Multiple sequence alignment - TraesCS3B01G448400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G448400 chr3B 100.000 4024 0 0 1 4024 689008214 689004191 0.000000e+00 7432.0
1 TraesCS3B01G448400 chr3B 82.918 2529 329 54 1003 3503 690430726 690433179 0.000000e+00 2182.0
2 TraesCS3B01G448400 chr3B 84.172 2028 287 27 1027 3039 690460141 690462149 0.000000e+00 1936.0
3 TraesCS3B01G448400 chr3B 83.794 2024 299 23 1019 3032 690447157 690449161 0.000000e+00 1893.0
4 TraesCS3B01G448400 chr3B 80.324 2404 388 55 1020 3377 642215299 642212935 0.000000e+00 1740.0
5 TraesCS3B01G448400 chr3B 81.448 2183 345 38 1021 3179 690443066 690445212 0.000000e+00 1733.0
6 TraesCS3B01G448400 chr3B 79.047 2057 391 33 1020 3052 43527417 43525377 0.000000e+00 1375.0
7 TraesCS3B01G448400 chr3B 93.445 656 16 8 3182 3837 642223542 642222914 0.000000e+00 948.0
8 TraesCS3B01G448400 chr3B 96.316 190 7 0 3835 4024 461613611 461613800 3.020000e-81 313.0
9 TraesCS3B01G448400 chr3B 88.797 241 19 4 252 484 690417263 690417503 5.090000e-74 289.0
10 TraesCS3B01G448400 chr3B 83.333 228 31 5 3284 3511 690445410 690445630 1.900000e-48 204.0
11 TraesCS3B01G448400 chr3B 92.647 68 5 0 891 958 642215556 642215489 9.200000e-17 99.0
12 TraesCS3B01G448400 chr3B 88.060 67 3 1 338 399 689007719 689007653 1.550000e-09 75.0
13 TraesCS3B01G448400 chr3B 88.060 67 3 1 496 562 689007877 689007816 1.550000e-09 75.0
14 TraesCS3B01G448400 chrUn 84.002 2394 326 30 1239 3609 342677752 342680111 0.000000e+00 2246.0
15 TraesCS3B01G448400 chrUn 85.750 2028 256 30 1019 3032 330561340 330563348 0.000000e+00 2113.0
16 TraesCS3B01G448400 chrUn 88.539 1396 129 12 2224 3609 405666919 405668293 0.000000e+00 1663.0
17 TraesCS3B01G448400 chrUn 88.860 386 24 11 496 866 466583177 466583558 1.320000e-124 457.0
18 TraesCS3B01G448400 chrUn 88.889 234 13 3 3617 3837 405966974 405966741 3.960000e-70 276.0
19 TraesCS3B01G448400 chrUn 82.540 315 33 14 3036 3331 353196070 353196381 1.430000e-64 257.0
20 TraesCS3B01G448400 chrUn 89.372 207 18 2 1 206 466582932 466583135 1.430000e-64 257.0
21 TraesCS3B01G448400 chrUn 82.540 315 33 14 3036 3331 471390039 471389728 1.430000e-64 257.0
22 TraesCS3B01G448400 chrUn 84.058 207 26 7 1019 1223 454389946 454389745 4.100000e-45 193.0
23 TraesCS3B01G448400 chrUn 77.778 279 56 5 1031 1306 475133528 475133253 2.490000e-37 167.0
24 TraesCS3B01G448400 chrUn 82.877 146 14 6 815 957 330561016 330561153 1.960000e-23 121.0
25 TraesCS3B01G448400 chrUn 82.192 146 15 6 815 957 454390270 454390133 9.140000e-22 115.0
26 TraesCS3B01G448400 chrUn 85.870 92 8 3 313 399 466583152 466583243 4.280000e-15 93.5
27 TraesCS3B01G448400 chr3A 82.407 2518 359 49 1003 3482 658303796 658306267 0.000000e+00 2119.0
28 TraesCS3B01G448400 chr3A 82.481 2346 353 38 1020 3331 658289305 658291626 0.000000e+00 2002.0
29 TraesCS3B01G448400 chr3A 79.679 2057 380 31 1019 3052 36071075 36069034 0.000000e+00 1448.0
30 TraesCS3B01G448400 chr3A 92.381 210 13 3 3818 4024 378336960 378337169 3.040000e-76 296.0
31 TraesCS3B01G448400 chr3A 94.690 113 6 0 863 975 658303528 658303640 4.130000e-40 176.0
32 TraesCS3B01G448400 chr3A 93.913 115 7 0 1 115 658302381 658302495 1.490000e-39 174.0
33 TraesCS3B01G448400 chr3A 85.616 146 10 7 743 880 658300268 658300410 4.190000e-30 143.0
34 TraesCS3B01G448400 chr3A 87.255 102 13 0 389 490 53566343 53566444 2.540000e-22 117.0
35 TraesCS3B01G448400 chr3D 80.542 2508 401 57 1011 3478 523334820 523337280 0.000000e+00 1847.0
36 TraesCS3B01G448400 chr3D 81.327 2185 350 38 1019 3189 523555579 523557719 0.000000e+00 1722.0
37 TraesCS3B01G448400 chr3D 80.912 2216 385 28 1024 3224 523408130 523410322 0.000000e+00 1714.0
38 TraesCS3B01G448400 chr3D 82.050 2000 327 26 1019 3002 523569833 523571816 0.000000e+00 1676.0
39 TraesCS3B01G448400 chr3D 81.852 1609 247 31 1020 2612 523379705 523381284 0.000000e+00 1312.0
40 TraesCS3B01G448400 chr3D 80.519 1350 227 26 1022 2360 523560423 523561747 0.000000e+00 1003.0
41 TraesCS3B01G448400 chr3D 82.206 399 46 15 3414 3792 523557926 523558319 1.800000e-83 320.0
42 TraesCS3B01G448400 chr3D 79.715 281 37 10 713 984 523559987 523560256 6.870000e-43 185.0
43 TraesCS3B01G448400 chr3D 78.173 197 25 6 209 395 523554776 523554964 4.250000e-20 110.0
44 TraesCS3B01G448400 chr3D 92.647 68 5 0 891 958 523334572 523334639 9.200000e-17 99.0
45 TraesCS3B01G448400 chr3D 100.000 29 0 0 3221 3249 523410337 523410365 2.000000e-03 54.7
46 TraesCS3B01G448400 chr5B 97.396 192 4 1 3834 4024 75208205 75208396 3.880000e-85 326.0
47 TraesCS3B01G448400 chr5B 97.326 187 5 0 3838 4024 664880869 664881055 6.490000e-83 318.0
48 TraesCS3B01G448400 chr5B 96.257 187 7 0 3838 4024 682192187 682192001 1.400000e-79 307.0
49 TraesCS3B01G448400 chr5B 90.000 90 9 0 395 484 350412014 350411925 2.540000e-22 117.0
50 TraesCS3B01G448400 chr2B 95.288 191 9 0 3834 4024 233588134 233587944 1.820000e-78 303.0
51 TraesCS3B01G448400 chr2B 95.263 190 9 0 3835 4024 123110052 123109863 6.540000e-78 302.0
52 TraesCS3B01G448400 chr2B 95.745 188 7 1 3838 4024 750057075 750056888 6.540000e-78 302.0
53 TraesCS3B01G448400 chr2B 90.909 88 8 0 393 480 501319068 501318981 7.060000e-23 119.0
54 TraesCS3B01G448400 chr2B 87.755 98 12 0 393 490 744854600 744854697 9.140000e-22 115.0
55 TraesCS3B01G448400 chr6A 93.467 199 11 2 3828 4024 565161927 565161729 1.090000e-75 294.0
56 TraesCS3B01G448400 chr7D 88.660 97 10 1 395 490 55414244 55414148 2.540000e-22 117.0
57 TraesCS3B01G448400 chr1B 88.660 97 8 3 395 490 188913768 188913674 9.140000e-22 115.0
58 TraesCS3B01G448400 chr4A 90.588 85 8 0 406 490 47750331 47750247 3.290000e-21 113.0
59 TraesCS3B01G448400 chr1D 88.298 94 9 2 398 490 124919534 124919442 1.180000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G448400 chr3B 689004191 689008214 4023 True 2527.333333 7432 92.040000 1 4024 3 chr3B.!!$R4 4023
1 TraesCS3B01G448400 chr3B 690430726 690433179 2453 False 2182.000000 2182 82.918000 1003 3503 1 chr3B.!!$F3 2500
