Multiple sequence alignment - TraesCS3B01G448700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G448700 | chr3B | 100.000 | 3440 | 0 | 0 | 784 | 4223 | 689420762 | 689417323 | 0.000000e+00 | 6353.0 |
1 | TraesCS3B01G448700 | chr3B | 100.000 | 509 | 0 | 0 | 1 | 509 | 689421545 | 689421037 | 0.000000e+00 | 941.0 |
2 | TraesCS3B01G448700 | chr3D | 95.422 | 2621 | 70 | 21 | 815 | 3404 | 522950786 | 522948185 | 0.000000e+00 | 4130.0 |
3 | TraesCS3B01G448700 | chr3D | 93.811 | 614 | 33 | 3 | 3610 | 4223 | 42304893 | 42305501 | 0.000000e+00 | 918.0 |
4 | TraesCS3B01G448700 | chr3D | 96.464 | 509 | 18 | 0 | 1 | 509 | 446856923 | 446856415 | 0.000000e+00 | 841.0 |
5 | TraesCS3B01G448700 | chr3D | 88.395 | 517 | 34 | 10 | 1 | 509 | 38604275 | 38603777 | 2.170000e-167 | 599.0 |
6 | TraesCS3B01G448700 | chr3D | 100.000 | 28 | 0 | 0 | 787 | 814 | 38603745 | 38603718 | 8.000000e-03 | 52.8 |
7 | TraesCS3B01G448700 | chr3A | 95.083 | 2603 | 84 | 20 | 814 | 3404 | 657615915 | 657613345 | 0.000000e+00 | 4058.0 |
8 | TraesCS3B01G448700 | chr5D | 86.048 | 2014 | 268 | 12 | 1087 | 3094 | 310696728 | 310694722 | 0.000000e+00 | 2150.0 |
9 | TraesCS3B01G448700 | chr5D | 91.176 | 510 | 42 | 3 | 1 | 509 | 57216998 | 57216491 | 0.000000e+00 | 689.0 |
10 | TraesCS3B01G448700 | chr5D | 92.027 | 439 | 30 | 4 | 18 | 456 | 510166872 | 510166439 | 2.790000e-171 | 612.0 |
11 | TraesCS3B01G448700 | chr5D | 100.000 | 30 | 0 | 0 | 784 | 813 | 510166374 | 510166345 | 5.900000e-04 | 56.5 |
12 | TraesCS3B01G448700 | chr5B | 85.964 | 2002 | 262 | 15 | 1098 | 3094 | 356718745 | 356716758 | 0.000000e+00 | 2122.0 |
13 | TraesCS3B01G448700 | chr5B | 93.679 | 617 | 36 | 3 | 3607 | 4223 | 210732851 | 210733464 | 0.000000e+00 | 920.0 |
14 | TraesCS3B01G448700 | chr5A | 85.296 | 2013 | 276 | 15 | 1087 | 3094 | 404230369 | 404228372 | 0.000000e+00 | 2060.0 |
15 | TraesCS3B01G448700 | chr5A | 91.935 | 620 | 43 | 5 | 3605 | 4223 | 698320828 | 698320215 | 0.000000e+00 | 861.0 |
16 | TraesCS3B01G448700 | chr5A | 87.805 | 82 | 10 | 0 | 2950 | 3031 | 136618384 | 136618465 | 3.480000e-16 | 97.1 |
17 | TraesCS3B01G448700 | chr4D | 93.791 | 612 | 35 | 3 | 3606 | 4216 | 501053729 | 501053120 | 0.000000e+00 | 917.0 |
18 | TraesCS3B01G448700 | chr4D | 92.182 | 614 | 42 | 4 | 3610 | 4223 | 413043769 | 413043162 | 0.000000e+00 | 863.0 |
19 | TraesCS3B01G448700 | chr4D | 91.545 | 615 | 46 | 3 | 3609 | 4223 | 384303569 | 384302961 | 0.000000e+00 | 843.0 |
20 | TraesCS3B01G448700 | chr2D | 92.763 | 608 | 34 | 6 | 3609 | 4216 | 187042884 | 187043481 | 0.000000e+00 | 870.0 |
21 | TraesCS3B01G448700 | chr2D | 92.345 | 614 | 42 | 3 | 3610 | 4223 | 631283072 | 631282464 | 0.000000e+00 | 869.0 |
22 | TraesCS3B01G448700 | chr2A | 92.257 | 607 | 42 | 3 | 3610 | 4216 | 31906259 | 31906860 | 0.000000e+00 | 856.0 |
23 | TraesCS3B01G448700 | chr7B | 79.225 | 1290 | 214 | 31 | 1846 | 3090 | 3087848 | 3086568 | 0.000000e+00 | 848.0 |
24 | TraesCS3B01G448700 | chr7B | 95.624 | 457 | 19 | 1 | 50 | 505 | 639810274 | 639810730 | 0.000000e+00 | 732.0 |
25 | TraesCS3B01G448700 | chr7D | 95.686 | 510 | 21 | 1 | 1 | 509 | 49862525 | 49862016 | 0.000000e+00 | 819.0 |
26 | TraesCS3B01G448700 | chr7D | 90.784 | 510 | 42 | 5 | 1 | 509 | 517992558 | 517993063 | 0.000000e+00 | 676.0 |
27 | TraesCS3B01G448700 | chr7D | 88.953 | 516 | 46 | 6 | 1 | 509 | 630680023 | 630679512 | 9.970000e-176 | 627.0 |
28 | TraesCS3B01G448700 | chr1D | 90.980 | 510 | 41 | 5 | 1 | 509 | 482102523 | 482102018 | 0.000000e+00 | 682.0 |
29 | TraesCS3B01G448700 | chr1D | 90.517 | 348 | 26 | 6 | 11 | 356 | 349257344 | 349257002 | 1.790000e-123 | 453.0 |
30 | TraesCS3B01G448700 | chr1A | 91.133 | 203 | 16 | 2 | 307 | 507 | 472282052 | 472282254 | 1.500000e-69 | 274.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G448700 | chr3B | 689417323 | 689421545 | 4222 | True | 3647.00 | 6353 | 100.0000 | 1 | 4223 | 2 | chr3B.!!$R1 | 4222 |
1 | TraesCS3B01G448700 | chr3D | 522948185 | 522950786 | 2601 | True | 4130.00 | 4130 | 95.4220 | 815 | 3404 | 1 | chr3D.!!$R2 | 2589 |
2 | TraesCS3B01G448700 | chr3D | 42304893 | 42305501 | 608 | False | 918.00 | 918 | 93.8110 | 3610 | 4223 | 1 | chr3D.!!$F1 | 613 |
3 | TraesCS3B01G448700 | chr3D | 446856415 | 446856923 | 508 | True | 841.00 | 841 | 96.4640 | 1 | 509 | 1 | chr3D.!!$R1 | 508 |
4 | TraesCS3B01G448700 | chr3D | 38603718 | 38604275 | 557 | True | 325.90 | 599 | 94.1975 | 1 | 814 | 2 | chr3D.!!$R3 | 813 |
5 | TraesCS3B01G448700 | chr3A | 657613345 | 657615915 | 2570 | True | 4058.00 | 4058 | 95.0830 | 814 | 3404 | 1 | chr3A.!!$R1 | 2590 |
6 | TraesCS3B01G448700 | chr5D | 310694722 | 310696728 | 2006 | True | 2150.00 | 2150 | 86.0480 | 1087 | 3094 | 1 | chr5D.!!$R2 | 2007 |
7 | TraesCS3B01G448700 | chr5D | 57216491 | 57216998 | 507 | True | 689.00 | 689 | 91.1760 | 1 | 509 | 1 | chr5D.!!$R1 | 508 |
8 | TraesCS3B01G448700 | chr5D | 510166345 | 510166872 | 527 | True | 334.25 | 612 | 96.0135 | 18 | 813 | 2 | chr5D.!!$R3 | 795 |
9 | TraesCS3B01G448700 | chr5B | 356716758 | 356718745 | 1987 | True | 2122.00 | 2122 | 85.9640 | 1098 | 3094 | 1 | chr5B.!!$R1 | 1996 |
10 | TraesCS3B01G448700 | chr5B | 210732851 | 210733464 | 613 | False | 920.00 | 920 | 93.6790 | 3607 | 4223 | 1 | chr5B.!!$F1 | 616 |
11 | TraesCS3B01G448700 | chr5A | 404228372 | 404230369 | 1997 | True | 2060.00 | 2060 | 85.2960 | 1087 | 3094 | 1 | chr5A.!!$R1 | 2007 |
12 | TraesCS3B01G448700 | chr5A | 698320215 | 698320828 | 613 | True | 861.00 | 861 | 91.9350 | 3605 | 4223 | 1 | chr5A.!!$R2 | 618 |
13 | TraesCS3B01G448700 | chr4D | 501053120 | 501053729 | 609 | True | 917.00 | 917 | 93.7910 | 3606 | 4216 | 1 | chr4D.!!$R3 | 610 |
