCAA 59.064 37.500 0.00 0.00 38.56 3.18
690 723 5.411977 TCAGTGTAACCGTTGAAAAGTCAAA 59.588 36.000 0.00 0.00 41.31 2.69
691 724 5.737290 CAGTGTAACCGTTGAAAAGTCAAAG 59.263 40.000 0.00 0.00 41.31 2.77
692 725 5.644636 AGTGTAACCGTTGAAAAGTCAAAGA 59.355 36.000 4.30 0.00 43.52 2.52
693 726 6.317893 AGTGTAACCGTTGAAAAGTCAAAGAT 59.682 34.615 4.30 0.00 43.52 2.40
694 727 6.970613 GTGTAACCGTTGAAAAGTCAAAGATT 59.029 34.615 4.30 0.00 45.29 2.40
695 728 8.124199 GTGTAACCGTTGAAAAGTCAAAGATTA 58.876 33.333 4.30 0.00 45.29 1.75
696 729 8.339714 TGTAACCGTTGAAAAGTCAAAGATTAG 58.660 33.333 4.30 0.00 45.29 1.73
697 730 6.937436 ACCGTTGAAAAGTCAAAGATTAGT 57.063 33.333 4.30 0.00 45.29 2.24
698 731 6.725246 ACCGTTGAAAAGTCAAAGATTAGTG 58.275 36.000 4.30 0.00 45.29 2.74
699 732 6.317893 ACCGTTGAAAAGTCAAAGATTAGTGT 59.682 34.615 4.30 0.00 45.29 3.55
700 733 6.851330 CCGTTGAAAAGTCAAAGATTAGTGTC 59.149 38.462 4.30 0.00 45.29 3.67
701 734 7.406553 CGTTGAAAAGTCAAAGATTAGTGTCA 58.593 34.615 0.00 0.00 45.29 3.58
702 735 7.584123 CGTTGAAAAGTCAAAGATTAGTGTCAG 59.416 37.037 0.00 0.00 45.29 3.51
703 736 7.496529 TGAAAAGTCAAAGATTAGTGTCAGG 57.503 36.000 0.00 0.00 0.00 3.86
704 737 7.054124 TGAAAAGTCAAAGATTAGTGTCAGGT 58.946 34.615 0.00 0.00 0.00 4.00
705 738 7.226720 TGAAAAGTCAAAGATTAGTGTCAGGTC 59.773 37.037 0.00 0.00 0.00 3.85
706 739 5.808366 AGTCAAAGATTAGTGTCAGGTCA 57.192 39.130 0.00 0.00 0.00 4.02
707 740 6.365970 AGTCAAAGATTAGTGTCAGGTCAT 57.634 37.500 0.00 0.00 0.00 3.06
708 741 6.773638 AGTCAAAGATTAGTGTCAGGTCATT 58.226 36.000 0.00 0.00 0.00 2.57
709 742 7.227156 AGTCAAAGATTAGTGTCAGGTCATTT 58.773 34.615 0.00 0.00 0.00 2.32
710 743 7.173907 AGTCAAAGATTAGTGTCAGGTCATTTG 59.826 37.037 0.00 0.00 0.00 2.32
711 744 6.998074 TCAAAGATTAGTGTCAGGTCATTTGT 59.002 34.615 0.00 0.00 0.00 2.83
712 745 6.808008 AAGATTAGTGTCAGGTCATTTGTG 57.192 37.500 0.00 0.00 0.00 3.33
713 746 4.697352 AGATTAGTGTCAGGTCATTTGTGC 59.303 41.667 0.00 0.00 0.00 4.57
714 747 2.346766 AGTGTCAGGTCATTTGTGCA 57.653 45.000 0.00 0.00 0.00 4.57
715 748 2.653726 AGTGTCAGGTCATTTGTGCAA 58.346 42.857 0.00 0.00 0.00 4.08
716 749 3.023119 AGTGTCAGGTCATTTGTGCAAA 58.977 40.909 0.00 0.00 34.46 3.68
717 750 3.638160 AGTGTCAGGTCATTTGTGCAAAT 59.362 39.130 4.48 4.48 41.33 2.32
734 767 9.612066 TTGTGCAAATGTATATTCAGATACAGA 57.388 29.630 0.00 0.00 43.67 3.41
735 768 9.045223 TGTGCAAATGTATATTCAGATACAGAC 57.955 33.333 0.00 0.00 43.67 3.51
736 769 9.045223 GTGCAAATGTATATTCAGATACAGACA 57.955 33.333 0.00 0.00 43.67 3.41
737 770 9.783081 TGCAAATGTATATTCAGATACAGACAT 57.217 29.630 1.16 0.00 43.67 3.06
750 783 9.958180 TCAGATACAGACATTTATTTTGGAAGA 57.042 29.630 0.00 0.00 0.00 2.87
755 788 7.670364 ACAGACATTTATTTTGGAAGAAAGGG 58.330 34.615 0.00 0.00 33.46 3.95
756 789 7.508977 ACAGACATTTATTTTGGAAGAAAGGGA 59.491 33.333 0.00 0.00 33.46 4.20
757 790 8.031277 CAGACATTTATTTTGGAAGAAAGGGAG 58.969 37.037 0.00 0.00 33.46 4.30
758 791 7.730332 AGACATTTATTTTGGAAGAAAGGGAGT 59.270 33.333 0.00 0.00 33.46 3.85
786 819 0.673644 ACGCACTGAATACTGGGCAC 60.674 55.000 0.00 0.00 43.04 5.01
991 1035 6.128634 CGAACCCAAATACAGTACTTGTCTTC 60.129 42.308 0.00 1.26 41.29 2.87
1003 1047 1.198094 TTGTCTTCCTCCGGCCATGA 61.198 55.000 2.24 0.00 0.00 3.07
1222 2268 3.309436 CTCGTCGCCACCATTCCCA 62.309 63.158 0.00 0.00 0.00 4.37
1250 2296 2.324014 AATGCGGAATCCAGCGGCTA 62.324 55.000 0.26 0.00 35.87 3.93
1263 2309 3.053455 CAGCGGCTACTCTTATTACAGC 58.947 50.000 0.26 0.00 0.00 4.40
1266 2312 3.794475 GCGGCTACTCTTATTACAGCGAA 60.794 47.826 0.00 0.00 32.97 4.70