2 TraesCS3B01G448400 chr3B 690460141 690462149 2008 False 1936.000000 1936 84.172000 1027 3039 1 chr3B.!!$F4 2012
3 TraesCS3B01G448400 chr3B 43525377 43527417 2040 True 1375.000000 1375 79.047000 1020 3052 1 chr3B.!!$R1 2032
4 TraesCS3B01G448400 chr3B 690443066 690449161 6095 False 1276.666667 1893 82.858333 1019 3511 3 chr3B.!!$F5 2492
5 TraesCS3B01G448400 chr3B 642222914 642223542 628 True 948.000000 948 93.445000 3182 3837 1 chr3B.!!$R2 655
6 TraesCS3B01G448400 chr3B 642212935 642215556 2621 True 919.500000 1740 86.485500 891 3377 2 chr3B.!!$R3 2486
7 TraesCS3B01G448400 chrUn 342677752 342680111 2359 False 2246.000000 2246 84.002000 1239 3609 1 chrUn.!!$F1 2370
8 TraesCS3B01G448400 chrUn 405666919 405668293 1374 False 1663.000000 1663 88.539000 2224 3609 1 chrUn.!!$F3 1385
9 TraesCS3B01G448400 chrUn 330561016 330563348 2332 False 1117.000000 2113 84.313500 815 3032 2 chrUn.!!$F4 2217
10 TraesCS3B01G448400 chrUn 466582932 466583558 626 False 269.166667 457 88.034000 1 866 3 chrUn.!!$F5 865
11 TraesCS3B01G448400 chr3A 658289305 658291626 2321 False 2002.000000 2002 82.481000 1020 3331 1 chr3A.!!$F3 2311
12 TraesCS3B01G448400 chr3A 36069034 36071075 2041 True 1448.000000 1448 79.679000 1019 3052 1 chr3A.!!$R1 2033
13 TraesCS3B01G448400 chr3A 658300268 658306267 5999 False 653.000000 2119 89.156500 1 3482 4 chr3A.!!$F4 3481
14 TraesCS3B01G448400 chr3D 523569833 523571816 1983 False 1676.000000 1676 82.050000 1019 3002 1 chr3D.!!$F2 1983
15 TraesCS3B01G448400 chr3D 523379705 523381284 1579 False 1312.000000 1312 81.852000 1020 2612 1 chr3D.!!$F1 1592
16 TraesCS3B01G448400 chr3D 523334572 523337280 2708 False 973.000000 1847 86.594500 891 3478 2 chr3D.!!$F3 2587
17 TraesCS3B01G448400 chr3D 523408130 523410365 2235 False 884.350000 1714 90.456000 1024 3249 2 chr3D.!!$F4 2225
18 TraesCS3B01G448400 chr3D 523554776 523561747 6971 False 668.000000 1722 80.388000 209 3792 5 chr3D.!!$F5 3583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
826 3472 0.171007 GTAATGAACGGACGGACGGA 59.829 55.0 6.00 0.0 38.39 4.69 F
2335 9271 0.111061 ACTGGCATGGCAGAACAGAA 59.889 50.0 44.89 13.4 33.57 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2537 9491 1.757118 TCTTCCGGAATACAGCCTGAG 59.243 52.381 19.21 1.19 0.0 3.35 R
3892 10977 0.039256 CGTGGCAAAATGAGTGGTGG 60.039 55.000 0.00 0.00 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 2144 3.159298 CAGGCGAACTGGTATTGCT 57.841 52.632 0.00 0.00 43.70 3.91
71 2185 1.559682 TGCTTACTTGTCTCCCCATCC 59.440 52.381 0.00 0.00 0.00 3.51
88 2202 8.934023 TCCCCATCCACTTCAATATATTTTAC 57.066 34.615 0.00 0.00 0.00 2.01
101 2215 9.489084 TCAATATATTTTACGGATCTTGACCAG 57.511 33.333 0.00 0.00 0.00 4.00
112 2226 3.795688 TCTTGACCAGCAGGAGAATTT 57.204 42.857 0.35 0.00 38.69 1.82
113 2227 3.415212 TCTTGACCAGCAGGAGAATTTG 58.585 45.455 0.35 0.00 38.69 2.32
114 2228 2.957402 TGACCAGCAGGAGAATTTGT 57.043 45.000 0.35 0.00 38.69 2.83
123 2237 3.735746 GCAGGAGAATTTGTTGTTTTCCG 59.264 43.478 0.00 0.00 35.59 4.30
130 2244 8.026607 GGAGAATTTGTTGTTTTCCGATTATCA 58.973 33.333 0.00 0.00 0.00 2.15
193 2308 7.172361 TGTTTTTAATGCTAATGCCCTTTTGTC 59.828 33.333 0.00 0.00 38.71 3.18
194 2309 5.991933 TTAATGCTAATGCCCTTTTGTCA 57.008 34.783 0.00 0.00 38.71 3.58
200 2746 4.379499 GCTAATGCCCTTTTGTCACACTAC 60.379 45.833 0.00 0.00 0.00 2.73
206 2752 4.261801 CCCTTTTGTCACACTACCTATGG 58.738 47.826 0.00 0.00 0.00 2.74
207 2753 4.263331 CCCTTTTGTCACACTACCTATGGT 60.263 45.833 0.00 0.00 40.16 3.55
214 2798 7.247456 TGTCACACTACCTATGGTCATTTTA 57.753 36.000 0.00 0.00 37.09 1.52
224 2808 7.463431 ACCTATGGTCATTTTACAGTACCAAA 58.537 34.615 0.00 0.00 43.10 3.28
287 2879 7.928167 AGCTATTTTTCTCCTTTTTGTCCTTTG 59.072 33.333 0.00 0.00 0.00 2.77
296 2888 4.432712 CTTTTTGTCCTTTGTTCTGTGGG 58.567 43.478 0.00 0.00 0.00 4.61
300 2892 0.257328 TCCTTTGTTCTGTGGGCACA 59.743 50.000 0.00 0.00 39.32 4.57
303 2895 0.459489 TTTGTTCTGTGGGCACAAGC 59.541 50.000 0.00 0.00 41.33 4.01
305 2897 2.594303 TTCTGTGGGCACAAGCGG 60.594 61.111 0.00 0.00 41.33 5.52
353 2947 0.637195 AGGAGGCTAGGAGCAAGGTA 59.363 55.000 0.21 0.00 44.75 3.08
354 2948 1.044611 GGAGGCTAGGAGCAAGGTAG 58.955 60.000 0.21 0.00 44.75 3.18
360 2958 2.432510 GCTAGGAGCAAGGTAGTCATGT 59.567 50.000 0.00 0.00 41.89 3.21
365 2963 6.352016 AGGAGCAAGGTAGTCATGTATATG 57.648 41.667 0.00 0.00 35.57 1.78
366 2964 5.247110 AGGAGCAAGGTAGTCATGTATATGG 59.753 44.000 0.00 0.00 34.97 2.74
367 2965 5.246203 GGAGCAAGGTAGTCATGTATATGGA 59.754 44.000 0.00 0.00 34.97 3.41
368 2966 6.239600 GGAGCAAGGTAGTCATGTATATGGAA 60.240 42.308 0.00 0.00 34.97 3.53
389 2987 6.945435 TGGAATTGGTAGCTTATTGTCTTCAA 59.055 34.615 0.00 0.00 37.98 2.69
396 2994 9.542462 TGGTAGCTTATTGTCTTCAACATATAC 57.458 33.333 0.00 0.00 37.82 1.47
399 2997 8.894768 AGCTTATTGTCTTCAACATATACTCC 57.105 34.615 0.00 0.00 37.82 3.85
400 2998 7.934120 AGCTTATTGTCTTCAACATATACTCCC 59.066 37.037 0.00 0.00 37.82 4.30
402 3000 9.482627 CTTATTGTCTTCAACATATACTCCCTC 57.517 37.037 0.00 0.00 37.82 4.30
404 3002 7.496346 TTGTCTTCAACATATACTCCCTCTT 57.504 36.000 0.00 0.00 37.82 2.85
406 3004 7.918076 TGTCTTCAACATATACTCCCTCTTTT 58.082 34.615 0.00 0.00 31.20 2.27
407 3005 8.041323 TGTCTTCAACATATACTCCCTCTTTTC 58.959 37.037 0.00 0.00 31.20 2.29
409 3007 7.403231 TCTTCAACATATACTCCCTCTTTTCCT 59.597 37.037 0.00 0.00 0.00 3.36
412 3010 9.053472 TCAACATATACTCCCTCTTTTCCTAAA 57.947 33.333 0.00 0.00 0.00 1.85
413 3011 9.853177 CAACATATACTCCCTCTTTTCCTAAAT 57.147 33.333 0.00 0.00 0.00 1.40
415 3013 9.004231 ACATATACTCCCTCTTTTCCTAAATGT 57.996 33.333 0.00 0.00 0.00 2.71
419 3017 7.331089 ACTCCCTCTTTTCCTAAATGTAAGT 57.669 36.000 0.00 0.00 0.00 2.24
420 3018 7.395617 ACTCCCTCTTTTCCTAAATGTAAGTC 58.604 38.462 0.00 0.00 0.00 3.01
421 3019 7.017254 ACTCCCTCTTTTCCTAAATGTAAGTCA 59.983 37.037 0.00 0.00 0.00 3.41
422 3020 7.928873 TCCCTCTTTTCCTAAATGTAAGTCAT 58.071 34.615 0.00 0.00 38.57 3.06
452 3050 9.179909 AGAGATTCCAATATAGACTACATACGG 57.820 37.037 0.00 0.00 0.00 4.02
