Multiple sequence alignment - TraesCS3B01G449100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G449100 chr3B 100.000 4013 0 0 1 4013 689682536 689686548 0.000000e+00 7411.0
1 TraesCS3B01G449100 chr3B 98.305 59 1 0 1 59 689670631 689670689 1.970000e-18 104.0
2 TraesCS3B01G449100 chr3B 97.778 45 1 0 61 105 689670171 689670215 1.200000e-10 78.7
3 TraesCS3B01G449100 chr3D 86.541 1694 99 65 479 2101 523168477 523170112 0.000000e+00 1746.0
4 TraesCS3B01G449100 chr3D 92.821 1170 51 21 2227 3380 523170133 523171285 0.000000e+00 1664.0
5 TraesCS3B01G449100 chr3D 88.475 564 22 14 3459 4013 523171331 523171860 3.380000e-180 641.0
6 TraesCS3B01G449100 chr3D 81.723 383 37 18 114 481 523166774 523167138 5.070000e-74 289.0
7 TraesCS3B01G449100 chr3A 88.327 1225 66 37 556 1748 657942765 657943944 0.000000e+00 1399.0
8 TraesCS3B01G449100 chr3A 91.457 995 61 15 1887 2862 657944008 657944997 0.000000e+00 1345.0
9 TraesCS3B01G449100 chr3A 91.398 558 26 12 3459 4013 657945594 657946132 0.000000e+00 745.0
10 TraesCS3B01G449100 chr3A 88.054 519 27 12 2862 3380 657945065 657945548 2.080000e-162 582.0
11 TraesCS3B01G449100 chr3A 81.328 482 34 27 94 553 657936634 657937081 1.380000e-89 340.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G449100 chr3B 689682536 689686548 4012 False 7411.00 7411 100.000 1 4013 1 chr3B.!!$F1 4012
1 TraesCS3B01G449100 chr3D 523166774 523171860 5086 False 1085.00 1746 87.390 114 4013 4 chr3D.!!$F1 3899
2 TraesCS3B01G449100 chr3A 657942765 657946132 3367 False 1017.75 1399 89.809 556 4013 4 chr3A.!!$F2 3457

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
343 366 0.089516 GTACAACGAAACGGCGTACG 59.910 55.0 27.94 27.94 44.86 3.67 F
700 2087 0.322648 CGTCGTTTTTAGGGGAGGGT 59.677 55.0 0.00 0.00 0.00 4.34 F
1704 3144 0.035458 CGGGAGAGCACTCAAGGTTT 59.965 55.0 13.37 0.00 44.22 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1147 2558 0.177604 ATCACCTAGCAGCAGCAGAC 59.822 55.0 3.17 0.0 45.49 3.51 R
2566 4042 0.039617 GAGCAGATGAGACGGATCGG 60.040 60.0 0.00 0.0 0.00 4.18 R
3455 5022 0.254178 ACTGCCGCTGATGGATCTTT 59.746 50.0 4.02 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.945758 CTCTTTCAGATTGTGACAATTACTTG 57.054 34.615 12.62 8.97 33.71 3.16
27 28 9.554395 TCTTTCAGATTGTGACAATTACTTGTA 57.446 29.630 12.62 1.28 45.57 2.41
30 31 8.492673 TCAGATTGTGACAATTACTTGTATCC 57.507 34.615 12.62 0.00 45.57 2.59
31 32 8.100164 TCAGATTGTGACAATTACTTGTATCCA 58.900 33.333 12.62 0.00 45.57 3.41
32 33 8.393366 CAGATTGTGACAATTACTTGTATCCAG 58.607 37.037 12.62 0.00 45.57 3.86
33 34 8.103305 AGATTGTGACAATTACTTGTATCCAGT 58.897 33.333 12.62 0.00 45.57 4.00
34 35 9.378551 GATTGTGACAATTACTTGTATCCAGTA 57.621 33.333 12.62 0.00 45.57 2.74
35 36 9.733556 ATTGTGACAATTACTTGTATCCAGTAA 57.266 29.630 4.72 0.00 45.57 2.24
36 37 9.562408 TTGTGACAATTACTTGTATCCAGTAAA 57.438 29.630 0.00 0.00 45.57 2.01
37 38 9.733556 TGTGACAATTACTTGTATCCAGTAAAT 57.266 29.630 0.00 0.00 45.57 1.40
44 45 8.974060 TTACTTGTATCCAGTAAATTCATCCC 57.026 34.615 0.00 0.00 0.00 3.85
45 46 6.969043 ACTTGTATCCAGTAAATTCATCCCA 58.031 36.000 0.00 0.00 0.00 4.37
46 47 6.828785 ACTTGTATCCAGTAAATTCATCCCAC 59.171 38.462 0.00 0.00 0.00 4.61
47 48 6.575244 TGTATCCAGTAAATTCATCCCACT 57.425 37.500 0.00 0.00 0.00 4.00
48 49 6.356556 TGTATCCAGTAAATTCATCCCACTG 58.643 40.000 0.00 0.00 37.06 3.66
61 62 3.315765 CCACTGGGAGCGTAACAAA 57.684 52.632 0.00 0.00 35.59 2.83
62 63 1.600023 CCACTGGGAGCGTAACAAAA 58.400 50.000 0.00 0.00 35.59 2.44
63 64 1.950909 CCACTGGGAGCGTAACAAAAA 59.049 47.619 0.00 0.00 35.59 1.94
64 65 2.287368 CCACTGGGAGCGTAACAAAAAC 60.287 50.000 0.00 0.00 35.59 2.43
65 66 2.616842 CACTGGGAGCGTAACAAAAACT 59.383 45.455 0.00 0.00 0.00 2.66
66 67 3.810941 CACTGGGAGCGTAACAAAAACTA 59.189 43.478 0.00 0.00 0.00 2.24
67 68 4.454504 CACTGGGAGCGTAACAAAAACTAT 59.545 41.667 0.00 0.00 0.00 2.12
68 69 4.694037 ACTGGGAGCGTAACAAAAACTATC 59.306 41.667 0.00 0.00 0.00 2.08
69 70 4.643463 TGGGAGCGTAACAAAAACTATCA 58.357 39.130 0.00 0.00 0.00 2.15
70 71 5.064558 TGGGAGCGTAACAAAAACTATCAA 58.935 37.500 0.00 0.00 0.00 2.57
71 72 5.180492 TGGGAGCGTAACAAAAACTATCAAG 59.820 40.000 0.00 0.00 0.00 3.02
72 73 5.086727 GGAGCGTAACAAAAACTATCAAGC 58.913 41.667 0.00 0.00 0.00 4.01
73 74 5.334569 GGAGCGTAACAAAAACTATCAAGCA 60.335 40.000 0.00 0.00 0.00 3.91
74 75 6.067263 AGCGTAACAAAAACTATCAAGCAA 57.933 33.333 0.00 0.00 0.00 3.91
75 76 6.142817 AGCGTAACAAAAACTATCAAGCAAG 58.857 36.000 0.00 0.00 0.00 4.01
76 77 6.017440 AGCGTAACAAAAACTATCAAGCAAGA 60.017 34.615 0.00 0.00 0.00 3.02
77 78 6.635239 GCGTAACAAAAACTATCAAGCAAGAA 59.365 34.615 0.00 0.00 0.00 2.52
78 79 7.326063 GCGTAACAAAAACTATCAAGCAAGAAT 59.674 33.333 0.00 0.00 0.00 2.40
79 80 8.629986 CGTAACAAAAACTATCAAGCAAGAATG 58.370 33.333 0.00 0.00 0.00 2.67
80 81 9.677567 GTAACAAAAACTATCAAGCAAGAATGA 57.322 29.630 0.00 0.00 0.00 2.57
81 82 8.807667 AACAAAAACTATCAAGCAAGAATGAG 57.192 30.769 0.00 0.00 0.00 2.90
82 83 8.169977 ACAAAAACTATCAAGCAAGAATGAGA 57.830 30.769 0.00 0.00 0.00 3.27
83 84 8.632679 ACAAAAACTATCAAGCAAGAATGAGAA 58.367 29.630 0.00 0.00 0.00 2.87
84 85 8.909671 CAAAAACTATCAAGCAAGAATGAGAAC 58.090 33.333 0.00 0.00 0.00 3.01
85 86 7.750229 AAACTATCAAGCAAGAATGAGAACA 57.250 32.000 0.00 0.00 0.00 3.18
86 87 6.981762 ACTATCAAGCAAGAATGAGAACAG 57.018 37.500 0.00 0.00 0.00 3.16
87 88 4.698583 ATCAAGCAAGAATGAGAACAGC 57.301 40.909 0.00 0.00 0.00 4.40
88 89 3.479489 TCAAGCAAGAATGAGAACAGCA 58.521 40.909 0.00 0.00 0.00 4.41
89 90 4.077108 TCAAGCAAGAATGAGAACAGCAT 58.923 39.130 0.00 0.00 0.00 3.79
90 91 4.155462 TCAAGCAAGAATGAGAACAGCATC 59.845 41.667 0.00 0.00 0.00 3.91
91 92 2.676839 AGCAAGAATGAGAACAGCATCG 59.323 45.455 0.00 0.00 0.00 3.84
92 93 2.790468 GCAAGAATGAGAACAGCATCGC 60.790 50.000 0.00 0.00 0.00 4.58
93 94 2.676839 CAAGAATGAGAACAGCATCGCT 59.323 45.455 0.00 0.00 40.77 4.93
94 95 2.548875 AGAATGAGAACAGCATCGCTC 58.451 47.619 0.00 0.00 36.40 5.03
95 96 2.168106 AGAATGAGAACAGCATCGCTCT 59.832 45.455 0.00 0.00 36.40 4.09
96 97 2.687700 ATGAGAACAGCATCGCTCTT 57.312 45.000 0.00 0.00 36.40 2.85
97 98 1.718396 TGAGAACAGCATCGCTCTTG 58.282 50.000 0.00 0.00 36.40 3.02
98 99 1.273327 TGAGAACAGCATCGCTCTTGA 59.727 47.619 0.00 0.00 36.40 3.02
99 100 1.658095 GAGAACAGCATCGCTCTTGAC 59.342 52.381 0.00 0.00 36.40 3.18
100 101 0.723981 GAACAGCATCGCTCTTGACC 59.276 55.000 0.00 0.00 36.40 4.02
101 102 0.674895 AACAGCATCGCTCTTGACCC 60.675 55.000 0.00 0.00 36.40 4.46
102 103 1.817099 CAGCATCGCTCTTGACCCC 60.817 63.158 0.00 0.00 36.40 4.95
103 104 1.992277 AGCATCGCTCTTGACCCCT 60.992 57.895 0.00 0.00 30.62 4.79
104 105 1.817099 GCATCGCTCTTGACCCCTG 60.817 63.158 0.00 0.00 0.00 4.45
105 106 1.817099 CATCGCTCTTGACCCCTGC 60.817 63.158 0.00 0.00 0.00 4.85
106 107 2.293318 ATCGCTCTTGACCCCTGCA 61.293 57.895 0.00 0.00 0.00 4.41
107 108 1.841302 ATCGCTCTTGACCCCTGCAA 61.841 55.000 0.00 0.00 0.00 4.08
108 109 1.600636 CGCTCTTGACCCCTGCAAA 60.601 57.895 0.00 0.00 0.00 3.68
109 110 1.172180 CGCTCTTGACCCCTGCAAAA 61.172 55.000 0.00 0.00 0.00 2.44
110 111 1.039856 GCTCTTGACCCCTGCAAAAA 58.960 50.000 0.00 0.00 0.00 1.94