1273 2319 4.141937 ACTCTTATTACAGCGAATCCTGCA 60.142 41.667 0.00 0.00 36.29 4.41
1278 2324 1.886313 CAGCGAATCCTGCAGCGAT 60.886 57.895 8.66 9.97 33.85 4.58
1279 2325 1.153289 AGCGAATCCTGCAGCGATT 60.153 52.632 22.62 22.62 32.62 3.34
1280 2326 1.156645 AGCGAATCCTGCAGCGATTC 61.157 55.000 29.41 29.41 41.40 2.52
1282 2328 1.293924 CGAATCCTGCAGCGATTCTT 58.706 50.000 32.30 16.72 42.23 2.52
1283 2329 2.473816 CGAATCCTGCAGCGATTCTTA 58.526 47.619 32.30 8.18 42.23 2.10
1285 2331 3.496130 CGAATCCTGCAGCGATTCTTATT 59.504 43.478 32.30 15.74 42.23 1.40
1286 2332 4.376819 CGAATCCTGCAGCGATTCTTATTC 60.377 45.833 32.30 19.85 42.23 1.75
1289 2335 1.528586 CTGCAGCGATTCTTATTCCGG 59.471 52.381 0.00 0.00 0.00 5.14
1293 2339 1.766496 AGCGATTCTTATTCCGGGGAA 59.234 47.619 0.00 2.05 38.59 3.97
1294 2340 2.372172 AGCGATTCTTATTCCGGGGAAT 59.628 45.455 16.57 16.57 45.58 3.01
1295 2341 2.742589 GCGATTCTTATTCCGGGGAATC 59.257 50.000 15.89 12.08 43.04 2.52
1296 2342 3.335579 CGATTCTTATTCCGGGGAATCC 58.664 50.000 15.89 0.00 43.04 3.01
1307 2380 0.467290 GGGGAATCCCGCAATTGCTA 60.467 55.000 26.86 13.35 46.66 3.49
1313 2386 1.588674 TCCCGCAATTGCTATTACGG 58.411 50.000 26.86 21.24 46.01 4.02
1315 2388 0.660488 CCGCAATTGCTATTACGGCA 59.340 50.000 26.86 0.00 42.13 5.69
1366 2439 4.504916 CCTCCGCCGACTGCTCAG 62.505 72.222 0.00 0.00 38.05 3.35
1555 3147 0.526954 CGGCGACCGCAGTAGTAAAT 60.527 55.000 16.47 0.00 41.17 1.40
1561 3153 3.930848 CGACCGCAGTAGTAAATTCCTTT 59.069 43.478 0.00 0.00 0.00 3.11
1566 3172 5.064834 CCGCAGTAGTAAATTCCTTTTCTCC 59.935 44.000 0.00 0.00 0.00 3.71
1576 3182 2.729194 TCCTTTTCTCCCTCTCTCTCG 58.271 52.381 0.00 0.00 0.00 4.04
1580 3186 0.462937 TTCTCCCTCTCTCTCGCTCG 60.463 60.000 0.00 0.00 0.00 5.03
1604 3210 1.130561 TCTCACGCACACACTAGATCG 59.869 52.381 0.00 0.00 0.00 3.69
1606 3212 1.538075 TCACGCACACACTAGATCGAA 59.462 47.619 0.00 0.00 0.00 3.71
1749 4074 9.840427 TGCAAAAATTATTTTCTAGTAGCTCAC 57.160 29.630 3.23 0.00 36.62 3.51
1791 4117 8.773404 AACATTTTCTACGCTAAGAAGTACAT 57.227 30.769 0.00 0.00 36.85 2.29
1882 4208 8.594881 TGAAGAGTTGAAGACAAATAGAGAAC 57.405 34.615 0.00 0.00 37.77 3.01
2056 5868 4.973168 AGAGAGCAGTTTTAACATGGTCA 58.027 39.130 17.81 0.00 42.44 4.02
2064 5876 6.204882 GCAGTTTTAACATGGTCACTCTTACT 59.795 38.462 0.00 0.00 0.00 2.24
2067 5879 8.211629 AGTTTTAACATGGTCACTCTTACTTCT 58.788 33.333 0.00 0.00 0.00 2.85
2081 5893 8.830580 CACTCTTACTTCTTCTTTTCACATGAA 58.169 33.333 0.00 0.00 0.00 2.57
2121 5936 3.376234 AGATCTGTGCCGTTGATTTCATG 59.624 43.478 0.00 0.00 0.00 3.07
2126 5941 3.236816 GTGCCGTTGATTTCATGAAGTG 58.763 45.455 8.35 0.00 0.00 3.16
2133 5948 3.843422 TGATTTCATGAAGTGGTGGGTT 58.157 40.909 8.35 0.00 0.00 4.11
2178 5996 3.435671 CCCGTGTGAAAAGAGGATGTAAC 59.564 47.826 0.00 0.00 0.00 2.50
2180 5998 4.695455 CCGTGTGAAAAGAGGATGTAACAT 59.305 41.667 0.00 0.00 0.00 2.71
2219 6038 9.877222 AATTTAAAAAGAGAAGGTAAGAGGGAA 57.123 29.630 0.00 0.00 0.00 3.97
2230 6051 4.019591 AGGTAAGAGGGAACGTGCTAAAAT 60.020 41.667 0.00 0.00 0.00 1.82
2236 6057 2.415491 GGGAACGTGCTAAAATTGCTCC 60.415 50.000 0.00 0.00 0.00 4.70
2286 6108 7.043565 TCTTTCATTAGGTACGGTGGTTATTC 58.956 38.462 0.00 0.00 0.00 1.75
2290 6113 5.999205 TTAGGTACGGTGGTTATTCTGAA 57.001 39.130 0.00 0.00 0.00 3.02
2404 6472 2.307768 TGCCAATTTGGACAACCGTAA 58.692 42.857 19.76 0.00 40.96 3.18
2405 6473 2.034812 TGCCAATTTGGACAACCGTAAC 59.965 45.455 19.76 0.00 40.96 2.50
2407 6475 3.502979 GCCAATTTGGACAACCGTAACTA 59.497 43.478 19.76 0.00 40.96 2.24