453 3051 9.175312 GAGATTCCAATATAGACTACATACGGA 57.825 37.037 0.00 0.00 0.00 4.69
454 3052 9.529823 AGATTCCAATATAGACTACATACGGAA 57.470 33.333 6.91 6.91 31.94 4.30
455 3053 9.570488 GATTCCAATATAGACTACATACGGAAC 57.430 37.037 6.68 0.79 30.97 3.62
456 3054 8.467963 TTCCAATATAGACTACATACGGAACA 57.532 34.615 2.00 0.00 0.00 3.18
457 3055 8.467963 TCCAATATAGACTACATACGGAACAA 57.532 34.615 0.00 0.00 0.00 2.83
458 3056 8.916062 TCCAATATAGACTACATACGGAACAAA 58.084 33.333 0.00 0.00 0.00 2.83
459 3057 8.975439 CCAATATAGACTACATACGGAACAAAC 58.025 37.037 0.00 0.00 0.00 2.93
460 3058 9.745880 CAATATAGACTACATACGGAACAAACT 57.254 33.333 0.00 0.00 0.00 2.66
461 3059 9.745880 AATATAGACTACATACGGAACAAACTG 57.254 33.333 0.00 0.00 0.00 3.16
462 3060 5.717078 AGACTACATACGGAACAAACTGA 57.283 39.130 0.00 0.00 0.00 3.41
463 3061 5.710984 AGACTACATACGGAACAAACTGAG 58.289 41.667 0.00 0.00 0.00 3.35
464 3062 5.243283 AGACTACATACGGAACAAACTGAGT 59.757 40.000 0.00 0.00 0.00 3.41
465 3063 6.432162 AGACTACATACGGAACAAACTGAGTA 59.568 38.462 0.00 0.00 0.00 2.59
466 3064 6.985117 ACTACATACGGAACAAACTGAGTAA 58.015 36.000 0.00 0.00 0.00 2.24
467 3065 7.436118 ACTACATACGGAACAAACTGAGTAAA 58.564 34.615 0.00 0.00 0.00 2.01
468 3066 8.092687 ACTACATACGGAACAAACTGAGTAAAT 58.907 33.333 0.00 0.00 0.00 1.40
469 3067 7.360575 ACATACGGAACAAACTGAGTAAATC 57.639 36.000 0.00 0.00 0.00 2.17
470 3068 7.159372 ACATACGGAACAAACTGAGTAAATCT 58.841 34.615 0.00 0.00 0.00 2.40
471 3069 8.308931 ACATACGGAACAAACTGAGTAAATCTA 58.691 33.333 0.00 0.00 0.00 1.98
472 3070 8.592998 CATACGGAACAAACTGAGTAAATCTAC 58.407 37.037 0.00 0.00 0.00 2.59
473 3071 6.518493 ACGGAACAAACTGAGTAAATCTACA 58.482 36.000 0.00 0.00 0.00 2.74
474 3072 6.645415 ACGGAACAAACTGAGTAAATCTACAG 59.355 38.462 0.00 0.00 36.58 2.74
475 3073 6.645415 CGGAACAAACTGAGTAAATCTACAGT 59.355 38.462 0.00 0.00 43.92 3.55
476 3074 7.148787 CGGAACAAACTGAGTAAATCTACAGTC 60.149 40.741 0.00 0.00 41.73 3.51
477 3075 7.873505 GGAACAAACTGAGTAAATCTACAGTCT 59.126 37.037 0.00 0.00 41.73 3.24
478 3076 9.909644 GAACAAACTGAGTAAATCTACAGTCTA 57.090 33.333 0.00 0.00 41.73 2.59
498 3096 9.557338 CAGTCTAAAATATGACTACGTATAGGC 57.443 37.037 0.00 0.00 41.06 3.93
499 3097 9.517868 AGTCTAAAATATGACTACGTATAGGCT 57.482 33.333 0.00 0.00 41.19 4.58
503 3101 8.874744 AAAATATGACTACGTATAGGCTAGGA 57.125 34.615 0.00 0.00 37.34 2.94
504 3102 8.508883 AAATATGACTACGTATAGGCTAGGAG 57.491 38.462 0.00 0.00 37.34 3.69
505 3103 3.672808 TGACTACGTATAGGCTAGGAGC 58.327 50.000 0.00 0.00 37.34 4.70
506 3104 3.072038 TGACTACGTATAGGCTAGGAGCA 59.928 47.826 0.00 0.00 44.75 4.26
507 3105 4.070716 GACTACGTATAGGCTAGGAGCAA 58.929 47.826 0.00 0.00 44.75 3.91
508 3106 4.073549 ACTACGTATAGGCTAGGAGCAAG 58.926 47.826 0.00 0.00 44.75 4.01
509 3107 2.240279 ACGTATAGGCTAGGAGCAAGG 58.760 52.381 0.00 0.00 44.75 3.61
510 3108 2.240279 CGTATAGGCTAGGAGCAAGGT 58.760 52.381 0.00 0.00 44.75 3.50
511 3109 2.628657 CGTATAGGCTAGGAGCAAGGTT 59.371 50.000 0.00 0.00 44.75 3.50
512 3110 3.305471 CGTATAGGCTAGGAGCAAGGTTC 60.305 52.174 0.00 0.00 44.75 3.62
513 3111 2.552093 TAGGCTAGGAGCAAGGTTCT 57.448 50.000 0.21 0.00 44.75 3.01
517 3115 3.198853 AGGCTAGGAGCAAGGTTCTTAAG 59.801 47.826 0.00 0.00 44.75 1.85
525 3123 3.008049 AGCAAGGTTCTTAAGTCGTGGAT 59.992 43.478 1.63 0.00 0.00 3.41
538 3136 5.215252 AGTCGTGGATATGGAATTGGTAG 57.785 43.478 0.00 0.00 0.00 3.18
593 3196 7.827819 ATCAATATATTGGGTGATACGTTCG 57.172 36.000 22.31 0.00 38.30 3.95
705 3319 6.017440 TGCAGTTTATAGTTTCCTGTTGTCAC 60.017 38.462 0.00 0.00 0.00 3.67
706 3320 6.590357 CAGTTTATAGTTTCCTGTTGTCACG 58.410 40.000 0.00 0.00 0.00 4.35
765 3403 2.164422 TCTGAACTGAGAGTACGCCATG 59.836 50.000 0.00 0.00 0.00 3.66
767 3405 2.263077 GAACTGAGAGTACGCCATGTG 58.737 52.381 0.00 0.00 0.00 3.21
805 3443 2.289195 TGTTAACCACGAGATCCACCAC 60.289 50.000 2.48 0.00 0.00 4.16
806 3444 1.933021 TAACCACGAGATCCACCACT 58.067 50.000 0.00 0.00 0.00 4.00
807 3445 0.321671 AACCACGAGATCCACCACTG 59.678 55.000 0.00 0.00 0.00 3.66
808 3446 0.832135 ACCACGAGATCCACCACTGT 60.832 55.000 0.00 0.00 0.00 3.55
810 3448 1.548719 CCACGAGATCCACCACTGTAA 59.451 52.381 0.00 0.00 0.00 2.41
811 3449 2.168521 CCACGAGATCCACCACTGTAAT 59.831 50.000 0.00 0.00 0.00 1.89
812 3450 3.190079 CACGAGATCCACCACTGTAATG 58.810 50.000 0.00 0.00 0.00 1.90
826 3472 0.171007 GTAATGAACGGACGGACGGA 59.829 55.000 6.00 0.00 38.39 4.69
853 3551 3.665173 GCTCGTTCAGAGGCTTTATTG 57.335 47.619 0.00 0.00 46.91 1.90
854 3552 3.003480 GCTCGTTCAGAGGCTTTATTGT 58.997 45.455 0.00 0.00 46.91 2.71
933 3638 6.556495 TCTCCATTCTGTATGCTTTCTCCTAT 59.444 38.462 0.00 0.00 32.60 2.57
960 3665 5.832060 TCTTACACTTACCTCCTACTATGCC 59.168 44.000 0.00 0.00 0.00 4.40
991 3713 1.678101 GGTGTGAAGCTGAAGCACTTT 59.322 47.619 4.90 0.00 45.16 2.66
992 3714 2.542411 GGTGTGAAGCTGAAGCACTTTG 60.542 50.000 4.90 0.00 45.16 2.77
1028 3861 4.997905 TCATTTTCGAAGCAAGTCTGAG 57.002 40.909 0.00 0.00 0.00 3.35
1075 3908 1.075659 GCCTTTCCCCAGCTGAAGT 59.924 57.895 17.39 0.00 0.00 3.01
1076 3909 0.540597 GCCTTTCCCCAGCTGAAGTT 60.541 55.000 17.39 0.00 0.00 2.66
1154 3987 2.696707 TGACGAGTTTGGTCAGGTTAGT 59.303 45.455 0.00 0.00 39.36 2.24
1230 4063 1.137404 GCACCTTGCTGTATTGCGG 59.863 57.895 0.00 0.00 40.96 5.69
1253 4086 1.115326 ACCTTTTTGGGGCTCAGTGC 61.115 55.000 0.00 0.00 41.11 4.40
1270 4103 2.435586 CCACGCTGCCTGAAGAGG 60.436 66.667 0.00 0.00 43.19 3.69
1285 4118 5.080969 TGAAGAGGTAGGTAATTTGACGG 57.919 43.478 0.00 0.00 0.00 4.79
1445 4284 0.399454 ACAGAGCTGCAGACCATGTT 59.601 50.000 20.43 0.00 0.00 2.71
1542 4381 4.081642 GTGTCTACAAATCAGCTGGTAGGA 60.082 45.833 20.79 6.16 35.18 2.94
1573 4412 0.179062 CGAGCTTGGGAATAGCAGCT 60.179 55.000 0.00 0.00 45.48 4.24
1579 4418 1.583556 TGGGAATAGCAGCTTCCTGA 58.416 50.000 12.17 0.00 41.77 3.86
1581 4420 2.308570 TGGGAATAGCAGCTTCCTGAAA 59.691 45.455 12.17 0.00 41.77 2.69
1582 4421 3.053395 TGGGAATAGCAGCTTCCTGAAAT 60.053 43.478 12.17 0.00 41.77 2.17
1584 4423 4.202090 GGGAATAGCAGCTTCCTGAAATTG 60.202 45.833 12.17 0.00 41.77 2.32