14 | TraesCS3B01G448700 | chr4D | 413043162 | 413043769 | 607 | True | 863.00 | 863 | 92.1820 | 3610 | 4223 | 1 | chr4D.!!$R2 | 613 |
15 | TraesCS3B01G448700 | chr4D | 384302961 | 384303569 | 608 | True | 843.00 | 843 | 91.5450 | 3609 | 4223 | 1 | chr4D.!!$R1 | 614 |
16 | TraesCS3B01G448700 | chr2D | 187042884 | 187043481 | 597 | False | 870.00 | 870 | 92.7630 | 3609 | 4216 | 1 | chr2D.!!$F1 | 607 |
17 | TraesCS3B01G448700 | chr2D | 631282464 | 631283072 | 608 | True | 869.00 | 869 | 92.3450 | 3610 | 4223 | 1 | chr2D.!!$R1 | 613 |
18 | TraesCS3B01G448700 | chr2A | 31906259 | 31906860 | 601 | False | 856.00 | 856 | 92.2570 | 3610 | 4216 | 1 | chr2A.!!$F1 | 606 |
19 | TraesCS3B01G448700 | chr7B | 3086568 | 3087848 | 1280 | True | 848.00 | 848 | 79.2250 | 1846 | 3090 | 1 | chr7B.!!$R1 | 1244 |
20 | TraesCS3B01G448700 | chr7D | 49862016 | 49862525 | 509 | True | 819.00 | 819 | 95.6860 | 1 | 509 | 1 | chr7D.!!$R1 | 508 |
21 | TraesCS3B01G448700 | chr7D | 517992558 | 517993063 | 505 | False | 676.00 | 676 | 90.7840 | 1 | 509 | 1 | chr7D.!!$F1 | 508 |
22 | TraesCS3B01G448700 | chr7D | 630679512 | 630680023 | 511 | True | 627.00 | 627 | 88.9530 | 1 | 509 | 1 | chr7D.!!$R2 | 508 |
23 | TraesCS3B01G448700 | chr1D | 482102018 | 482102523 | 505 | True | 682.00 | 682 | 90.9800 | 1 | 509 | 1 | chr1D.!!$R2 | 508 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
888 | 905 | 0.111253 | AGAATCCCCATTCCATCCGC | 59.889 | 55.0 | 0.0 | 0.0 | 39.58 | 5.54 | F |
1517 | 1568 | 0.034896 | GTCACCGTCTCCACCATGTT | 59.965 | 55.0 | 0.0 | 0.0 | 0.00 | 2.71 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2304 | 2367 | 1.224592 | GCCGGTGTCCATCATTCCT | 59.775 | 57.895 | 1.90 | 0.00 | 0.00 | 3.36 | R |
3497 | 3594 | 0.323178 | AATCTTGGCCTCCAGCTGTG | 60.323 | 55.000 | 13.81 | 4.33 | 43.05 | 3.66 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
83 | 85 | 5.048224 | AGGTAATACCGATGTCACTAATCCG | 60.048 | 44.000 | 3.47 | 0.00 | 44.90 | 4.18 |
348 | 350 | 7.168972 | GCAATTTTTGTGTAAGTTGTCTGCATA | 59.831 | 33.333 | 0.00 | 0.00 | 0.00 | 3.14 |
397 | 407 | 1.065551 | GCTTATCAACGGGCCATTGTC | 59.934 | 52.381 | 12.63 | 0.00 | 0.00 | 3.18 |
431 | 448 | 3.007290 | ACATGAAGTCTTGTGAGCTGCTA | 59.993 | 43.478 | 0.15 | 0.00 | 33.67 | 3.49 |
887 | 904 | 1.901591 | CAGAATCCCCATTCCATCCG | 58.098 | 55.000 | 0.00 | 0.00 | 39.58 | 4.18 |
888 | 905 | 0.111253 | AGAATCCCCATTCCATCCGC | 59.889 | 55.000 | 0.00 | 0.00 | 39.58 | 5.54 |
889 | 906 | 0.111253 | GAATCCCCATTCCATCCGCT | 59.889 | 55.000 | 0.00 | 0.00 | 33.38 | 5.52 |
962 | 988 | 1.885850 | CGCCTATAAAAGCCGCGGT | 60.886 | 57.895 | 28.70 | 11.01 | 39.20 | 5.68 |
1443 | 1494 | 1.134901 | CTTCGACGACCTCTCCGTG | 59.865 | 63.158 | 0.00 | 0.00 | 40.67 | 4.94 |
1517 | 1568 | 0.034896 | GTCACCGTCTCCACCATGTT | 59.965 | 55.000 | 0.00 | 0.00 | 0.00 | 2.71 |
1675 | 1726 | 2.352422 | GCCTGTCCATGTCCAGCA | 59.648 | 61.111 | 3.86 | 0.00 | 0.00 | 4.41 |
2307 | 2370 | 3.691342 | CTCGTCACCCGGCAAGGA | 61.691 | 66.667 | 0.00 | 0.00 | 45.00 | 3.36 |
2312 | 2375 | 0.394352 | GTCACCCGGCAAGGAATGAT | 60.394 | 55.000 | 0.00 | 0.00 | 45.00 | 2.45 |
2646 | 2716 | 1.153549 | GCTCAGCTACGGGGACAAG | 60.154 | 63.158 | 0.00 | 0.00 | 0.00 | 3.16 |
2648 | 2718 | 2.125106 | CAGCTACGGGGACAAGCC | 60.125 | 66.667 | 0.00 | 0.00 | 39.24 | 4.35 |
2649 | 2719 | 2.606519 | AGCTACGGGGACAAGCCA | 60.607 | 61.111 | 0.00 | 0.00 | 39.24 | 4.75 |
2659 | 2729 | 1.666011 | GACAAGCCACTCGTCTCCA | 59.334 | 57.895 | 0.00 | 0.00 | 0.00 | 3.86 |
3127 | 3218 | 2.046604 | CTGCTGCTGCTGCTGGTA | 60.047 | 61.111 | 27.67 | 10.41 | 40.48 | 3.25 |
3211 | 3302 | 1.153549 | GCGGCGGAAGAATCTCTGT | 60.154 | 57.895 | 9.78 | 0.00 | 0.00 | 3.41 |
3242 | 3338 | 5.619086 | CGTGAGAGTTTTTGGTTTGTTGAGT | 60.619 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3243 | 3339 | 5.800438 | GTGAGAGTTTTTGGTTTGTTGAGTC | 59.200 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3244 | 3340 | 5.710099 | TGAGAGTTTTTGGTTTGTTGAGTCT | 59.290 | 36.000 | 0.00 | 0.00 | 0.00 | 3.24 |
3245 | 3341 | 6.208599 | TGAGAGTTTTTGGTTTGTTGAGTCTT | 59.791 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
3246 | 3342 | 6.389906 | AGAGTTTTTGGTTTGTTGAGTCTTG | 58.610 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3247 | 3343 | 6.208599 | AGAGTTTTTGGTTTGTTGAGTCTTGA | 59.791 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
3248 | 3344 | 6.156519 | AGTTTTTGGTTTGTTGAGTCTTGAC | 58.843 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3250 | 3346 | 5.560966 | TTTGGTTTGTTGAGTCTTGACTC | 57.439 | 39.130 | 20.32 | 20.32 | 37.27 | 3.36 |
3251 | 3347 | 4.487714 | TGGTTTGTTGAGTCTTGACTCT | 57.512 | 40.909 | 25.21 | 0.00 | 37.62 | 3.24 |
3252 | 3348 | 4.843728 | TGGTTTGTTGAGTCTTGACTCTT | 58.156 | 39.130 | 25.21 | 0.00 | 37.62 | 2.85 |
3253 | 3349 | 4.635765 | TGGTTTGTTGAGTCTTGACTCTTG | 59.364 | 41.667 | 25.21 | 0.00 | 37.62 | 3.02 |
3254 | 3350 | 4.876107 | GGTTTGTTGAGTCTTGACTCTTGA | 59.124 | 41.667 | 25.21 | 12.69 | 37.62 | 3.02 |
3255 | 3351 | 5.007136 | GGTTTGTTGAGTCTTGACTCTTGAG | 59.993 | 44.000 | 25.21 | 0.00 | 37.62 | 3.02 |
3256 | 3352 | 5.598416 | TTGTTGAGTCTTGACTCTTGAGA | 57.402 | 39.130 | 25.21 | 11.58 | 37.62 | 3.27 |
3258 | 3354 | 4.038522 | TGTTGAGTCTTGACTCTTGAGAGG | 59.961 | 45.833 | 25.21 | 0.00 | 46.13 | 3.69 |
3259 | 3355 | 4.105754 | TGAGTCTTGACTCTTGAGAGGA | 57.894 | 45.455 | 25.21 | 5.89 | 46.13 | 3.71 |
3260 | 3356 | 4.671831 | TGAGTCTTGACTCTTGAGAGGAT | 58.328 | 43.478 | 25.21 | 0.00 | 46.13 | 3.24 |
3261 | 3357 | 4.462132 | TGAGTCTTGACTCTTGAGAGGATG | 59.538 | 45.833 | 25.21 | 2.11 | 46.13 | 3.51 |