2437 6506 3.129287 GGTCTTGCCATCACCTTAATGTG 59.871 47.826 4.64 4.64 37.17 3.21
2492 6562 2.843669 GGATTGCGTCCACGGTTAA 58.156 52.632 0.55 0.00 46.96 2.01
2526 6596 9.819267 TGGTTTATTTTCGTCTGGTTTATTTTT 57.181 25.926 0.00 0.00 0.00 1.94
2857 6930 1.270550 GCCAACACATTCCCAACAGAG 59.729 52.381 0.00 0.00 0.00 3.35
2926 6999 2.165845 CCCTCGATCTGTTTCCTACGTT 59.834 50.000 0.00 0.00 0.00 3.99
3622 7695 7.489160 GTTTCCAAACAGACTCAAGGTAATTT 58.511 34.615 0.00 0.00 38.74 1.82
4168 8243 2.762887 CTGTTCTGAGCTCCTCCATGTA 59.237 50.000 12.15 0.00 0.00 2.29
4352 8427 5.065704 AGCAGATTCTCGCGATATGTTAT 57.934 39.130 10.36 0.00 0.00 1.89
4863 8938 2.165030 CAGATCCTGGCGCATTTTTCTT 59.835 45.455 10.83 0.00 0.00 2.52
4941 9016 0.390998 GTCTCAGCCAAGCAGGAGTC 60.391 60.000 0.00 0.00 41.22 3.36
4942 9017 1.447489 CTCAGCCAAGCAGGAGTCG 60.447 63.158 0.00 0.00 41.22 4.18
4943 9018 2.164865 CTCAGCCAAGCAGGAGTCGT 62.165 60.000 0.00 0.00 41.22 4.34
4944 9019 1.302033 CAGCCAAGCAGGAGTCGTT 60.302 57.895 0.00 0.00 41.22 3.85
4945 9020 1.004440 AGCCAAGCAGGAGTCGTTC 60.004 57.895 0.00 0.00 41.22 3.95
4946 9021 1.301716 GCCAAGCAGGAGTCGTTCA 60.302 57.895 0.00 0.00 41.22 3.18
4947 9022 0.674895 GCCAAGCAGGAGTCGTTCAT 60.675 55.000 0.00 0.00 41.22 2.57
4948 9023 1.363744 CCAAGCAGGAGTCGTTCATC 58.636 55.000 0.00 0.00 41.22 2.92
4949 9024 1.066573 CCAAGCAGGAGTCGTTCATCT 60.067 52.381 0.00 0.00 41.22 2.90
4950 9025 2.266554 CAAGCAGGAGTCGTTCATCTC 58.733 52.381 0.00 0.00 0.00 2.75
4955 9030 1.576356 GGAGTCGTTCATCTCCATGC 58.424 55.000 6.37 0.00 46.59 4.06
4956 9031 1.134699 GGAGTCGTTCATCTCCATGCA 60.135 52.381 6.37 0.00 46.59 3.96
4957 9032 2.200067 GAGTCGTTCATCTCCATGCAG 58.800 52.381 0.00 0.00 0.00 4.41
4958 9033 0.654683 GTCGTTCATCTCCATGCAGC 59.345 55.000 0.00 0.00 0.00 5.25
4959 9034 0.249955 TCGTTCATCTCCATGCAGCA 59.750 50.000 0.00 0.00 0.00 4.41
4960 9035 0.656259 CGTTCATCTCCATGCAGCAG 59.344 55.000 0.00 0.00 0.00 4.24
4961 9036 1.022735 GTTCATCTCCATGCAGCAGG 58.977 55.000 0.00 0.00 0.00 4.85
4962 9037 0.913924 TTCATCTCCATGCAGCAGGA 59.086 50.000 9.10 10.71 0.00 3.86
4963 9038 0.468648 TCATCTCCATGCAGCAGGAG 59.531 55.000 24.50 24.50 41.65 3.69
4964 9039 1.148723 ATCTCCATGCAGCAGGAGC 59.851 57.895 25.17 0.26 41.65 4.70
4966 9041 1.378119 CTCCATGCAGCAGGAGCAA 60.378 57.895 21.12 1.02 46.27 3.91
4967 9042 1.654954 CTCCATGCAGCAGGAGCAAC 61.655 60.000 21.12 0.00 46.27 4.17
4968 9043 2.483745 CATGCAGCAGGAGCAACG 59.516 61.111 0.00 0.00 46.27 4.10
4969 9044 3.437795 ATGCAGCAGGAGCAACGC 61.438 61.111 0.00 0.00 46.27 4.84
5255 9330 4.935205 CGGACCTGAATTACATCAAAGACA 59.065 41.667 0.00 0.00 0.00 3.41
5545 9620 5.827267 TCTATCTCAGATTCTCAGTCACAGG 59.173 44.000 0.00 0.00 0.00 4.00
6011 10131 9.491675 TGTAACTTCGGAAATTAAGTATGTTGA 57.508 29.630 0.00 0.00 34.91 3.18
6051 10171 0.324923 TACTAGGTGACACCCCGCAT 60.325 55.000 21.32 4.74 39.75 4.73
6690 10844 1.403972 GCACGAAGAACGCTACCGAG 61.404 60.000 0.00 0.00 46.94 4.63
8037 12339 5.512576 GGTCGACTGGCTAATATTAACCCAT 60.513 44.000 16.46 1.04 0.00 4.00
8119 12434 9.830975 AACTTGAAATGGTATTGTTTTTAAGCT 57.169 25.926 0.00 0.00 32.34 3.74
8170 12485 0.036306 GGAACACATCGGACCAGGTT 59.964 55.000 0.00 0.00 0.00 3.50
8213 12531 3.791973 ATGAGGAGAACATCACGAGAC 57.208 47.619 0.00 0.00 39.59 3.36
8217 12535 3.157881 AGGAGAACATCACGAGACTGAA 58.842 45.455 0.00 0.00 0.00 3.02
8351 12669 5.540337 TGTGTGTTCTATTTGGGCCATTTAA 59.460 36.000 7.26 0.00 0.00 1.52
8409 12730 5.813672 TGTAATAACGGAAGGTTGAGCATAC 59.186 40.000 0.00 0.00 39.75 2.39
8423 12744 4.058124 TGAGCATACGCATTATGGAGAAC 58.942 43.478 4.85 0.00 42.27 3.01