1586 4425 1.553706 AGCAGCTTCCTGAAATTGGG 58.446 50.000 0.00 0.00 41.77 4.12
1588 4427 0.171903 CAGCTTCCTGAAATTGGGCG 59.828 55.000 0.00 0.00 41.77 6.13
1590 4429 0.965363 GCTTCCTGAAATTGGGCGGA 60.965 55.000 0.00 0.00 0.00 5.54
1593 4432 3.287222 CTTCCTGAAATTGGGCGGAATA 58.713 45.455 0.00 0.00 33.66 1.75
1594 4433 3.374042 TCCTGAAATTGGGCGGAATAA 57.626 42.857 0.00 0.00 0.00 1.40
1595 4434 3.287222 TCCTGAAATTGGGCGGAATAAG 58.713 45.455 0.00 0.00 0.00 1.73
1596 4435 2.223805 CCTGAAATTGGGCGGAATAAGC 60.224 50.000 0.00 0.00 0.00 3.09
1597 4436 1.403679 TGAAATTGGGCGGAATAAGCG 59.596 47.619 0.00 0.00 35.00 4.68
1598 4437 1.404035 GAAATTGGGCGGAATAAGCGT 59.596 47.619 0.00 0.00 35.00 5.07
1599 4438 2.335316 AATTGGGCGGAATAAGCGTA 57.665 45.000 0.00 0.00 35.00 4.42
1600 4439 1.878953 ATTGGGCGGAATAAGCGTAG 58.121 50.000 0.00 0.00 35.00 3.51
1693 8621 5.300286 GCTGAATACAATGGATTTACTGGCT 59.700 40.000 0.00 0.00 0.00 4.75
1698 8626 7.716799 ATACAATGGATTTACTGGCTTTCAA 57.283 32.000 0.00 0.00 0.00 2.69
1775 8703 1.747355 CATTGTTGCAGAGCTAAGGGG 59.253 52.381 0.00 0.00 0.00 4.79
1777 8705 1.002134 GTTGCAGAGCTAAGGGGCA 60.002 57.895 0.00 0.00 34.17 5.36
1778 8706 0.394899 GTTGCAGAGCTAAGGGGCAT 60.395 55.000 0.00 0.00 34.03 4.40
1808 8742 0.464870 CATCCAGGAGAGCTGACCAG 59.535 60.000 0.00 0.00 0.00 4.00
1895 8830 8.076178 CCTTTGAACTGTACTGATTTAAACCTG 58.924 37.037 6.77 0.00 0.00 4.00
2066 9001 6.669631 ACTCCTACCCAATAACCATTTTAGG 58.330 40.000 0.00 0.00 0.00 2.69
2240 9176 6.409704 CATCATACCCCACCAGATATTACAG 58.590 44.000 0.00 0.00 0.00 2.74
2331 9267 3.874392 ATTTTACTGGCATGGCAGAAC 57.126 42.857 44.89 6.74 0.00 3.01
2333 9269 1.825090 TTACTGGCATGGCAGAACAG 58.175 50.000 44.89 26.05 35.40 3.16
2334 9270 0.983467 TACTGGCATGGCAGAACAGA 59.017 50.000 44.89 25.37 33.57 3.41
2335 9271 0.111061 ACTGGCATGGCAGAACAGAA 59.889 50.000 44.89 13.40 33.57 3.02
2337 9273 1.614903 CTGGCATGGCAGAACAGAAAA 59.385 47.619 38.55 5.93 0.00 2.29
2377 9322 3.738282 CCTGATCGCAGTAGTTATCAAGC 59.262 47.826 0.00 0.00 40.63 4.01
2379 9324 4.948847 TGATCGCAGTAGTTATCAAGCAT 58.051 39.130 0.00 0.00 0.00 3.79
2576 9530 6.461092 CGGAAGACATTGGCAATCTAGTACTA 60.461 42.308 10.36 1.89 0.00 1.82
3042 10006 5.648178 ATGATGAAGTGCATTGCTTGTTA 57.352 34.783 10.49 0.00 37.34 2.41
3067 10033 2.817901 AGTAATGTTGTATCGCGTCCC 58.182 47.619 5.77 0.00 0.00 4.46
3113 10089 5.118729 TCCTTTCCTTTGTTAGTTGGACA 57.881 39.130 0.00 0.00 0.00 4.02
3120 10096 4.202010 CCTTTGTTAGTTGGACAGTTGGTG 60.202 45.833 0.00 0.00 0.00 4.17
3121 10097 2.294074 TGTTAGTTGGACAGTTGGTGC 58.706 47.619 0.00 0.00 38.51 5.01
3124 10100 4.131596 GTTAGTTGGACAGTTGGTGCTAA 58.868 43.478 0.00 0.00 38.87 3.09
3126 10102 3.626930 AGTTGGACAGTTGGTGCTAAAA 58.373 40.909 0.00 0.00 38.87 1.52
3135 10111 4.275936 CAGTTGGTGCTAAAAGTACTTGCT 59.724 41.667 9.34 2.24 31.18 3.91
3180 10173 0.602905 GTGGCGCTGAAACCTACTGT 60.603 55.000 7.64 0.00 0.00 3.55
3301 10347 1.952296 ACTTGCTGTTTTGAGCTCCTG 59.048 47.619 12.15 0.70 39.90 3.86
3345 10392 5.044179 AGTTCCTGGATAAATGTGGGAATGA 60.044 40.000 0.00 0.00 35.68 2.57
3399 10446 2.698803 TGAATGTCAATCAGTGGGTCG 58.301 47.619 0.00 0.00 0.00 4.79
3459 10506 2.200067 TGTCAATTTTGCTGGTTTGCG 58.800 42.857 0.00 0.00 35.36 4.85
3612 10659 4.063998 TGAGCATAGCATCTGAAACGAT 57.936 40.909 0.00 0.00 0.00 3.73
3828 10913 3.592427 AGTGTACAGAGTCTCCTTCCCTA 59.408 47.826 0.00 0.00 0.00 3.53
3837 10922 7.093245 ACAGAGTCTCCTTCCCTATTACTTTTC 60.093 40.741 0.00 0.00 0.00 2.29
3838 10923 6.097129 AGAGTCTCCTTCCCTATTACTTTTCG 59.903 42.308 0.00 0.00 0.00 3.46
3839 10924 5.128991 AGTCTCCTTCCCTATTACTTTTCGG 59.871 44.000 0.00 0.00 0.00 4.30
3840 10925 5.128335 GTCTCCTTCCCTATTACTTTTCGGA 59.872 44.000 0.00 0.00 0.00 4.55
3842 10927 6.214005 TCTCCTTCCCTATTACTTTTCGGAAA 59.786 38.462 0.00 0.00 0.00 3.13
3843 10928 6.965607 TCCTTCCCTATTACTTTTCGGAAAT 58.034 36.000 3.67 0.00 0.00 2.17
3844 10929 6.826741 TCCTTCCCTATTACTTTTCGGAAATG 59.173 38.462 13.09 13.09 0.00 2.32
3845 10930 6.602009 CCTTCCCTATTACTTTTCGGAAATGT 59.398 38.462 21.05 21.05 33.85 2.71
3846 10931 7.122204 CCTTCCCTATTACTTTTCGGAAATGTT 59.878 37.037 22.06 11.37 32.00 2.71
3849 10934 8.949177 TCCCTATTACTTTTCGGAAATGTTAAC 58.051 33.333 22.06 0.00 32.00 2.01
3850 10935 7.906527 CCCTATTACTTTTCGGAAATGTTAACG 59.093 37.037 22.06 11.36 32.00 3.18
3851 10936 7.427318 CCTATTACTTTTCGGAAATGTTAACGC 59.573 37.037 22.06 0.00 32.00 4.84
3852 10937 3.892522 ACTTTTCGGAAATGTTAACGCC 58.107 40.909 14.21 0.00 0.00 5.68
3853 10938 2.993449 TTTCGGAAATGTTAACGCCC 57.007 45.000 0.00 0.00 0.00 6.13
3854 10939 1.893544 TTCGGAAATGTTAACGCCCA 58.106 45.000 0.26 0.00 0.00 5.36
3855 10940 1.158434 TCGGAAATGTTAACGCCCAC 58.842 50.000 0.26 0.00 0.00 4.61
3856 10941 0.875728 CGGAAATGTTAACGCCCACA 59.124 50.000 0.26 0.00 0.00 4.17
3857 10942 1.400500 CGGAAATGTTAACGCCCACAC 60.400 52.381 0.26 0.00 0.00 3.82
3858 10943 1.068125 GGAAATGTTAACGCCCACACC 60.068 52.381 0.26 0.00 0.00 4.16
3859 10944 0.963225 AAATGTTAACGCCCACACCC 59.037 50.000 0.26 0.00 0.00 4.61
3862 10947 2.280933 TTAACGCCCACACCCGTG 60.281 61.111 0.00 0.00 43.21 4.94
3870 10955 3.959975 CACACCCGTGGGCGTTTG 61.960 66.667 4.41 0.00 39.64 2.93
3876 10961 2.480555 CGTGGGCGTTTGCAGATC 59.519 61.111 0.00 0.00 45.35 2.75
3877 10962 2.480555 GTGGGCGTTTGCAGATCG 59.519 61.111 0.00 0.00 45.35 3.69
3881 10966 3.430862 GCGTTTGCAGATCGCCCA 61.431 61.111 17.10 0.00 43.41 5.36
3882 10967 2.480555 CGTTTGCAGATCGCCCAC 59.519 61.111 7.00 3.64 41.33 4.61
3883 10968 2.324330 CGTTTGCAGATCGCCCACA 61.324 57.895 7.00 0.00 41.33 4.17
3884 10969 1.210155 GTTTGCAGATCGCCCACAC 59.790 57.895 7.00 0.00 41.33 3.82
3888 10973 4.457496 CAGATCGCCCACACGCCT 62.457 66.667 0.00 0.00 0.00 5.52
3889 10974 4.148825 AGATCGCCCACACGCCTC 62.149 66.667 0.00 0.00 0.00 4.70
3902 10987 4.101448 GCCTCCGCCACCACTCAT 62.101 66.667 0.00 0.00 0.00 2.90
3903 10988 2.671070 CCTCCGCCACCACTCATT 59.329 61.111 0.00 0.00 0.00 2.57
3904 10989 1.002134 CCTCCGCCACCACTCATTT 60.002 57.895 0.00 0.00 0.00 2.32
