Multiple sequence alignment - TraesCS3B01G447600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G447600 chr3B 100.000 4793 0 0 1 4793 686728862 686733654 0.000000e+00 8852
1 TraesCS3B01G447600 chr3D 92.923 3250 143 27 1 3200 520943878 520947090 0.000000e+00 4647
2 TraesCS3B01G447600 chr3D 92.461 703 32 16 3196 3890 520947132 520947821 0.000000e+00 985
3 TraesCS3B01G447600 chr3D 87.749 351 18 11 4336 4676 520947952 520948287 2.090000e-103 387
4 TraesCS3B01G447600 chr3A 91.715 2052 89 29 1793 3803 656428441 656430452 0.000000e+00 2772
5 TraesCS3B01G447600 chr3A 90.569 1177 76 20 636 1803 656427273 656428423 0.000000e+00 1526
6 TraesCS3B01G447600 chr3A 84.639 319 14 16 4364 4655 656431004 656431314 7.850000e-73 285
7 TraesCS3B01G447600 chr3A 76.842 380 61 18 170 533 656426055 656426423 6.330000e-44 189
8 TraesCS3B01G447600 chr3A 83.951 162 16 4 3944 4105 656430724 656430875 3.870000e-31 147
9 TraesCS3B01G447600 chr3A 92.708 96 5 1 3793 3886 656430481 656430576 2.330000e-28 137
10 TraesCS3B01G447600 chr2B 88.776 294 30 3 2480 2773 728193533 728193243 1.640000e-94 357
11 TraesCS3B01G447600 chr2B 87.838 296 32 4 2478 2773 26148932 26148641 1.280000e-90 344
12 TraesCS3B01G447600 chr1D 90.041 241 22 2 2535 2774 453045890 453046129 1.300000e-80 311
13 TraesCS3B01G447600 chr7A 89.212 241 24 2 2535 2774 19040141 19040380 2.800000e-77 300
14 TraesCS3B01G447600 chr2D 89.256 242 22 2 2535 2773 63211111 63210871 2.800000e-77 300
15 TraesCS3B01G447600 chrUn 88.333 240 24 2 2534 2773 90403473 90403238 7.850000e-73 285
16 TraesCS3B01G447600 chrUn 87.917 240 25 2 2534 2773 90484035 90483800 3.650000e-71 279


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G447600 chr3B 686728862 686733654 4792 False 8852.000000 8852 100.000000 1 4793 1 chr3B.!!$F1 4792
1 TraesCS3B01G447600 chr3D 520943878 520948287 4409 False 2006.333333 4647 91.044333 1 4676 3 chr3D.!!$F1 4675
2 TraesCS3B01G447600 chr3A 656426055 656431314 5259 False 842.666667 2772 86.737333 170 4655 6 chr3A.!!$F1 4485

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
515 529 0.251787 ACAAATCAAGTGGGCCCTCC 60.252 55.0 25.7 13.98 0.0 4.30 F
946 1755 0.387565 CCCAAACAGTTCCAAACCCG 59.612 55.0 0.0 0.00 0.0 5.28 F
1492 2309 0.112412 TCCTCTGCCTTTTTGTCCCC 59.888 55.0 0.0 0.00 0.0 4.81 F
3165 4057 0.108585 TGGAGAACTTCAGCACCACC 59.891 55.0 0.0 0.00 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1390 2207 0.445436 GACCAGAAACATCAGCTGCG 59.555 55.0 9.47 5.02 0.00 5.18 R
2146 3001 1.554392 CAGTACGAGCAGCACAGATC 58.446 55.0 0.00 0.00 0.00 2.75 R
3434 4376 0.178981 ACCTGCAGACACCATGCTTT 60.179 50.0 17.39 0.00 44.17 3.51 R
4295 5394 0.037605 AACCGAGGAACATCACGGAC 60.038 55.0 17.30 0.00 46.94 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 7.413109 CGAGTTCCTTTTATAGTTTCCTTCTGC 60.413 40.741 0.00 0.00 0.00 4.26
43 44 6.183360 CCTTTTATAGTTTCCTTCTGCAGACG 60.183 42.308 18.03 15.28 0.00 4.18
51 52 0.462759 CTTCTGCAGACGGGGAATCC 60.463 60.000 18.03 0.00 0.00 3.01
78 79 5.848406 ACAAAAGCCGAAAATAATTGGTCA 58.152 33.333 0.00 0.00 0.00 4.02
80 81 6.368516 ACAAAAGCCGAAAATAATTGGTCATG 59.631 34.615 0.00 0.00 0.00 3.07
84 85 8.458573 AAGCCGAAAATAATTGGTCATGTATA 57.541 30.769 0.00 0.00 0.00 1.47
91 92 6.887376 ATAATTGGTCATGTATATCGCGAC 57.113 37.500 12.93 0.00 0.00 5.19
108 109 1.330818 CGACGAATGTGGCGTTTATCG 60.331 52.381 0.00 0.00 42.77 2.92
111 112 1.656594 CGAATGTGGCGTTTATCGTGA 59.343 47.619 0.00 0.00 42.13 4.35
155 157 5.583495 ACGAATGTCACATCTAGCTACTTC 58.417 41.667 0.00 0.00 0.00 3.01
180 182 3.019564 AGTTCTTGCCCATAGTGAATGC 58.980 45.455 0.00 0.00 33.92 3.56
182 184 4.080356 AGTTCTTGCCCATAGTGAATGCTA 60.080 41.667 0.00 0.00 33.92 3.49