8431 12752 3.879295 CGCATTATGGAGAACACATTCCT 59.121 43.478 0.00 0.00 35.18 3.36
8474 12795 5.660533 AGGTAAGAAAAATGGGAATTGGGA 58.339 37.500 0.00 0.00 0.00 4.37
8523 12845 4.408182 TTGCTAAGTTGGGCTCTAGATC 57.592 45.455 0.00 0.00 0.00 2.75
8634 12957 1.603739 GCGGCCCACCTTTTCTTCT 60.604 57.895 0.00 0.00 0.00 2.85
8672 12996 7.258441 CAGCAAATGTCAAAGATGAGATCAAT 58.742 34.615 0.00 0.00 38.52 2.57
8902 13237 3.430895 TCGTGTTTCAAATAACCGAGAGC 59.569 43.478 0.00 0.00 31.70 4.09
8910 13245 3.838244 AATAACCGAGAGCCTTATGCA 57.162 42.857 0.00 0.00 44.83 3.96
8966 13301 1.625315 GGAAGCAAGGAAGGCCAAAAT 59.375 47.619 5.01 0.00 36.29 1.82
9042 13377 6.099701 TGGATTGGGATTTAGAGAATTCGAGA 59.900 38.462 0.00 0.00 0.00 4.04
9054 13389 7.595819 AGAGAATTCGAGATCTTCAACCTAT 57.404 36.000 0.00 0.00 0.00 2.57
9119 13455 6.295249 TCACACTCTTTGTTCCATGATGTTA 58.705 36.000 0.00 0.00 35.67 2.41
9123 13459 8.474025 ACACTCTTTGTTCCATGATGTTAAAAA 58.526 29.630 0.00 0.00 33.09 1.94
9160 13496 4.550831 CGCTCGTAATATTTTGTCAGCCAG 60.551 45.833 0.00 0.00 0.00 4.85
9191 13527 2.224378 CCATCCTTCACAGATATGGCGT 60.224 50.000 0.00 0.00 30.77 5.68
9193 13529 2.107366 TCCTTCACAGATATGGCGTGA 58.893 47.619 0.00 0.00 37.87 4.35
9243 13579 2.675348 CAAGGCTTGATCCGAAGAGTTC 59.325 50.000 22.64 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
273 283 2.606519 CGACCCTGGGACCTCCAA 60.607 66.667 22.23 0.00 46.51 3.53
416 449 2.186160 TGGGTGAGTGTTGCTTGCG 61.186 57.895 0.00 0.00 0.00 4.85
417 450 1.103398 AGTGGGTGAGTGTTGCTTGC 61.103 55.000 0.00 0.00 0.00 4.01
418 451 0.664761 CAGTGGGTGAGTGTTGCTTG 59.335 55.000 0.00 0.00 0.00 4.01
419 452 0.546122 TCAGTGGGTGAGTGTTGCTT 59.454 50.000 0.00 0.00 0.00 3.91
420 453 0.767375 ATCAGTGGGTGAGTGTTGCT 59.233 50.000 0.00 0.00 39.07 3.91
625 658 9.938280 ACTACTTTCGCTGCCAATAATAATATA 57.062 29.630 0.00 0.00 0.00 0.86
626 659 8.721478 CACTACTTTCGCTGCCAATAATAATAT 58.279 33.333 0.00 0.00 0.00 1.28
627 660 7.307751 GCACTACTTTCGCTGCCAATAATAATA 60.308 37.037 0.00 0.00 0.00 0.98
628 661 6.513393 GCACTACTTTCGCTGCCAATAATAAT 60.513 38.462 0.00 0.00 0.00 1.28
629 662 5.220777 GCACTACTTTCGCTGCCAATAATAA 60.221 40.000 0.00 0.00 0.00 1.40
630 663 4.272504 GCACTACTTTCGCTGCCAATAATA 59.727 41.667 0.00 0.00 0.00 0.98
631 664 3.065371 GCACTACTTTCGCTGCCAATAAT 59.935 43.478 0.00 0.00 0.00 1.28
632 665 2.418628 GCACTACTTTCGCTGCCAATAA 59.581 45.455 0.00 0.00 0.00 1.40
633 666 2.006888 GCACTACTTTCGCTGCCAATA 58.993 47.619 0.00 0.00 0.00 1.90
634 667 0.804989 GCACTACTTTCGCTGCCAAT 59.195 50.000 0.00 0.00 0.00 3.16
635 668 1.565156 CGCACTACTTTCGCTGCCAA 61.565 55.000 0.00 0.00 0.00 4.52
636 669 2.027073 CGCACTACTTTCGCTGCCA 61.027 57.895 0.00 0.00 0.00 4.92
637 670 1.289109 TTCGCACTACTTTCGCTGCC 61.289 55.000 0.00 0.00 0.00 4.85
638 671 0.721718 ATTCGCACTACTTTCGCTGC 59.278 50.000 0.00 0.00 0.00 5.25
639 672 1.992667 TGATTCGCACTACTTTCGCTG 59.007 47.619 0.00 0.00 0.00 5.18
640 673 2.363788 TGATTCGCACTACTTTCGCT 57.636 45.000 0.00 0.00 0.00 4.93
641 674 3.062099 TCAATGATTCGCACTACTTTCGC 59.938 43.478 0.00 0.00 0.00 4.70
642 675 4.840401 TCAATGATTCGCACTACTTTCG 57.160 40.909 0.00 0.00 0.00 3.46
643 676 6.111768 ACATCAATGATTCGCACTACTTTC 57.888 37.500 0.00 0.00 0.00 2.62
644 677 5.643348 TGACATCAATGATTCGCACTACTTT 59.357 36.000 0.00 0.00 0.00 2.66
645 678 5.178061 TGACATCAATGATTCGCACTACTT 58.822 37.500 0.00 0.00 0.00 2.24
646 679 4.758688 TGACATCAATGATTCGCACTACT 58.241 39.130 0.00 0.00 0.00 2.57
647 680 4.568359 ACTGACATCAATGATTCGCACTAC 59.432 41.667 0.00 0.00 0.00 2.73