111 112 1.000171 GCTCTTGACCCCTGCAAAAAG 60.000 52.381 0.00 0.00 0.00 2.27
112 113 1.615392 CTCTTGACCCCTGCAAAAAGG 59.385 52.381 0.00 0.00 37.05 3.11
118 119 1.138069 ACCCCTGCAAAAAGGAAAACG 59.862 47.619 0.00 0.00 40.02 3.60
143 144 1.135228 GCTTGACAAAACCACCAACGT 60.135 47.619 0.00 0.00 0.00 3.99
147 148 0.377905 ACAAAACCACCAACGTACGC 59.622 50.000 16.72 0.00 0.00 4.42
149 150 1.774046 AAAACCACCAACGTACGCCG 61.774 55.000 16.72 6.34 44.03 6.46
173 174 2.256591 CGCACCTGCTTGACTGCTT 61.257 57.895 0.00 0.00 39.32 3.91
176 177 0.313043 CACCTGCTTGACTGCTTTGG 59.687 55.000 0.00 0.00 0.00 3.28
260 268 2.070399 TAACGGAAAAGGCCTGGGCA 62.070 55.000 23.25 0.00 44.11 5.36
335 358 2.394545 GGTGCAAGGTACAACGAAAC 57.605 50.000 0.00 0.00 0.00 2.78
336 359 1.333435 GGTGCAAGGTACAACGAAACG 60.333 52.381 0.00 0.00 0.00 3.60
337 360 0.938713 TGCAAGGTACAACGAAACGG 59.061 50.000 0.00 0.00 0.00 4.44
341 364 0.313672 AGGTACAACGAAACGGCGTA 59.686 50.000 15.20 0.00 44.86 4.42
342 365 0.434628 GGTACAACGAAACGGCGTAC 59.565 55.000 15.20 10.14 44.86 3.67
343 366 0.089516 GTACAACGAAACGGCGTACG 59.910 55.000 27.94 27.94 44.86 3.67
360 383 2.877582 GCACGTAACGCGACCGAT 60.878 61.111 15.93 0.00 44.77 4.18
361 384 2.984466 CACGTAACGCGACCGATG 59.016 61.111 15.93 8.71 44.77 3.84
362 385 2.877582 ACGTAACGCGACCGATGC 60.878 61.111 15.93 0.00 44.77 3.91
363 386 2.578713 CGTAACGCGACCGATGCT 60.579 61.111 15.93 0.00 44.77 3.79
364 387 2.156446 CGTAACGCGACCGATGCTT 61.156 57.895 15.93 0.00 44.77 3.91
370 393 3.972803 CGACCGATGCTTACGCGC 61.973 66.667 5.73 0.00 39.65 6.86
371 394 3.972803 GACCGATGCTTACGCGCG 61.973 66.667 30.96 30.96 39.65 6.86
379 402 3.925238 CTTACGCGCGCCATGGTC 61.925 66.667 32.58 4.79 0.00 4.02
436 459 4.363990 AGGCTCCGTCACGTGCTG 62.364 66.667 11.67 5.20 0.00 4.41
461 486 1.745890 CCCGGGCACTCGATCATTA 59.254 57.895 8.08 0.00 0.00 1.90
498 1865 6.096564 ACCGGTAAACCACTTTTTATCAACAA 59.903 34.615 4.49 0.00 35.14 2.83
500 1867 7.654116 CCGGTAAACCACTTTTTATCAACAAAT 59.346 33.333 0.00 0.00 35.14 2.32
501 1868 8.484008 CGGTAAACCACTTTTTATCAACAAATG 58.516 33.333 0.00 0.00 35.14 2.32
502 1869 8.279800 GGTAAACCACTTTTTATCAACAAATGC 58.720 33.333 0.00 0.00 35.64 3.56
503 1870 7.856145 AAACCACTTTTTATCAACAAATGCA 57.144 28.000 0.00 0.00 0.00 3.96
504 1871 8.449251 AAACCACTTTTTATCAACAAATGCAT 57.551 26.923 0.00 0.00 0.00 3.96
505 1872 7.656707 ACCACTTTTTATCAACAAATGCATC 57.343 32.000 0.00 0.00 0.00 3.91
506 1873 7.215789 ACCACTTTTTATCAACAAATGCATCA 58.784 30.769 0.00 0.00 0.00 3.07
507 1874 7.385752 ACCACTTTTTATCAACAAATGCATCAG 59.614 33.333 0.00 0.00 0.00 2.90
508 1875 7.385752 CCACTTTTTATCAACAAATGCATCAGT 59.614 33.333 0.00 0.00 0.00 3.41
509 1876 8.767085 CACTTTTTATCAACAAATGCATCAGTT 58.233 29.630 0.00 5.21 0.00 3.16
510 1877 8.767085 ACTTTTTATCAACAAATGCATCAGTTG 58.233 29.630 26.23 26.23 43.69 3.16
529 1898 1.810755 TGACACTACTAGCCAGACACG 59.189 52.381 0.00 0.00 0.00 4.49
554 1923 7.201732 CGGAAGAGCATCAGGTGTAAATAAATT 60.202 37.037 0.00 0.00 37.82 1.82
566 1940 9.763465 AGGTGTAAATAAATTAAATGACGTTCG 57.237 29.630 0.00 0.00 0.00 3.95
622 2004 5.992217 GGAGGAGCATCACGTTTAATAAGAT 59.008 40.000 0.00 0.00 36.25 2.40
666 2048 4.060205 GCCACTTGCAGTTTGATTTGATT 58.940 39.130 0.00 0.00 40.77 2.57
673 2055 8.895737 ACTTGCAGTTTGATTTGATTTGATTTT 58.104 25.926 0.00 0.00 0.00 1.82
677 2064 7.322699 GCAGTTTGATTTGATTTGATTTTGCAG 59.677 33.333 0.00 0.00 0.00 4.41
681 2068 7.887996 TGATTTGATTTGATTTTGCAGGTAC 57.112 32.000 0.00 0.00 0.00 3.34
700 2087 0.322648 CGTCGTTTTTAGGGGAGGGT 59.677 55.000 0.00 0.00 0.00 4.34
772 2168 1.517832 GCCGACTCTAGTGGTGCAT 59.482 57.895 0.00 0.00 0.00 3.96
821 2217 5.945191 TGCATGATCATCACAAGACCTTTAA 59.055 36.000 4.86 0.00 0.00 1.52
860 2260 4.344978 TCTGTCTATATATCTGGGCGCTT 58.655 43.478 7.64 0.00 0.00 4.68
873 2273 1.532868 GGGCGCTTATATGAGCTGTTG 59.467 52.381 16.55 3.26 40.52 3.33
874 2274 1.532868 GGCGCTTATATGAGCTGTTGG 59.467 52.381 16.55 2.92 40.52 3.77
875 2275 1.532868 GCGCTTATATGAGCTGTTGGG 59.467 52.381 16.55 2.26 40.52 4.12
876 2276 1.532868 CGCTTATATGAGCTGTTGGGC 59.467 52.381 16.55 0.00 40.52 5.36
898 2298 0.393077 CCATATCCTTCGCCGGTTCT 59.607 55.000 1.90 0.00 0.00 3.01
900 2300 0.680061 ATATCCTTCGCCGGTTCTCC 59.320 55.000 1.90 0.00 0.00 3.71
917 2317 3.085947 CTCCTGCCTGCCTGCCTA 61.086 66.667 0.00 0.00 0.00 3.93
918 2318 3.085947 TCCTGCCTGCCTGCCTAG 61.086 66.667 0.00 0.00 0.00 3.02
942 2343 3.303791 GGTTCGTTCAAACAGATTCGCTT 60.304 43.478 0.00 0.00 0.00 4.68
977 2382 3.121445 CGACGTAGCAGAAAAAGAGAACC 59.879 47.826 0.00 0.00 0.00 3.62
983 2388 4.640364 AGCAGAAAAAGAGAACCAGAGAG 58.360 43.478 0.00 0.00 0.00 3.20
984 2389 3.750652 GCAGAAAAAGAGAACCAGAGAGG 59.249 47.826 0.00 0.00 45.67 3.69
1080 2488 4.373116 AGCAGCGGGTACACCACG 62.373 66.667 0.00 3.12 40.22 4.94
1128 2539 1.449418 GGTTCGTCGTGTAAACGTCAG 59.551 52.381 5.14 0.00 40.86 3.51
1130 2541 2.022808 TCGTCGTGTAAACGTCAGTC 57.977 50.000 5.14 0.00 40.86 3.51
1131 2542 1.599071 TCGTCGTGTAAACGTCAGTCT 59.401 47.619 5.14 0.00 40.86 3.24
1133 2544 3.247411 TCGTCGTGTAAACGTCAGTCTTA 59.753 43.478 5.14 0.00 40.86 2.10
1134 2545 3.968096 CGTCGTGTAAACGTCAGTCTTAA 59.032 43.478 5.14 0.00 35.47 1.85
1137 2548 6.345250 CGTCGTGTAAACGTCAGTCTTAAATT 60.345 38.462 5.14 0.00 35.47 1.82
1138 2549 6.784227 GTCGTGTAAACGTCAGTCTTAAATTG 59.216 38.462 5.14 0.00 0.00 2.32
1139 2550 6.476380 TCGTGTAAACGTCAGTCTTAAATTGT 59.524 34.615 5.14 0.00 0.00 2.71
1140 2551 7.647318 TCGTGTAAACGTCAGTCTTAAATTGTA 59.353 33.333 5.14 0.00 0.00 2.41
1141 2552 7.943065 CGTGTAAACGTCAGTCTTAAATTGTAG 59.057 37.037 0.00 0.00 0.00 2.74
1142 2553 8.758715 GTGTAAACGTCAGTCTTAAATTGTAGT 58.241 33.333 0.00 0.00 0.00 2.73
1143 2554 9.964303 TGTAAACGTCAGTCTTAAATTGTAGTA 57.036 29.630 0.00 0.00 0.00 1.82
1145 2556 7.558435 AACGTCAGTCTTAAATTGTAGTACG 57.442 36.000 0.00 0.00 0.00 3.67
1146 2557 6.672147 ACGTCAGTCTTAAATTGTAGTACGT 58.328 36.000 0.00 0.00 34.25 3.57
1147 2558 6.580041 ACGTCAGTCTTAAATTGTAGTACGTG 59.420 38.462 0.00 0.00 37.31 4.49
1149 2560 7.201215 CGTCAGTCTTAAATTGTAGTACGTGTC 60.201 40.741 0.00 0.00 0.00 3.67
1150 2561 7.806960 GTCAGTCTTAAATTGTAGTACGTGTCT 59.193 37.037 0.00 0.00 0.00 3.41
1151 2562 7.806487 TCAGTCTTAAATTGTAGTACGTGTCTG 59.194 37.037 0.00 0.00 0.00 3.51
1152 2563 6.585322 AGTCTTAAATTGTAGTACGTGTCTGC 59.415 38.462 0.00 0.78 0.00 4.26
1153 2564 6.585322 GTCTTAAATTGTAGTACGTGTCTGCT 59.415 38.462 0.00 0.00 0.00 4.24
1154 2565 6.584942 TCTTAAATTGTAGTACGTGTCTGCTG 59.415 38.462 0.00 0.00 0.00 4.41
1155 2566 2.060326 TTGTAGTACGTGTCTGCTGC 57.940 50.000 0.00 0.00 0.00 5.25
1157 2568 1.068541 TGTAGTACGTGTCTGCTGCTG 60.069 52.381 0.00 0.00 0.00 4.41
1158 2569 0.109272 TAGTACGTGTCTGCTGCTGC 60.109 55.000 8.89 8.89 40.20 5.25
1159 2570 1.373497 GTACGTGTCTGCTGCTGCT 60.373 57.895 17.00 0.00 40.48 4.24
1160 2571 0.109272 GTACGTGTCTGCTGCTGCTA 60.109 55.000 17.00 2.17 40.48 3.49
1161 2572 0.171231 TACGTGTCTGCTGCTGCTAG 59.829 55.000 17.00 11.94 40.48 3.42
1163 2574 1.294780 GTGTCTGCTGCTGCTAGGT 59.705 57.895 17.00 0.00 40.48 3.08
1164 2575 1.018226 GTGTCTGCTGCTGCTAGGTG 61.018 60.000 17.00 2.59 40.48 4.00
1165 2576 1.187567 TGTCTGCTGCTGCTAGGTGA 61.188 55.000 17.00 4.76 40.48 4.02