211 213 7.685481 TGAACACCCTATCTTCACTTAAATCA 58.315 34.615 0.00 0.00 0.00 2.57
214 216 6.443849 ACACCCTATCTTCACTTAAATCAGGA 59.556 38.462 0.00 0.00 0.00 3.86
246 250 4.463050 TGGTTTTCCACACCCTATCTTT 57.537 40.909 0.00 0.00 46.22 2.52
283 290 2.623418 ACCCCATAGAGTGTGAGTCA 57.377 50.000 0.00 0.00 0.00 3.41
285 292 1.759445 CCCCATAGAGTGTGAGTCAGG 59.241 57.143 0.00 0.00 0.00 3.86
287 294 3.303938 CCCATAGAGTGTGAGTCAGGAT 58.696 50.000 0.00 0.00 0.00 3.24
388 395 1.533625 TTGACAAAAGCATCTCCCCG 58.466 50.000 0.00 0.00 0.00 5.73
405 412 1.452953 CCGCCTAGACATGGAGCGTA 61.453 60.000 13.39 0.00 45.06 4.42
417 427 4.947388 ACATGGAGCGTAATGTGGTTTATT 59.053 37.500 0.00 0.00 35.71 1.40
483 493 9.519191 TGTGATTGAATATATGTCCCCTAATTG 57.481 33.333 0.00 0.00 0.00 2.32
515 529 0.251787 ACAAATCAAGTGGGCCCTCC 60.252 55.000 25.70 13.98 0.00 4.30
541 555 5.582665 AGGAAAAGATATGCGAAGTGAGTTC 59.417 40.000 0.00 0.00 0.00 3.01
542 556 5.351465 GGAAAAGATATGCGAAGTGAGTTCA 59.649 40.000 0.49 0.00 34.44 3.18
543 557 6.037610 GGAAAAGATATGCGAAGTGAGTTCAT 59.962 38.462 0.49 0.00 34.44 2.57
548 562 0.674895 GCGAAGTGAGTTCATGCCCT 60.675 55.000 0.49 0.00 34.44 5.19
550 564 1.457346 GAAGTGAGTTCATGCCCTGG 58.543 55.000 0.00 0.00 34.97 4.45
570 584 3.455543 TGGCATGAACATGGTCTAGATCA 59.544 43.478 12.94 8.45 39.16 2.92
586 600 2.718062 AGATCAATGTGGATGGGGCATA 59.282 45.455 0.00 0.00 0.00 3.14
587 601 3.335786 AGATCAATGTGGATGGGGCATAT 59.664 43.478 0.00 0.00 0.00 1.78
588 602 3.616343 TCAATGTGGATGGGGCATATT 57.384 42.857 0.00 0.00 0.00 1.28
633 647 5.543790 TGGTGCTAATGCTATTGGAGAGATA 59.456 40.000 0.00 0.00 40.48 1.98
691 1495 5.070446 TGAGTGAGTGATGACCTAACAAACT 59.930 40.000 0.00 0.00 0.00 2.66
837 1646 3.293337 TGCGGGTTCTAGTTATAGAGCA 58.707 45.455 2.30 0.00 40.11 4.26
839 1648 5.074804 TGCGGGTTCTAGTTATAGAGCATA 58.925 41.667 2.30 0.00 40.11 3.14
861 1670 3.416119 AAAGTCGTCGCATAATCTCGA 57.584 42.857 0.00 0.00 0.00 4.04
940 1749 1.890041 CGCGACCCAAACAGTTCCA 60.890 57.895 0.00 0.00 0.00 3.53
946 1755 0.387565 CCCAAACAGTTCCAAACCCG 59.612 55.000 0.00 0.00 0.00 5.28
989 1806 2.574369 ACCCGTCTTGTGATATCCCAAA 59.426 45.455 2.19 0.00 0.00 3.28
990 1807 3.202151 ACCCGTCTTGTGATATCCCAAAT 59.798 43.478 2.19 0.00 0.00 2.32
991 1808 3.815401 CCCGTCTTGTGATATCCCAAATC 59.185 47.826 2.19 0.00 0.00 2.17
992 1809 3.815401 CCGTCTTGTGATATCCCAAATCC 59.185 47.826 2.19 0.00 0.00 3.01
993 1810 4.450976 CGTCTTGTGATATCCCAAATCCA 58.549 43.478 2.19 0.00 0.00 3.41
994 1811 5.065914 CGTCTTGTGATATCCCAAATCCAT 58.934 41.667 2.19 0.00 0.00 3.41
995 1812 5.532406 CGTCTTGTGATATCCCAAATCCATT 59.468 40.000 2.19 0.00 0.00 3.16
1089 1906 1.222113 GGTGAGCCTACCTTCTGCC 59.778 63.158 0.00 0.00 37.74 4.85
1090 1907 1.268283 GGTGAGCCTACCTTCTGCCT 61.268 60.000 0.00 0.00 37.74 4.75
1097 1914 1.208293 CCTACCTTCTGCCTTCTCACC 59.792 57.143 0.00 0.00 0.00 4.02
1098 1915 1.208293 CTACCTTCTGCCTTCTCACCC 59.792 57.143 0.00 0.00 0.00 4.61
1124 1941 0.540365 TTTTGCTCCTTGGCCTCTGG 60.540 55.000 3.32 3.34 0.00 3.86
1148 1965 1.733041 CGTGTCGTCCTGATGCGTT 60.733 57.895 0.00 0.00 0.00 4.84
1161 1978 4.038080 GCGTTGTTCTTGGGGCGG 62.038 66.667 0.00 0.00 0.00 6.13
1162 1979 2.281208 CGTTGTTCTTGGGGCGGA 60.281 61.111 0.00 0.00 0.00 5.54
1274 2091 2.559668 CGGTCTACTGTGTGGAAGGTAA 59.440 50.000 0.00 0.00 0.00 2.85
1344 2161 9.458374 GTAGTCTCAAGCTGAAGATTTAGTATC 57.542 37.037 1.95 0.00 0.00 2.24
1390 2207 5.103000 ACAGACGACTGATTTACTGTATGC 58.897 41.667 21.50 0.00 46.03 3.14
1418 2235 1.674359 TGTTTCTGGTCAATGTGCGT 58.326 45.000 0.00 0.00 0.00 5.24
1419 2236 1.333308 TGTTTCTGGTCAATGTGCGTG 59.667 47.619 0.00 0.00 0.00 5.34