648 681 4.567959 CACTGACATCAATGATTCGCACTA 59.432 41.667 0.00 0.00 0.00 2.74
649 682 3.373130 CACTGACATCAATGATTCGCACT 59.627 43.478 0.00 0.00 0.00 4.40
650 683 3.125829 ACACTGACATCAATGATTCGCAC 59.874 43.478 0.00 0.00 0.00 5.34
651 684 3.337358 ACACTGACATCAATGATTCGCA 58.663 40.909 0.00 0.00 0.00 5.10
652 685 5.258622 GTTACACTGACATCAATGATTCGC 58.741 41.667 0.00 0.00 0.00 4.70
653 686 5.500771 CGGTTACACTGACATCAATGATTCG 60.501 44.000 0.00 0.00 0.00 3.34
654 687 5.351465 ACGGTTACACTGACATCAATGATTC 59.649 40.000 0.00 0.00 0.00 2.52
655 688 5.245531 ACGGTTACACTGACATCAATGATT 58.754 37.500 0.00 0.00 0.00 2.57
656 689 4.832248 ACGGTTACACTGACATCAATGAT 58.168 39.130 0.00 0.00 0.00 2.45
657 690 4.265904 ACGGTTACACTGACATCAATGA 57.734 40.909 0.00 0.00 0.00 2.57
658 691 4.450757 TCAACGGTTACACTGACATCAATG 59.549 41.667 0.00 0.00 0.00 2.82
659 692 4.637276 TCAACGGTTACACTGACATCAAT 58.363 39.130 0.00 0.00 0.00 2.57
660 693 4.061357 TCAACGGTTACACTGACATCAA 57.939 40.909 0.00 0.00 0.00 2.57
661 694 3.737032 TCAACGGTTACACTGACATCA 57.263 42.857 0.00 0.00 0.00 3.07
662 695 5.007332 ACTTTTCAACGGTTACACTGACATC 59.993 40.000 0.00 0.00 0.00 3.06
663 696 4.879545 ACTTTTCAACGGTTACACTGACAT 59.120 37.500 0.00 0.00 0.00 3.06
664 697 4.255301 ACTTTTCAACGGTTACACTGACA 58.745 39.130 0.00 0.00 0.00 3.58
665 698 4.330620 TGACTTTTCAACGGTTACACTGAC 59.669 41.667 0.00 0.00 0.00 3.51
666 699 4.505808 TGACTTTTCAACGGTTACACTGA 58.494 39.130 0.00 0.00 0.00 3.41
667 700 4.868450 TGACTTTTCAACGGTTACACTG 57.132 40.909 0.00 0.00 0.00 3.66
668 701 5.644636 TCTTTGACTTTTCAACGGTTACACT 59.355 36.000 0.00 0.00 41.64 3.55
669 702 5.871539 TCTTTGACTTTTCAACGGTTACAC 58.128 37.500 0.00 0.00 41.64 2.90
670 703 6.687081 ATCTTTGACTTTTCAACGGTTACA 57.313 33.333 0.00 0.00 41.64 2.41
671 704 8.340443 ACTAATCTTTGACTTTTCAACGGTTAC 58.660 33.333 0.00 0.00 41.64 2.50
672 705 8.339714 CACTAATCTTTGACTTTTCAACGGTTA 58.660 33.333 0.00 0.00 41.64 2.85
673 706 7.148137 ACACTAATCTTTGACTTTTCAACGGTT 60.148 33.333 0.00 0.00 41.64 4.44
674 707 6.317893 ACACTAATCTTTGACTTTTCAACGGT 59.682 34.615 0.00 0.00 41.64 4.83
675 708 6.725246 ACACTAATCTTTGACTTTTCAACGG 58.275 36.000 0.00 0.00 41.64 4.44
676 709 7.406553 TGACACTAATCTTTGACTTTTCAACG 58.593 34.615 0.00 0.00 41.64 4.10
677 710 7.857885 CCTGACACTAATCTTTGACTTTTCAAC 59.142 37.037 0.00 0.00 41.64 3.18
678 711 7.556275 ACCTGACACTAATCTTTGACTTTTCAA 59.444 33.333 0.00 0.00 40.14 2.69
679 712 7.054124 ACCTGACACTAATCTTTGACTTTTCA 58.946 34.615 0.00 0.00 0.00 2.69
680 713 7.226720 TGACCTGACACTAATCTTTGACTTTTC 59.773 37.037 0.00 0.00 0.00 2.29
681 714 7.054124 TGACCTGACACTAATCTTTGACTTTT 58.946 34.615 0.00 0.00 0.00 2.27
682 715 6.591935 TGACCTGACACTAATCTTTGACTTT 58.408 36.000 0.00 0.00 0.00 2.66
683 716 6.174720 TGACCTGACACTAATCTTTGACTT 57.825 37.500 0.00 0.00 0.00 3.01
684 717 5.808366 TGACCTGACACTAATCTTTGACT 57.192 39.130 0.00 0.00 0.00 3.41
685 718 7.041098 ACAAATGACCTGACACTAATCTTTGAC 60.041 37.037 0.00 0.00 0.00 3.18
686 719 6.998074 ACAAATGACCTGACACTAATCTTTGA 59.002 34.615 0.00 0.00 0.00 2.69
687 720 7.080099 CACAAATGACCTGACACTAATCTTTG 58.920 38.462 0.00 0.00 0.00 2.77
688 721 6.294176 GCACAAATGACCTGACACTAATCTTT 60.294 38.462 0.00 0.00 0.00 2.52
689 722 5.182001 GCACAAATGACCTGACACTAATCTT 59.818 40.000 0.00 0.00 0.00 2.40
690 723 4.697352 GCACAAATGACCTGACACTAATCT 59.303 41.667 0.00 0.00 0.00 2.40
691 724 4.455533 TGCACAAATGACCTGACACTAATC 59.544 41.667 0.00 0.00 0.00 1.75
692 725 4.397420 TGCACAAATGACCTGACACTAAT 58.603 39.130 0.00 0.00 0.00 1.73