1166 2577 0.177604 GTCTGCTGCTGCTAGGTGAT 59.822 55.000 17.00 0.00 40.48 3.06
1167 2578 0.907486 TCTGCTGCTGCTAGGTGATT 59.093 50.000 17.00 0.00 40.48 2.57
1168 2579 1.015109 CTGCTGCTGCTAGGTGATTG 58.985 55.000 17.00 0.00 40.48 2.67
1169 2580 1.028330 TGCTGCTGCTAGGTGATTGC 61.028 55.000 17.00 0.00 40.48 3.56
1170 2581 0.747283 GCTGCTGCTAGGTGATTGCT 60.747 55.000 8.53 0.00 36.03 3.91
1171 2582 1.015109 CTGCTGCTAGGTGATTGCTG 58.985 55.000 0.00 0.00 0.00 4.41
1172 2583 0.614812 TGCTGCTAGGTGATTGCTGA 59.385 50.000 0.00 0.00 31.85 4.26
1173 2584 1.211212 TGCTGCTAGGTGATTGCTGAT 59.789 47.619 0.00 0.00 31.85 2.90
1174 2585 2.295885 GCTGCTAGGTGATTGCTGATT 58.704 47.619 0.00 0.00 31.85 2.57
1175 2586 3.118298 TGCTGCTAGGTGATTGCTGATTA 60.118 43.478 0.00 0.00 31.85 1.75
1176 2587 3.879295 GCTGCTAGGTGATTGCTGATTAA 59.121 43.478 0.00 0.00 31.85 1.40
1177 2588 4.260948 GCTGCTAGGTGATTGCTGATTAAC 60.261 45.833 0.00 0.00 31.85 2.01
1178 2589 4.199310 TGCTAGGTGATTGCTGATTAACC 58.801 43.478 0.00 0.00 0.00 2.85
1179 2590 4.080356 TGCTAGGTGATTGCTGATTAACCT 60.080 41.667 0.00 0.00 38.20 3.50
1180 2591 4.513318 GCTAGGTGATTGCTGATTAACCTC 59.487 45.833 10.22 0.00 36.79 3.85
1181 2592 3.535561 AGGTGATTGCTGATTAACCTCG 58.464 45.455 0.00 0.00 32.50 4.63
1182 2593 3.197766 AGGTGATTGCTGATTAACCTCGA 59.802 43.478 0.00 0.00 32.50 4.04
1183 2594 3.557595 GGTGATTGCTGATTAACCTCGAG 59.442 47.826 5.13 5.13 0.00 4.04
1184 2595 4.433615 GTGATTGCTGATTAACCTCGAGA 58.566 43.478 15.71 0.00 0.00 4.04
1185 2596 5.053145 GTGATTGCTGATTAACCTCGAGAT 58.947 41.667 15.71 4.86 0.00 2.75
1186 2597 5.050499 GTGATTGCTGATTAACCTCGAGATG 60.050 44.000 15.71 0.00 0.00 2.90
1187 2598 2.826428 TGCTGATTAACCTCGAGATGC 58.174 47.619 15.71 6.50 0.00 3.91
1188 2599 2.168313 TGCTGATTAACCTCGAGATGCA 59.832 45.455 15.71 8.93 0.00 3.96
1189 2600 3.181462 TGCTGATTAACCTCGAGATGCAT 60.181 43.478 15.71 0.00 0.00 3.96
1190 2601 3.186001 GCTGATTAACCTCGAGATGCATG 59.814 47.826 15.71 0.00 0.00 4.06
1281 2700 1.077716 GGGGTTCAACTGCGCCTAT 60.078 57.895 4.18 0.00 35.20 2.57
1511 2943 1.948145 GCGTTCTAGCTAGGCTGACTA 59.052 52.381 20.58 0.00 40.10 2.59
1704 3144 0.035458 CGGGAGAGCACTCAAGGTTT 59.965 55.000 13.37 0.00 44.22 3.27
1708 3148 2.038557 GGAGAGCACTCAAGGTTTACCA 59.961 50.000 13.37 0.00 44.22 3.25
1709 3149 3.067833 GAGAGCACTCAAGGTTTACCAC 58.932 50.000 6.25 0.00 42.21 4.16
1710 3150 2.706190 AGAGCACTCAAGGTTTACCACT 59.294 45.455 1.13 0.00 38.89 4.00
1711 3151 3.067833 GAGCACTCAAGGTTTACCACTC 58.932 50.000 1.13 0.00 38.89 3.51
1739 3179 6.121776 TCGGCCATCACCACTTTATAATAT 57.878 37.500 2.24 0.00 0.00 1.28
1744 3184 9.476202 GGCCATCACCACTTTATAATATTTTTC 57.524 33.333 0.00 0.00 0.00 2.29
1770 3210 9.307121 CTCTCAATACAAACTTCATACTACTGG 57.693 37.037 0.00 0.00 0.00 4.00
1771 3211 8.812972 TCTCAATACAAACTTCATACTACTGGT 58.187 33.333 0.00 0.00 0.00 4.00
1793 3233 9.607988 CTGGTAGTAATATTTCCATACACACAA 57.392 33.333 0.00 0.00 0.00 3.33
1794 3234 9.386010 TGGTAGTAATATTTCCATACACACAAC 57.614 33.333 0.00 0.00 0.00 3.32
1797 3237 7.985476 AGTAATATTTCCATACACACAACAGC 58.015 34.615 0.00 0.00 0.00 4.40
1800 3240 4.502171 TTTCCATACACACAACAGCATG 57.498 40.909 0.00 0.00 46.00 4.06
1801 3241 3.415457 TCCATACACACAACAGCATGA 57.585 42.857 0.00 0.00 39.69 3.07
1803 3243 4.334552 TCCATACACACAACAGCATGATT 58.665 39.130 0.00 0.00 39.69 2.57
1807 3268 6.693978 CCATACACACAACAGCATGATTATTG 59.306 38.462 0.00 0.00 39.69 1.90
1866 3329 6.673154 ACTTGCACGATTAACTAATAACCC 57.327 37.500 0.00 0.00 0.00 4.11
1867 3330 5.292589 ACTTGCACGATTAACTAATAACCCG 59.707 40.000 0.00 0.00 0.00 5.28
1879 3342 0.734942 ATAACCCGAGTCAACGTGCG 60.735 55.000 0.00 0.00 0.00 5.34
1880 3343 2.074230 TAACCCGAGTCAACGTGCGT 62.074 55.000 0.00 0.00 0.00 5.24
1881 3344 3.103911 CCCGAGTCAACGTGCGTC 61.104 66.667 0.00 0.00 0.00 5.19
1882 3345 3.458579 CCGAGTCAACGTGCGTCG 61.459 66.667 0.00 0.00 46.00 5.12
1903 3366 3.378042 CGTGCGTGCGTTGCTTTG 61.378 61.111 0.00 0.00 0.00 2.77
1969 3436 3.499737 CAGTGGTTCATCGCCGCC 61.500 66.667 0.00 0.00 37.22 6.13
2131 3598 2.433491 GTGGTGACCACGCGCATA 60.433 61.111 20.19 0.00 44.95 3.14
2132 3599 1.813753 GTGGTGACCACGCGCATAT 60.814 57.895 20.19 0.00 44.95 1.78
2133 3600 0.528901 GTGGTGACCACGCGCATATA 60.529 55.000 20.19 0.00 44.95 0.86
2146 3619 2.334971 GCATATATTGCGTGCATGCA 57.665 45.000 29.30 29.30 42.54 3.96
2147 3620 2.871133 GCATATATTGCGTGCATGCAT 58.129 42.857 32.76 23.32 45.78 3.96
2148 3621 3.247442 GCATATATTGCGTGCATGCATT 58.753 40.909 32.76 29.13 45.78 3.56
2150 3623 4.201551 GCATATATTGCGTGCATGCATTTC 60.202 41.667 32.76 15.81 45.78 2.17
2153 3626 2.081725 TTGCGTGCATGCATTTCATT 57.918 40.000 32.76 0.00 45.78 2.57
2156 3629 1.470285 GCGTGCATGCATTTCATTCCT 60.470 47.619 25.64 0.00 31.79 3.36
2160 3633 3.305094 GTGCATGCATTTCATTCCTTTCG 59.695 43.478 25.64 0.00 31.79 3.46
2162 3635 3.549070 GCATGCATTTCATTCCTTTCGAC 59.451 43.478 14.21 0.00 31.79 4.20
2163 3636 4.735985 CATGCATTTCATTCCTTTCGACA 58.264 39.130 0.00 0.00 31.79 4.35
2166 3639 3.419915 CATTTCATTCCTTTCGACAGCG 58.580 45.455 0.00 0.00 39.35 5.18
2182 3655 3.816524 CGAGAGCTCGCCGAGGTT 61.817 66.667 20.80 10.20 46.50 3.50
2194 3667 1.802365 GCCGAGGTTGTTGTAACGAAT 59.198 47.619 0.00 0.00 0.00 3.34
2197 3670 3.249080 CCGAGGTTGTTGTAACGAATTGT 59.751 43.478 0.00 0.00 0.00 2.71
2200 3673 5.050904 CGAGGTTGTTGTAACGAATTGTGTA 60.051 40.000 0.00 0.00 0.00 2.90
2204 3677 5.068253 TGTTGTAACGAATTGTGTACGTG 57.932 39.130 0.00 0.00 40.10 4.49
2207 3680 1.489574 AACGAATTGTGTACGTGCGA 58.510 45.000 0.00 0.00 40.10 5.10
2212 3685 2.953466 ATTGTGTACGTGCGATAGGT 57.047 45.000 0.00 0.00 0.00 3.08
2213 3686 2.267188 TTGTGTACGTGCGATAGGTC 57.733 50.000 0.00 0.00 0.00 3.85
2265 3741 3.069318 GACGGAGGCGGAGAAGGT 61.069 66.667 0.00 0.00 0.00 3.50
2281 3757 4.683334 GTGTTCAACGCGCTGGGC 62.683 66.667 5.73 6.64 38.69 5.36
2568 4044 1.205064 ACGTACGTGAACTCGACCG 59.795 57.895 22.14 6.93 35.27 4.79
2569 4045 1.221466 ACGTACGTGAACTCGACCGA 61.221 55.000 22.14 0.00 34.17 4.69
2572 4048 0.729116 TACGTGAACTCGACCGATCC 59.271 55.000 0.00 0.00 34.70 3.36
2573 4049 1.582937 CGTGAACTCGACCGATCCG 60.583 63.158 0.00 0.00 0.00 4.18
2574 4050 1.505353 GTGAACTCGACCGATCCGT 59.495 57.895 0.00 0.00 0.00 4.69
2575 4051 0.522915 GTGAACTCGACCGATCCGTC 60.523 60.000 4.31 4.31 0.00 4.79
2576 4052 0.675837 TGAACTCGACCGATCCGTCT 60.676 55.000 11.61 0.00 0.00 4.18
2577 4053 0.027848 GAACTCGACCGATCCGTCTC 59.972 60.000 11.61 0.32 0.00 3.36
2578 4054 0.675837 AACTCGACCGATCCGTCTCA 60.676 55.000 11.61 0.00 0.00 3.27
2580 4056 0.236187 CTCGACCGATCCGTCTCATC 59.764 60.000 11.61 0.00 0.00 2.92
2581 4057 0.179054 TCGACCGATCCGTCTCATCT 60.179 55.000 11.61 0.00 0.00 2.90
2582 4058 0.040870 CGACCGATCCGTCTCATCTG 60.041 60.000 11.61 0.00 0.00 2.90
2583 4059 0.318275 GACCGATCCGTCTCATCTGC 60.318 60.000 6.92 0.00 0.00 4.26
2584 4060 0.753479 ACCGATCCGTCTCATCTGCT 60.753 55.000 0.00 0.00 0.00 4.24
2585 4061 0.039617 CCGATCCGTCTCATCTGCTC 60.040 60.000 0.00 0.00 0.00 4.26
2586 4062 0.665298 CGATCCGTCTCATCTGCTCA 59.335 55.000 0.00 0.00 0.00 4.26
2588 4064 2.288091 CGATCCGTCTCATCTGCTCAAT 60.288 50.000 0.00 0.00 0.00 2.57