1420 2237 0.310543 TTTCTGGTCAATGTGCGTGC 59.689 50.000 0.00 0.00 0.00 5.34
1421 2238 0.817229 TTCTGGTCAATGTGCGTGCA 60.817 50.000 0.00 0.00 0.00 4.57
1422 2239 0.606130 TCTGGTCAATGTGCGTGCAT 60.606 50.000 0.00 0.00 0.00 3.96
1423 2240 0.455464 CTGGTCAATGTGCGTGCATG 60.455 55.000 0.09 0.09 0.00 4.06
1424 2241 1.171549 TGGTCAATGTGCGTGCATGT 61.172 50.000 7.93 0.00 0.00 3.21
1425 2242 0.730155 GGTCAATGTGCGTGCATGTG 60.730 55.000 7.93 0.00 0.00 3.21
1426 2243 1.081309 TCAATGTGCGTGCATGTGC 60.081 52.632 7.93 4.66 42.50 4.57
1427 2244 1.081041 CAATGTGCGTGCATGTGCT 60.081 52.632 7.93 0.00 42.66 4.40
1428 2245 0.665068 CAATGTGCGTGCATGTGCTT 60.665 50.000 7.93 0.00 42.66 3.91
1429 2246 0.880441 AATGTGCGTGCATGTGCTTA 59.120 45.000 7.93 0.00 42.66 3.09
1430 2247 0.448990 ATGTGCGTGCATGTGCTTAG 59.551 50.000 7.93 0.00 42.66 2.18
1431 2248 0.884259 TGTGCGTGCATGTGCTTAGT 60.884 50.000 7.93 0.00 42.66 2.24
1475 2292 6.263842 TGATGCCAATGTCAGATTAGAAATCC 59.736 38.462 0.00 0.00 0.00 3.01
1492 2309 0.112412 TCCTCTGCCTTTTTGTCCCC 59.888 55.000 0.00 0.00 0.00 4.81
1615 2440 0.959553 TTCGGTCACAGACTCACTCC 59.040 55.000 0.00 0.00 32.47 3.85
1934 2788 0.674895 AGTGACGGAAATGCAGAGCC 60.675 55.000 0.00 0.00 0.00 4.70
2095 2949 4.333372 ACACGTTGTTTTGGTGTACTTAGG 59.667 41.667 0.00 0.00 42.65 2.69
2161 3016 1.135257 GTACTGATCTGTGCTGCTCGT 60.135 52.381 14.91 0.00 0.00 4.18
2191 3046 4.142381 GGTTGTGCTTCTGTTTTTGAGAGT 60.142 41.667 0.00 0.00 0.00 3.24
2254 3109 6.573664 TTGACAAACATAAGGATCAAGTGG 57.426 37.500 0.00 0.00 0.00 4.00
2268 3123 8.477419 AGGATCAAGTGGAAGAAATTTAAACA 57.523 30.769 0.00 0.00 0.00 2.83
2350 3205 4.761739 AGGACATCGATTGACATGTTTTGT 59.238 37.500 0.00 0.00 42.79 2.83
2464 3331 8.957466 TCTAGTGTATGTATATATGTGTGCTCC 58.043 37.037 0.00 0.00 0.00 4.70
2474 3341 1.774110 TGTGTGCTCCCAATGTTTGT 58.226 45.000 0.00 0.00 0.00 2.83
2475 3342 1.680735 TGTGTGCTCCCAATGTTTGTC 59.319 47.619 0.00 0.00 0.00 3.18
2507 3398 6.491062 TCATTTCACCATTTCACATGACTCTT 59.509 34.615 0.00 0.00 0.00 2.85
2687 3579 7.667557 TCTAAGTGTAAACAGTGTTCTGCTAT 58.332 34.615 9.40 0.00 44.77 2.97
2881 3773 8.153479 AGTAAGCGATTATTTTGACATATGCA 57.847 30.769 1.58 0.00 0.00 3.96
2923 3815 2.791560 CAGACTGTTGACTGTTGAGACG 59.208 50.000 0.00 0.00 32.73 4.18
3044 3936 3.691049 TTCTTTTGCTTCGTGGAGTTG 57.309 42.857 0.00 0.00 0.00 3.16
3115 4007 1.153549 GCATTCGAGGGACGCTCTT 60.154 57.895 16.58 0.14 42.26 2.85
3131 4023 4.201724 ACGCTCTTCAAATTATCGCAACTC 60.202 41.667 0.00 0.00 0.00 3.01
3165 4057 0.108585 TGGAGAACTTCAGCACCACC 59.891 55.000 0.00 0.00 0.00 4.61
3220 4158 7.275779 CGTACTAAACTGCATGATCTTTAGTGT 59.724 37.037 21.05 7.72 38.97 3.55
3222 4160 8.396272 ACTAAACTGCATGATCTTTAGTGTTT 57.604 30.769 15.71 9.94 37.80 2.83
3247 4188 3.074538 AGGGTTGTCCTTTGACTTGCTAT 59.925 43.478 0.00 0.00 45.47 2.97
3259 4200 4.015764 TGACTTGCTATGCCAATTGCTAA 58.984 39.130 0.00 0.00 42.00 3.09
3262 4203 2.637947 TGCTATGCCAATTGCTAACGA 58.362 42.857 0.00 0.00 42.00 3.85
3263 4204 2.613595 TGCTATGCCAATTGCTAACGAG 59.386 45.455 0.00 0.00 42.00 4.18
3264 4205 2.872245 GCTATGCCAATTGCTAACGAGA 59.128 45.455 0.00 0.00 42.00 4.04
3274 4215 7.095229 GCCAATTGCTAACGAGATGACATTATA 60.095 37.037 0.00 0.00 36.87 0.98
3314 4255 6.590677 GGTGAACCTTCTACTGTTCTACATTC 59.409 42.308 0.00 0.00 41.10 2.67
3348 4289 6.816640 GCTCTGTTATAGTGTTTGGATGTGTA 59.183 38.462 0.00 0.00 0.00 2.90
3349 4290 7.495934 GCTCTGTTATAGTGTTTGGATGTGTAT 59.504 37.037 0.00 0.00 0.00 2.29
3368 4309 8.432110 TGTGTATAACATAACATTACAGCAGG 57.568 34.615 0.00 0.00 32.36 4.85
3369 4310 8.261522 TGTGTATAACATAACATTACAGCAGGA 58.738 33.333 0.00 0.00 32.36 3.86
3370 4311 8.765219 GTGTATAACATAACATTACAGCAGGAG 58.235 37.037 0.00 0.00 0.00 3.69