3262 | 3358 | 4.671831 | AGTCTTGACTCTTGAGAGGATGA | 58.328 | 43.478 | 12.32 | 4.10 | 46.13 | 2.92 |
3263 | 3359 | 4.706476 | AGTCTTGACTCTTGAGAGGATGAG | 59.294 | 45.833 | 12.32 | 5.20 | 46.13 | 2.90 |
3264 | 3360 | 4.704540 | GTCTTGACTCTTGAGAGGATGAGA | 59.295 | 45.833 | 12.32 | 7.11 | 46.13 | 3.27 |
3265 | 3361 | 5.184864 | GTCTTGACTCTTGAGAGGATGAGAA | 59.815 | 44.000 | 12.32 | 0.00 | 46.13 | 2.87 |
3266 | 3362 | 5.418524 | TCTTGACTCTTGAGAGGATGAGAAG | 59.581 | 44.000 | 12.32 | 5.28 | 46.13 | 2.85 |
3267 | 3363 | 4.928263 | TGACTCTTGAGAGGATGAGAAGA | 58.072 | 43.478 | 12.32 | 0.00 | 46.13 | 2.87 |
3268 | 3364 | 5.517924 | TGACTCTTGAGAGGATGAGAAGAT | 58.482 | 41.667 | 12.32 | 0.00 | 46.13 | 2.40 |
3269 | 3365 | 6.667661 | TGACTCTTGAGAGGATGAGAAGATA | 58.332 | 40.000 | 12.32 | 0.00 | 46.13 | 1.98 |
3270 | 3366 | 6.772233 | TGACTCTTGAGAGGATGAGAAGATAG | 59.228 | 42.308 | 12.32 | 0.00 | 46.13 | 2.08 |
3271 | 3367 | 6.672593 | ACTCTTGAGAGGATGAGAAGATAGT | 58.327 | 40.000 | 12.32 | 0.00 | 46.13 | 2.12 |
3272 | 3368 | 6.772716 | ACTCTTGAGAGGATGAGAAGATAGTC | 59.227 | 42.308 | 12.32 | 0.00 | 46.13 | 2.59 |
3273 | 3369 | 6.068010 | TCTTGAGAGGATGAGAAGATAGTCC | 58.932 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3274 | 3370 | 4.393834 | TGAGAGGATGAGAAGATAGTCCG | 58.606 | 47.826 | 0.00 | 0.00 | 34.19 | 4.79 |
3275 | 3371 | 4.103311 | TGAGAGGATGAGAAGATAGTCCGA | 59.897 | 45.833 | 0.00 | 0.00 | 34.19 | 4.55 |
3276 | 3372 | 5.222027 | TGAGAGGATGAGAAGATAGTCCGAT | 60.222 | 44.000 | 0.00 | 0.00 | 34.19 | 4.18 |
3277 | 3373 | 5.640147 | AGAGGATGAGAAGATAGTCCGATT | 58.360 | 41.667 | 0.00 | 0.00 | 34.19 | 3.34 |
3278 | 3374 | 6.785076 | AGAGGATGAGAAGATAGTCCGATTA | 58.215 | 40.000 | 0.00 | 0.00 | 34.19 | 1.75 |
3279 | 3375 | 6.884295 | AGAGGATGAGAAGATAGTCCGATTAG | 59.116 | 42.308 | 0.00 | 0.00 | 34.19 | 1.73 |
3280 | 3376 | 6.548321 | AGGATGAGAAGATAGTCCGATTAGT | 58.452 | 40.000 | 0.00 | 0.00 | 34.19 | 2.24 |
3281 | 3377 | 7.007723 | AGGATGAGAAGATAGTCCGATTAGTT | 58.992 | 38.462 | 0.00 | 0.00 | 34.19 | 2.24 |
3296 | 3392 | 2.851263 | TAGTTCGTGGTGCTTTGGAT | 57.149 | 45.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3309 | 3405 | 4.024556 | GTGCTTTGGATATCACGATCTTGG | 60.025 | 45.833 | 4.83 | 0.00 | 0.00 | 3.61 |
3315 | 3411 | 4.756642 | TGGATATCACGATCTTGGCATTTC | 59.243 | 41.667 | 4.83 | 0.00 | 0.00 | 2.17 |
3319 | 3415 | 2.927477 | TCACGATCTTGGCATTTCGTAC | 59.073 | 45.455 | 16.12 | 0.00 | 42.42 | 3.67 |
3323 | 3419 | 2.472695 | TCTTGGCATTTCGTACTGCT | 57.527 | 45.000 | 4.48 | 0.00 | 38.45 | 4.24 |
3350 | 3446 | 9.906660 | TTTTTGCAAGAGTAAATCGTCAAATAT | 57.093 | 25.926 | 0.00 | 0.00 | 30.89 | 1.28 |
3370 | 3467 | 9.760660 | CAAATATTTGTTGCTAGTTAGTCTGTC | 57.239 | 33.333 | 18.32 | 0.00 | 33.59 | 3.51 |
3404 | 3501 | 8.688747 | AGATTGAAGTTGAAATGAACTCTTCT | 57.311 | 30.769 | 0.00 | 0.00 | 35.01 | 2.85 |
3405 | 3502 | 8.782144 | AGATTGAAGTTGAAATGAACTCTTCTC | 58.218 | 33.333 | 0.00 | 0.00 | 35.01 | 2.87 |
3406 | 3503 | 6.867662 | TGAAGTTGAAATGAACTCTTCTCC | 57.132 | 37.500 | 0.00 | 0.00 | 35.01 | 3.71 |
3407 | 3504 | 5.466728 | TGAAGTTGAAATGAACTCTTCTCCG | 59.533 | 40.000 | 0.00 | 0.00 | 35.01 | 4.63 |
3408 | 3505 | 4.962155 | AGTTGAAATGAACTCTTCTCCGT | 58.038 | 39.130 | 0.00 | 0.00 | 29.85 | 4.69 |
3409 | 3506 | 4.752101 | AGTTGAAATGAACTCTTCTCCGTG | 59.248 | 41.667 | 0.00 | 0.00 | 29.85 | 4.94 |
3410 | 3507 | 4.336889 | TGAAATGAACTCTTCTCCGTGT | 57.663 | 40.909 | 0.00 | 0.00 | 0.00 | 4.49 |
3411 | 3508 | 4.703897 | TGAAATGAACTCTTCTCCGTGTT | 58.296 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
3412 | 3509 | 5.849510 | TGAAATGAACTCTTCTCCGTGTTA | 58.150 | 37.500 | 0.00 | 0.00 | 0.00 | 2.41 |
3413 | 3510 | 6.285224 | TGAAATGAACTCTTCTCCGTGTTAA | 58.715 | 36.000 | 0.00 | 0.00 | 0.00 | 2.01 |
3414 | 3511 | 6.423905 | TGAAATGAACTCTTCTCCGTGTTAAG | 59.576 | 38.462 | 0.00 | 0.00 | 0.00 | 1.85 |
3415 | 3512 | 4.252971 | TGAACTCTTCTCCGTGTTAAGG | 57.747 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
3416 | 3513 | 3.893200 | TGAACTCTTCTCCGTGTTAAGGA | 59.107 | 43.478 | 0.00 | 0.00 | 36.20 | 3.36 |
3417 | 3514 | 4.527038 | TGAACTCTTCTCCGTGTTAAGGAT | 59.473 | 41.667 | 0.00 | 0.00 | 37.13 | 3.24 |
3418 | 3515 | 4.722361 | ACTCTTCTCCGTGTTAAGGATC | 57.278 | 45.455 | 0.00 | 0.00 | 37.13 | 3.36 |
3419 | 3516 | 4.087182 | ACTCTTCTCCGTGTTAAGGATCA | 58.913 | 43.478 | 0.00 | 0.00 | 37.13 | 2.92 |
3420 | 3517 | 4.527038 | ACTCTTCTCCGTGTTAAGGATCAA | 59.473 | 41.667 | 0.00 | 0.00 | 37.13 | 2.57 |
3421 | 3518 | 5.011738 | ACTCTTCTCCGTGTTAAGGATCAAA | 59.988 | 40.000 | 0.00 | 0.00 | 37.13 | 2.69 |
3422 | 3519 | 5.235516 | TCTTCTCCGTGTTAAGGATCAAAC | 58.764 | 41.667 | 0.00 | 0.00 | 37.13 | 2.93 |
3423 | 3520 | 4.610605 | TCTCCGTGTTAAGGATCAAACA | 57.389 | 40.909 | 0.00 | 0.00 | 37.13 | 2.83 |
3424 | 3521 | 5.160607 | TCTCCGTGTTAAGGATCAAACAT | 57.839 | 39.130 | 9.77 | 0.00 | 37.87 | 2.71 |
3425 | 3522 | 4.935205 | TCTCCGTGTTAAGGATCAAACATG | 59.065 | 41.667 | 15.10 | 15.10 | 40.64 | 3.21 |
3426 | 3523 | 4.647611 | TCCGTGTTAAGGATCAAACATGT | 58.352 | 39.130 | 18.22 | 0.00 | 39.77 | 3.21 |
3427 | 3524 | 4.454161 | TCCGTGTTAAGGATCAAACATGTG | 59.546 | 41.667 | 18.22 | 12.88 | 39.77 | 3.21 |
3428 | 3525 | 4.158384 | CGTGTTAAGGATCAAACATGTGC | 58.842 | 43.478 | 0.00 | 2.89 | 37.87 | 4.57 |
3429 | 3526 | 4.083324 | CGTGTTAAGGATCAAACATGTGCT | 60.083 | 41.667 | 0.00 | 0.00 | 37.87 | 4.40 |
3430 | 3527 | 5.121611 | CGTGTTAAGGATCAAACATGTGCTA | 59.878 | 40.000 | 0.00 | 0.00 | 37.87 | 3.49 |
3431 | 3528 | 6.348132 | CGTGTTAAGGATCAAACATGTGCTAA | 60.348 | 38.462 | 0.00 | 0.00 | 37.87 | 3.09 |
3432 | 3529 | 7.538575 | GTGTTAAGGATCAAACATGTGCTAAT | 58.461 | 34.615 | 0.00 | 0.00 | 37.87 | 1.73 |