2589 4065 2.879002 TCCGTCTCATCTGCTCAATC 57.121 50.000 0.00 0.00 0.00 2.67
2591 4067 3.555966 TCCGTCTCATCTGCTCAATCTA 58.444 45.455 0.00 0.00 0.00 1.98
2592 4068 3.316588 TCCGTCTCATCTGCTCAATCTAC 59.683 47.826 0.00 0.00 0.00 2.59
2593 4069 3.067320 CCGTCTCATCTGCTCAATCTACA 59.933 47.826 0.00 0.00 0.00 2.74
2594 4070 4.261952 CCGTCTCATCTGCTCAATCTACAT 60.262 45.833 0.00 0.00 0.00 2.29
2595 4071 4.680567 CGTCTCATCTGCTCAATCTACATG 59.319 45.833 0.00 0.00 0.00 3.21
2596 4072 5.506982 CGTCTCATCTGCTCAATCTACATGA 60.507 44.000 0.00 0.00 0.00 3.07
2597 4073 5.691305 GTCTCATCTGCTCAATCTACATGAC 59.309 44.000 0.00 0.00 0.00 3.06
2598 4074 5.597594 TCTCATCTGCTCAATCTACATGACT 59.402 40.000 0.00 0.00 0.00 3.41
2599 4075 6.774656 TCTCATCTGCTCAATCTACATGACTA 59.225 38.462 0.00 0.00 0.00 2.59
2602 4078 6.721704 TCTGCTCAATCTACATGACTACAT 57.278 37.500 0.00 0.00 37.19 2.29
2603 4079 7.823745 TCTGCTCAATCTACATGACTACATA 57.176 36.000 0.00 0.00 35.09 2.29
2604 4080 7.880105 TCTGCTCAATCTACATGACTACATAG 58.120 38.462 0.00 0.00 35.09 2.23
2605 4081 6.986250 TGCTCAATCTACATGACTACATAGG 58.014 40.000 0.00 0.00 35.09 2.57
2606 4082 6.551227 TGCTCAATCTACATGACTACATAGGT 59.449 38.462 0.00 0.00 35.09 3.08
2607 4083 7.724061 TGCTCAATCTACATGACTACATAGGTA 59.276 37.037 0.00 0.00 35.09 3.08
2612 4088 7.870509 TCTACATGACTACATAGGTAACGTT 57.129 36.000 5.88 5.88 36.61 3.99
2613 4089 7.700505 TCTACATGACTACATAGGTAACGTTG 58.299 38.462 11.99 0.00 36.61 4.10
2614 4090 5.657474 ACATGACTACATAGGTAACGTTGG 58.343 41.667 11.99 0.00 36.61 3.77
2623 4108 2.985896 AGGTAACGTTGGTGATGATGG 58.014 47.619 11.99 0.00 46.39 3.51
2719 4204 2.399611 GCTACAACATGACGCGCC 59.600 61.111 5.73 0.00 0.00 6.53
2721 4206 3.420222 CTACAACATGACGCGCCGC 62.420 63.158 5.73 0.00 0.00 6.53
2854 4339 1.565288 TCATGTTCCCCAGCATGATCA 59.435 47.619 0.00 0.00 44.29 2.92
3092 4646 7.307694 CAACCGTGACATAACAGTACTACTAA 58.692 38.462 0.00 0.00 0.00 2.24
3106 4660 6.550108 CAGTACTACTAATACCACCACCAGAT 59.450 42.308 0.00 0.00 0.00 2.90
3171 4727 5.775686 ACGTGACACTAAAATAGCAGTACA 58.224 37.500 3.68 0.00 0.00 2.90
3176 4732 9.314321 GTGACACTAAAATAGCAGTACACATAT 57.686 33.333 0.00 0.00 34.42 1.78
3246 4810 2.786578 GCAACTTGCATTTCGAAACGAA 59.213 40.909 13.81 0.00 44.26 3.85
3247 4811 3.241784 GCAACTTGCATTTCGAAACGAAA 59.758 39.130 13.81 18.71 46.56 3.46
3248 4812 4.259610 GCAACTTGCATTTCGAAACGAAAA 60.260 37.500 13.81 2.67 46.19 2.29
3249 4813 6.268098 GCAACTTGCATTTCGAAACGAAAAC 61.268 40.000 13.81 15.81 46.19 2.43
3380 4947 0.110644 GAAACGGCAGCTCAAGAACG 60.111 55.000 0.00 0.00 0.00 3.95
3382 4949 0.531974 AACGGCAGCTCAAGAACGAA 60.532 50.000 0.00 0.00 0.00 3.85
3383 4950 0.320771 ACGGCAGCTCAAGAACGAAT 60.321 50.000 0.00 0.00 0.00 3.34
3384 4951 0.798776 CGGCAGCTCAAGAACGAATT 59.201 50.000 0.00 0.00 0.00 2.17
3385 4952 1.201965 CGGCAGCTCAAGAACGAATTC 60.202 52.381 0.00 0.00 34.78 2.17
3387 4954 2.095053 GGCAGCTCAAGAACGAATTCTC 59.905 50.000 3.52 0.00 44.82 2.87
3388 4955 2.999355 GCAGCTCAAGAACGAATTCTCT 59.001 45.455 3.52 0.00 44.82 3.10
3389 4956 4.177026 GCAGCTCAAGAACGAATTCTCTA 58.823 43.478 3.52 0.00 44.82 2.43
3390 4957 4.627467 GCAGCTCAAGAACGAATTCTCTAA 59.373 41.667 3.52 0.00 44.82 2.10
3391 4958 5.445275 GCAGCTCAAGAACGAATTCTCTAAC 60.445 44.000 3.52 0.00 44.82 2.34
3392 4959 5.062809 CAGCTCAAGAACGAATTCTCTAACC 59.937 44.000 3.52 0.00 44.82 2.85
3393 4960 4.330347 GCTCAAGAACGAATTCTCTAACCC 59.670 45.833 3.52 0.00 44.82 4.11
3394 4961 5.725362 CTCAAGAACGAATTCTCTAACCCT 58.275 41.667 3.52 0.00 44.82 4.34
3395 4962 5.721232 TCAAGAACGAATTCTCTAACCCTC 58.279 41.667 3.52 0.00 44.82 4.30
3396 4963 4.373348 AGAACGAATTCTCTAACCCTCG 57.627 45.455 3.52 0.00 41.63 4.63
3397 4964 4.015084 AGAACGAATTCTCTAACCCTCGA 58.985 43.478 3.52 0.00 41.63 4.04
3398 4965 4.096682 AGAACGAATTCTCTAACCCTCGAG 59.903 45.833 5.13 5.13 41.63 4.04
3399 4966 3.354467 ACGAATTCTCTAACCCTCGAGT 58.646 45.455 12.31 0.00 0.00 4.18
3400 4967 3.377798 ACGAATTCTCTAACCCTCGAGTC 59.622 47.826 12.31 0.00 0.00 3.36
3401 4968 3.377485 CGAATTCTCTAACCCTCGAGTCA 59.623 47.826 12.31 0.00 0.00 3.41
3402 4969 4.496673 CGAATTCTCTAACCCTCGAGTCAG 60.497 50.000 12.31 2.12 0.00 3.51
3403 4970 3.715638 TTCTCTAACCCTCGAGTCAGA 57.284 47.619 12.31 6.97 0.00 3.27
3404 4971 3.935818 TCTCTAACCCTCGAGTCAGAT 57.064 47.619 12.31 0.00 0.00 2.90
3405 4972 3.811083 TCTCTAACCCTCGAGTCAGATC 58.189 50.000 12.31 0.00 0.00 2.75
3406 4973 3.200165 TCTCTAACCCTCGAGTCAGATCA 59.800 47.826 12.31 0.00 0.00 2.92
3407 4974 3.280295 TCTAACCCTCGAGTCAGATCAC 58.720 50.000 12.31 0.00 0.00 3.06
3408 4975 1.924731 AACCCTCGAGTCAGATCACA 58.075 50.000 12.31 0.00 0.00 3.58
3409 4976 1.178276 ACCCTCGAGTCAGATCACAC 58.822 55.000 12.31 0.00 0.00 3.82
3410 4977 1.177401 CCCTCGAGTCAGATCACACA 58.823 55.000 12.31 0.00 0.00 3.72
3411 4978 1.753649 CCCTCGAGTCAGATCACACAT 59.246 52.381 12.31 0.00 0.00 3.21
3412 4979 2.223688 CCCTCGAGTCAGATCACACATC 60.224 54.545 12.31 0.00 0.00 3.06
3426 4993 6.499699 AGATCACACATCCATCCATATGTACT 59.500 38.462 1.24 0.00 34.61 2.73
3428 4995 5.602145 TCACACATCCATCCATATGTACTCA 59.398 40.000 1.24 0.00 34.61 3.41
3429 4996 5.698089 CACACATCCATCCATATGTACTCAC 59.302 44.000 1.24 0.00 34.61 3.51
3430 4997 4.925646 CACATCCATCCATATGTACTCACG 59.074 45.833 1.24 0.00 34.61 4.35
3431 4998 4.588951 ACATCCATCCATATGTACTCACGT 59.411 41.667 1.24 0.00 34.61 4.49
3432 4999 5.070446 ACATCCATCCATATGTACTCACGTT 59.930 40.000 1.24 0.00 34.61 3.99
3433 5000 4.944048 TCCATCCATATGTACTCACGTTG 58.056 43.478 1.24 0.00 0.00 4.10
3434 5001 3.494626 CCATCCATATGTACTCACGTTGC 59.505 47.826 1.24 0.00 0.00 4.17
3435 5002 3.878160 TCCATATGTACTCACGTTGCA 57.122 42.857 1.24 0.00 0.00 4.08
3455 5022 2.411628 ACTTGCAAGTACCACACACA 57.588 45.000 30.25 0.00 37.52 3.72
3456 5023 2.717390 ACTTGCAAGTACCACACACAA 58.283 42.857 30.25 0.00 37.52 3.33
3457 5024 3.085533 ACTTGCAAGTACCACACACAAA 58.914 40.909 30.25 0.00 37.52 2.83
3469 5042 2.079158 ACACACAAAGATCCATCAGCG 58.921 47.619 0.00 0.00 0.00 5.18
3485 5058 0.586802 AGCGGCAGTTTCTCGTTTTC 59.413 50.000 1.45 0.00 0.00 2.29
3486 5059 0.586802 GCGGCAGTTTCTCGTTTTCT 59.413 50.000 0.00 0.00 0.00 2.52
3488 5061 2.540973 GCGGCAGTTTCTCGTTTTCTTT 60.541 45.455 0.00 0.00 0.00 2.52
3490 5063 3.724257 CGGCAGTTTCTCGTTTTCTTTTC 59.276 43.478 0.00 0.00 0.00 2.29
3491 5064 4.668289 GGCAGTTTCTCGTTTTCTTTTCA 58.332 39.130 0.00 0.00 0.00 2.69
3495 5068 7.330318 GCAGTTTCTCGTTTTCTTTTCATTTC 58.670 34.615 0.00 0.00 0.00 2.17
3578 5156 2.025037 TGGAGTTTGGATCATTCCTGGG 60.025 50.000 0.00 0.00 43.07 4.45
3625 5203 2.125512 CTCCCGTCTTTGGAGCGG 60.126 66.667 0.00 0.00 42.75 5.52
3626 5204 4.388499 TCCCGTCTTTGGAGCGGC 62.388 66.667 0.00 0.00 39.59 6.53
3657 5235 2.343758 GCCCTGCAGAACTCGACA 59.656 61.111 17.39 0.00 0.00 4.35
3663 5241 0.744281 TGCAGAACTCGACACAGACA 59.256 50.000 0.00 0.00 0.00 3.41
3664 5242 1.132588 GCAGAACTCGACACAGACAC 58.867 55.000 0.00 0.00 0.00 3.67
3665 5243 1.536072 GCAGAACTCGACACAGACACA 60.536 52.381 0.00 0.00 0.00 3.72
3666 5244 2.389059 CAGAACTCGACACAGACACAG 58.611 52.381 0.00 0.00 0.00 3.66
3667 5245 2.033424 CAGAACTCGACACAGACACAGA 59.967 50.000 0.00 0.00 0.00 3.41