3371 4312 8.700973 TGTATAACATAACATTACAGCAGGAGA 58.299 33.333 0.00 0.00 0.00 3.71
3372 4313 9.712305 GTATAACATAACATTACAGCAGGAGAT 57.288 33.333 0.00 0.00 0.00 2.75
3386 4327 1.137872 AGGAGATGCACACTTCCGATC 59.862 52.381 0.00 0.00 0.00 3.69
3387 4328 1.576356 GAGATGCACACTTCCGATCC 58.424 55.000 0.00 0.00 0.00 3.36
3426 4368 4.022849 GTGAAGAAGTGCCTGCAGTATTTT 60.023 41.667 13.81 1.66 0.00 1.82
3434 4376 6.001460 AGTGCCTGCAGTATTTTACTAACAA 58.999 36.000 13.81 0.00 37.23 2.83
3444 4386 9.128107 CAGTATTTTACTAACAAAAGCATGGTG 57.872 33.333 0.00 0.00 37.23 4.17
3573 4515 2.412591 CCCAGATGGTCCTCAGGTAAT 58.587 52.381 0.00 0.00 0.00 1.89
3576 4518 4.202367 CCCAGATGGTCCTCAGGTAATAAC 60.202 50.000 0.00 0.00 0.00 1.89
3805 4786 4.641989 AGTTGCAGTGAACATGTTTCTTCT 59.358 37.500 13.36 6.28 0.00 2.85
3878 4859 9.807649 ATTGCTTTTTATCATACATCCAAGTTC 57.192 29.630 0.00 0.00 0.00 3.01
3879 4860 8.347004 TGCTTTTTATCATACATCCAAGTTCA 57.653 30.769 0.00 0.00 0.00 3.18
3880 4861 8.970020 TGCTTTTTATCATACATCCAAGTTCAT 58.030 29.630 0.00 0.00 0.00 2.57
3881 4862 9.807649 GCTTTTTATCATACATCCAAGTTCATT 57.192 29.630 0.00 0.00 0.00 2.57
3896 4877 9.585369 TCCAAGTTCATTAATAATATCCATGCA 57.415 29.630 0.00 0.00 0.00 3.96
3936 4917 8.683776 AATAATATATGAATTGCCAACCCCAT 57.316 30.769 0.00 0.00 0.00 4.00
3939 4920 5.806654 ATATGAATTGCCAACCCCATAAC 57.193 39.130 0.00 0.00 0.00 1.89
3940 4921 2.183679 TGAATTGCCAACCCCATAACC 58.816 47.619 0.00 0.00 0.00 2.85
3941 4922 2.225496 TGAATTGCCAACCCCATAACCT 60.225 45.455 0.00 0.00 0.00 3.50
3942 4923 1.864669 ATTGCCAACCCCATAACCTG 58.135 50.000 0.00 0.00 0.00 4.00
3964 5063 6.370718 CCTGGAAATGCTACGTTAACTACTTT 59.629 38.462 3.71 0.00 0.00 2.66
3976 5075 5.628130 GTTAACTACTTTCCCAGGTTTCCT 58.372 41.667 0.00 0.00 0.00 3.36
3981 5080 8.865244 AACTACTTTCCCAGGTTTCCTATATA 57.135 34.615 0.00 0.00 29.64 0.86
3982 5081 9.461734 AACTACTTTCCCAGGTTTCCTATATAT 57.538 33.333 0.00 0.00 29.64 0.86
3984 5083 9.726438 CTACTTTCCCAGGTTTCCTATATATTG 57.274 37.037 0.00 0.00 29.64 1.90
3986 5085 8.566109 ACTTTCCCAGGTTTCCTATATATTGTT 58.434 33.333 0.00 0.00 29.64 2.83
3987 5086 9.421399 CTTTCCCAGGTTTCCTATATATTGTTT 57.579 33.333 0.00 0.00 29.64 2.83
3988 5087 8.990163 TTCCCAGGTTTCCTATATATTGTTTC 57.010 34.615 0.00 0.00 29.64 2.78
3989 5088 8.344939 TCCCAGGTTTCCTATATATTGTTTCT 57.655 34.615 0.00 0.00 29.64 2.52
3990 5089 9.455144 TCCCAGGTTTCCTATATATTGTTTCTA 57.545 33.333 0.00 0.00 29.64 2.10
4025 5124 3.884037 AGGTTTGACCATGACTTTCCT 57.116 42.857 0.00 0.00 41.95 3.36
4027 5126 2.558359 GGTTTGACCATGACTTTCCTGG 59.442 50.000 0.00 0.00 38.42 4.45
4028 5127 1.909700 TTGACCATGACTTTCCTGGC 58.090 50.000 0.00 0.00 35.85 4.85
4029 5128 1.067295 TGACCATGACTTTCCTGGCT 58.933 50.000 0.00 0.00 35.85 4.75
4031 5130 2.158475 TGACCATGACTTTCCTGGCTTT 60.158 45.455 0.00 0.00 35.85 3.51
4032 5131 3.073798 TGACCATGACTTTCCTGGCTTTA 59.926 43.478 0.00 0.00 35.85 1.85
4033 5132 4.263905 TGACCATGACTTTCCTGGCTTTAT 60.264 41.667 0.00 0.00 35.85 1.40
4034 5133 4.273318 ACCATGACTTTCCTGGCTTTATC 58.727 43.478 0.00 0.00 35.85 1.75
4035 5134 4.018050 ACCATGACTTTCCTGGCTTTATCT 60.018 41.667 0.00 0.00 35.85 1.98
4036 5135 4.578105 CCATGACTTTCCTGGCTTTATCTC 59.422 45.833 0.00 0.00 0.00 2.75
4037 5136 4.222124 TGACTTTCCTGGCTTTATCTCC 57.778 45.455 0.00 0.00 0.00 3.71
4062 5161 0.865111 CGATGCGTTGACAAGGTTGA 59.135 50.000 9.46 0.00 0.00 3.18
4105 5204 2.173669 CGCCACACGGTGATCATCC 61.174 63.158 16.29 1.25 46.55 3.51
4113 5212 2.240500 GGTGATCATCCGCTCGTGC 61.241 63.158 0.00 0.00 0.00 5.34
4118 5217 0.882042 ATCATCCGCTCGTGCCATTC 60.882 55.000 3.52 0.00 35.36 2.67
4119 5218 1.815003 CATCCGCTCGTGCCATTCA 60.815 57.895 3.52 0.00 35.36 2.57