3905 10990 0.609131 CCTCCGCCACCACTCATTTT 60.609 55.000 0.00 0.00 0.00 1.82
3906 10991 0.523072 CTCCGCCACCACTCATTTTG 59.477 55.000 0.00 0.00 0.00 2.44
3907 10992 1.080569 CCGCCACCACTCATTTTGC 60.081 57.895 0.00 0.00 0.00 3.68
3908 10993 1.080569 CGCCACCACTCATTTTGCC 60.081 57.895 0.00 0.00 0.00 4.52
3909 10994 1.804396 CGCCACCACTCATTTTGCCA 61.804 55.000 0.00 0.00 0.00 4.92
3910 10995 0.319813 GCCACCACTCATTTTGCCAC 60.320 55.000 0.00 0.00 0.00 5.01
3911 10996 0.039256 CCACCACTCATTTTGCCACG 60.039 55.000 0.00 0.00 0.00 4.94
3912 10997 0.667993 CACCACTCATTTTGCCACGT 59.332 50.000 0.00 0.00 0.00 4.49
3914 10999 2.487762 CACCACTCATTTTGCCACGTAT 59.512 45.455 0.00 0.00 0.00 3.06
3915 11000 2.487762 ACCACTCATTTTGCCACGTATG 59.512 45.455 0.00 0.00 0.00 2.39
3917 11002 3.190327 CCACTCATTTTGCCACGTATGAA 59.810 43.478 0.00 0.00 0.00 2.57
3920 11005 5.965334 CACTCATTTTGCCACGTATGAATAC 59.035 40.000 0.00 0.00 0.00 1.89
3922 11007 6.318648 ACTCATTTTGCCACGTATGAATACAT 59.681 34.615 0.00 0.00 40.16 2.29
3923 11008 6.493978 TCATTTTGCCACGTATGAATACATG 58.506 36.000 0.00 0.00 37.87 3.21
3924 11009 6.317391 TCATTTTGCCACGTATGAATACATGA 59.683 34.615 0.00 0.00 37.87 3.07
3927 11012 4.702831 TGCCACGTATGAATACATGACAT 58.297 39.130 0.00 2.44 37.87 3.06
3928 11013 4.749598 TGCCACGTATGAATACATGACATC 59.250 41.667 0.00 0.00 37.87 3.06
3929 11014 4.749598 GCCACGTATGAATACATGACATCA 59.250 41.667 0.00 0.27 37.87 3.07
3931 11016 5.107337 CCACGTATGAATACATGACATCAGC 60.107 44.000 0.00 0.00 37.87 4.26
3932 11017 5.463061 CACGTATGAATACATGACATCAGCA 59.537 40.000 0.00 0.00 37.87 4.41
3933 11018 5.693555 ACGTATGAATACATGACATCAGCAG 59.306 40.000 0.00 0.00 37.87 4.24
3934 11019 5.922544 CGTATGAATACATGACATCAGCAGA 59.077 40.000 0.00 0.00 37.87 4.26
3935 11020 6.421801 CGTATGAATACATGACATCAGCAGAA 59.578 38.462 0.00 0.00 37.87 3.02
3936 11021 7.042523 CGTATGAATACATGACATCAGCAGAAA 60.043 37.037 0.00 0.00 37.87 2.52
3938 11023 7.255491 TGAATACATGACATCAGCAGAAATC 57.745 36.000 0.00 0.00 0.00 2.17
3939 11024 7.052248 TGAATACATGACATCAGCAGAAATCT 58.948 34.615 0.00 0.00 0.00 2.40
3940 11025 7.555195 TGAATACATGACATCAGCAGAAATCTT 59.445 33.333 0.00 0.00 0.00 2.40
3944 11029 6.866770 ACATGACATCAGCAGAAATCTTTTTG 59.133 34.615 0.00 0.00 0.00 2.44
3945 11030 5.775686 TGACATCAGCAGAAATCTTTTTGG 58.224 37.500 0.00 0.00 0.00 3.28
3946 11031 5.302568 TGACATCAGCAGAAATCTTTTTGGT 59.697 36.000 0.00 0.00 33.95 3.67
3948 11033 6.585416 ACATCAGCAGAAATCTTTTTGGTTT 58.415 32.000 0.00 0.00 31.72 3.27
3951 11036 7.306205 TCAGCAGAAATCTTTTTGGTTTTTG 57.694 32.000 0.00 0.00 31.72 2.44
3952 11037 6.315891 TCAGCAGAAATCTTTTTGGTTTTTGG 59.684 34.615 0.00 0.00 31.72 3.28
3953 11038 5.066375 AGCAGAAATCTTTTTGGTTTTTGGC 59.934 36.000 0.00 0.00 30.12 4.52
3954 11039 5.066375 GCAGAAATCTTTTTGGTTTTTGGCT 59.934 36.000 0.00 0.00 0.00 4.75
3957 11042 8.672815 CAGAAATCTTTTTGGTTTTTGGCTTAA 58.327 29.630 0.00 0.00 0.00 1.85
3959 11044 9.847706 GAAATCTTTTTGGTTTTTGGCTTAAAA 57.152 25.926 0.00 0.00 36.51 1.52
3962 11047 9.800433 ATCTTTTTGGTTTTTGGCTTAAAAATG 57.200 25.926 12.79 0.00 46.56 2.32
3963 11048 8.797438 TCTTTTTGGTTTTTGGCTTAAAAATGT 58.203 25.926 12.79 0.00 46.56 2.71
3964 11049 9.416794 CTTTTTGGTTTTTGGCTTAAAAATGTT 57.583 25.926 12.79 0.00 46.56 2.71
3965 11050 9.764363 TTTTTGGTTTTTGGCTTAAAAATGTTT 57.236 22.222 12.79 0.00 46.56 2.83
4005 11090 8.989653 AAAAGTGAACTAAAAATCCGTTTTCA 57.010 26.923 0.00 0.00 40.07 2.69
4006 11091 7.980742 AAGTGAACTAAAAATCCGTTTTCAC 57.019 32.000 0.00 0.00 40.07 3.18
4007 11092 6.500910 AGTGAACTAAAAATCCGTTTTCACC 58.499 36.000 7.71 0.00 40.07 4.02
4008 11093 6.095720 AGTGAACTAAAAATCCGTTTTCACCA 59.904 34.615 7.71 0.00 40.07 4.17
4009 11094 6.921307 GTGAACTAAAAATCCGTTTTCACCAT 59.079 34.615 0.00 0.00 40.07 3.55
4010 11095 7.436970 GTGAACTAAAAATCCGTTTTCACCATT 59.563 33.333 0.00 0.00 40.07 3.16
4011 11096 8.630917 TGAACTAAAAATCCGTTTTCACCATTA 58.369 29.630 0.00 0.00 40.07 1.90
4012 11097 9.465985 GAACTAAAAATCCGTTTTCACCATTAA 57.534 29.630 0.00 0.00 40.07 1.40
4016 11101 7.899178 AAAATCCGTTTTCACCATTAAATCC 57.101 32.000 0.00 0.00 32.14 3.01
4017 11102 4.688511 TCCGTTTTCACCATTAAATCCG 57.311 40.909 0.00 0.00 0.00 4.18
4020 11105 4.155280 CCGTTTTCACCATTAAATCCGTCT 59.845 41.667 0.00 0.00 0.00 4.18
4021 11106 5.321516 CGTTTTCACCATTAAATCCGTCTC 58.678 41.667 0.00 0.00 0.00 3.36
4022 11107 5.321516 GTTTTCACCATTAAATCCGTCTCG 58.678 41.667 0.00 0.00 0.00 4.04
4023 11108 4.459390 TTCACCATTAAATCCGTCTCGA 57.541 40.909 0.00 0.00 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 2130 2.987413 TTGCAAGCAATACCAGTTCG 57.013 45.000 2.89 0.00 0.00 3.95
23 2137 6.532657 AGCAGTGATTTATTTGCAAGCAATAC 59.467 34.615 8.46 0.00 38.97 1.89
30 2144 4.925054 GCAGAAGCAGTGATTTATTTGCAA 59.075 37.500 12.72 0.00 41.58 4.08
88 2202 0.179089 CTCCTGCTGGTCAAGATCCG 60.179 60.000 9.73 0.00 34.23 4.18
101 2215 3.735746 CGGAAAACAACAAATTCTCCTGC 59.264 43.478 0.00 0.00 0.00 4.85
112 2226 8.105097 TGATCTTTGATAATCGGAAAACAACA 57.895 30.769 0.00 0.00 0.00 3.33
113 2227 8.964420 TTGATCTTTGATAATCGGAAAACAAC 57.036 30.769 0.00 0.00 0.00 3.32
193 2308 7.103641 ACTGTAAAATGACCATAGGTAGTGTG 58.896 38.462 0.00 0.00 35.25 3.82
194 2309 7.253905 ACTGTAAAATGACCATAGGTAGTGT 57.746 36.000 0.00 0.00 35.25 3.55
200 2746 7.931578 TTTGGTACTGTAAAATGACCATAGG 57.068 36.000 0.00 0.00 39.83 2.57
214 2798 7.754851 ACTTCCGAAAAATATTTGGTACTGT 57.245 32.000 0.39 0.00 0.00 3.55
264 2856 9.594478 GAACAAAGGACAAAAAGGAGAAAAATA 57.406 29.630 0.00 0.00 0.00 1.40
270 2862 5.125417 CACAGAACAAAGGACAAAAAGGAGA 59.875 40.000 0.00 0.00 0.00 3.71
287 2879 2.639286 CGCTTGTGCCCACAGAAC 59.361 61.111 1.02 0.00 42.94 3.01
296 2888 4.060038 ATTGGCAGCCGCTTGTGC 62.060 61.111 7.03 0.00 38.60 4.57
300 2892 3.072486 GCATCATTGGCAGCCGCTT 62.072 57.895 7.03 0.00 38.60 4.68
320 2914 1.813477 GCCTCCTAGAGCAGCAATTCC 60.813 57.143 0.00 0.00 0.00 3.01
353 2947 7.321717 AGCTACCAATTCCATATACATGACT 57.678 36.000 0.00 0.00 33.67 3.41