3668 5246 2.033550 AGAACTCGACACAGACACAGAC 59.966 50.000 0.00 0.00 0.00 3.51
3715 5293 0.250081 GATCGAGCCCTTCATGGACC 60.250 60.000 0.00 0.00 38.35 4.46
3720 5298 3.036429 GCCCTTCATGGACCGAGCT 62.036 63.158 0.00 0.00 38.35 4.09
3740 5318 2.519771 TTGGAGAGCTTGCAATCCAT 57.480 45.000 17.91 0.00 41.33 3.41
3741 5319 2.048444 TGGAGAGCTTGCAATCCATC 57.952 50.000 14.20 4.89 36.92 3.51
3742 5320 0.942962 GGAGAGCTTGCAATCCATCG 59.057 55.000 11.20 0.00 0.00 3.84
3762 5340 2.357517 GTCCAGTGTGACGCAGGG 60.358 66.667 7.74 4.23 0.00 4.45
3763 5341 3.625897 TCCAGTGTGACGCAGGGG 61.626 66.667 7.74 1.71 0.00 4.79
3764 5342 3.941188 CCAGTGTGACGCAGGGGT 61.941 66.667 0.00 0.00 0.00 4.95
3860 5438 1.639722 TTGGACTCCGACAGATTGGA 58.360 50.000 0.00 0.00 36.86 3.53
3989 5571 3.703556 TGATTTCCCAAGAAGCAACAACA 59.296 39.130 0.00 0.00 32.35 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.554395 TACAAGTAATTGTCACAATCTGAAAGA 57.446 29.630 12.49 0.00 41.17 2.52
4 5 8.946085 GGATACAAGTAATTGTCACAATCTGAA 58.054 33.333 12.49 0.00 36.44 3.02
5 6 8.492673 GGATACAAGTAATTGTCACAATCTGA 57.507 34.615 12.49 0.00 36.44 3.27
25 26 6.867662 CAGTGGGATGAATTTACTGGATAC 57.132 41.667 0.00 0.00 36.12 2.24
42 43 0.250553 TTTGTTACGCTCCCAGTGGG 60.251 55.000 23.57 23.57 46.11 4.61
43 44 1.600023 TTTTGTTACGCTCCCAGTGG 58.400 50.000 0.63 0.63 0.00 4.00
44 45 2.616842 AGTTTTTGTTACGCTCCCAGTG 59.383 45.455 0.00 0.00 0.00 3.66
45 46 2.927028 AGTTTTTGTTACGCTCCCAGT 58.073 42.857 0.00 0.00 0.00 4.00
46 47 4.693566 TGATAGTTTTTGTTACGCTCCCAG 59.306 41.667 0.00 0.00 0.00 4.45
47 48 4.643463 TGATAGTTTTTGTTACGCTCCCA 58.357 39.130 0.00 0.00 0.00 4.37
48 49 5.616488 TTGATAGTTTTTGTTACGCTCCC 57.384 39.130 0.00 0.00 0.00 4.30
49 50 5.086727 GCTTGATAGTTTTTGTTACGCTCC 58.913 41.667 0.00 0.00 0.00 4.70
50 51 5.685841 TGCTTGATAGTTTTTGTTACGCTC 58.314 37.500 0.00 0.00 0.00 5.03
51 52 5.682943 TGCTTGATAGTTTTTGTTACGCT 57.317 34.783 0.00 0.00 0.00 5.07
52 53 6.140110 TCTTGCTTGATAGTTTTTGTTACGC 58.860 36.000 0.00 0.00 0.00 4.42
53 54 8.629986 CATTCTTGCTTGATAGTTTTTGTTACG 58.370 33.333 0.00 0.00 0.00 3.18
54 55 9.677567 TCATTCTTGCTTGATAGTTTTTGTTAC 57.322 29.630 0.00 0.00 0.00 2.50
55 56 9.897744 CTCATTCTTGCTTGATAGTTTTTGTTA 57.102 29.630 0.00 0.00 0.00 2.41
56 57 8.632679 TCTCATTCTTGCTTGATAGTTTTTGTT 58.367 29.630 0.00 0.00 0.00 2.83
57 58 8.169977 TCTCATTCTTGCTTGATAGTTTTTGT 57.830 30.769 0.00 0.00 0.00 2.83
58 59 8.909671 GTTCTCATTCTTGCTTGATAGTTTTTG 58.090 33.333 0.00 0.00 0.00 2.44
59 60 8.632679 TGTTCTCATTCTTGCTTGATAGTTTTT 58.367 29.630 0.00 0.00 0.00 1.94
60 61 8.169977 TGTTCTCATTCTTGCTTGATAGTTTT 57.830 30.769 0.00 0.00 0.00 2.43
61 62 7.574592 GCTGTTCTCATTCTTGCTTGATAGTTT 60.575 37.037 0.00 0.00 0.00 2.66
62 63 6.128063 GCTGTTCTCATTCTTGCTTGATAGTT 60.128 38.462 0.00 0.00 0.00 2.24
63 64 5.353678 GCTGTTCTCATTCTTGCTTGATAGT 59.646 40.000 0.00 0.00 0.00 2.12
64 65 5.353400 TGCTGTTCTCATTCTTGCTTGATAG 59.647 40.000 0.00 0.00 0.00 2.08
65 66 5.247862 TGCTGTTCTCATTCTTGCTTGATA 58.752 37.500 0.00 0.00 0.00 2.15
66 67 4.077108 TGCTGTTCTCATTCTTGCTTGAT 58.923 39.130 0.00 0.00 0.00 2.57
67 68 3.479489 TGCTGTTCTCATTCTTGCTTGA 58.521 40.909 0.00 0.00 0.00 3.02
68 69 3.909776 TGCTGTTCTCATTCTTGCTTG 57.090 42.857 0.00 0.00 0.00 4.01
69 70 3.126514 CGATGCTGTTCTCATTCTTGCTT 59.873 43.478 0.00 0.00 0.00 3.91
70 71 2.676839 CGATGCTGTTCTCATTCTTGCT 59.323 45.455 0.00 0.00 0.00 3.91
71 72 2.790468 GCGATGCTGTTCTCATTCTTGC 60.790 50.000 0.00 0.00 0.00 4.01
72 73 2.676839 AGCGATGCTGTTCTCATTCTTG 59.323 45.455 0.00 0.00 37.57 3.02
73 74 2.935201 GAGCGATGCTGTTCTCATTCTT 59.065 45.455 0.00 0.00 39.88 2.52
74 75 2.168106 AGAGCGATGCTGTTCTCATTCT 59.832 45.455 0.00 0.00 39.88 2.40
75 76 2.548875 AGAGCGATGCTGTTCTCATTC 58.451 47.619 0.00 0.00 39.88 2.67
76 77 2.676839 CAAGAGCGATGCTGTTCTCATT 59.323 45.455 0.00 0.00 40.15 2.57
77 78 2.093816 TCAAGAGCGATGCTGTTCTCAT 60.094 45.455 0.00 0.00 40.15 2.90
78 79 1.273327 TCAAGAGCGATGCTGTTCTCA 59.727 47.619 0.00 0.00 40.15 3.27
79 80 1.658095 GTCAAGAGCGATGCTGTTCTC 59.342 52.381 0.00 0.00 40.15 2.87
80 81 1.674221 GGTCAAGAGCGATGCTGTTCT 60.674 52.381 0.00 0.00 40.15 3.01
81 82 0.723981 GGTCAAGAGCGATGCTGTTC 59.276 55.000 0.00 0.00 40.15 3.18
82 83 0.674895 GGGTCAAGAGCGATGCTGTT 60.675 55.000 0.00 0.00 42.87 3.16
83 84 1.078848 GGGTCAAGAGCGATGCTGT 60.079 57.895 0.00 0.00 39.88 4.40
84 85 1.817099 GGGGTCAAGAGCGATGCTG 60.817 63.158 0.00 0.00 39.88 4.41
85 86 1.992277 AGGGGTCAAGAGCGATGCT 60.992 57.895 0.00 0.00 43.88 3.79
86 87 1.817099 CAGGGGTCAAGAGCGATGC 60.817 63.158 0.00 0.00 0.00 3.91
87 88 1.817099 GCAGGGGTCAAGAGCGATG 60.817 63.158 0.00 0.00 0.00 3.84
88 89 1.841302 TTGCAGGGGTCAAGAGCGAT 61.841 55.000 0.00 0.00 0.00 4.58
89 90 2.050836 TTTGCAGGGGTCAAGAGCGA 62.051 55.000 0.00 0.00 0.00 4.93
90 91 1.172180 TTTTGCAGGGGTCAAGAGCG 61.172 55.000 0.00 0.00 0.00 5.03
91 92 1.000171 CTTTTTGCAGGGGTCAAGAGC 60.000 52.381 0.00 0.00 0.00 4.09
92 93 1.615392 CCTTTTTGCAGGGGTCAAGAG 59.385 52.381 0.00 0.00 0.00 2.85
93 94 1.216678 TCCTTTTTGCAGGGGTCAAGA 59.783 47.619 0.00 0.00 34.24 3.02
94 95 1.703411 TCCTTTTTGCAGGGGTCAAG 58.297 50.000 0.00 0.00 34.24 3.02
95 96 2.166907 TTCCTTTTTGCAGGGGTCAA 57.833 45.000 0.00 0.00 34.24 3.18
96 97 2.166907 TTTCCTTTTTGCAGGGGTCA 57.833 45.000 0.00 0.00 34.24 4.02
97 98 2.801699 CGTTTTCCTTTTTGCAGGGGTC 60.802 50.000 0.00 0.00 34.24 4.46
98 99 1.138069 CGTTTTCCTTTTTGCAGGGGT 59.862 47.619 0.00 0.00 34.24 4.95
99 100 1.138069 ACGTTTTCCTTTTTGCAGGGG 59.862 47.619 0.00 0.00 34.24 4.79
100 101 2.469826 GACGTTTTCCTTTTTGCAGGG 58.530 47.619 0.00 0.00 34.24 4.45
101 102 2.116366 CGACGTTTTCCTTTTTGCAGG 58.884 47.619 0.00 0.00 34.86 4.85
102 103 1.516864 GCGACGTTTTCCTTTTTGCAG 59.483 47.619 0.00 0.00 0.00 4.41
103 104 1.551145 GCGACGTTTTCCTTTTTGCA 58.449 45.000 0.00 0.00 0.00 4.08
104 105 0.496851 CGCGACGTTTTCCTTTTTGC 59.503 50.000 0.00 0.00 0.00 3.68
105 106 0.496851 GCGCGACGTTTTCCTTTTTG 59.503 50.000 12.10 0.00 0.00 2.44
106 107 0.379316 AGCGCGACGTTTTCCTTTTT 59.621 45.000 12.10 0.00 0.00 1.94
107 108 0.379316 AAGCGCGACGTTTTCCTTTT 59.621 45.000 12.10 0.00 0.00 2.27
108 109 0.316689 CAAGCGCGACGTTTTCCTTT 60.317 50.000 12.10 0.00 0.00 3.11
109 110 1.155424 TCAAGCGCGACGTTTTCCTT 61.155 50.000 12.10 0.00 0.00 3.36
110 111 1.593209 TCAAGCGCGACGTTTTCCT 60.593 52.632 12.10 0.00 0.00 3.36
111 112 1.438222 GTCAAGCGCGACGTTTTCC 60.438 57.895 12.10 0.00 0.00 3.13
112 113 0.315544 TTGTCAAGCGCGACGTTTTC 60.316 50.000 12.10 0.00 38.84 2.29
118 119 0.928451 GTGGTTTTGTCAAGCGCGAC 60.928 55.000 12.10 4.94 36.40 5.19
156 157 0.318445 CAAAGCAGTCAAGCAGGTGC 60.318 55.000 0.00 0.00 42.49 5.01
157 158 0.313043 CCAAAGCAGTCAAGCAGGTG 59.687 55.000 0.00 0.00 36.85 4.00
158 159 0.183492 TCCAAAGCAGTCAAGCAGGT 59.817 50.000 0.00 0.00 36.85 4.00
159 160 1.201647 CATCCAAAGCAGTCAAGCAGG 59.798 52.381 0.00 0.00 36.85 4.85
161 162 0.599558 GCATCCAAAGCAGTCAAGCA 59.400 50.000 0.00 0.00 36.85 3.91
162 163 0.455633 CGCATCCAAAGCAGTCAAGC 60.456 55.000 0.00 0.00 0.00 4.01
163 164 0.169672 CCGCATCCAAAGCAGTCAAG 59.830 55.000 0.00 0.00 0.00 3.02
164 165 1.865788 GCCGCATCCAAAGCAGTCAA 61.866 55.000 0.00 0.00 0.00 3.18