4122 5221 2.034879 CCGCTCGTGCCATTCAACT 61.035 57.895 3.52 0.00 35.36 3.16
4123 5222 1.133253 CGCTCGTGCCATTCAACTG 59.867 57.895 3.52 0.00 35.36 3.16
4124 5223 1.568612 CGCTCGTGCCATTCAACTGT 61.569 55.000 3.52 0.00 35.36 3.55
4125 5224 0.593128 GCTCGTGCCATTCAACTGTT 59.407 50.000 0.00 0.00 0.00 3.16
4126 5225 1.804151 GCTCGTGCCATTCAACTGTTA 59.196 47.619 0.00 0.00 0.00 2.41
4127 5226 2.412847 GCTCGTGCCATTCAACTGTTAC 60.413 50.000 0.00 0.00 0.00 2.50
4128 5227 2.147958 TCGTGCCATTCAACTGTTACC 58.852 47.619 0.00 0.00 0.00 2.85
4129 5228 1.876799 CGTGCCATTCAACTGTTACCA 59.123 47.619 0.00 0.00 0.00 3.25
4130 5229 2.487762 CGTGCCATTCAACTGTTACCAT 59.512 45.455 0.00 0.00 0.00 3.55
4131 5230 3.057596 CGTGCCATTCAACTGTTACCATT 60.058 43.478 0.00 0.00 0.00 3.16
4132 5231 4.485163 GTGCCATTCAACTGTTACCATTC 58.515 43.478 0.00 0.00 0.00 2.67
4133 5232 4.218417 GTGCCATTCAACTGTTACCATTCT 59.782 41.667 0.00 0.00 0.00 2.40
4134 5233 4.458989 TGCCATTCAACTGTTACCATTCTC 59.541 41.667 0.00 0.00 0.00 2.87
4135 5234 4.142381 GCCATTCAACTGTTACCATTCTCC 60.142 45.833 0.00 0.00 0.00 3.71
4136 5235 5.009631 CCATTCAACTGTTACCATTCTCCA 58.990 41.667 0.00 0.00 0.00 3.86
4137 5236 5.106157 CCATTCAACTGTTACCATTCTCCAC 60.106 44.000 0.00 0.00 0.00 4.02
4138 5237 4.698201 TCAACTGTTACCATTCTCCACA 57.302 40.909 0.00 0.00 0.00 4.17
4139 5238 4.641396 TCAACTGTTACCATTCTCCACAG 58.359 43.478 0.00 0.00 40.65 3.66
4140 5239 3.059352 ACTGTTACCATTCTCCACAGC 57.941 47.619 0.00 0.00 38.78 4.40
4141 5240 2.290323 ACTGTTACCATTCTCCACAGCC 60.290 50.000 0.00 0.00 38.78 4.85
4142 5241 1.338674 TGTTACCATTCTCCACAGCCG 60.339 52.381 0.00 0.00 0.00 5.52
4143 5242 1.066430 GTTACCATTCTCCACAGCCGA 60.066 52.381 0.00 0.00 0.00 5.54
4144 5243 1.271856 TACCATTCTCCACAGCCGAA 58.728 50.000 0.00 0.00 0.00 4.30
4145 5244 0.620556 ACCATTCTCCACAGCCGAAT 59.379 50.000 0.00 0.00 0.00 3.34
4146 5245 1.837439 ACCATTCTCCACAGCCGAATA 59.163 47.619 0.00 0.00 0.00 1.75
4147 5246 2.439507 ACCATTCTCCACAGCCGAATAT 59.560 45.455 0.00 0.00 0.00 1.28
4148 5247 3.646162 ACCATTCTCCACAGCCGAATATA 59.354 43.478 0.00 0.00 0.00 0.86
4149 5248 3.997021 CCATTCTCCACAGCCGAATATAC 59.003 47.826 0.00 0.00 0.00 1.47
4152 5251 3.035363 TCTCCACAGCCGAATATACCAA 58.965 45.455 0.00 0.00 0.00 3.67
4167 5266 7.042992 CGAATATACCAATAACAAACAGCTCGA 60.043 37.037 0.00 0.00 0.00 4.04
4170 5269 3.746492 ACCAATAACAAACAGCTCGACTC 59.254 43.478 0.00 0.00 0.00 3.36
4173 5272 5.812642 CCAATAACAAACAGCTCGACTCTAT 59.187 40.000 0.00 0.00 0.00 1.98
4186 5285 2.096248 GACTCTATAGAGGCGGGATGG 58.904 57.143 29.03 6.52 46.13 3.51
4187 5286 0.820871 CTCTATAGAGGCGGGATGGC 59.179 60.000 20.37 0.00 45.27 4.40
4224 5323 4.596311 CACATGCGTGCCAGAGTA 57.404 55.556 5.64 0.00 36.06 2.59
4225 5324 3.070076 CACATGCGTGCCAGAGTAT 57.930 52.632 5.64 0.00 36.06 2.12
4226 5325 0.654160 CACATGCGTGCCAGAGTATG 59.346 55.000 5.64 0.00 36.06 2.39
4227 5326 0.250234 ACATGCGTGCCAGAGTATGT 59.750 50.000 5.64 0.00 38.52 2.29
4228 5327 1.480545 ACATGCGTGCCAGAGTATGTA 59.519 47.619 5.64 0.00 40.82 2.29
4229 5328 2.130395 CATGCGTGCCAGAGTATGTAG 58.870 52.381 0.00 0.00 0.00 2.74
4230 5329 0.179111 TGCGTGCCAGAGTATGTAGC 60.179 55.000 0.00 0.00 0.00 3.58
4231 5330 0.179111 GCGTGCCAGAGTATGTAGCA 60.179 55.000 0.00 0.00 0.00 3.49
4232 5331 1.845266 CGTGCCAGAGTATGTAGCAG 58.155 55.000 0.00 0.00 33.37 4.24
4233 5332 1.576356 GTGCCAGAGTATGTAGCAGC 58.424 55.000 0.00 0.00 33.37 5.25
4234 5333 1.134699 GTGCCAGAGTATGTAGCAGCA 60.135 52.381 0.00 0.00 33.37 4.41
4268 5367 1.442148 CGGCCTAGGGTAGAACAGC 59.558 63.158 11.72 0.00 0.00 4.40
4269 5368 1.327690 CGGCCTAGGGTAGAACAGCA 61.328 60.000 11.72 0.00 0.00 4.41