3433 | 3530 | 7.485913 | GTGTTAAGGATCAAACATGTGCTAATG | 59.514 | 37.037 | 0.00 | 0.00 | 37.87 | 1.90 |
3434 | 3531 | 7.392953 | TGTTAAGGATCAAACATGTGCTAATGA | 59.607 | 33.333 | 0.00 | 0.00 | 30.88 | 2.57 |
3435 | 3532 | 5.824904 | AGGATCAAACATGTGCTAATGAC | 57.175 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
3436 | 3533 | 4.641989 | AGGATCAAACATGTGCTAATGACC | 59.358 | 41.667 | 0.00 | 4.74 | 0.00 | 4.02 |
3437 | 3534 | 4.496341 | GGATCAAACATGTGCTAATGACCG | 60.496 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
3438 | 3535 | 3.669536 | TCAAACATGTGCTAATGACCGA | 58.330 | 40.909 | 0.00 | 0.00 | 0.00 | 4.69 |
3439 | 3536 | 4.068599 | TCAAACATGTGCTAATGACCGAA | 58.931 | 39.130 | 0.00 | 0.00 | 0.00 | 4.30 |
3440 | 3537 | 4.154015 | TCAAACATGTGCTAATGACCGAAG | 59.846 | 41.667 | 0.00 | 0.00 | 0.00 | 3.79 |
3441 | 3538 | 3.334583 | ACATGTGCTAATGACCGAAGT | 57.665 | 42.857 | 0.00 | 0.00 | 0.00 | 3.01 |
3442 | 3539 | 3.262420 | ACATGTGCTAATGACCGAAGTC | 58.738 | 45.455 | 0.00 | 0.00 | 43.83 | 3.01 |
3454 | 3551 | 4.813296 | GACCGAAGTCACAAACTCAAAT | 57.187 | 40.909 | 0.00 | 0.00 | 42.99 | 2.32 |
3455 | 3552 | 5.917541 | GACCGAAGTCACAAACTCAAATA | 57.082 | 39.130 | 0.00 | 0.00 | 42.99 | 1.40 |
3456 | 3553 | 6.295039 | GACCGAAGTCACAAACTCAAATAA | 57.705 | 37.500 | 0.00 | 0.00 | 42.99 | 1.40 |
3457 | 3554 | 6.687081 | ACCGAAGTCACAAACTCAAATAAA | 57.313 | 33.333 | 0.00 | 0.00 | 37.17 | 1.40 |
3458 | 3555 | 7.090953 | ACCGAAGTCACAAACTCAAATAAAA | 57.909 | 32.000 | 0.00 | 0.00 | 37.17 | 1.52 |
3459 | 3556 | 7.712797 | ACCGAAGTCACAAACTCAAATAAAAT | 58.287 | 30.769 | 0.00 | 0.00 | 37.17 | 1.82 |
3460 | 3557 | 8.842280 | ACCGAAGTCACAAACTCAAATAAAATA | 58.158 | 29.630 | 0.00 | 0.00 | 37.17 | 1.40 |
3461 | 3558 | 9.329913 | CCGAAGTCACAAACTCAAATAAAATAG | 57.670 | 33.333 | 0.00 | 0.00 | 37.17 | 1.73 |
3462 | 3559 | 9.878599 | CGAAGTCACAAACTCAAATAAAATAGT | 57.121 | 29.630 | 0.00 | 0.00 | 37.17 | 2.12 |
3481 | 3578 | 9.730420 | AAAATAGTTATGCGAATAACATGTTCC | 57.270 | 29.630 | 24.93 | 4.99 | 38.97 | 3.62 |
3482 | 3579 | 8.445275 | AATAGTTATGCGAATAACATGTTCCA | 57.555 | 30.769 | 24.93 | 6.34 | 38.97 | 3.53 |
3483 | 3580 | 6.942532 | AGTTATGCGAATAACATGTTCCAT | 57.057 | 33.333 | 24.93 | 12.64 | 38.97 | 3.41 |
3484 | 3581 | 9.719355 | ATAGTTATGCGAATAACATGTTCCATA | 57.281 | 29.630 | 24.93 | 11.76 | 38.97 | 2.74 |
3485 | 3582 | 8.445275 | AGTTATGCGAATAACATGTTCCATAA | 57.555 | 30.769 | 24.93 | 16.12 | 38.97 | 1.90 |
3486 | 3583 | 8.342634 | AGTTATGCGAATAACATGTTCCATAAC | 58.657 | 33.333 | 24.93 | 26.81 | 41.88 | 1.89 |
3487 | 3584 | 5.493133 | TGCGAATAACATGTTCCATAACC | 57.507 | 39.130 | 15.85 | 0.00 | 34.49 | 2.85 |
3488 | 3585 | 4.336993 | TGCGAATAACATGTTCCATAACCC | 59.663 | 41.667 | 15.85 | 0.00 | 34.49 | 4.11 |
3489 | 3586 | 4.261447 | GCGAATAACATGTTCCATAACCCC | 60.261 | 45.833 | 15.85 | 0.00 | 34.49 | 4.95 |
3490 | 3587 | 5.130350 | CGAATAACATGTTCCATAACCCCT | 58.870 | 41.667 | 15.85 | 0.00 | 34.49 | 4.79 |
3491 | 3588 | 5.592688 | CGAATAACATGTTCCATAACCCCTT | 59.407 | 40.000 | 15.85 | 0.00 | 34.49 | 3.95 |
3492 | 3589 | 6.459573 | CGAATAACATGTTCCATAACCCCTTG | 60.460 | 42.308 | 15.85 | 0.00 | 34.49 | 3.61 |
3493 | 3590 | 4.396357 | AACATGTTCCATAACCCCTTGA | 57.604 | 40.909 | 4.92 | 0.00 | 34.49 | 3.02 |
3494 | 3591 | 3.968265 | ACATGTTCCATAACCCCTTGAG | 58.032 | 45.455 | 0.00 | 0.00 | 34.49 | 3.02 |
3495 | 3592 | 2.507407 | TGTTCCATAACCCCTTGAGC | 57.493 | 50.000 | 0.00 | 0.00 | 34.49 | 4.26 |
3496 | 3593 | 1.005450 | TGTTCCATAACCCCTTGAGCC | 59.995 | 52.381 | 0.00 | 0.00 | 34.49 | 4.70 |
3497 | 3594 | 0.629058 | TTCCATAACCCCTTGAGCCC | 59.371 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
3498 | 3595 | 0.551377 | TCCATAACCCCTTGAGCCCA | 60.551 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
3499 | 3596 | 0.395724 | CCATAACCCCTTGAGCCCAC | 60.396 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
3500 | 3597 | 0.331278 | CATAACCCCTTGAGCCCACA | 59.669 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
3501 | 3598 | 0.625849 | ATAACCCCTTGAGCCCACAG | 59.374 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
3502 | 3599 | 2.137177 | TAACCCCTTGAGCCCACAGC | 62.137 | 60.000 | 0.00 | 0.00 | 44.25 | 4.40 |
3512 | 3609 | 3.970410 | CCCACAGCTGGAGGCCAA | 61.970 | 66.667 | 19.93 | 0.00 | 40.55 | 4.52 |
3513 | 3610 | 2.360852 | CCACAGCTGGAGGCCAAG | 60.361 | 66.667 | 19.93 | 0.00 | 40.55 | 3.61 |
3514 | 3611 | 2.752358 | CACAGCTGGAGGCCAAGA | 59.248 | 61.111 | 19.93 | 0.00 | 43.05 | 3.02 |
3515 | 3612 | 1.302285 | CACAGCTGGAGGCCAAGAT | 59.698 | 57.895 | 19.93 | 0.00 | 43.05 | 2.40 |
3516 | 3613 | 0.323178 | CACAGCTGGAGGCCAAGATT | 60.323 | 55.000 | 19.93 | 0.00 | 43.05 | 2.40 |
3517 | 3614 | 0.407139 | ACAGCTGGAGGCCAAGATTT | 59.593 | 50.000 | 19.93 | 0.00 | 43.05 | 2.17 |
3518 | 3615 | 1.203100 | ACAGCTGGAGGCCAAGATTTT | 60.203 | 47.619 | 19.93 | 0.00 | 43.05 | 1.82 |
3519 | 3616 | 1.203994 | CAGCTGGAGGCCAAGATTTTG | 59.796 | 52.381 | 5.01 | 0.00 | 43.05 | 2.44 |
3520 | 3617 | 1.203100 | AGCTGGAGGCCAAGATTTTGT | 60.203 | 47.619 | 5.01 | 0.00 | 43.05 | 2.83 |
3521 | 3618 | 1.620323 | GCTGGAGGCCAAGATTTTGTT | 59.380 | 47.619 | 5.01 | 0.00 | 30.80 | 2.83 |
3522 | 3619 | 2.037641 | GCTGGAGGCCAAGATTTTGTTT | 59.962 | 45.455 | 5.01 | 0.00 | 30.80 | 2.83 |
3523 | 3620 | 3.494924 | GCTGGAGGCCAAGATTTTGTTTT | 60.495 | 43.478 | 5.01 | 0.00 | 30.80 | 2.43 |
3524 | 3621 | 4.262420 | GCTGGAGGCCAAGATTTTGTTTTA | 60.262 | 41.667 | 5.01 | 0.00 | 30.80 | 1.52 |
3525 | 3622 | 5.569428 | GCTGGAGGCCAAGATTTTGTTTTAT | 60.569 | 40.000 | 5.01 | 0.00 | 30.80 | 1.40 |
3526 | 3623 | 6.432403 | TGGAGGCCAAGATTTTGTTTTATT | 57.568 | 33.333 | 5.01 | 0.00 | 32.21 | 1.40 |