354 2948 7.986085 AAGCTACCAATTCCATATACATGAC 57.014 36.000 0.00 0.00 33.67 3.06
365 2963 7.094377 TGTTGAAGACAATAAGCTACCAATTCC 60.094 37.037 0.00 0.00 38.32 3.01
366 2964 7.816640 TGTTGAAGACAATAAGCTACCAATTC 58.183 34.615 0.00 0.00 38.32 2.17
367 2965 7.759489 TGTTGAAGACAATAAGCTACCAATT 57.241 32.000 0.00 0.00 38.32 2.32
368 2966 7.944729 ATGTTGAAGACAATAAGCTACCAAT 57.055 32.000 0.00 0.00 42.62 3.16
389 2987 9.004231 ACATTTAGGAAAAGAGGGAGTATATGT 57.996 33.333 0.00 0.00 0.00 2.29
395 2993 7.017254 TGACTTACATTTAGGAAAAGAGGGAGT 59.983 37.037 0.00 0.00 0.00 3.85
396 2994 7.394816 TGACTTACATTTAGGAAAAGAGGGAG 58.605 38.462 0.00 0.00 0.00 4.30
398 2996 8.581253 AATGACTTACATTTAGGAAAAGAGGG 57.419 34.615 0.00 0.00 45.60 4.30
426 3024 9.179909 CCGTATGTAGTCTATATTGGAATCTCT 57.820 37.037 0.00 0.00 0.00 3.10
427 3025 9.175312 TCCGTATGTAGTCTATATTGGAATCTC 57.825 37.037 7.43 0.00 0.00 2.75
428 3026 9.529823 TTCCGTATGTAGTCTATATTGGAATCT 57.470 33.333 14.08 0.00 29.76 2.40
429 3027 9.570488 GTTCCGTATGTAGTCTATATTGGAATC 57.430 37.037 18.01 12.02 33.69 2.52
430 3028 9.085645 TGTTCCGTATGTAGTCTATATTGGAAT 57.914 33.333 18.01 0.00 33.69 3.01
431 3029 8.467963 TGTTCCGTATGTAGTCTATATTGGAA 57.532 34.615 14.08 14.08 31.05 3.53
432 3030 8.467963 TTGTTCCGTATGTAGTCTATATTGGA 57.532 34.615 6.31 6.31 0.00 3.53
433 3031 8.975439 GTTTGTTCCGTATGTAGTCTATATTGG 58.025 37.037 0.00 0.00 0.00 3.16
434 3032 9.745880 AGTTTGTTCCGTATGTAGTCTATATTG 57.254 33.333 0.00 0.00 0.00 1.90
435 3033 9.745880 CAGTTTGTTCCGTATGTAGTCTATATT 57.254 33.333 0.00 0.00 0.00 1.28
436 3034 9.128404 TCAGTTTGTTCCGTATGTAGTCTATAT 57.872 33.333 0.00 0.00 0.00 0.86
437 3035 8.510243 TCAGTTTGTTCCGTATGTAGTCTATA 57.490 34.615 0.00 0.00 0.00 1.31
438 3036 7.122353 ACTCAGTTTGTTCCGTATGTAGTCTAT 59.878 37.037 0.00 0.00 0.00 1.98
439 3037 6.432162 ACTCAGTTTGTTCCGTATGTAGTCTA 59.568 38.462 0.00 0.00 0.00 2.59
440 3038 5.243283 ACTCAGTTTGTTCCGTATGTAGTCT 59.757 40.000 0.00 0.00 0.00 3.24
441 3039 5.467705 ACTCAGTTTGTTCCGTATGTAGTC 58.532 41.667 0.00 0.00 0.00 2.59
442 3040 5.464030 ACTCAGTTTGTTCCGTATGTAGT 57.536 39.130 0.00 0.00 0.00 2.73
443 3041 7.878477 TTTACTCAGTTTGTTCCGTATGTAG 57.122 36.000 0.00 0.00 0.00 2.74
444 3042 8.308931 AGATTTACTCAGTTTGTTCCGTATGTA 58.691 33.333 0.00 0.00 0.00 2.29
445 3043 7.159372 AGATTTACTCAGTTTGTTCCGTATGT 58.841 34.615 0.00 0.00 0.00 2.29
446 3044 7.596749 AGATTTACTCAGTTTGTTCCGTATG 57.403 36.000 0.00 0.00 0.00 2.39
447 3045 8.308931 TGTAGATTTACTCAGTTTGTTCCGTAT 58.691 33.333 0.00 0.00 0.00 3.06
448 3046 7.660112 TGTAGATTTACTCAGTTTGTTCCGTA 58.340 34.615 0.00 0.00 0.00 4.02
449 3047 6.518493 TGTAGATTTACTCAGTTTGTTCCGT 58.482 36.000 0.00 0.00 0.00 4.69
450 3048 6.645415 ACTGTAGATTTACTCAGTTTGTTCCG 59.355 38.462 0.00 0.00 35.29 4.30
451 3049 7.873505 AGACTGTAGATTTACTCAGTTTGTTCC 59.126 37.037 0.00 0.00 37.23 3.62
452 3050 8.819643 AGACTGTAGATTTACTCAGTTTGTTC 57.180 34.615 0.00 0.00 37.23 3.18
472 3070 9.557338 GCCTATACGTAGTCATATTTTAGACTG 57.443 37.037 0.08 0.00 44.32 3.51
473 3071 9.517868 AGCCTATACGTAGTCATATTTTAGACT 57.482 33.333 0.08 0.00 43.93 3.24
477 3075 9.964354 TCCTAGCCTATACGTAGTCATATTTTA 57.036 33.333 0.08 0.00 43.93 1.52
478 3076 8.874744 TCCTAGCCTATACGTAGTCATATTTT 57.125 34.615 0.08 0.00 43.93 1.82
479 3077 7.067251 GCTCCTAGCCTATACGTAGTCATATTT 59.933 40.741 0.08 0.00 37.29 1.40
480 3078 6.543100 GCTCCTAGCCTATACGTAGTCATATT 59.457 42.308 0.08 0.00 37.29 1.28
481 3079 6.056884 GCTCCTAGCCTATACGTAGTCATAT 58.943 44.000 0.08 0.00 37.29 1.78
482 3080 5.046087 TGCTCCTAGCCTATACGTAGTCATA 60.046 44.000 0.08 0.00 40.14 2.15
483 3081 4.263374 TGCTCCTAGCCTATACGTAGTCAT 60.263 45.833 0.08 0.00 40.14 3.06
484 3082 3.072038 TGCTCCTAGCCTATACGTAGTCA 59.928 47.826 0.08 0.00 40.14 3.41
485 3083 3.672808 TGCTCCTAGCCTATACGTAGTC 58.327 50.000 0.08 0.00 40.14 2.59
486 3084 3.784511 TGCTCCTAGCCTATACGTAGT 57.215 47.619 0.08 0.00 43.11 2.73
487 3085 3.440872 CCTTGCTCCTAGCCTATACGTAG 59.559 52.174 0.08 0.00 41.51 3.51
488 3086 3.181436 ACCTTGCTCCTAGCCTATACGTA 60.181 47.826 0.00 0.00 41.51 3.57
489 3087 2.240279 CCTTGCTCCTAGCCTATACGT 58.760 52.381 0.00 0.00 41.51 3.57
490 3088 2.240279 ACCTTGCTCCTAGCCTATACG 58.760 52.381 0.00 0.00 41.51 3.06
491 3089 3.898741 AGAACCTTGCTCCTAGCCTATAC 59.101 47.826 0.00 0.00 41.51 1.47
492 3090 4.200447 AGAACCTTGCTCCTAGCCTATA 57.800 45.455 0.00 0.00 41.51 1.31
493 3091 3.053359 AGAACCTTGCTCCTAGCCTAT 57.947 47.619 0.00 0.00 41.51 2.57
494 3092 2.552093 AGAACCTTGCTCCTAGCCTA 57.448 50.000 0.00 0.00 41.51 3.93
495 3093 1.662686 AAGAACCTTGCTCCTAGCCT 58.337 50.000 0.00 0.00 41.51 4.58
496 3094 3.055021 ACTTAAGAACCTTGCTCCTAGCC 60.055 47.826 10.09 0.00 41.51 3.93
497 3095 4.185394 GACTTAAGAACCTTGCTCCTAGC 58.815 47.826 10.09 0.00 42.82 3.42
498 3096 4.082136 ACGACTTAAGAACCTTGCTCCTAG 60.082 45.833 10.09 0.00 0.00 3.02
499 3097 3.830755 ACGACTTAAGAACCTTGCTCCTA 59.169 43.478 10.09 0.00 0.00 2.94
500 3098 2.633481 ACGACTTAAGAACCTTGCTCCT 59.367 45.455 10.09 0.00 0.00 3.69
501 3099 2.737252 CACGACTTAAGAACCTTGCTCC 59.263 50.000 10.09 0.00 0.00 4.70
502 3100 2.737252 CCACGACTTAAGAACCTTGCTC 59.263 50.000 10.09 0.00 0.00 4.26
503 3101 2.367567 TCCACGACTTAAGAACCTTGCT 59.632 45.455 10.09 0.00 0.00 3.91
504 3102 2.762745 TCCACGACTTAAGAACCTTGC 58.237 47.619 10.09 0.00 0.00 4.01
505 3103 5.523916 CCATATCCACGACTTAAGAACCTTG 59.476 44.000 10.09 2.21 0.00 3.61
506 3104 5.424252 TCCATATCCACGACTTAAGAACCTT 59.576 40.000 10.09 0.00 0.00 3.50
507 3105 4.960469 TCCATATCCACGACTTAAGAACCT 59.040 41.667 10.09 0.00 0.00 3.50
508 3106 5.272283 TCCATATCCACGACTTAAGAACC 57.728 43.478 10.09 0.00 0.00 3.62
509 3107 7.254795 CCAATTCCATATCCACGACTTAAGAAC 60.255 40.741 10.09 2.05 0.00 3.01
510 3108 6.765989 CCAATTCCATATCCACGACTTAAGAA 59.234 38.462 10.09 0.00 0.00 2.52
511 3109 6.126883 ACCAATTCCATATCCACGACTTAAGA 60.127 38.462 10.09 0.00 0.00 2.10
512 3110 6.055588 ACCAATTCCATATCCACGACTTAAG 58.944 40.000 0.00 0.00 0.00 1.85
513 3111 5.996644 ACCAATTCCATATCCACGACTTAA 58.003 37.500 0.00 0.00 0.00 1.85