4282 5381 0.767375 AACAGCAGGGAGAAGCTTCA 59.233 50.000 27.57 0.00 39.50 3.02
4283 5382 0.324285 ACAGCAGGGAGAAGCTTCAG 59.676 55.000 27.57 12.68 39.50 3.02
4284 5383 1.025647 CAGCAGGGAGAAGCTTCAGC 61.026 60.000 27.57 20.52 39.50 4.26
4302 5401 3.998672 GGTGCCCGAAGTCCGTGA 61.999 66.667 0.00 0.00 36.31 4.35
4303 5402 2.264794 GTGCCCGAAGTCCGTGAT 59.735 61.111 0.00 0.00 36.31 3.06
4304 5403 2.100631 GTGCCCGAAGTCCGTGATG 61.101 63.158 0.00 0.00 36.31 3.07
4305 5404 2.264794 GCCCGAAGTCCGTGATGT 59.735 61.111 0.00 0.00 36.31 3.06
4306 5405 1.375523 GCCCGAAGTCCGTGATGTT 60.376 57.895 0.00 0.00 36.31 2.71
4307 5406 1.359459 GCCCGAAGTCCGTGATGTTC 61.359 60.000 0.00 0.00 36.31 3.18
4308 5407 0.739813 CCCGAAGTCCGTGATGTTCC 60.740 60.000 0.00 0.00 36.31 3.62
4309 5408 0.246635 CCGAAGTCCGTGATGTTCCT 59.753 55.000 0.00 0.00 36.31 3.36
4310 5409 1.630148 CGAAGTCCGTGATGTTCCTC 58.370 55.000 0.00 0.00 0.00 3.71
4311 5410 1.630148 GAAGTCCGTGATGTTCCTCG 58.370 55.000 0.00 0.00 0.00 4.63
4312 5411 0.246635 AAGTCCGTGATGTTCCTCGG 59.753 55.000 0.00 0.00 43.65 4.63
4313 5412 0.898789 AGTCCGTGATGTTCCTCGGT 60.899 55.000 0.00 0.00 42.95 4.69
4314 5413 0.037605 GTCCGTGATGTTCCTCGGTT 60.038 55.000 0.00 0.00 42.95 4.44
4315 5414 0.037697 TCCGTGATGTTCCTCGGTTG 60.038 55.000 0.00 0.00 42.95 3.77
4316 5415 1.019278 CCGTGATGTTCCTCGGTTGG 61.019 60.000 0.00 0.00 38.45 3.77
4317 5416 1.635663 CGTGATGTTCCTCGGTTGGC 61.636 60.000 0.00 0.00 0.00 4.52
4318 5417 1.375396 TGATGTTCCTCGGTTGGCG 60.375 57.895 0.00 0.00 0.00 5.69
4319 5418 2.746277 ATGTTCCTCGGTTGGCGC 60.746 61.111 0.00 0.00 0.00 6.53
4320 5419 3.254024 ATGTTCCTCGGTTGGCGCT 62.254 57.895 7.64 0.00 0.00 5.92
4321 5420 1.895020 ATGTTCCTCGGTTGGCGCTA 61.895 55.000 7.64 0.00 0.00 4.26
4322 5421 2.098831 GTTCCTCGGTTGGCGCTAC 61.099 63.158 7.64 5.96 0.00 3.58
4323 5422 3.305177 TTCCTCGGTTGGCGCTACC 62.305 63.158 18.46 18.46 39.84 3.18
4339 5438 3.729966 GCTACCACAGCCTTACTAATCC 58.270 50.000 0.00 0.00 45.23 3.01
4340 5439 2.981859 ACCACAGCCTTACTAATCCG 57.018 50.000 0.00 0.00 0.00 4.18
4341 5440 1.134491 ACCACAGCCTTACTAATCCGC 60.134 52.381 0.00 0.00 0.00 5.54
4342 5441 1.134521 CCACAGCCTTACTAATCCGCA 60.135 52.381 0.00 0.00 0.00 5.69
4343 5442 1.933853 CACAGCCTTACTAATCCGCAC 59.066 52.381 0.00 0.00 0.00 5.34
4344 5443 1.134491 ACAGCCTTACTAATCCGCACC 60.134 52.381 0.00 0.00 0.00 5.01
4345 5444 0.104304 AGCCTTACTAATCCGCACCG 59.896 55.000 0.00 0.00 0.00 4.94
4355 5454 4.745751 CCGCACCGGGCTAACGAA 62.746 66.667 6.32 0.00 44.15 3.85
4356 5455 2.739287 CGCACCGGGCTAACGAAA 60.739 61.111 6.32 0.00 41.67 3.46
4357 5456 2.736682 CGCACCGGGCTAACGAAAG 61.737 63.158 6.32 0.00 41.67 2.62
4358 5457 1.670083 GCACCGGGCTAACGAAAGT 60.670 57.895 6.32 0.00 43.83 2.66
4359 5458 1.908066 GCACCGGGCTAACGAAAGTG 61.908 60.000 6.32 0.00 41.76 3.16
4371 5573 1.651240 CGAAAGTGCCAGCCTGATGG 61.651 60.000 0.00 0.00 43.72 3.51
4417 5620 1.885887 TCAACGGGCCTGAATTGAAAG 59.114 47.619 21.41 0.00 0.00 2.62
4471 5688 4.576374 GGGGCGTAGGGGAGGGAT 62.576 72.222 0.00 0.00 0.00 3.85
4484 5701 2.225394 GGGAGGGATAGGTCTATGCTCA 60.225 54.545 8.90 0.00 34.76 4.26
4486 5703 3.096092 GAGGGATAGGTCTATGCTCAGG 58.904 54.545 8.90 0.00 34.76 3.86
4487 5704 2.183679 GGGATAGGTCTATGCTCAGGG 58.816 57.143 8.90 0.00 34.76 4.45
4488 5705 2.493687 GGGATAGGTCTATGCTCAGGGT 60.494 54.545 8.90 0.00 34.76 4.34
4582 5811 9.826574 GAGACAGAAGAGATTACTACTTAGAGA 57.173 37.037 0.00 0.00 0.00 3.10
4623 5852 2.872388 GCGCAGGCTCCCTATAGCA 61.872 63.158 0.30 0.00 44.64 3.49
4624 5853 1.978473 CGCAGGCTCCCTATAGCAT 59.022 57.895 0.00 0.00 44.64 3.79
4626 5855 1.759445 CGCAGGCTCCCTATAGCATAT 59.241 52.381 0.00 0.00 44.64 1.78
4627 5856 2.959030 CGCAGGCTCCCTATAGCATATA 59.041 50.000 0.00 0.00 44.64 0.86