3527 | 3624 | 6.229733 | TGGAGGCCAAGATTTTGTTTTATTG | 58.770 | 36.000 | 5.01 | 0.00 | 32.21 | 1.90 |
3528 | 3625 | 6.183361 | TGGAGGCCAAGATTTTGTTTTATTGT | 60.183 | 34.615 | 5.01 | 0.00 | 32.21 | 2.71 |
3529 | 3626 | 7.015682 | TGGAGGCCAAGATTTTGTTTTATTGTA | 59.984 | 33.333 | 5.01 | 0.00 | 32.21 | 2.41 |
3530 | 3627 | 8.040727 | GGAGGCCAAGATTTTGTTTTATTGTAT | 58.959 | 33.333 | 5.01 | 0.00 | 32.21 | 2.29 |
3531 | 3628 | 8.776376 | AGGCCAAGATTTTGTTTTATTGTATG | 57.224 | 30.769 | 5.01 | 0.00 | 32.21 | 2.39 |
3532 | 3629 | 8.592809 | AGGCCAAGATTTTGTTTTATTGTATGA | 58.407 | 29.630 | 5.01 | 0.00 | 32.21 | 2.15 |
3533 | 3630 | 9.213799 | GGCCAAGATTTTGTTTTATTGTATGAA | 57.786 | 29.630 | 0.00 | 0.00 | 32.21 | 2.57 |
3540 | 3637 | 8.649973 | TTTTGTTTTATTGTATGAACACCACC | 57.350 | 30.769 | 0.00 | 0.00 | 34.61 | 4.61 |
3541 | 3638 | 6.003234 | TGTTTTATTGTATGAACACCACCG | 57.997 | 37.500 | 0.00 | 0.00 | 34.61 | 4.94 |
3542 | 3639 | 5.048643 | TGTTTTATTGTATGAACACCACCGG | 60.049 | 40.000 | 0.00 | 0.00 | 34.61 | 5.28 |
3543 | 3640 | 2.871096 | ATTGTATGAACACCACCGGT | 57.129 | 45.000 | 0.00 | 0.00 | 34.61 | 5.28 |
3544 | 3641 | 2.642154 | TTGTATGAACACCACCGGTT | 57.358 | 45.000 | 2.97 | 0.00 | 34.61 | 4.44 |
3545 | 3642 | 3.766068 | TTGTATGAACACCACCGGTTA | 57.234 | 42.857 | 2.97 | 0.00 | 34.61 | 2.85 |
3546 | 3643 | 3.042871 | TGTATGAACACCACCGGTTAC | 57.957 | 47.619 | 2.97 | 2.67 | 31.02 | 2.50 |
3547 | 3644 | 2.289569 | TGTATGAACACCACCGGTTACC | 60.290 | 50.000 | 2.97 | 0.00 | 31.02 | 2.85 |
3548 | 3645 | 8.996998 | TATTGTATGAACACCACCGGTTACCG | 62.997 | 46.154 | 17.88 | 17.88 | 40.30 | 4.02 |
3557 | 3654 | 4.287580 | CGGTTACCGGCATGTTCA | 57.712 | 55.556 | 17.00 | 0.00 | 44.15 | 3.18 |
3558 | 3655 | 1.791662 | CGGTTACCGGCATGTTCAC | 59.208 | 57.895 | 17.00 | 0.00 | 44.15 | 3.18 |
3559 | 3656 | 1.791662 | GGTTACCGGCATGTTCACG | 59.208 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
3565 | 3662 | 4.759096 | GGCATGTTCACGGCGCAC | 62.759 | 66.667 | 10.83 | 1.53 | 0.00 | 5.34 |
3566 | 3663 | 4.024143 | GCATGTTCACGGCGCACA | 62.024 | 61.111 | 10.83 | 8.36 | 0.00 | 4.57 |
3567 | 3664 | 2.869646 | CATGTTCACGGCGCACAT | 59.130 | 55.556 | 10.83 | 10.57 | 0.00 | 3.21 |
3568 | 3665 | 1.512522 | CATGTTCACGGCGCACATG | 60.513 | 57.895 | 24.11 | 24.11 | 41.31 | 3.21 |
3569 | 3666 | 1.965930 | ATGTTCACGGCGCACATGT | 60.966 | 52.632 | 10.83 | 0.00 | 29.74 | 3.21 |
3570 | 3667 | 1.911293 | ATGTTCACGGCGCACATGTC | 61.911 | 55.000 | 10.83 | 3.20 | 29.74 | 3.06 |
3571 | 3668 | 3.047280 | TTCACGGCGCACATGTCC | 61.047 | 61.111 | 10.83 | 0.00 | 0.00 | 4.02 |
3572 | 3669 | 3.529341 | TTCACGGCGCACATGTCCT | 62.529 | 57.895 | 10.83 | 0.00 | 0.00 | 3.85 |
3573 | 3670 | 3.490759 | CACGGCGCACATGTCCTC | 61.491 | 66.667 | 10.83 | 0.00 | 0.00 | 3.71 |
3574 | 3671 | 4.760047 | ACGGCGCACATGTCCTCC | 62.760 | 66.667 | 10.83 | 0.00 | 0.00 | 4.30 |
3575 | 3672 | 4.457496 | CGGCGCACATGTCCTCCT | 62.457 | 66.667 | 10.83 | 0.00 | 0.00 | 3.69 |
3576 | 3673 | 2.821366 | GGCGCACATGTCCTCCTG | 60.821 | 66.667 | 10.83 | 0.00 | 0.00 | 3.86 |
3577 | 3674 | 2.821366 | GCGCACATGTCCTCCTGG | 60.821 | 66.667 | 0.30 | 0.00 | 0.00 | 4.45 |
3578 | 3675 | 2.124983 | CGCACATGTCCTCCTGGG | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
3579 | 3676 | 2.959484 | CGCACATGTCCTCCTGGGT | 61.959 | 63.158 | 0.00 | 0.00 | 36.25 | 4.51 |
3580 | 3677 | 1.078143 | GCACATGTCCTCCTGGGTC | 60.078 | 63.158 | 0.00 | 0.00 | 36.25 | 4.46 |
3581 | 3678 | 1.604378 | CACATGTCCTCCTGGGTCC | 59.396 | 63.158 | 0.00 | 0.00 | 36.25 | 4.46 |
3582 | 3679 | 0.911525 | CACATGTCCTCCTGGGTCCT | 60.912 | 60.000 | 0.00 | 0.00 | 36.25 | 3.85 |
3583 | 3680 | 0.911525 | ACATGTCCTCCTGGGTCCTG | 60.912 | 60.000 | 0.00 | 0.00 | 36.25 | 3.86 |
3584 | 3681 | 1.307343 | ATGTCCTCCTGGGTCCTGG | 60.307 | 63.158 | 6.59 | 6.59 | 36.25 | 4.45 |
3585 | 3682 | 3.403558 | GTCCTCCTGGGTCCTGGC | 61.404 | 72.222 | 7.92 | 0.00 | 35.38 | 4.85 |
3586 | 3683 | 4.741239 | TCCTCCTGGGTCCTGGCC | 62.741 | 72.222 | 0.00 | 0.00 | 35.38 | 5.36 |
3588 | 3685 | 3.406200 | CTCCTGGGTCCTGGCCAG | 61.406 | 72.222 | 26.87 | 26.87 | 35.38 | 4.85 |
3591 | 3688 | 3.970410 | CTGGGTCCTGGCCAGCAA | 61.970 | 66.667 | 28.39 | 14.69 | 0.00 | 3.91 |
3592 | 3689 | 4.284550 | TGGGTCCTGGCCAGCAAC | 62.285 | 66.667 | 28.39 | 24.67 | 0.00 | 4.17 |
3593 | 3690 | 3.971702 | GGGTCCTGGCCAGCAACT | 61.972 | 66.667 | 28.39 | 0.00 | 0.00 | 3.16 |
3594 | 3691 | 2.602676 | GGGTCCTGGCCAGCAACTA | 61.603 | 63.158 | 28.39 | 6.56 | 0.00 | 2.24 |
3595 | 3692 | 1.377333 | GGTCCTGGCCAGCAACTAC | 60.377 | 63.158 | 28.39 | 17.50 | 0.00 | 2.73 |
3596 | 3693 | 1.741770 | GTCCTGGCCAGCAACTACG | 60.742 | 63.158 | 28.39 | 11.95 | 0.00 | 3.51 |
3597 | 3694 | 3.127533 | CCTGGCCAGCAACTACGC | 61.128 | 66.667 | 28.39 | 0.00 | 0.00 | 4.42 |
3598 | 3695 | 3.127533 | CTGGCCAGCAACTACGCC | 61.128 | 66.667 | 22.33 | 0.00 | 41.99 | 5.68 |
3600 | 3697 | 2.438434 | GGCCAGCAACTACGCCAT | 60.438 | 61.111 | 0.00 | 0.00 | 41.25 | 4.40 |
3601 | 3698 | 2.046285 | GGCCAGCAACTACGCCATT | 61.046 | 57.895 | 0.00 | 0.00 | 41.25 | 3.16 |
3602 | 3699 | 1.137404 | GCCAGCAACTACGCCATTG | 59.863 | 57.895 | 0.00 | 0.00 | 0.00 | 2.82 |
3845 | 3943 | 2.257676 | GCCGTTCGTCCTCGTTCT | 59.742 | 61.111 | 0.00 | 0.00 | 38.33 | 3.01 |
3918 | 4016 | 1.441682 | GGTGGTCTTCGTCGACGTC | 60.442 | 63.158 | 34.40 | 22.27 | 40.80 | 4.34 |
4068 | 4166 | 3.156293 | CCCAGTCAATCAACACCATTGA | 58.844 | 45.455 | 0.00 | 0.00 | 37.82 | 2.57 |
4218 | 4318 | 1.616872 | CGCGCAAAATGCTTCAACCC | 61.617 | 55.000 | 8.75 | 0.00 | 42.25 | 4.11 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