165 166 2.334946 GCCGCATCCAAAGCAGTCA 61.335 57.895 0.00 0.00 0.00 3.41
166 167 2.486966 GCCGCATCCAAAGCAGTC 59.513 61.111 0.00 0.00 0.00 3.51
167 168 3.434319 CGCCGCATCCAAAGCAGT 61.434 61.111 0.00 0.00 0.00 4.40
190 191 0.744414 GCGCTCAACTGCTTATCCCA 60.744 55.000 0.00 0.00 0.00 4.37
194 195 2.464459 GCGGCGCTCAACTGCTTAT 61.464 57.895 26.86 0.00 36.45 1.73
223 231 2.755103 GTTAGGCCAAAATGTCAGGGAG 59.245 50.000 5.01 0.00 0.00 4.30
224 232 2.802719 GTTAGGCCAAAATGTCAGGGA 58.197 47.619 5.01 0.00 0.00 4.20
283 295 2.113774 CCACTTGCTGTGCCTCCA 59.886 61.111 5.15 0.00 44.92 3.86
284 296 3.368571 GCCACTTGCTGTGCCTCC 61.369 66.667 5.15 0.00 44.92 4.30
324 347 0.089516 CGTACGCCGTTTCGTTGTAC 59.910 55.000 0.52 9.45 43.15 2.90
343 366 2.877582 ATCGGTCGCGTTACGTGC 60.878 61.111 13.81 8.62 44.19 5.34
344 367 2.984466 CATCGGTCGCGTTACGTG 59.016 61.111 12.41 12.41 44.19 4.49
345 368 2.807631 AAGCATCGGTCGCGTTACGT 62.808 55.000 5.77 0.00 44.19 3.57
346 369 0.862701 TAAGCATCGGTCGCGTTACG 60.863 55.000 5.77 9.80 45.62 3.18
347 370 0.569349 GTAAGCATCGGTCGCGTTAC 59.431 55.000 5.77 0.74 0.00 2.50
348 371 0.862701 CGTAAGCATCGGTCGCGTTA 60.863 55.000 5.77 0.00 0.00 3.18
349 372 2.156446 CGTAAGCATCGGTCGCGTT 61.156 57.895 5.77 0.00 0.00 4.84
350 373 2.578713 CGTAAGCATCGGTCGCGT 60.579 61.111 5.77 0.00 0.00 6.01
362 385 3.925238 GACCATGGCGCGCGTAAG 61.925 66.667 32.35 18.09 43.44 2.34
473 499 5.593502 TGTTGATAAAAAGTGGTTTACCGGT 59.406 36.000 13.98 13.98 39.43 5.28
498 1865 4.872691 GCTAGTAGTGTCAACTGATGCATT 59.127 41.667 0.00 0.00 37.19 3.56
500 1867 3.368427 GGCTAGTAGTGTCAACTGATGCA 60.368 47.826 0.00 0.00 37.19 3.96
501 1868 3.190874 GGCTAGTAGTGTCAACTGATGC 58.809 50.000 0.00 0.00 37.19 3.91
502 1869 4.158579 TCTGGCTAGTAGTGTCAACTGATG 59.841 45.833 0.00 0.00 37.19 3.07
503 1870 4.158764 GTCTGGCTAGTAGTGTCAACTGAT 59.841 45.833 0.00 0.00 37.19 2.90
504 1871 3.506455 GTCTGGCTAGTAGTGTCAACTGA 59.494 47.826 0.00 0.00 37.19 3.41
505 1872 3.255888 TGTCTGGCTAGTAGTGTCAACTG 59.744 47.826 0.00 0.00 37.19 3.16
506 1873 3.256136 GTGTCTGGCTAGTAGTGTCAACT 59.744 47.826 0.00 0.00 40.67 3.16
507 1874 3.576648 GTGTCTGGCTAGTAGTGTCAAC 58.423 50.000 0.00 0.00 0.00 3.18
508 1875 2.228103 CGTGTCTGGCTAGTAGTGTCAA 59.772 50.000 0.00 0.00 0.00 3.18
509 1876 1.810755 CGTGTCTGGCTAGTAGTGTCA 59.189 52.381 0.00 0.00 0.00 3.58
510 1877 1.132643 CCGTGTCTGGCTAGTAGTGTC 59.867 57.143 0.00 0.00 0.00 3.67
511 1878 1.174783 CCGTGTCTGGCTAGTAGTGT 58.825 55.000 0.00 0.00 0.00 3.55
512 1879 1.460504 TCCGTGTCTGGCTAGTAGTG 58.539 55.000 0.00 0.00 0.00 2.74
529 1898 7.573968 ATTTATTTACACCTGATGCTCTTCC 57.426 36.000 0.00 0.00 0.00 3.46
554 1923 4.430007 CTTGGGATCTCGAACGTCATTTA 58.570 43.478 0.00 0.00 0.00 1.40
566 1940 3.569701 TCAACACAAAAGCTTGGGATCTC 59.430 43.478 0.00 0.00 38.31 2.75
622 2004 5.066375 GGCAGCAAAATGTGATGTGATAGTA 59.934 40.000 0.00 0.00 45.78 1.82
653 2035 7.499895 ACCTGCAAAATCAAATCAAATCAAACT 59.500 29.630 0.00 0.00 0.00 2.66
666 2048 2.485903 ACGACGTACCTGCAAAATCAA 58.514 42.857 0.00 0.00 0.00 2.57
673 2055 2.406130 CCTAAAAACGACGTACCTGCA 58.594 47.619 0.00 0.00 0.00 4.41
677 2064 2.610433 CTCCCCTAAAAACGACGTACC 58.390 52.381 0.00 0.00 0.00 3.34
681 2068 0.322648 ACCCTCCCCTAAAAACGACG 59.677 55.000 0.00 0.00 0.00 5.12
716 2104 2.404789 CGTACGCACGTATCCGGT 59.595 61.111 0.52 0.00 43.31 5.28
772 2168 3.512329 TCGTTGCCAGGATACAGTAAAGA 59.488 43.478 0.00 0.00 41.41 2.52
803 2199 7.335422 GTCACAGATTAAAGGTCTTGTGATGAT 59.665 37.037 8.17 0.00 36.78 2.45
804 2200 6.650807 GTCACAGATTAAAGGTCTTGTGATGA 59.349 38.462 8.17 0.00 36.78 2.92
805 2201 6.128172 GGTCACAGATTAAAGGTCTTGTGATG 60.128 42.308 8.17 0.00 36.78 3.07
860 2260 0.250295 GCCGCCCAACAGCTCATATA 60.250 55.000 0.00 0.00 0.00 0.86
873 2273 2.358737 CGAAGGATATGGCCGCCC 60.359 66.667 7.03 0.00 0.00 6.13
874 2274 3.050275 GCGAAGGATATGGCCGCC 61.050 66.667 1.04 1.04 39.97 6.13
875 2275 3.050275 GGCGAAGGATATGGCCGC 61.050 66.667 0.00 0.00 44.45 6.53
917 2317 3.741344 CGAATCTGTTTGAACGAACCTCT 59.259 43.478 0.00 0.00 33.09 3.69
918 2318 3.664537 GCGAATCTGTTTGAACGAACCTC 60.665 47.826 0.00 0.00 33.09 3.85
942 2343 1.015607 TACGTCGTCGAGCTGTGCTA 61.016 55.000 9.47 0.00 39.88 3.49
977 2382 2.287547 GCTAACTGATCGCTCCTCTCTG 60.288 54.545 0.00 0.00 0.00 3.35
983 2388 1.869767 CCATTGCTAACTGATCGCTCC 59.130 52.381 0.00 0.00 0.00 4.70
984 2389 1.262683 GCCATTGCTAACTGATCGCTC 59.737 52.381 0.00 0.00 33.53 5.03
1005 2410 2.649034 GTGTCCAGCGACGAGGAA 59.351 61.111 10.52 0.83 42.37 3.36
1063 2471 4.373116 CGTGGTGTACCCGCTGCT 62.373 66.667 10.84 0.00 41.91 4.24
1098 2506 1.266175 CACGACGAACCTGTGTCTACT 59.734 52.381 0.00 0.00 32.93 2.57
1128 2539 6.585322 AGCAGACACGTACTACAATTTAAGAC 59.415 38.462 0.00 0.00 0.00 3.01
1130 2541 6.669977 GCAGCAGACACGTACTACAATTTAAG 60.670 42.308 0.00 0.00 0.00 1.85
1131 2542 5.119588 GCAGCAGACACGTACTACAATTTAA 59.880 40.000 0.00 0.00 0.00 1.52
1133 2544 3.432252 GCAGCAGACACGTACTACAATTT 59.568 43.478 0.00 0.00 0.00 1.82
1134 2545 2.993899 GCAGCAGACACGTACTACAATT 59.006 45.455 0.00 0.00 0.00 2.32
1137 2548 1.068541 CAGCAGCAGACACGTACTACA 60.069 52.381 0.00 0.00 0.00 2.74
1138 2549 1.618861 CAGCAGCAGACACGTACTAC 58.381 55.000 0.00 0.00 0.00 2.73
1139 2550 0.109272 GCAGCAGCAGACACGTACTA 60.109 55.000 0.00 0.00 41.58 1.82
1140 2551 1.373497 GCAGCAGCAGACACGTACT 60.373 57.895 0.00 0.00 41.58 2.73
1141 2552 0.109272 TAGCAGCAGCAGACACGTAC 60.109 55.000 3.17 0.00 45.49 3.67
1142 2553 0.171231 CTAGCAGCAGCAGACACGTA 59.829 55.000 3.17 0.00 45.49 3.57
1143 2554 1.080230 CTAGCAGCAGCAGACACGT 60.080 57.895 3.17 0.00 45.49 4.49
1144 2555 1.808799 CCTAGCAGCAGCAGACACG 60.809 63.158 3.17 0.00 45.49 4.49
1145 2556 1.018226 CACCTAGCAGCAGCAGACAC 61.018 60.000 3.17 0.00 45.49 3.67
1146 2557 1.187567 TCACCTAGCAGCAGCAGACA 61.188 55.000 3.17 0.00 45.49 3.41
1147 2558 0.177604 ATCACCTAGCAGCAGCAGAC 59.822 55.000 3.17 0.00 45.49 3.51
1149 2560 1.015109 CAATCACCTAGCAGCAGCAG 58.985 55.000 3.17 0.00 45.49 4.24
1150 2561 1.028330 GCAATCACCTAGCAGCAGCA 61.028 55.000 3.17 0.00 45.49 4.41
1151 2562 0.747283 AGCAATCACCTAGCAGCAGC 60.747 55.000 0.00 0.00 42.56 5.25
1152 2563 1.015109 CAGCAATCACCTAGCAGCAG 58.985 55.000 0.00 0.00 0.00 4.24
1153 2564 0.614812 TCAGCAATCACCTAGCAGCA 59.385 50.000 0.00 0.00 0.00 4.41
1154 2565 1.964552 ATCAGCAATCACCTAGCAGC 58.035 50.000 0.00 0.00 0.00 5.25
1155 2566 4.274459 GGTTAATCAGCAATCACCTAGCAG 59.726 45.833 0.00 0.00 0.00 4.24
1157 2568 4.455606 AGGTTAATCAGCAATCACCTAGC 58.544 43.478 0.00 0.00 31.82 3.42
1158 2569 4.747108 CGAGGTTAATCAGCAATCACCTAG 59.253 45.833 0.00 0.00 33.13 3.02
1159 2570 4.404394 TCGAGGTTAATCAGCAATCACCTA 59.596 41.667 0.00 0.00 33.13 3.08
1160 2571 3.197766 TCGAGGTTAATCAGCAATCACCT 59.802 43.478 0.00 0.00 34.85 4.00
1161 2572 3.531538 TCGAGGTTAATCAGCAATCACC 58.468 45.455 0.00 0.00 0.00 4.02
1163 2574 4.736126 TCTCGAGGTTAATCAGCAATCA 57.264 40.909 13.56 0.00 0.00 2.57
1164 2575 4.084118 GCATCTCGAGGTTAATCAGCAATC 60.084 45.833 13.56 0.00 0.00 2.67
1165 2576 3.812053 GCATCTCGAGGTTAATCAGCAAT 59.188 43.478 13.56 0.00 0.00 3.56
1166 2577 3.198068 GCATCTCGAGGTTAATCAGCAA 58.802 45.455 13.56 0.00 0.00 3.91