693 726 3.814625 TGCACAAATGACCTGACACTAA 58.185 40.909 0.00 0.00 0.00 2.24
694 727 3.483808 TGCACAAATGACCTGACACTA 57.516 42.857 0.00 0.00 0.00 2.74
695 728 2.346766 TGCACAAATGACCTGACACT 57.653 45.000 0.00 0.00 0.00 3.55
696 729 3.435105 TTTGCACAAATGACCTGACAC 57.565 42.857 0.00 0.00 0.00 3.67
708 741 9.612066 TCTGTATCTGAATATACATTTGCACAA 57.388 29.630 0.00 0.00 40.59 3.33
709 742 9.045223 GTCTGTATCTGAATATACATTTGCACA 57.955 33.333 0.00 0.00 40.59 4.57
710 743 9.045223 TGTCTGTATCTGAATATACATTTGCAC 57.955 33.333 0.00 0.00 40.59 4.57
711 744 9.783081 ATGTCTGTATCTGAATATACATTTGCA 57.217 29.630 0.00 0.00 40.59 4.08
724 757 9.958180 TCTTCCAAAATAAATGTCTGTATCTGA 57.042 29.630 0.00 0.00 0.00 3.27
729 762 8.802267 CCCTTTCTTCCAAAATAAATGTCTGTA 58.198 33.333 0.00 0.00 0.00 2.74
730 763 7.508977 TCCCTTTCTTCCAAAATAAATGTCTGT 59.491 33.333 0.00 0.00 0.00 3.41
731 764 7.895759 TCCCTTTCTTCCAAAATAAATGTCTG 58.104 34.615 0.00 0.00 0.00 3.51
732 765 7.730332 ACTCCCTTTCTTCCAAAATAAATGTCT 59.270 33.333 0.00 0.00 0.00 3.41
733 766 7.896811 ACTCCCTTTCTTCCAAAATAAATGTC 58.103 34.615 0.00 0.00 0.00 3.06
734 767 7.855784 ACTCCCTTTCTTCCAAAATAAATGT 57.144 32.000 0.00 0.00 0.00 2.71
735 768 9.025041 AGTACTCCCTTTCTTCCAAAATAAATG 57.975 33.333 0.00 0.00 0.00 2.32
739 772 9.734984 CTTTAGTACTCCCTTTCTTCCAAAATA 57.265 33.333 0.00 0.00 0.00 1.40
740 773 8.225416 ACTTTAGTACTCCCTTTCTTCCAAAAT 58.775 33.333 0.00 0.00 0.00 1.82
741 774 7.580007 ACTTTAGTACTCCCTTTCTTCCAAAA 58.420 34.615 0.00 0.00 0.00 2.44
742 775 7.145474 ACTTTAGTACTCCCTTTCTTCCAAA 57.855 36.000 0.00 0.00 0.00 3.28
743 776 6.758806 ACTTTAGTACTCCCTTTCTTCCAA 57.241 37.500 0.00 0.00 0.00 3.53
744 777 6.071728 CGTACTTTAGTACTCCCTTTCTTCCA 60.072 42.308 15.79 0.00 46.43 3.53
745 778 6.328714 CGTACTTTAGTACTCCCTTTCTTCC 58.671 44.000 15.79 0.00 46.43 3.46
746 779 5.804473 GCGTACTTTAGTACTCCCTTTCTTC 59.196 44.000 15.79 0.00 46.43 2.87
747 780 5.244626 TGCGTACTTTAGTACTCCCTTTCTT 59.755 40.000 15.79 0.00 46.43 2.52
748 781 4.768968 TGCGTACTTTAGTACTCCCTTTCT 59.231 41.667 15.79 0.00 46.43 2.52
749 782 4.861462 GTGCGTACTTTAGTACTCCCTTTC 59.139 45.833 15.79 0.00 46.43 2.62
750 783 4.525874 AGTGCGTACTTTAGTACTCCCTTT 59.474 41.667 15.79 0.00 46.43 3.11
751 784 4.082354 CAGTGCGTACTTTAGTACTCCCTT 60.082 45.833 15.79 0.00 46.43 3.95
752 785 3.442977 CAGTGCGTACTTTAGTACTCCCT 59.557 47.826 15.79 4.33 46.43 4.20
753 786 3.441572 TCAGTGCGTACTTTAGTACTCCC 59.558 47.826 15.79 2.27 46.43 4.30
754 787 4.691860 TCAGTGCGTACTTTAGTACTCC 57.308 45.455 15.79 8.75 46.43 3.85
755 788 7.428761 CAGTATTCAGTGCGTACTTTAGTACTC 59.571 40.741 15.79 9.97 46.43 2.59
756 789 7.249147 CAGTATTCAGTGCGTACTTTAGTACT 58.751 38.462 15.79 8.94 46.43 2.73
757 790 6.471519 CCAGTATTCAGTGCGTACTTTAGTAC 59.528 42.308 2.37 9.50 45.47 2.73
758 791 6.405065 CCCAGTATTCAGTGCGTACTTTAGTA 60.405 42.308 2.37 0.00 34.07 1.82
762 795 3.596214 CCCAGTATTCAGTGCGTACTTT 58.404 45.455 2.37 0.00 34.07 2.66
770 803 1.278985 TCAGGTGCCCAGTATTCAGTG 59.721 52.381 0.00 0.00 0.00 3.66
779 812 0.037303 ACATGTTCTCAGGTGCCCAG 59.963 55.000 0.00 0.00 37.20 4.45
786 819 4.180057 GCTCTCAAGTACATGTTCTCAGG 58.820 47.826 2.30 0.00 0.00 3.86
932 973 1.670949 GGTGCTCTGATCTGGCGAGA 61.671 60.000 0.00 0.00 0.00 4.04
1018 1062 1.667191 GCGATGCGAGCAGGATGAT 60.667 57.895 3.58 0.00 39.69 2.45
1111 1155 4.166011 GACGATGCCGCACTTGCC 62.166 66.667 0.00 0.00 39.95 4.52
1112 1156 4.166011 GGACGATGCCGCACTTGC 62.166 66.667 0.00 0.00 39.95 4.01