517 3115 3.746492 GCTACCAATTCCATATCCACGAC 59.254 47.826 0.00 0.00 0.00 4.34
525 3123 8.271458 TGAAGACAATAAGCTACCAATTCCATA 58.729 33.333 0.00 0.00 0.00 2.74
590 3193 9.706691 AATAACTTTTGAACTCTGATACTCGAA 57.293 29.630 0.00 0.00 0.00 3.71
688 3302 2.290071 CCCCGTGACAACAGGAAACTAT 60.290 50.000 0.00 0.00 40.21 2.12
705 3319 3.244422 TGCTAGCATTTTATAGTCCCCCG 60.244 47.826 14.93 0.00 0.00 5.73
706 3320 4.367039 TGCTAGCATTTTATAGTCCCCC 57.633 45.455 14.93 0.00 0.00 5.40
805 3443 1.265568 CGTCCGTCCGTTCATTACAG 58.734 55.000 0.00 0.00 0.00 2.74
806 3444 0.109179 CCGTCCGTCCGTTCATTACA 60.109 55.000 0.00 0.00 0.00 2.41
807 3445 0.171007 TCCGTCCGTCCGTTCATTAC 59.829 55.000 0.00 0.00 0.00 1.89
808 3446 0.171007 GTCCGTCCGTCCGTTCATTA 59.829 55.000 0.00 0.00 0.00 1.90
810 3448 2.570181 GTCCGTCCGTCCGTTCAT 59.430 61.111 0.00 0.00 0.00 2.57
811 3449 4.029186 CGTCCGTCCGTCCGTTCA 62.029 66.667 0.00 0.00 0.00 3.18
812 3450 4.766088 CCGTCCGTCCGTCCGTTC 62.766 72.222 0.00 0.00 0.00 3.95
826 3472 3.288308 CTCTGAACGAGCCAGCCGT 62.288 63.158 0.00 1.15 42.61 5.68
852 3550 0.970427 TCACTGCCGCAGAGGATACA 60.970 55.000 27.12 0.00 45.00 2.29
853 3551 0.175760 TTCACTGCCGCAGAGGATAC 59.824 55.000 27.12 0.00 45.00 2.24
854 3552 0.461548 CTTCACTGCCGCAGAGGATA 59.538 55.000 27.12 12.27 45.00 2.59
933 3638 7.284944 GCATAGTAGGAGGTAAGTGTAAGAGAA 59.715 40.741 0.00 0.00 0.00 2.87
992 3714 1.108776 AATGATGTGCATCCACCTGC 58.891 50.000 9.39 0.00 41.35 4.85
995 3828 2.423185 TCGAAAATGATGTGCATCCACC 59.577 45.455 9.39 0.00 41.35 4.61
996 3829 3.763097 TCGAAAATGATGTGCATCCAC 57.237 42.857 9.39 0.00 42.40 4.02
997 3830 3.427909 GCTTCGAAAATGATGTGCATCCA 60.428 43.478 9.39 0.00 35.78 3.41
1000 3833 3.853831 TGCTTCGAAAATGATGTGCAT 57.146 38.095 0.00 0.00 39.43 3.96
1001 3834 3.004629 ACTTGCTTCGAAAATGATGTGCA 59.995 39.130 0.00 0.00 0.00 4.57
1004 3837 4.756642 TCAGACTTGCTTCGAAAATGATGT 59.243 37.500 0.00 0.00 0.00 3.06
1028 3861 0.582005 GAACTCGTCAAGTGTGCCAC 59.418 55.000 0.00 0.00 38.58 5.01
1075 3908 2.557056 CAGTGTCGGACAGGTAGAGAAA 59.443 50.000 11.83 0.00 0.00 2.52
1076 3909 2.160205 CAGTGTCGGACAGGTAGAGAA 58.840 52.381 11.83 0.00 0.00 2.87
1152 3985 2.610438 ATGGGTTGCTGGAAATCACT 57.390 45.000 0.00 0.00 0.00 3.41
1154 3987 5.022122 TCAAATATGGGTTGCTGGAAATCA 58.978 37.500 0.00 0.00 0.00 2.57
1225 4058 0.676736 CCCAAAAAGGTTAGCCGCAA 59.323 50.000 0.00 0.00 40.50 4.85
1230 4063 1.546029 CTGAGCCCCAAAAAGGTTAGC 59.454 52.381 0.00 0.00 34.66 3.09
1253 4086 1.888436 TACCTCTTCAGGCAGCGTGG 61.888 60.000 15.01 1.14 45.05 4.94
1270 4103 2.681344 CCAAGGCCGTCAAATTACCTAC 59.319 50.000 0.00 0.00 0.00 3.18
1278 4111 0.035439 GATCCTCCAAGGCCGTCAAA 60.035 55.000 0.00 0.00 34.61 2.69
1285 4118 3.574354 AAGATTGAGATCCTCCAAGGC 57.426 47.619 0.00 0.00 34.61 4.35
1445 4284 6.431722 CCTTCCAAATAATTACCCTGAAGGA 58.568 40.000 20.59 7.00 46.71 3.36
1511 4350 5.413833 AGCTGATTTGTAGACACATCCAAAG 59.586 40.000 6.39 0.17 33.36 2.77
1519 4358 4.081642 TCCTACCAGCTGATTTGTAGACAC 60.082 45.833 22.21 0.00 34.04 3.67
1524 4363 3.580895 TGTGTCCTACCAGCTGATTTGTA 59.419 43.478 17.39 7.84 0.00 2.41
1526 4365 3.057969 TGTGTCCTACCAGCTGATTTG 57.942 47.619 17.39 0.00 0.00 2.32
1542 4381 0.036010 CAAGCTCGGGGAAGATGTGT 60.036 55.000 0.00 0.00 0.00 3.72
1573 4412 2.230130 ATTCCGCCCAATTTCAGGAA 57.770 45.000 0.00 0.00 43.98 3.36
1579 4418 1.470051 ACGCTTATTCCGCCCAATTT 58.530 45.000 0.00 0.00 0.00 1.82
1581 4420 1.878953 CTACGCTTATTCCGCCCAAT 58.121 50.000 0.00 0.00 0.00 3.16
1582 4421 0.812412 GCTACGCTTATTCCGCCCAA 60.812 55.000 0.00 0.00 0.00 4.12
1584 4423 2.308039 CGCTACGCTTATTCCGCCC 61.308 63.158 0.00 0.00 0.00 6.13
1586 4425 1.694639 ATACGCTACGCTTATTCCGC 58.305 50.000 0.00 0.00 0.00 5.54
1588 4427 5.689068 AGTTGTTATACGCTACGCTTATTCC 59.311 40.000 0.00 0.00 0.00 3.01
1590 4429 6.976925 AGAAGTTGTTATACGCTACGCTTATT 59.023 34.615 0.00 0.00 0.00 1.40
1593 4432 4.741342 AGAAGTTGTTATACGCTACGCTT 58.259 39.130 0.00 0.00 0.00 4.68
1594 4433 4.096081 AGAGAAGTTGTTATACGCTACGCT 59.904 41.667 0.00 0.00 0.00 5.07
1595 4434 4.204573 CAGAGAAGTTGTTATACGCTACGC 59.795 45.833 0.00 0.00 0.00 4.42
1596 4435 4.733887 CCAGAGAAGTTGTTATACGCTACG 59.266 45.833 0.00 0.00 0.00 3.51
1597 4436 5.041940 CCCAGAGAAGTTGTTATACGCTAC 58.958 45.833 0.00 0.00 0.00 3.58
1598 4437 4.951715 TCCCAGAGAAGTTGTTATACGCTA 59.048 41.667 0.00 0.00 0.00 4.26
1599 4438 3.767673 TCCCAGAGAAGTTGTTATACGCT 59.232 43.478 0.00 0.00 0.00 5.07
1600 4439 4.119442 TCCCAGAGAAGTTGTTATACGC 57.881 45.455 0.00 0.00 0.00 4.42
1601 4440 5.661458 ACATCCCAGAGAAGTTGTTATACG 58.339 41.667 0.00 0.00 0.00 3.06
1602 4441 6.539103 GGAACATCCCAGAGAAGTTGTTATAC 59.461 42.308 0.00 0.00 36.56 1.47
1603 4442 6.650120 GGAACATCCCAGAGAAGTTGTTATA 58.350 40.000 0.00 0.00 36.56 0.98
1605 4444 4.906618 GGAACATCCCAGAGAAGTTGTTA 58.093 43.478 0.00 0.00 36.56 2.41
1693 8621 5.104982 AGTTTTGAAAGGCCTGATGTTGAAA 60.105 36.000 5.69 0.00 0.00 2.69
1698 8626 2.036346 GCAGTTTTGAAAGGCCTGATGT 59.964 45.455 5.69 0.00 0.00 3.06
1775 8703 3.696051 TCCTGGATGCTCACTAAAAATGC 59.304 43.478 0.00 0.00 0.00 3.56
1777 8705 5.435291 CTCTCCTGGATGCTCACTAAAAAT 58.565 41.667 0.00 0.00 0.00 1.82
1778 8706 4.836825 CTCTCCTGGATGCTCACTAAAAA 58.163 43.478 0.00 0.00 0.00 1.94
1808 8742 2.751259 TGATTCTGACTGAAAGCCATGC 59.249 45.455 0.00 0.00 38.29 4.06
1895 8830 4.372656 AGGCATTGTTCGATAAGTCTAGC 58.627 43.478 0.00 0.00 0.00 3.42
2049 8984 4.897076 GGTACCCCTAAAATGGTTATTGGG 59.103 45.833 0.00 0.00 36.04 4.12
2080 9015 4.684242 GGTTTTTGCATTTCTTAAGACCCG 59.316 41.667 4.18 0.00 0.00 5.28
2240 9176 2.109425 ATACCTGGAGTTTGCGGAAC 57.891 50.000 0.00 0.00 38.58 3.62
2331 9267 4.552166 ATGTGGAGTCAACGTTTTTCTG 57.448 40.909 0.00 0.00 0.00 3.02
2333 9269 4.319984 GGGTATGTGGAGTCAACGTTTTTC 60.320 45.833 0.00 0.00 0.00 2.29
2334 9270 3.566742 GGGTATGTGGAGTCAACGTTTTT 59.433 43.478 0.00 0.00 0.00 1.94
2335 9271 3.143728 GGGTATGTGGAGTCAACGTTTT 58.856 45.455 0.00 0.00 0.00 2.43
2337 9273 1.975680 AGGGTATGTGGAGTCAACGTT 59.024 47.619 0.00 0.00 0.00 3.99