1167 2578 2.168313 TGCATCTCGAGGTTAATCAGCA 59.832 45.455 13.56 7.34 0.00 4.41
1168 2579 2.826428 TGCATCTCGAGGTTAATCAGC 58.174 47.619 13.56 4.42 0.00 4.26
1169 2580 3.744942 CCATGCATCTCGAGGTTAATCAG 59.255 47.826 13.56 0.00 0.00 2.90
1170 2581 3.732212 CCATGCATCTCGAGGTTAATCA 58.268 45.455 13.56 0.84 0.00 2.57
1171 2582 2.481952 GCCATGCATCTCGAGGTTAATC 59.518 50.000 13.56 0.00 0.00 1.75
1172 2583 2.158769 TGCCATGCATCTCGAGGTTAAT 60.159 45.455 13.56 0.00 31.71 1.40
1173 2584 1.209261 TGCCATGCATCTCGAGGTTAA 59.791 47.619 13.56 0.00 31.71 2.01
1174 2585 0.829990 TGCCATGCATCTCGAGGTTA 59.170 50.000 13.56 0.00 31.71 2.85
1175 2586 1.603842 TGCCATGCATCTCGAGGTT 59.396 52.632 13.56 0.00 31.71 3.50
1176 2587 3.312799 TGCCATGCATCTCGAGGT 58.687 55.556 13.56 0.96 31.71 3.85
1185 2596 2.904131 CCATTGCCATGCCATGCA 59.096 55.556 0.00 0.00 44.86 3.96
1186 2597 2.590575 GCCATTGCCATGCCATGC 60.591 61.111 0.00 0.00 31.52 4.06
1187 2598 0.884259 CATGCCATTGCCATGCCATG 60.884 55.000 7.25 7.25 39.27 3.66
1188 2599 1.449782 CATGCCATTGCCATGCCAT 59.550 52.632 0.00 0.00 36.33 4.40
1189 2600 2.904131 CATGCCATTGCCATGCCA 59.096 55.556 0.00 0.00 36.33 4.92
1190 2601 2.590575 GCATGCCATTGCCATGCC 60.591 61.111 19.15 4.27 41.77 4.40
1214 2625 1.059994 GAATCTGCAACGCGCTCAG 59.940 57.895 5.73 11.37 43.06 3.35
1218 2629 1.584483 CCATGAATCTGCAACGCGC 60.584 57.895 5.73 0.00 42.89 6.86
1219 2630 1.584483 GCCATGAATCTGCAACGCG 60.584 57.895 3.53 3.53 0.00 6.01
1220 2631 0.524816 CTGCCATGAATCTGCAACGC 60.525 55.000 0.00 0.00 34.06 4.84
1221 2632 0.524816 GCTGCCATGAATCTGCAACG 60.525 55.000 0.00 0.00 34.06 4.10
1222 2633 0.528924 TGCTGCCATGAATCTGCAAC 59.471 50.000 0.00 0.00 34.90 4.17
1281 2700 0.250467 GGTTGGAGAAGCTGAGCACA 60.250 55.000 7.39 0.00 0.00 4.57
1485 2917 3.003480 AGCCTAGCTAGAACGCTTTTTG 58.997 45.455 22.70 2.26 41.30 2.44
1511 2943 3.743396 GTCACGAAGCTCTCAAGTCATTT 59.257 43.478 0.00 0.00 0.00 2.32
1704 3144 0.467474 ATGGCCGATCGAGAGTGGTA 60.467 55.000 18.66 0.00 0.00 3.25
1708 3148 1.736586 GTGATGGCCGATCGAGAGT 59.263 57.895 18.66 0.00 33.17 3.24
1709 3149 1.006805 GGTGATGGCCGATCGAGAG 60.007 63.158 18.66 0.27 33.17 3.20
1710 3150 1.756561 TGGTGATGGCCGATCGAGA 60.757 57.895 18.66 0.00 33.17 4.04
1711 3151 1.592669 GTGGTGATGGCCGATCGAG 60.593 63.158 18.66 8.00 33.17 4.04
1744 3184 9.307121 CCAGTAGTATGAAGTTTGTATTGAGAG 57.693 37.037 0.00 0.00 0.00 3.20
1748 3188 9.871238 ACTACCAGTAGTATGAAGTTTGTATTG 57.129 33.333 8.71 0.00 43.98 1.90
1766 3206 8.764558 TGTGTGTATGGAAATATTACTACCAGT 58.235 33.333 0.00 0.00 34.08 4.00
1767 3207 9.607988 TTGTGTGTATGGAAATATTACTACCAG 57.392 33.333 0.00 0.00 34.08 4.00
1768 3208 9.386010 GTTGTGTGTATGGAAATATTACTACCA 57.614 33.333 0.00 0.00 35.09 3.25
1769 3209 9.386010 TGTTGTGTGTATGGAAATATTACTACC 57.614 33.333 0.00 0.00 0.00 3.18
1771 3211 9.104965 GCTGTTGTGTGTATGGAAATATTACTA 57.895 33.333 0.00 0.00 0.00 1.82
1772 3212 7.609918 TGCTGTTGTGTGTATGGAAATATTACT 59.390 33.333 0.00 0.00 0.00 2.24
1773 3213 7.757526 TGCTGTTGTGTGTATGGAAATATTAC 58.242 34.615 0.00 0.00 0.00 1.89
1774 3214 7.929941 TGCTGTTGTGTGTATGGAAATATTA 57.070 32.000 0.00 0.00 0.00 0.98
1775 3215 6.832520 TGCTGTTGTGTGTATGGAAATATT 57.167 33.333 0.00 0.00 0.00 1.28
1776 3216 6.602803 TCATGCTGTTGTGTGTATGGAAATAT 59.397 34.615 0.00 0.00 0.00 1.28
1777 3217 5.942826 TCATGCTGTTGTGTGTATGGAAATA 59.057 36.000 0.00 0.00 0.00 1.40
1778 3218 4.766373 TCATGCTGTTGTGTGTATGGAAAT 59.234 37.500 0.00 0.00 0.00 2.17
1787 3227 5.063180 ACCAATAATCATGCTGTTGTGTG 57.937 39.130 0.00 0.00 0.00 3.82
1793 3233 6.745116 CATGATCAACCAATAATCATGCTGT 58.255 36.000 0.00 0.00 45.61 4.40
1803 3243 8.623903 GCTATTTTGACTCATGATCAACCAATA 58.376 33.333 15.66 15.42 35.82 1.90
1807 3268 6.441093 TGCTATTTTGACTCATGATCAACC 57.559 37.500 15.66 7.07 35.82 3.77
1866 3329 3.458579 CCGACGCACGTTGACTCG 61.459 66.667 11.94 3.30 40.78 4.18
1867 3330 2.354305 ACCGACGCACGTTGACTC 60.354 61.111 11.94 0.00 40.78 3.36
1903 3366 3.200593 CTGATCGCCTGCAGGTGC 61.201 66.667 36.56 25.34 45.04 5.01
2057 3524 2.202440 CGCGACGTCGAAGGTGAT 60.202 61.111 39.74 0.00 43.02 3.06
2127 3594 7.818950 ATGAAATGCATGCACGCAATATATGC 61.819 38.462 25.37 3.50 46.87 3.14
2128 3595 4.918583 TGAAATGCATGCACGCAATATATG 59.081 37.500 25.37 0.00 46.87 1.78
2131 3598 3.439895 TGAAATGCATGCACGCAATAT 57.560 38.095 25.37 1.29 46.87 1.28
2132 3599 2.935481 TGAAATGCATGCACGCAATA 57.065 40.000 25.37 4.76 46.87 1.90
2133 3600 2.303163 ATGAAATGCATGCACGCAAT 57.697 40.000 25.37 12.07 46.87 3.56
2144 3617 3.174375 GCTGTCGAAAGGAATGAAATGC 58.826 45.455 4.40 0.00 0.00 3.56
2145 3618 3.125146 TCGCTGTCGAAAGGAATGAAATG 59.875 43.478 4.40 0.00 42.44 2.32
2146 3619 3.334691 TCGCTGTCGAAAGGAATGAAAT 58.665 40.909 4.40 0.00 42.44 2.17
2147 3620 2.736721 CTCGCTGTCGAAAGGAATGAAA 59.263 45.455 4.40 0.00 44.98 2.69
2148 3621 2.029380 TCTCGCTGTCGAAAGGAATGAA 60.029 45.455 4.40 0.00 44.98 2.57
2150 3623 1.923204 CTCTCGCTGTCGAAAGGAATG 59.077 52.381 4.40 0.00 44.98 2.67
2153 3626 1.213013 GCTCTCGCTGTCGAAAGGA 59.787 57.895 4.40 0.00 44.98 3.36
2166 3639 2.202676 CAACCTCGGCGAGCTCTC 60.203 66.667 30.55 3.04 0.00 3.20
2168 3641 2.048127 AACAACCTCGGCGAGCTC 60.048 61.111 30.55 2.73 0.00 4.09
2174 3647 1.219646 TTCGTTACAACAACCTCGGC 58.780 50.000 0.00 0.00 0.00 5.54
2176 3649 4.208355 CACAATTCGTTACAACAACCTCG 58.792 43.478 0.00 0.00 0.00 4.63
2177 3650 5.164606 ACACAATTCGTTACAACAACCTC 57.835 39.130 0.00 0.00 0.00 3.85
2178 3651 5.276963 CGTACACAATTCGTTACAACAACCT 60.277 40.000 0.00 0.00 0.00 3.50
2179 3652 4.899616 CGTACACAATTCGTTACAACAACC 59.100 41.667 0.00 0.00 0.00 3.77
2181 3654 5.491092 CACGTACACAATTCGTTACAACAA 58.509 37.500 0.00 0.00 35.62 2.83
2182 3655 4.550447 GCACGTACACAATTCGTTACAACA 60.550 41.667 0.00 0.00 35.62 3.33
2194 3667 1.466192 CGACCTATCGCACGTACACAA 60.466 52.381 0.00 0.00 42.43 3.33
2204 3677 3.870152 CGAGTTCGACCGACCTATCGC 62.870 61.905 0.00 0.00 43.98 4.58
2207 3680 1.726265 GCGAGTTCGACCGACCTAT 59.274 57.895 5.60 0.00 43.02 2.57
2404 3880 2.522680 ATCCCGTAGTACCCCGCC 60.523 66.667 0.00 0.00 0.00 6.13
2559 4035 0.675837 TGAGACGGATCGGTCGAGTT 60.676 55.000 23.05 9.60 41.81 3.01
2561 4037 0.236187 GATGAGACGGATCGGTCGAG 59.764 60.000 23.05 0.00 41.81 4.04
2564 4040 0.318275 GCAGATGAGACGGATCGGTC 60.318 60.000 22.20 22.20 37.19 4.79
2565 4041 0.753479 AGCAGATGAGACGGATCGGT 60.753 55.000 5.49 5.49 0.00 4.69
2566 4042 0.039617 GAGCAGATGAGACGGATCGG 60.040 60.000 0.00 0.00 0.00 4.18
2567 4043 0.665298 TGAGCAGATGAGACGGATCG 59.335 55.000 0.00 0.00 0.00 3.69
2568 4044 2.879002 TTGAGCAGATGAGACGGATC 57.121 50.000 0.00 0.00 0.00 3.36
2569 4045 2.964464 AGATTGAGCAGATGAGACGGAT 59.036 45.455 0.00 0.00 0.00 4.18
2572 4048 4.298744 TGTAGATTGAGCAGATGAGACG 57.701 45.455 0.00 0.00 0.00 4.18
2573 4049 5.691305 GTCATGTAGATTGAGCAGATGAGAC 59.309 44.000 0.00 0.00 0.00 3.36
2574 4050 5.597594 AGTCATGTAGATTGAGCAGATGAGA 59.402 40.000 0.00 0.00 0.00 3.27
2575 4051 5.845103 AGTCATGTAGATTGAGCAGATGAG 58.155 41.667 0.00 0.00 0.00 2.90
2576 4052 5.866159 AGTCATGTAGATTGAGCAGATGA 57.134 39.130 0.00 0.00 0.00 2.92
2577 4053 6.510536 TGTAGTCATGTAGATTGAGCAGATG 58.489 40.000 0.00 0.00 0.00 2.90