1123 1167 3.537874 GGCTACGGGCAGGACGAT 61.538 66.667 5.12 0.00 44.01 3.73
1193 2239 2.573869 CGACGAGATGGTGCAGGT 59.426 61.111 0.00 0.00 0.00 4.00
1199 2245 1.899437 AATGGTGGCGACGAGATGGT 61.899 55.000 0.00 0.00 0.00 3.55
1222 2268 1.376609 GATTCCGCATTCGCCTTGGT 61.377 55.000 0.00 0.00 33.11 3.67
1250 2296 4.141937 TGCAGGATTCGCTGTAATAAGAGT 60.142 41.667 0.00 0.00 0.00 3.24
1266 2312 3.406764 GGAATAAGAATCGCTGCAGGAT 58.593 45.455 17.12 13.38 0.00 3.24
1273 2319 1.420430 TCCCCGGAATAAGAATCGCT 58.580 50.000 0.73 0.00 0.00 4.93
1289 2335 6.382126 CGTAATAGCAATTGCGGGATTCCC 62.382 50.000 24.02 12.14 44.44 3.97
1329 2402 1.301623 CACAATCCGGTTGGGGCTA 59.698 57.895 17.36 0.00 42.28 3.93
1544 3129 6.181190 AGGGAGAAAAGGAATTTACTACTGC 58.819 40.000 0.00 0.00 0.00 4.40
1555 3147 3.093057 CGAGAGAGAGGGAGAAAAGGAA 58.907 50.000 0.00 0.00 0.00 3.36
1561 3153 0.462937 CGAGCGAGAGAGAGGGAGAA 60.463 60.000 0.00 0.00 0.00 2.87
1566 3172 1.498865 GAGAGCGAGCGAGAGAGAGG 61.499 65.000 0.00 0.00 0.00 3.69
1576 3182 2.878520 GTGCGTGAGAGAGCGAGC 60.879 66.667 0.00 0.00 35.87 5.03
1580 3186 0.241213 TAGTGTGTGCGTGAGAGAGC 59.759 55.000 0.00 0.00 0.00 4.09
1619 3260 6.580791 GCTCTCAGAGTGATGTACGAATATTC 59.419 42.308 2.93 5.30 31.39 1.75
1622 3263 4.276183 GGCTCTCAGAGTGATGTACGAATA 59.724 45.833 2.93 0.00 31.39 1.75
1743 3799 7.125811 TGTTAAGATCCCTTACAATAGTGAGCT 59.874 37.037 0.00 0.00 34.80 4.09
1744 3800 7.272978 TGTTAAGATCCCTTACAATAGTGAGC 58.727 38.462 0.00 0.00 34.80 4.26
1745 3801 9.838339 AATGTTAAGATCCCTTACAATAGTGAG 57.162 33.333 0.00 0.00 34.80 3.51
1788 4114 7.149973 GCCAATTTTATGCATGAGACATATGT 58.850 34.615 8.43 8.43 30.42 2.29
1791 4117 6.712179 TGCCAATTTTATGCATGAGACATA 57.288 33.333 10.16 0.00 0.00 2.29
1882 4208 4.273480 AGTTTCATTTCGGGATATGCTTCG 59.727 41.667 0.00 0.00 0.00 3.79
2056 5868 8.964476 TTCATGTGAAAAGAAGAAGTAAGAGT 57.036 30.769 0.00 0.00 0.00 3.24
2064 5876 9.801873 CTTTTACCTTTCATGTGAAAAGAAGAA 57.198 29.630 10.23 3.41 42.72 2.52
2121 5936 2.036862 AGTTACTCGAACCCACCACTTC 59.963 50.000 0.00 0.00 39.02 3.01
2126 5941 3.509184 AGTAAGAGTTACTCGAACCCACC 59.491 47.826 6.73 0.00 42.62 4.61
2197 6015 6.042437 ACGTTCCCTCTTACCTTCTCTTTTTA 59.958 38.462 0.00 0.00 0.00 1.52
2219 6038 5.699097 TTAAAGGAGCAATTTTAGCACGT 57.301 34.783 0.00 0.00 0.00 4.49
2230 6051 5.646360 CCTCGAAGGTATTTTAAAGGAGCAA 59.354 40.000 0.00 0.00 0.00 3.91
2437 6506 6.435904 ACATTAGGAGTAGAGATATGTGAGGC 59.564 42.308 0.00 0.00 0.00 4.70
2492 6562 6.348213 CCAGACGAAAATAAACCAGACGAAAT 60.348 38.462 0.00 0.00 0.00 2.17
2526 6596 3.742369 GTGAGACGAAAATAAACCGGACA 59.258 43.478 9.46 0.00 0.00 4.02
2857 6930 9.853921 GTTGAATTCTGATTTGTGATTTTTGAC 57.146 29.630 7.05 0.00 0.00 3.18
2926 6999 2.577059 GGGCGTCCTTGTCGATCA 59.423 61.111 0.00 0.00 0.00 2.92
3388 7461 1.303155 GCAGAGGCTTGCTTGTCCT 60.303 57.895 12.44 0.00 40.89 3.85
4030 8104 7.170320 CAGTAGTAAAAAGTTCAGACGCCTTAA 59.830 37.037 0.00 0.00 0.00 1.85
4352 8427 3.120792 GTTATCGGCTAAGATGACGCAA 58.879 45.455 0.00 0.00 38.54 4.85
4863 8938 4.669206 ATTGTGCAATCTGTTTTCACCA 57.331 36.364 0.00 0.00 0.00 4.17
4941 9016 0.656259 CTGCTGCATGGAGATGAACG 59.344 55.000 19.59 0.00 36.08 3.95
4942 9017 1.022735 CCTGCTGCATGGAGATGAAC 58.977 55.000 19.59 0.00 36.08 3.18
4943 9018 0.913924 TCCTGCTGCATGGAGATGAA 59.086 50.000 19.59 0.00 36.08 2.57
4944 9019 2.611520 TCCTGCTGCATGGAGATGA 58.388 52.632 19.59 7.50 36.08 2.92
4949 9024 1.676635 GTTGCTCCTGCTGCATGGA 60.677 57.895 16.39 16.39 40.34 3.41
4950 9025 2.882876 GTTGCTCCTGCTGCATGG 59.117 61.111 1.31 7.29 40.34 3.66