309 | 311 | 6.119502 | CACAAAAATTGCACATTTGTACGAC | 58.880 | 36.000 | 18.10 | 0.00 | 43.36 | 4.34 |
372 | 381 | 1.543802 | TGGCCCGTTGATAAGCAAAAG | 59.456 | 47.619 | 0.00 | 0.00 | 38.44 | 2.27 |
821 | 838 | 1.710816 | CAGCCTTTTGGTAAACCCCA | 58.289 | 50.000 | 0.00 | 0.00 | 42.99 | 4.96 |
1443 | 1494 | 2.416432 | CCGGGAGAAGTCGAGGGTC | 61.416 | 68.421 | 0.00 | 0.00 | 0.00 | 4.46 |
1586 | 1637 | 4.767255 | GCCACCTGGTGAGCGAGG | 62.767 | 72.222 | 27.94 | 11.24 | 44.90 | 4.63 |
1798 | 1849 | 4.097361 | GGAGAAGGGGCGGTCCAC | 62.097 | 72.222 | 0.00 | 0.00 | 37.22 | 4.02 |
2304 | 2367 | 1.224592 | GCCGGTGTCCATCATTCCT | 59.775 | 57.895 | 1.90 | 0.00 | 0.00 | 3.36 |
2307 | 2370 | 2.824041 | GCGCCGGTGTCCATCATT | 60.824 | 61.111 | 17.91 | 0.00 | 0.00 | 2.57 |
2648 | 2718 | 4.778415 | CCGCGGTGGAGACGAGTG | 62.778 | 72.222 | 19.50 | 0.00 | 42.00 | 3.51 |
2679 | 2749 | 4.212913 | GCCGCCAGCATCTCGAGA | 62.213 | 66.667 | 19.19 | 19.19 | 42.97 | 4.04 |
3118 | 3209 | 4.530857 | ACCGGCGATACCAGCAGC | 62.531 | 66.667 | 9.30 | 0.00 | 39.03 | 5.25 |
3119 | 3210 | 2.586079 | CACCGGCGATACCAGCAG | 60.586 | 66.667 | 9.30 | 0.00 | 39.03 | 4.24 |
3120 | 3211 | 4.830765 | GCACCGGCGATACCAGCA | 62.831 | 66.667 | 9.30 | 0.00 | 39.03 | 4.41 |
3211 | 3302 | 2.872245 | CCAAAAACTCTCACGCTGAAGA | 59.128 | 45.455 | 0.00 | 0.00 | 0.00 | 2.87 |
3242 | 3338 | 4.928263 | TCTCATCCTCTCAAGAGTCAAGA | 58.072 | 43.478 | 6.30 | 1.66 | 40.48 | 3.02 |
3243 | 3339 | 5.418524 | TCTTCTCATCCTCTCAAGAGTCAAG | 59.581 | 44.000 | 6.30 | 0.00 | 40.48 | 3.02 |
3244 | 3340 | 5.328565 | TCTTCTCATCCTCTCAAGAGTCAA | 58.671 | 41.667 | 6.30 | 0.00 | 40.48 | 3.18 |
3245 | 3341 | 4.928263 | TCTTCTCATCCTCTCAAGAGTCA | 58.072 | 43.478 | 6.30 | 0.00 | 40.48 | 3.41 |
3246 | 3342 | 6.772716 | ACTATCTTCTCATCCTCTCAAGAGTC | 59.227 | 42.308 | 6.30 | 0.00 | 40.48 | 3.36 |
3247 | 3343 | 6.672593 | ACTATCTTCTCATCCTCTCAAGAGT | 58.327 | 40.000 | 6.30 | 0.00 | 40.48 | 3.24 |
3248 | 3344 | 6.207417 | GGACTATCTTCTCATCCTCTCAAGAG | 59.793 | 46.154 | 0.00 | 0.00 | 41.71 | 2.85 |
3250 | 3346 | 5.048782 | CGGACTATCTTCTCATCCTCTCAAG | 60.049 | 48.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3251 | 3347 | 4.824537 | CGGACTATCTTCTCATCCTCTCAA | 59.175 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
3252 | 3348 | 4.103311 | TCGGACTATCTTCTCATCCTCTCA | 59.897 | 45.833 | 0.00 | 0.00 | 0.00 | 3.27 |
3253 | 3349 | 4.647611 | TCGGACTATCTTCTCATCCTCTC | 58.352 | 47.826 | 0.00 | 0.00 | 0.00 | 3.20 |
3254 | 3350 | 4.715534 | TCGGACTATCTTCTCATCCTCT | 57.284 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
3255 | 3351 | 5.975693 | AATCGGACTATCTTCTCATCCTC | 57.024 | 43.478 | 0.00 | 0.00 | 0.00 | 3.71 |
3256 | 3352 | 6.548321 | ACTAATCGGACTATCTTCTCATCCT | 58.452 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
3274 | 3370 | 3.071479 | TCCAAAGCACCACGAACTAATC | 58.929 | 45.455 | 0.00 | 0.00 | 0.00 | 1.75 |
3275 | 3371 | 3.134574 | TCCAAAGCACCACGAACTAAT | 57.865 | 42.857 | 0.00 | 0.00 | 0.00 | 1.73 |
3276 | 3372 | 2.623878 | TCCAAAGCACCACGAACTAA | 57.376 | 45.000 | 0.00 | 0.00 | 0.00 | 2.24 |
3277 | 3373 | 2.851263 | ATCCAAAGCACCACGAACTA | 57.149 | 45.000 | 0.00 | 0.00 | 0.00 | 2.24 |
3278 | 3374 | 2.851263 | TATCCAAAGCACCACGAACT | 57.149 | 45.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3279 | 3375 | 3.006940 | TGATATCCAAAGCACCACGAAC | 58.993 | 45.455 | 0.00 | 0.00 | 0.00 | 3.95 |
3280 | 3376 | 3.006940 | GTGATATCCAAAGCACCACGAA | 58.993 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
3281 | 3377 | 2.627945 | GTGATATCCAAAGCACCACGA | 58.372 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
3296 | 3392 | 3.792401 | ACGAAATGCCAAGATCGTGATA | 58.208 | 40.909 | 10.47 | 0.00 | 45.77 | 2.15 |
3331 | 3427 | 9.341899 | GCAACAAATATTTGACGATTTACTCTT | 57.658 | 29.630 | 30.18 | 10.04 | 40.55 | 2.85 |
3332 | 3428 | 8.730680 | AGCAACAAATATTTGACGATTTACTCT | 58.269 | 29.630 | 30.18 | 11.19 | 40.55 | 3.24 |
3338 | 3434 | 9.988350 | CTAACTAGCAACAAATATTTGACGATT | 57.012 | 29.630 | 30.18 | 14.02 | 40.55 | 3.34 |
3350 | 3446 | 5.236478 | GCAAGACAGACTAACTAGCAACAAA | 59.764 | 40.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3370 | 3467 | 5.443185 | TTCAACTTCAATCTTGAGGCAAG | 57.557 | 39.130 | 2.30 | 0.84 | 42.25 | 4.01 |
3404 | 3501 | 4.454161 | CACATGTTTGATCCTTAACACGGA | 59.546 | 41.667 | 0.00 | 0.00 | 37.11 | 4.69 |
3405 | 3502 | 4.722194 | CACATGTTTGATCCTTAACACGG | 58.278 | 43.478 | 0.00 | 6.10 | 37.11 | 4.94 |
3406 | 3503 | 4.083324 | AGCACATGTTTGATCCTTAACACG | 60.083 | 41.667 | 0.00 | 3.16 | 37.11 | 4.49 |
3407 | 3504 | 5.376854 | AGCACATGTTTGATCCTTAACAC | 57.623 | 39.130 | 0.00 | 0.00 | 37.11 | 3.32 |
3408 | 3505 | 7.392953 | TCATTAGCACATGTTTGATCCTTAACA | 59.607 | 33.333 | 0.00 | 7.37 | 38.50 | 2.41 |
3409 | 3506 | 7.698130 | GTCATTAGCACATGTTTGATCCTTAAC | 59.302 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
3410 | 3507 | 7.148086 | GGTCATTAGCACATGTTTGATCCTTAA | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
3411 | 3508 | 6.318648 | GGTCATTAGCACATGTTTGATCCTTA | 59.681 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
3412 | 3509 | 5.126061 | GGTCATTAGCACATGTTTGATCCTT | 59.874 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3413 | 3510 | 4.641989 | GGTCATTAGCACATGTTTGATCCT | 59.358 | 41.667 | 0.00 | 0.00 | 0.00 | 3.24 |
3414 | 3511 | 4.496341 | CGGTCATTAGCACATGTTTGATCC | 60.496 | 45.833 | 0.00 | 0.00 | 0.00 | 3.36 |
3415 | 3512 | 4.332543 | TCGGTCATTAGCACATGTTTGATC | 59.667 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
3416 | 3513 | 4.260985 | TCGGTCATTAGCACATGTTTGAT | 58.739 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
3417 | 3514 | 3.669536 | TCGGTCATTAGCACATGTTTGA | 58.330 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