4628 5857 3.005261 CGCAGGCTCCCTATAGCATATAG 59.995 52.174 0.00 0.00 44.64 1.31
4629 5858 3.244044 GCAGGCTCCCTATAGCATATAGC 60.244 52.174 0.00 0.00 44.64 2.97
4630 5859 4.222336 CAGGCTCCCTATAGCATATAGCT 58.778 47.826 0.00 0.00 44.77 3.32
4688 5917 2.434185 GCTGGGTTGCGTGATCGA 60.434 61.111 0.00 0.00 39.71 3.59
4689 5918 1.815421 GCTGGGTTGCGTGATCGAT 60.815 57.895 0.00 0.00 39.71 3.59
4690 5919 2.009108 CTGGGTTGCGTGATCGATG 58.991 57.895 0.54 0.00 39.71 3.84
4691 5920 2.040213 CTGGGTTGCGTGATCGATGC 62.040 60.000 0.54 0.00 39.71 3.91
4692 5921 2.106074 GGGTTGCGTGATCGATGCA 61.106 57.895 0.54 3.22 45.27 3.96
4693 5922 1.060937 GGTTGCGTGATCGATGCAC 59.939 57.895 0.54 10.08 46.65 4.57
4694 5923 1.361668 GGTTGCGTGATCGATGCACT 61.362 55.000 19.05 0.00 46.65 4.40
4695 5924 0.247419 GTTGCGTGATCGATGCACTG 60.247 55.000 19.05 14.99 46.65 3.66
4696 5925 1.969809 TTGCGTGATCGATGCACTGC 61.970 55.000 21.94 21.94 46.65 4.40
4697 5926 2.455291 GCGTGATCGATGCACTGCA 61.455 57.895 22.78 6.09 39.26 4.41
4698 5927 1.346197 CGTGATCGATGCACTGCAC 59.654 57.895 5.67 12.26 43.04 4.57
4699 5928 1.353609 CGTGATCGATGCACTGCACA 61.354 55.000 5.67 0.00 43.04 4.57
4700 5929 0.095935 GTGATCGATGCACTGCACAC 59.904 55.000 5.67 5.93 43.04 3.82
4701 5930 1.346197 GATCGATGCACTGCACACG 59.654 57.895 19.80 19.80 43.04 4.49
4702 5931 1.354337 GATCGATGCACTGCACACGT 61.354 55.000 22.79 14.75 43.04 4.49
4703 5932 1.354337 ATCGATGCACTGCACACGTC 61.354 55.000 22.79 10.85 43.04 4.34
4704 5933 2.309501 CGATGCACTGCACACGTCA 61.310 57.895 18.41 0.00 43.04 4.35
4705 5934 1.830368 CGATGCACTGCACACGTCAA 61.830 55.000 18.41 0.00 43.04 3.18
4706 5935 0.518636 GATGCACTGCACACGTCAAT 59.481 50.000 5.67 0.00 43.04 2.57
4707 5936 0.518636 ATGCACTGCACACGTCAATC 59.481 50.000 5.67 0.00 43.04 2.67
4708 5937 1.207593 GCACTGCACACGTCAATCC 59.792 57.895 0.00 0.00 0.00 3.01
4709 5938 1.492873 CACTGCACACGTCAATCCG 59.507 57.895 0.00 0.00 0.00 4.18
4710 5939 1.667830 ACTGCACACGTCAATCCGG 60.668 57.895 0.00 0.00 0.00 5.14
4711 5940 2.358125 TGCACACGTCAATCCGGG 60.358 61.111 0.00 0.00 37.25 5.73
4712 5941 3.799755 GCACACGTCAATCCGGGC 61.800 66.667 0.00 0.00 33.59 6.13
4713 5942 3.487202 CACACGTCAATCCGGGCG 61.487 66.667 0.00 1.52 33.59 6.13
4714 5943 3.998672 ACACGTCAATCCGGGCGT 61.999 61.111 0.00 2.21 33.59 5.68
4715 5944 2.182284 CACGTCAATCCGGGCGTA 59.818 61.111 0.00 0.00 35.71 4.42
4716 5945 1.446445 CACGTCAATCCGGGCGTAA 60.446 57.895 0.00 0.00 35.71 3.18
4717 5946 0.808453 CACGTCAATCCGGGCGTAAT 60.808 55.000 0.00 0.00 35.71 1.89
4718 5947 0.529119 ACGTCAATCCGGGCGTAATC 60.529 55.000 0.00 0.00 35.71 1.75
4719 5948 1.219522 CGTCAATCCGGGCGTAATCC 61.220 60.000 0.00 0.00 0.00 3.01
4720 5949 0.179067 GTCAATCCGGGCGTAATCCA 60.179 55.000 0.00 0.00 0.00 3.41
4721 5950 0.105964 TCAATCCGGGCGTAATCCAG 59.894 55.000 0.00 0.00 0.00 3.86
4722 5951 1.227853 AATCCGGGCGTAATCCAGC 60.228 57.895 0.00 0.00 0.00 4.85
4723 5952 2.989055 AATCCGGGCGTAATCCAGCG 62.989 60.000 0.00 0.00 0.00 5.18
4724 5953 4.524318 CCGGGCGTAATCCAGCGT 62.524 66.667 0.00 0.00 0.00 5.07
4725 5954 2.414179 CGGGCGTAATCCAGCGTA 59.586 61.111 0.00 0.00 0.00 4.42
4726 5955 1.227031 CGGGCGTAATCCAGCGTAA 60.227 57.895 0.00 0.00 0.00 3.18
4727 5956 0.599204 CGGGCGTAATCCAGCGTAAT 60.599 55.000 0.00 0.00 0.00 1.89
4728 5957 1.145803 GGGCGTAATCCAGCGTAATC 58.854 55.000 0.00 0.00 0.00 1.75
4729 5958 1.145803 GGCGTAATCCAGCGTAATCC 58.854 55.000 0.00 0.00 0.00 3.01
4730 5959 1.539496 GGCGTAATCCAGCGTAATCCA 60.539 52.381 0.00 0.00 0.00 3.41
4731 5960 2.206750 GCGTAATCCAGCGTAATCCAA 58.793 47.619 0.00 0.00 0.00 3.53
4732 5961 2.033151 GCGTAATCCAGCGTAATCCAAC 60.033 50.000 0.00 0.00 0.00 3.77