4951 9026 2.483745 CGTTGCTCCTGCTGCATG 59.516 61.111 1.31 0.00 40.34 4.06
4952 9027 3.437795 GCGTTGCTCCTGCTGCAT 61.438 61.111 1.31 0.00 40.34 3.96
4967 9042 4.543736 GATGAACGAGCACGCGCG 62.544 66.667 30.96 30.96 45.49 6.86
4968 9043 3.131661 GAGATGAACGAGCACGCGC 62.132 63.158 5.73 0.00 43.96 6.86
4969 9044 2.508891 GGAGATGAACGAGCACGCG 61.509 63.158 3.53 3.53 43.96 6.01
4970 9045 0.807667 ATGGAGATGAACGAGCACGC 60.808 55.000 2.62 0.00 43.96 5.34
4971 9046 0.926155 CATGGAGATGAACGAGCACG 59.074 55.000 0.76 0.76 45.75 5.34
4972 9047 0.654683 GCATGGAGATGAACGAGCAC 59.345 55.000 0.00 0.00 0.00 4.40
4973 9048 0.249955 TGCATGGAGATGAACGAGCA 59.750 50.000 0.00 0.00 0.00 4.26
4974 9049 0.935898 CTGCATGGAGATGAACGAGC 59.064 55.000 8.85 0.00 0.00 5.03
4975 9050 0.935898 GCTGCATGGAGATGAACGAG 59.064 55.000 19.59 0.00 0.00 4.18
4976 9051 0.249955 TGCTGCATGGAGATGAACGA 59.750 50.000 19.59 0.00 0.00 3.85
5678 9753 5.593909 CCTGGCATTCATGAACCTAATAACA 59.406 40.000 11.07 1.38 0.00 2.41
6051 10171 8.628630 TCCAAAGTTACATACAATCATCAACA 57.371 30.769 0.00 0.00 0.00 3.33
6690 10844 3.633235 ACGACATCTATGCTCATCGAAC 58.367 45.455 7.44 0.00 33.88 3.95
7236 11484 8.367156 GCCCATTAAGAAATGAAATATGCCTAA 58.633 33.333 0.00 0.00 44.50 2.69
8019 12321 7.884877 TCTCATTCATGGGTTAATATTAGCCAG 59.115 37.037 24.62 15.75 45.45 4.85
8082 12387 8.823220 ATACCATTTCAAGTTAGCCAAATAGT 57.177 30.769 0.00 0.00 0.00 2.12
8119 12434 9.725019 GGATCACCTACATATATGAATTTGTCA 57.275 33.333 19.63 0.00 41.67 3.58
8159 12474 2.732016 CACGACAACCTGGTCCGA 59.268 61.111 18.54 0.00 34.24 4.55
8170 12485 2.465299 CGCAACAACACCCACGACA 61.465 57.895 0.00 0.00 0.00 4.35
8179 12494 2.293122 CTCCTCATTTTCCGCAACAACA 59.707 45.455 0.00 0.00 0.00 3.33
8213 12531 0.381801 GTACGGCATGCCCATTTCAG 59.618 55.000 30.79 16.96 0.00 3.02
8217 12535 1.037030 CAAGGTACGGCATGCCCATT 61.037 55.000 30.79 17.60 32.21 3.16
8351 12669 4.934356 TCCAGCTGATTTAAAGGAACCAT 58.066 39.130 17.39 0.00 0.00 3.55
8409 12730 3.879295 AGGAATGTGTTCTCCATAATGCG 59.121 43.478 0.00 0.00 33.83 4.73
8462 12783 2.723273 GTCGTTCTTCCCAATTCCCAT 58.277 47.619 0.00 0.00 0.00 4.00
8474 12795 4.458295 TGAATCCTAGAGTTCGTCGTTCTT 59.542 41.667 0.00 0.00 0.00 2.52
8523 12845 1.973281 ACCCAAGCAACATGCCTCG 60.973 57.895 0.00 0.00 46.52 4.63
8530 12852 2.594303 CGAGCCACCCAAGCAACA 60.594 61.111 0.00 0.00 0.00 3.33
8579 12902 1.555075 GGCACAAGTAGACCATCAGGA 59.445 52.381 0.00 0.00 38.69 3.86
8588 12911 0.617820 GGAGGGAGGGCACAAGTAGA 60.618 60.000 0.00 0.00 0.00 2.59
8592 12915 1.301293 GAAGGAGGGAGGGCACAAG 59.699 63.158 0.00 0.00 0.00 3.16
8672 12996 7.953005 TTCATTGGGCACTTGAAGAATATTA 57.047 32.000 0.00 0.00 0.00 0.98
8902 13237 5.126061 AGTTTATTCAGGTGCTTGCATAAGG 59.874 40.000 0.00 0.00 34.40 2.69
8910 13245 5.581085 GTCGTATGAGTTTATTCAGGTGCTT 59.419 40.000 0.00 0.00 0.00 3.91
8966 13301 5.512942 TCCAAGAAACCCATGATGTCTTA 57.487 39.130 0.00 0.00 0.00 2.10
9042 13377 5.198965 AGCAAGCAATGATAGGTTGAAGAT 58.801 37.500 9.03 0.00 44.78 2.40
9119 13455 4.142469 CGAGCGGGGAAATCAATAGTTTTT 60.142 41.667 0.00 0.00 0.00 1.94
9123 13459 1.485066 ACGAGCGGGGAAATCAATAGT 59.515 47.619 0.00 0.00 0.00 2.12
9160 13496 2.224769 TGTGAAGGATGGTTCCCAAGTC 60.225 50.000 0.00 0.00 43.76 3.01
9191 13527 9.412460 AGCACATCTATTCCTTCAATTATTTCA 57.588 29.630 0.00 0.00 0.00 2.69
9243 13579 0.108992 TCGATGAAAGAACCGTCCCG 60.109 55.000 0.00 0.00 0.00 5.14
9256 13592 5.353956 CAGTTGTCCAACCAAATATCGATGA 59.646 40.000 8.54 0.00 42.06 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.