3418 | 3515 | 4.083324 | ACTTCGGTCATTAGCACATGTTTG | 60.083 | 41.667 | 0.00 | 0.00 | 0.00 | 2.93 |
3419 | 3516 | 4.072131 | ACTTCGGTCATTAGCACATGTTT | 58.928 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
3420 | 3517 | 3.674997 | ACTTCGGTCATTAGCACATGTT | 58.325 | 40.909 | 0.00 | 0.00 | 0.00 | 2.71 |
3421 | 3518 | 3.262420 | GACTTCGGTCATTAGCACATGT | 58.738 | 45.455 | 0.00 | 0.00 | 43.91 | 3.21 |
3422 | 3519 | 3.933155 | GACTTCGGTCATTAGCACATG | 57.067 | 47.619 | 0.00 | 0.00 | 43.91 | 3.21 |
3433 | 3530 | 4.813296 | ATTTGAGTTTGTGACTTCGGTC | 57.187 | 40.909 | 0.00 | 0.00 | 44.66 | 4.79 |
3434 | 3531 | 6.687081 | TTTATTTGAGTTTGTGACTTCGGT | 57.313 | 33.333 | 0.00 | 0.00 | 39.19 | 4.69 |
3435 | 3532 | 9.329913 | CTATTTTATTTGAGTTTGTGACTTCGG | 57.670 | 33.333 | 0.00 | 0.00 | 39.19 | 4.30 |
3436 | 3533 | 9.878599 | ACTATTTTATTTGAGTTTGTGACTTCG | 57.121 | 29.630 | 0.00 | 0.00 | 39.19 | 3.79 |
3455 | 3552 | 9.730420 | GGAACATGTTATTCGCATAACTATTTT | 57.270 | 29.630 | 11.95 | 9.30 | 43.73 | 1.82 |
3456 | 3553 | 8.898761 | TGGAACATGTTATTCGCATAACTATTT | 58.101 | 29.630 | 11.95 | 8.28 | 43.73 | 1.40 |
3457 | 3554 | 8.445275 | TGGAACATGTTATTCGCATAACTATT | 57.555 | 30.769 | 11.95 | 9.54 | 43.73 | 1.73 |
3477 | 3574 | 1.685180 | GGGCTCAAGGGGTTATGGAAC | 60.685 | 57.143 | 0.00 | 0.00 | 34.56 | 3.62 |
3478 | 3575 | 0.629058 | GGGCTCAAGGGGTTATGGAA | 59.371 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
3479 | 3576 | 0.551377 | TGGGCTCAAGGGGTTATGGA | 60.551 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3480 | 3577 | 0.395724 | GTGGGCTCAAGGGGTTATGG | 60.396 | 60.000 | 0.00 | 0.00 | 0.00 | 2.74 |
3481 | 3578 | 0.331278 | TGTGGGCTCAAGGGGTTATG | 59.669 | 55.000 | 0.00 | 0.00 | 0.00 | 1.90 |
3482 | 3579 | 0.625849 | CTGTGGGCTCAAGGGGTTAT | 59.374 | 55.000 | 0.00 | 0.00 | 0.00 | 1.89 |
3483 | 3580 | 2.074967 | CTGTGGGCTCAAGGGGTTA | 58.925 | 57.895 | 0.00 | 0.00 | 0.00 | 2.85 |
3484 | 3581 | 2.846532 | CTGTGGGCTCAAGGGGTT | 59.153 | 61.111 | 0.00 | 0.00 | 0.00 | 4.11 |
3485 | 3582 | 3.971702 | GCTGTGGGCTCAAGGGGT | 61.972 | 66.667 | 0.00 | 0.00 | 38.06 | 4.95 |
3495 | 3592 | 3.933048 | CTTGGCCTCCAGCTGTGGG | 62.933 | 68.421 | 20.19 | 17.84 | 45.11 | 4.61 |
3496 | 3593 | 2.207501 | ATCTTGGCCTCCAGCTGTGG | 62.208 | 60.000 | 13.81 | 15.15 | 46.63 | 4.17 |
3497 | 3594 | 0.323178 | AATCTTGGCCTCCAGCTGTG | 60.323 | 55.000 | 13.81 | 4.33 | 43.05 | 3.66 |
3498 | 3595 | 0.407139 | AAATCTTGGCCTCCAGCTGT | 59.593 | 50.000 | 13.81 | 0.00 | 43.05 | 4.40 |
3499 | 3596 | 1.203994 | CAAAATCTTGGCCTCCAGCTG | 59.796 | 52.381 | 6.78 | 6.78 | 43.05 | 4.24 |
3500 | 3597 | 1.203100 | ACAAAATCTTGGCCTCCAGCT | 60.203 | 47.619 | 3.32 | 0.00 | 43.05 | 4.24 |
3501 | 3598 | 1.260544 | ACAAAATCTTGGCCTCCAGC | 58.739 | 50.000 | 3.32 | 0.00 | 42.60 | 4.85 |
3502 | 3599 | 4.341366 | AAAACAAAATCTTGGCCTCCAG | 57.659 | 40.909 | 3.32 | 0.00 | 36.82 | 3.86 |
3503 | 3600 | 6.183361 | ACAATAAAACAAAATCTTGGCCTCCA | 60.183 | 34.615 | 3.32 | 0.00 | 36.82 | 3.86 |
3504 | 3601 | 6.230472 | ACAATAAAACAAAATCTTGGCCTCC | 58.770 | 36.000 | 3.32 | 0.00 | 36.82 | 4.30 |
3505 | 3602 | 8.872845 | CATACAATAAAACAAAATCTTGGCCTC | 58.127 | 33.333 | 3.32 | 0.00 | 36.82 | 4.70 |
3506 | 3603 | 8.592809 | TCATACAATAAAACAAAATCTTGGCCT | 58.407 | 29.630 | 3.32 | 0.00 | 36.82 | 5.19 |
3507 | 3604 | 8.770438 | TCATACAATAAAACAAAATCTTGGCC | 57.230 | 30.769 | 0.00 | 0.00 | 36.82 | 5.36 |
3514 | 3611 | 9.267084 | GGTGGTGTTCATACAATAAAACAAAAT | 57.733 | 29.630 | 0.00 | 0.00 | 35.69 | 1.82 |
3515 | 3612 | 7.435488 | CGGTGGTGTTCATACAATAAAACAAAA | 59.565 | 33.333 | 0.00 | 0.00 | 35.69 | 2.44 |
3516 | 3613 | 6.918569 | CGGTGGTGTTCATACAATAAAACAAA | 59.081 | 34.615 | 0.00 | 0.00 | 35.69 | 2.83 |
3517 | 3614 | 6.439599 | CGGTGGTGTTCATACAATAAAACAA | 58.560 | 36.000 | 0.00 | 0.00 | 35.69 | 2.83 |
3518 | 3615 | 5.048643 | CCGGTGGTGTTCATACAATAAAACA | 60.049 | 40.000 | 0.00 | 0.00 | 35.69 | 2.83 |
3519 | 3616 | 5.048573 | ACCGGTGGTGTTCATACAATAAAAC | 60.049 | 40.000 | 6.12 | 0.00 | 35.69 | 2.43 |
3520 | 3617 | 5.071370 | ACCGGTGGTGTTCATACAATAAAA | 58.929 | 37.500 | 6.12 | 0.00 | 35.69 | 1.52 |
3521 | 3618 | 4.653868 | ACCGGTGGTGTTCATACAATAAA | 58.346 | 39.130 | 6.12 | 0.00 | 35.69 | 1.40 |
3522 | 3619 | 4.289238 | ACCGGTGGTGTTCATACAATAA | 57.711 | 40.909 | 6.12 | 0.00 | 35.69 | 1.40 |
3523 | 3620 | 3.985019 | ACCGGTGGTGTTCATACAATA | 57.015 | 42.857 | 6.12 | 0.00 | 35.69 | 1.90 |
3524 | 3621 | 2.871096 | ACCGGTGGTGTTCATACAAT | 57.129 | 45.000 | 6.12 | 0.00 | 35.69 | 2.71 |
3525 | 3622 | 2.642154 | AACCGGTGGTGTTCATACAA | 57.358 | 45.000 | 8.52 | 0.00 | 35.34 | 2.41 |
3526 | 3623 | 2.289569 | GGTAACCGGTGGTGTTCATACA | 60.290 | 50.000 | 8.52 | 0.00 | 35.34 | 2.29 |
3527 | 3624 | 2.349590 | GGTAACCGGTGGTGTTCATAC | 58.650 | 52.381 | 8.52 | 3.76 | 35.34 | 2.39 |
3528 | 3625 | 1.067000 | CGGTAACCGGTGGTGTTCATA | 60.067 | 52.381 | 8.52 | 0.00 | 44.15 | 2.15 |
3529 | 3626 | 0.320946 | CGGTAACCGGTGGTGTTCAT | 60.321 | 55.000 | 8.52 | 0.00 | 44.15 | 2.57 |
3530 | 3627 | 1.069427 | CGGTAACCGGTGGTGTTCA | 59.931 | 57.895 | 8.52 | 0.00 | 44.15 | 3.18 |
3531 | 3628 | 3.955775 | CGGTAACCGGTGGTGTTC | 58.044 | 61.111 | 8.52 | 0.00 | 44.15 | 3.18 |
3541 | 3638 | 1.641123 | CCGTGAACATGCCGGTAACC | 61.641 | 60.000 | 1.90 | 0.00 | 37.00 | 2.85 |
3542 | 3639 | 1.791662 | CCGTGAACATGCCGGTAAC | 59.208 | 57.895 | 1.90 | 0.00 | 37.00 | 2.50 |
3543 | 3640 | 2.036006 | GCCGTGAACATGCCGGTAA | 61.036 | 57.895 | 1.90 | 0.00 | 43.56 | 2.85 |
3544 | 3641 | 2.435234 | GCCGTGAACATGCCGGTA | 60.435 | 61.111 | 1.90 | 0.00 | 43.56 | 4.02 |