2537 9491 1.757118 TCTTCCGGAATACAGCCTGAG 59.243 52.381 19.21 1.19 0.00 3.35
2576 9530 2.989571 AGAAAGGTCCAAGGATTCCAGT 59.010 45.455 5.29 0.00 0.00 4.00
2840 9797 0.729116 CCACGAAGCAATACAGCCAG 59.271 55.000 0.00 0.00 34.23 4.85
3042 10006 5.006358 GGACGCGATACAACATTACTTCAAT 59.994 40.000 15.93 0.00 0.00 2.57
3067 10033 8.171196 GGAAATATTACACACATGCTCGATATG 58.829 37.037 7.92 7.92 0.00 1.78
3113 10089 4.461198 AGCAAGTACTTTTAGCACCAACT 58.539 39.130 16.20 0.00 0.00 3.16
3120 10096 8.488651 TCCAATTACTAGCAAGTACTTTTAGC 57.511 34.615 17.76 13.57 37.94 3.09
3124 10100 8.863872 AACATCCAATTACTAGCAAGTACTTT 57.136 30.769 5.07 0.00 37.94 2.66
3180 10173 7.725251 AGCTACCAAACAATCAAATCTGAAAA 58.275 30.769 0.00 0.00 34.49 2.29
3301 10347 1.220817 CCACAAAATGGCGGCACAAC 61.221 55.000 16.34 0.00 43.24 3.32
3459 10506 4.201647 CGCTTTGGTTGATCAAATTGATGC 60.202 41.667 13.82 6.87 37.20 3.91
3779 10846 3.801638 GCAGTATATGAGGTGTGGCAGAG 60.802 52.174 0.00 0.00 0.00 3.35
3828 10913 6.088173 GGCGTTAACATTTCCGAAAAGTAAT 58.912 36.000 6.39 0.00 0.00 1.89
3837 10922 0.875728 TGTGGGCGTTAACATTTCCG 59.124 50.000 6.39 0.00 0.00 4.30
3838 10923 1.068125 GGTGTGGGCGTTAACATTTCC 60.068 52.381 6.39 1.91 0.00 3.13
3839 10924 1.068125 GGGTGTGGGCGTTAACATTTC 60.068 52.381 6.39 0.00 0.00 2.17
3840 10925 0.963225 GGGTGTGGGCGTTAACATTT 59.037 50.000 6.39 0.00 0.00 2.32
3842 10927 1.673009 CGGGTGTGGGCGTTAACAT 60.673 57.895 6.39 0.00 0.00 2.71
3843 10928 2.280933 CGGGTGTGGGCGTTAACA 60.281 61.111 6.39 0.00 0.00 2.41
3844 10929 2.281002 ACGGGTGTGGGCGTTAAC 60.281 61.111 0.00 0.00 0.00 2.01
3845 10930 2.280933 CACGGGTGTGGGCGTTAA 60.281 61.111 0.00 0.00 42.59 2.01
3858 10943 3.039202 GATCTGCAAACGCCCACGG 62.039 63.158 0.00 0.00 46.04 4.94
3886 10971 0.609131 AAAATGAGTGGTGGCGGAGG 60.609 55.000 0.00 0.00 0.00 4.30
3887 10972 0.523072 CAAAATGAGTGGTGGCGGAG 59.477 55.000 0.00 0.00 0.00 4.63
3888 10973 1.523154 GCAAAATGAGTGGTGGCGGA 61.523 55.000 0.00 0.00 0.00 5.54
3889 10974 1.080569 GCAAAATGAGTGGTGGCGG 60.081 57.895 0.00 0.00 0.00 6.13
3890 10975 1.080569 GGCAAAATGAGTGGTGGCG 60.081 57.895 0.00 0.00 0.00 5.69
3891 10976 0.319813 GTGGCAAAATGAGTGGTGGC 60.320 55.000 0.00 0.00 37.09 5.01
3892 10977 0.039256 CGTGGCAAAATGAGTGGTGG 60.039 55.000 0.00 0.00 0.00 4.61
3893 10978 0.667993 ACGTGGCAAAATGAGTGGTG 59.332 50.000 0.00 0.00 0.00 4.17
3894 10979 2.264005 TACGTGGCAAAATGAGTGGT 57.736 45.000 0.00 0.00 0.00 4.16
3895 10980 2.746904 TCATACGTGGCAAAATGAGTGG 59.253 45.455 0.00 0.00 0.00 4.00
3896 10981 4.418013 TTCATACGTGGCAAAATGAGTG 57.582 40.909 0.00 0.00 30.53 3.51
3897 10982 5.645929 TGTATTCATACGTGGCAAAATGAGT 59.354 36.000 0.00 0.00 36.06 3.41
3898 10983 6.117911 TGTATTCATACGTGGCAAAATGAG 57.882 37.500 0.00 0.00 36.06 2.90
3900 10985 6.493978 TCATGTATTCATACGTGGCAAAATG 58.506 36.000 15.96 0.00 45.70 2.32
3901 10986 6.691754 TCATGTATTCATACGTGGCAAAAT 57.308 33.333 15.96 0.00 45.70 1.82
3907 10992 5.107337 GCTGATGTCATGTATTCATACGTGG 60.107 44.000 15.96 3.92 45.70 4.94
3908 10993 5.463061 TGCTGATGTCATGTATTCATACGTG 59.537 40.000 11.53 11.53 46.56 4.49
3909 10994 5.600696 TGCTGATGTCATGTATTCATACGT 58.399 37.500 0.00 0.00 36.06 3.57
3910 10995 5.922544 TCTGCTGATGTCATGTATTCATACG 59.077 40.000 0.00 0.00 36.06 3.06
3911 10996 7.719778 TTCTGCTGATGTCATGTATTCATAC 57.280 36.000 0.00 0.00 32.47 2.39
3912 10997 8.913487 ATTTCTGCTGATGTCATGTATTCATA 57.087 30.769 0.00 0.00 32.47 2.15
3914 10999 7.052248 AGATTTCTGCTGATGTCATGTATTCA 58.948 34.615 0.00 0.00 0.00 2.57
3915 11000 7.493743 AGATTTCTGCTGATGTCATGTATTC 57.506 36.000 0.00 0.00 0.00 1.75
3917 11002 7.876936 AAAGATTTCTGCTGATGTCATGTAT 57.123 32.000 0.00 0.00 0.00 2.29
3920 11005 6.310467 CCAAAAAGATTTCTGCTGATGTCATG 59.690 38.462 0.00 0.00 0.00 3.07
3922 11007 5.302568 ACCAAAAAGATTTCTGCTGATGTCA 59.697 36.000 0.00 0.00 0.00 3.58
3923 11008 5.776744 ACCAAAAAGATTTCTGCTGATGTC 58.223 37.500 0.00 0.00 0.00 3.06
3924 11009 5.796424 ACCAAAAAGATTTCTGCTGATGT 57.204 34.783 0.00 0.00 0.00 3.06
3927 11012 6.315891 CCAAAAACCAAAAAGATTTCTGCTGA 59.684 34.615 0.00 0.00 0.00 4.26
3928 11013 6.488817 CCAAAAACCAAAAAGATTTCTGCTG 58.511 36.000 0.00 0.00 0.00 4.41
3929 11014 5.066375 GCCAAAAACCAAAAAGATTTCTGCT 59.934 36.000 0.00 0.00 0.00 4.24
3931 11016 6.682423 AGCCAAAAACCAAAAAGATTTCTG 57.318 33.333 0.00 0.00 0.00 3.02
3932 11017 8.800370 TTAAGCCAAAAACCAAAAAGATTTCT 57.200 26.923 0.00 0.00 0.00 2.52
3933 11018 9.847706 TTTTAAGCCAAAAACCAAAAAGATTTC 57.152 25.926 0.00 0.00 33.14 2.17
3936 11021 9.800433 CATTTTTAAGCCAAAAACCAAAAAGAT 57.200 25.926 8.31 0.00 46.19 2.40
3938 11023 8.978564 ACATTTTTAAGCCAAAAACCAAAAAG 57.021 26.923 8.31 0.00 46.19 2.27
3939 11024 9.764363 AAACATTTTTAAGCCAAAAACCAAAAA 57.236 22.222 8.31 0.00 46.19 1.94
3940 11025 9.764363 AAAACATTTTTAAGCCAAAAACCAAAA 57.236 22.222 8.31 0.00 46.19 2.44
3983 11068 6.095720 TGGTGAAAACGGATTTTTAGTTCACT 59.904 34.615 11.96 0.00 38.17 3.41
3984 11069 6.267070 TGGTGAAAACGGATTTTTAGTTCAC 58.733 36.000 0.00 0.00 38.17 3.18
3985 11070 6.452494 TGGTGAAAACGGATTTTTAGTTCA 57.548 33.333 0.00 0.00 38.17 3.18
3986 11071 7.940178 AATGGTGAAAACGGATTTTTAGTTC 57.060 32.000 0.00 0.00 38.17 3.01
3988 11073 9.990360 ATTTAATGGTGAAAACGGATTTTTAGT 57.010 25.926 0.00 0.00 38.17 2.24
3990 11075 9.425577 GGATTTAATGGTGAAAACGGATTTTTA 57.574 29.630 0.00 0.00 38.17 1.52
3991 11076 7.117092 CGGATTTAATGGTGAAAACGGATTTTT 59.883 33.333 0.00 0.00 38.17 1.94
3992 11077 6.588373 CGGATTTAATGGTGAAAACGGATTTT 59.412 34.615 0.00 0.00 40.83 1.82
3993 11078 6.096695 CGGATTTAATGGTGAAAACGGATTT 58.903 36.000 0.00 0.00 0.00 2.17
3994 11079 5.184287 ACGGATTTAATGGTGAAAACGGATT 59.816 36.000 0.00 0.00 0.00 3.01
3998 11083 5.291293 AGACGGATTTAATGGTGAAAACG 57.709 39.130 0.00 0.00 0.00 3.60
3999 11084 5.121142 TCGAGACGGATTTAATGGTGAAAAC 59.879 40.000 0.00 0.00 0.00 2.43
4001 11086 4.823157 TCGAGACGGATTTAATGGTGAAA 58.177 39.130 0.00 0.00 0.00 2.69
4002 11087 4.459390 TCGAGACGGATTTAATGGTGAA 57.541 40.909 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.