2578 4054 6.721704 TGTAGTCATGTAGATTGAGCAGAT 57.278 37.500 0.00 0.00 0.00 2.90
2580 4056 7.089538 CCTATGTAGTCATGTAGATTGAGCAG 58.910 42.308 0.00 0.00 35.70 4.24
2581 4057 6.551227 ACCTATGTAGTCATGTAGATTGAGCA 59.449 38.462 0.00 0.00 35.70 4.26
2582 4058 6.987386 ACCTATGTAGTCATGTAGATTGAGC 58.013 40.000 0.00 0.00 35.70 4.26
2583 4059 9.900710 GTTACCTATGTAGTCATGTAGATTGAG 57.099 37.037 0.00 0.00 35.70 3.02
2584 4060 8.565416 CGTTACCTATGTAGTCATGTAGATTGA 58.435 37.037 0.00 0.00 35.70 2.57
2585 4061 8.350722 ACGTTACCTATGTAGTCATGTAGATTG 58.649 37.037 0.00 0.00 35.70 2.67
2586 4062 8.461249 ACGTTACCTATGTAGTCATGTAGATT 57.539 34.615 0.00 0.00 35.70 2.40
2588 4064 7.201758 CCAACGTTACCTATGTAGTCATGTAGA 60.202 40.741 0.00 0.00 35.70 2.59
2589 4065 6.916387 CCAACGTTACCTATGTAGTCATGTAG 59.084 42.308 0.00 0.00 35.70 2.74
2591 4067 5.186409 ACCAACGTTACCTATGTAGTCATGT 59.814 40.000 0.00 0.00 35.70 3.21
2592 4068 5.518847 CACCAACGTTACCTATGTAGTCATG 59.481 44.000 0.00 0.00 35.70 3.07
2593 4069 5.419788 TCACCAACGTTACCTATGTAGTCAT 59.580 40.000 0.00 0.00 38.00 3.06
2594 4070 4.766373 TCACCAACGTTACCTATGTAGTCA 59.234 41.667 0.00 0.00 0.00 3.41
2595 4071 5.314923 TCACCAACGTTACCTATGTAGTC 57.685 43.478 0.00 0.00 0.00 2.59
2596 4072 5.419788 TCATCACCAACGTTACCTATGTAGT 59.580 40.000 0.00 0.00 0.00 2.73
2597 4073 5.898174 TCATCACCAACGTTACCTATGTAG 58.102 41.667 0.00 0.00 0.00 2.74
2598 4074 5.918426 TCATCACCAACGTTACCTATGTA 57.082 39.130 0.00 0.00 0.00 2.29
2599 4075 4.811969 TCATCACCAACGTTACCTATGT 57.188 40.909 0.00 0.00 0.00 2.29
2602 4078 3.680475 GCCATCATCACCAACGTTACCTA 60.680 47.826 0.00 0.00 0.00 3.08
2603 4079 2.939640 GCCATCATCACCAACGTTACCT 60.940 50.000 0.00 0.00 0.00 3.08
2604 4080 1.400494 GCCATCATCACCAACGTTACC 59.600 52.381 0.00 0.00 0.00 2.85
2605 4081 1.062002 CGCCATCATCACCAACGTTAC 59.938 52.381 0.00 0.00 0.00 2.50
2606 4082 1.364721 CGCCATCATCACCAACGTTA 58.635 50.000 0.00 0.00 0.00 3.18
2607 4083 1.305219 CCGCCATCATCACCAACGTT 61.305 55.000 0.00 0.00 0.00 3.99
2612 4088 2.438254 GCACCGCCATCATCACCA 60.438 61.111 0.00 0.00 0.00 4.17
2613 4089 2.438254 TGCACCGCCATCATCACC 60.438 61.111 0.00 0.00 0.00 4.02
2614 4090 3.104766 CTGCACCGCCATCATCAC 58.895 61.111 0.00 0.00 0.00 3.06
2623 4108 4.374702 CGTGAACAGCTGCACCGC 62.375 66.667 15.27 8.76 0.00 5.68
2677 4162 3.095163 CATGCCCTCCTCCAGCCT 61.095 66.667 0.00 0.00 0.00 4.58
2778 4263 4.598257 ACGAAGTCGCCCATGAAG 57.402 55.556 0.00 0.00 44.43 3.02
2854 4339 3.201708 CACTCCCCTTTGATCTTGAGGAT 59.798 47.826 10.09 0.00 37.37 3.24
2911 4464 1.352404 CCGAGGAGACGACGATGAC 59.648 63.158 0.00 0.00 37.23 3.06
3092 4646 2.398588 ACGATGATCTGGTGGTGGTAT 58.601 47.619 0.00 0.00 0.00 2.73
3139 4693 0.871722 TAGTGTCACGTTTGGCATGC 59.128 50.000 9.90 9.90 40.23 4.06
3171 4727 8.370266 TGGTTCACCACTTACTACTAATATGT 57.630 34.615 0.00 0.00 42.01 2.29
3295 4859 1.819632 AAATCCGCCCGCAGTGATC 60.820 57.895 0.00 0.00 0.00 2.92
3348 4912 0.661020 CCGTTTCAACCGGGATATGC 59.339 55.000 6.32 0.00 41.78 3.14
3359 4923 1.333619 GTTCTTGAGCTGCCGTTTCAA 59.666 47.619 0.00 0.00 0.00 2.69
3380 4947 4.641094 TCTGACTCGAGGGTTAGAGAATTC 59.359 45.833 18.41 0.00 37.87 2.17
3382 4949 4.237976 TCTGACTCGAGGGTTAGAGAAT 57.762 45.455 18.41 0.00 37.87 2.40
3383 4950 3.715638 TCTGACTCGAGGGTTAGAGAA 57.284 47.619 18.41 0.00 37.87 2.87
3384 4951 3.200165 TGATCTGACTCGAGGGTTAGAGA 59.800 47.826 18.41 8.35 35.77 3.10
3385 4952 3.314080 GTGATCTGACTCGAGGGTTAGAG 59.686 52.174 18.41 3.09 35.77 2.43
3386 4953 3.280295 GTGATCTGACTCGAGGGTTAGA 58.720 50.000 18.41 13.93 36.52 2.10
3387 4954 3.017442 TGTGATCTGACTCGAGGGTTAG 58.983 50.000 18.41 9.04 0.00 2.34
3388 4955 2.753452 GTGTGATCTGACTCGAGGGTTA 59.247 50.000 18.41 0.00 0.00 2.85
3389 4956 1.546476 GTGTGATCTGACTCGAGGGTT 59.454 52.381 18.41 0.00 0.00 4.11
3390 4957 1.178276 GTGTGATCTGACTCGAGGGT 58.822 55.000 18.41 0.00 0.00 4.34
3391 4958 1.177401 TGTGTGATCTGACTCGAGGG 58.823 55.000 18.41 6.68 0.00 4.30
3392 4959 2.223688 GGATGTGTGATCTGACTCGAGG 60.224 54.545 18.41 0.00 0.00 4.63
3393 4960 2.424956 TGGATGTGTGATCTGACTCGAG 59.575 50.000 11.84 11.84 0.00 4.04
3394 4961 2.446435 TGGATGTGTGATCTGACTCGA 58.554 47.619 0.00 0.00 0.00 4.04
3395 4962 2.947448 TGGATGTGTGATCTGACTCG 57.053 50.000 0.00 0.00 0.00 4.18
3396 4963 3.133542 TGGATGGATGTGTGATCTGACTC 59.866 47.826 0.00 0.00 0.00 3.36
3397 4964 3.109928 TGGATGGATGTGTGATCTGACT 58.890 45.455 0.00 0.00 0.00 3.41
3398 4965 3.548745 TGGATGGATGTGTGATCTGAC 57.451 47.619 0.00 0.00 0.00 3.51
3399 4966 5.308759 ACATATGGATGGATGTGTGATCTGA 59.691 40.000 7.80 0.00 37.39 3.27
3400 4967 5.557866 ACATATGGATGGATGTGTGATCTG 58.442 41.667 7.80 0.00 37.39 2.90
3401 4968 5.837770 ACATATGGATGGATGTGTGATCT 57.162 39.130 7.80 0.00 37.39 2.75
3402 4969 6.705302 AGTACATATGGATGGATGTGTGATC 58.295 40.000 7.80 0.00 36.92 2.92
3403 4970 6.270695 TGAGTACATATGGATGGATGTGTGAT 59.729 38.462 7.80 0.00 36.92 3.06
3404 4971 5.602145 TGAGTACATATGGATGGATGTGTGA 59.398 40.000 7.80 0.00 36.92 3.58
3405 4972 5.698089 GTGAGTACATATGGATGGATGTGTG 59.302 44.000 7.80 0.00 36.92 3.82
3406 4973 5.509670 CGTGAGTACATATGGATGGATGTGT 60.510 44.000 7.80 0.00 36.92 3.72
3407 4974 4.925646 CGTGAGTACATATGGATGGATGTG 59.074 45.833 7.80 0.00 36.92 3.21
3408 4975 4.588951 ACGTGAGTACATATGGATGGATGT 59.411 41.667 7.80 0.00 46.88 3.06
3409 4976 5.139435 ACGTGAGTACATATGGATGGATG 57.861 43.478 7.80 0.00 46.88 3.51
3433 5000 1.403679 TGTGTGGTACTTGCAAGTTGC 59.596 47.619 35.20 26.12 45.29 4.17
3434 5001 2.421775 TGTGTGTGGTACTTGCAAGTTG 59.578 45.455 35.20 10.15 40.37 3.16
3435 5002 2.717390 TGTGTGTGGTACTTGCAAGTT 58.283 42.857 35.20 19.78 40.37 2.66
3455 5022 0.254178 ACTGCCGCTGATGGATCTTT 59.746 50.000 4.02 0.00 0.00 2.52
3456 5023 0.254178 AACTGCCGCTGATGGATCTT 59.746 50.000 4.02 0.00 0.00 2.40
3457 5024 0.254178 AAACTGCCGCTGATGGATCT 59.746 50.000 4.02 0.00 0.00 2.75
3469 5042 4.668289 TGAAAAGAAAACGAGAAACTGCC 58.332 39.130 0.00 0.00 0.00 4.85
3578 5156 2.617774 GGTCTCGAGTATCTACACCCAC 59.382 54.545 13.13 0.00 0.00 4.61
3657 5235 1.188219 AGGCATCGGTCTGTGTCTGT 61.188 55.000 0.00 0.00 0.00 3.41
3663 5241 4.457496 CGCCAGGCATCGGTCTGT 62.457 66.667 13.30 0.00 45.43 3.41
3664 5242 2.572095 TTACGCCAGGCATCGGTCTG 62.572 60.000 13.30 0.00 46.46 3.51
3665 5243 1.686325 ATTACGCCAGGCATCGGTCT 61.686 55.000 13.30 0.00 0.00 3.85
3666 5244 1.222115 GATTACGCCAGGCATCGGTC 61.222 60.000 13.30 0.00 0.00 4.79
3667 5245 1.227556 GATTACGCCAGGCATCGGT 60.228 57.895 13.30 3.34 0.00 4.69
3668 5246 0.946221 GAGATTACGCCAGGCATCGG 60.946 60.000 13.30 0.00 0.00 4.18
3720 5298 2.291209 TGGATTGCAAGCTCTCCAAA 57.709 45.000 15.53 0.00 34.91 3.28
3735 5313 0.173481 CACACTGGACGACGATGGAT 59.827 55.000 0.00 0.00 0.00 3.41
3762 5340 0.037605 CGTTACTGGAGACCACCACC 60.038 60.000 0.00 0.00 35.91 4.61
3763 5341 0.669625 GCGTTACTGGAGACCACCAC 60.670 60.000 0.00 0.00 35.91 4.16
3764 5342 1.669440 GCGTTACTGGAGACCACCA 59.331 57.895 0.00 0.00 38.33 4.17
3839 5417 2.571653 TCCAATCTGTCGGAGTCCAATT 59.428 45.455 10.49 0.00 0.00 2.32
3989 5571 2.017049 GGTGAGTGGATTAGCGCATTT 58.983 47.619 11.47 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.