3548 | 3645 | 4.759096 | GTGCGCCGTGAACATGCC | 62.759 | 66.667 | 4.18 | 0.00 | 0.00 | 4.40 |
3549 | 3646 | 3.326889 | ATGTGCGCCGTGAACATGC | 62.327 | 57.895 | 4.18 | 0.00 | 33.37 | 4.06 |
3550 | 3647 | 1.512522 | CATGTGCGCCGTGAACATG | 60.513 | 57.895 | 19.38 | 19.38 | 43.60 | 3.21 |
3551 | 3648 | 1.911293 | GACATGTGCGCCGTGAACAT | 61.911 | 55.000 | 20.38 | 13.42 | 34.92 | 2.71 |
3552 | 3649 | 2.590291 | ACATGTGCGCCGTGAACA | 60.590 | 55.556 | 20.38 | 11.79 | 34.01 | 3.18 |
3553 | 3650 | 2.173382 | GACATGTGCGCCGTGAAC | 59.827 | 61.111 | 20.38 | 6.49 | 34.01 | 3.18 |
3554 | 3651 | 3.047280 | GGACATGTGCGCCGTGAA | 61.047 | 61.111 | 20.38 | 0.00 | 34.01 | 3.18 |
3555 | 3652 | 3.932580 | GAGGACATGTGCGCCGTGA | 62.933 | 63.158 | 20.38 | 0.00 | 34.01 | 4.35 |
3556 | 3653 | 3.490759 | GAGGACATGTGCGCCGTG | 61.491 | 66.667 | 12.02 | 10.75 | 36.08 | 4.94 |
3557 | 3654 | 4.760047 | GGAGGACATGTGCGCCGT | 62.760 | 66.667 | 23.22 | 0.00 | 30.77 | 5.68 |
3558 | 3655 | 4.457496 | AGGAGGACATGTGCGCCG | 62.457 | 66.667 | 29.05 | 0.00 | 44.91 | 6.46 |
3559 | 3656 | 2.821366 | CAGGAGGACATGTGCGCC | 60.821 | 66.667 | 28.63 | 28.63 | 40.93 | 6.53 |
3560 | 3657 | 2.821366 | CCAGGAGGACATGTGCGC | 60.821 | 66.667 | 12.62 | 12.62 | 36.89 | 6.09 |
3561 | 3658 | 2.124983 | CCCAGGAGGACATGTGCG | 60.125 | 66.667 | 12.02 | 0.00 | 38.24 | 5.34 |
3562 | 3659 | 1.078143 | GACCCAGGAGGACATGTGC | 60.078 | 63.158 | 9.70 | 9.70 | 39.89 | 4.57 |
3563 | 3660 | 0.911525 | AGGACCCAGGAGGACATGTG | 60.912 | 60.000 | 1.15 | 0.00 | 39.89 | 3.21 |
3564 | 3661 | 0.911525 | CAGGACCCAGGAGGACATGT | 60.912 | 60.000 | 0.00 | 0.00 | 37.33 | 3.21 |
3565 | 3662 | 1.630126 | CCAGGACCCAGGAGGACATG | 61.630 | 65.000 | 0.00 | 0.00 | 41.02 | 3.21 |
3566 | 3663 | 1.307343 | CCAGGACCCAGGAGGACAT | 60.307 | 63.158 | 0.00 | 0.00 | 39.89 | 3.06 |
3567 | 3664 | 2.122729 | CCAGGACCCAGGAGGACA | 59.877 | 66.667 | 0.00 | 0.00 | 39.89 | 4.02 |
3568 | 3665 | 3.403558 | GCCAGGACCCAGGAGGAC | 61.404 | 72.222 | 4.77 | 0.00 | 39.89 | 3.85 |
3569 | 3666 | 4.741239 | GGCCAGGACCCAGGAGGA | 62.741 | 72.222 | 0.00 | 0.00 | 39.89 | 3.71 |
3571 | 3668 | 3.406200 | CTGGCCAGGACCCAGGAG | 61.406 | 72.222 | 26.14 | 0.00 | 44.87 | 3.69 |
3575 | 3672 | 4.284550 | GTTGCTGGCCAGGACCCA | 62.285 | 66.667 | 33.46 | 19.96 | 0.00 | 4.51 |
3576 | 3673 | 2.602676 | TAGTTGCTGGCCAGGACCC | 61.603 | 63.158 | 33.46 | 22.78 | 0.00 | 4.46 |
3577 | 3674 | 1.377333 | GTAGTTGCTGGCCAGGACC | 60.377 | 63.158 | 33.46 | 24.51 | 0.00 | 4.46 |
3578 | 3675 | 1.741770 | CGTAGTTGCTGGCCAGGAC | 60.742 | 63.158 | 33.46 | 23.51 | 0.00 | 3.85 |
3579 | 3676 | 2.662596 | CGTAGTTGCTGGCCAGGA | 59.337 | 61.111 | 33.46 | 29.53 | 0.00 | 3.86 |
3580 | 3677 | 3.127533 | GCGTAGTTGCTGGCCAGG | 61.128 | 66.667 | 33.46 | 16.16 | 0.00 | 4.45 |
3581 | 3678 | 3.127533 | GGCGTAGTTGCTGGCCAG | 61.128 | 66.667 | 29.34 | 29.34 | 44.91 | 4.85 |
3583 | 3680 | 2.046285 | AATGGCGTAGTTGCTGGCC | 61.046 | 57.895 | 0.00 | 0.00 | 45.76 | 5.36 |
3584 | 3681 | 1.137404 | CAATGGCGTAGTTGCTGGC | 59.863 | 57.895 | 0.00 | 0.00 | 34.52 | 4.85 |
3585 | 3682 | 1.137404 | GCAATGGCGTAGTTGCTGG | 59.863 | 57.895 | 11.67 | 0.00 | 45.41 | 4.85 |
3586 | 3683 | 4.771684 | GCAATGGCGTAGTTGCTG | 57.228 | 55.556 | 11.67 | 0.00 | 45.41 | 4.41 |
3589 | 3686 | 2.730928 | CCTTTTTGCAATGGCGTAGTTG | 59.269 | 45.455 | 0.00 | 0.00 | 45.35 | 3.16 |
3590 | 3687 | 2.288763 | CCCTTTTTGCAATGGCGTAGTT | 60.289 | 45.455 | 0.00 | 0.00 | 45.35 | 2.24 |
3591 | 3688 | 1.272212 | CCCTTTTTGCAATGGCGTAGT | 59.728 | 47.619 | 0.00 | 0.00 | 45.35 | 2.73 |
3592 | 3689 | 1.994916 | CCCTTTTTGCAATGGCGTAG | 58.005 | 50.000 | 0.00 | 0.00 | 45.35 | 3.51 |
3593 | 3690 | 0.037790 | GCCCTTTTTGCAATGGCGTA | 60.038 | 50.000 | 0.00 | 0.00 | 45.35 | 4.42 |
3594 | 3691 | 1.301637 | GCCCTTTTTGCAATGGCGT | 60.302 | 52.632 | 0.00 | 0.00 | 45.35 | 5.68 |
3595 | 3692 | 3.565050 | GCCCTTTTTGCAATGGCG | 58.435 | 55.556 | 0.00 | 0.00 | 45.35 | 5.69 |
3596 | 3693 | 0.391528 | ATCGCCCTTTTTGCAATGGC | 60.392 | 50.000 | 15.82 | 15.82 | 41.68 | 4.40 |
3597 | 3694 | 1.361793 | CATCGCCCTTTTTGCAATGG | 58.638 | 50.000 | 0.00 | 3.23 | 0.00 | 3.16 |
3598 | 3695 | 0.722848 | GCATCGCCCTTTTTGCAATG | 59.277 | 50.000 | 0.00 | 0.00 | 35.22 | 2.82 |
3599 | 3696 | 0.609662 | AGCATCGCCCTTTTTGCAAT | 59.390 | 45.000 | 0.00 | 0.00 | 37.56 | 3.56 |
3600 | 3697 | 1.202114 | CTAGCATCGCCCTTTTTGCAA | 59.798 | 47.619 | 0.00 | 0.00 | 37.56 | 4.08 |
3601 | 3698 | 0.810648 | CTAGCATCGCCCTTTTTGCA | 59.189 | 50.000 | 0.00 | 0.00 | 37.56 | 4.08 |
3602 | 3699 | 0.101219 | CCTAGCATCGCCCTTTTTGC | 59.899 | 55.000 | 0.00 | 0.00 | 35.34 | 3.68 |
3603 | 3700 | 0.101219 | GCCTAGCATCGCCCTTTTTG | 59.899 | 55.000 | 0.00 | 0.00 | 0.00 | 2.44 |
3604 | 3701 | 1.376609 | CGCCTAGCATCGCCCTTTTT | 61.377 | 55.000 | 0.00 | 0.00 | 0.00 | 1.94 |
3637 | 3734 | 1.302271 | GGACCGGCCGAAACTTTCT | 60.302 | 57.895 | 30.73 | 0.00 | 0.00 | 2.52 |
3722 | 3820 | 1.437986 | CCGAGGTAGAAGAAGCCCG | 59.562 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
3845 | 3943 | 1.152525 | GGCGAGGATGGGGACTAGA | 60.153 | 63.158 | 0.00 | 0.00 | 0.00 | 2.43 |
3903 | 4001 | 2.856032 | TCGACGTCGACGAAGACC | 59.144 | 61.111 | 41.52 | 22.36 | 44.22 | 3.85 |
3918 | 4016 | 1.135286 | GCCAATCTGGGAAAAGCTTCG | 60.135 | 52.381 | 0.00 | 0.00 | 38.19 | 3.79 |
4034 | 4132 | 4.742201 | CTGGGTGGCTGTCGACGG | 62.742 | 72.222 | 20.35 | 20.35 | 0.00 | 4.79 |
4037 | 4135 | 1.480212 | ATTGACTGGGTGGCTGTCGA | 61.480 | 55.000 | 0.00 | 0.00 | 33.81 | 4.20 |
4042 | 4140 | 0.478072 | TGTTGATTGACTGGGTGGCT | 59.522 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
4124 | 4224 | 3.573967 | GAGGTTGAAGCTTTTCCATCCAA | 59.426 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.