4733 5962 3.191669 CGTAATCCAGCGTAATCCAACA 58.808 45.455 0.00 0.00 0.00 3.33
4734 5963 3.245284 CGTAATCCAGCGTAATCCAACAG 59.755 47.826 0.00 0.00 0.00 3.16
4735 5964 1.668419 ATCCAGCGTAATCCAACAGC 58.332 50.000 0.00 0.00 0.00 4.40
4736 5965 0.392461 TCCAGCGTAATCCAACAGCC 60.392 55.000 0.00 0.00 0.00 4.85
4737 5966 1.705337 CCAGCGTAATCCAACAGCCG 61.705 60.000 0.00 0.00 0.00 5.52
4738 5967 0.739462 CAGCGTAATCCAACAGCCGA 60.739 55.000 0.00 0.00 0.00 5.54
4739 5968 0.178068 AGCGTAATCCAACAGCCGAT 59.822 50.000 0.00 0.00 0.00 4.18
4740 5969 0.304705 GCGTAATCCAACAGCCGATG 59.695 55.000 0.00 0.00 0.00 3.84
4741 5970 0.937304 CGTAATCCAACAGCCGATGG 59.063 55.000 0.00 0.00 36.42 3.51
4742 5971 1.472552 CGTAATCCAACAGCCGATGGA 60.473 52.381 0.87 0.87 46.97 3.41
4743 5972 2.639065 GTAATCCAACAGCCGATGGAA 58.361 47.619 2.70 0.00 46.15 3.53
4744 5973 2.214376 AATCCAACAGCCGATGGAAA 57.786 45.000 2.70 0.00 46.15 3.13
4745 5974 1.463674 ATCCAACAGCCGATGGAAAC 58.536 50.000 2.70 0.00 46.15 2.78
4746 5975 0.608035 TCCAACAGCCGATGGAAACC 60.608 55.000 0.00 0.00 40.85 3.27
4747 5976 0.893270 CCAACAGCCGATGGAAACCA 60.893 55.000 0.00 0.00 37.24 3.67
4748 5977 0.240945 CAACAGCCGATGGAAACCAC 59.759 55.000 0.00 0.00 35.80 4.16
4749 5978 0.110486 AACAGCCGATGGAAACCACT 59.890 50.000 0.00 0.00 35.80 4.00
4750 5979 0.606401 ACAGCCGATGGAAACCACTG 60.606 55.000 0.00 0.00 35.80 3.66
4751 5980 1.675641 AGCCGATGGAAACCACTGC 60.676 57.895 0.00 0.00 35.80 4.40
4752 5981 3.039202 GCCGATGGAAACCACTGCG 62.039 63.158 0.00 0.00 35.80 5.18
4753 5982 1.375396 CCGATGGAAACCACTGCGA 60.375 57.895 0.00 0.00 35.80 5.10
4754 5983 0.744414 CCGATGGAAACCACTGCGAT 60.744 55.000 0.00 0.00 35.80 4.58
4755 5984 1.086696 CGATGGAAACCACTGCGATT 58.913 50.000 0.00 0.00 35.80 3.34
4756 5985 1.202065 CGATGGAAACCACTGCGATTG 60.202 52.381 0.00 0.00 35.80 2.67
4757 5986 2.083774 GATGGAAACCACTGCGATTGA 58.916 47.619 0.00 0.00 35.80 2.57
4758 5987 1.974265 TGGAAACCACTGCGATTGAA 58.026 45.000 0.00 0.00 0.00 2.69
4759 5988 1.879380 TGGAAACCACTGCGATTGAAG 59.121 47.619 0.00 0.00 0.00 3.02
4760 5989 1.401539 GGAAACCACTGCGATTGAAGC 60.402 52.381 0.00 0.00 0.00 3.86
4761 5990 0.598065 AAACCACTGCGATTGAAGCC 59.402 50.000 0.00 0.00 0.00 4.35
4762 5991 0.537143 AACCACTGCGATTGAAGCCA 60.537 50.000 0.00 0.00 0.00 4.75
4763 5992 0.537143 ACCACTGCGATTGAAGCCAA 60.537 50.000 0.00 0.00 36.61 4.52
4764 5993 0.169672 CCACTGCGATTGAAGCCAAG 59.830 55.000 0.00 0.00 35.48 3.61
4765 5994 0.877071 CACTGCGATTGAAGCCAAGT 59.123 50.000 0.00 0.00 35.48 3.16
4766 5995 2.076100 CACTGCGATTGAAGCCAAGTA 58.924 47.619 0.00 0.00 35.48 2.24
4767 5996 2.094894 CACTGCGATTGAAGCCAAGTAG 59.905 50.000 0.00 0.00 35.48 2.57
4768 5997 2.028112 ACTGCGATTGAAGCCAAGTAGA 60.028 45.455 0.00 0.00 35.48 2.59
4769 5998 3.201290 CTGCGATTGAAGCCAAGTAGAT 58.799 45.455 0.00 0.00 35.48 1.98
4770 5999 4.141937 ACTGCGATTGAAGCCAAGTAGATA 60.142 41.667 0.00 0.00 35.48 1.98
4771 6000 4.765273 TGCGATTGAAGCCAAGTAGATAA 58.235 39.130 0.00 0.00 35.48 1.75
4772 6001 5.182487 TGCGATTGAAGCCAAGTAGATAAA 58.818 37.500 0.00 0.00 35.48 1.40
4773 6002 5.064707 TGCGATTGAAGCCAAGTAGATAAAC 59.935 40.000 0.00 0.00 35.48 2.01
4774 6003 5.728255 CGATTGAAGCCAAGTAGATAAACG 58.272 41.667 0.00 0.00 35.48 3.60
4775 6004 4.939509 TTGAAGCCAAGTAGATAAACGC 57.060 40.909 0.00 0.00 0.00 4.84
4776 6005 3.932822 TGAAGCCAAGTAGATAAACGCA 58.067 40.909 0.00 0.00 0.00 5.24
4777 6006 3.682858 TGAAGCCAAGTAGATAAACGCAC 59.317 43.478 0.00 0.00 0.00 5.34
4778 6007 3.611766 AGCCAAGTAGATAAACGCACT 57.388 42.857 0.00 0.00 0.00 4.40
4779 6008 3.939066 AGCCAAGTAGATAAACGCACTT 58.061 40.909 0.00 0.00 32.01 3.16
4780 6009 4.324267 AGCCAAGTAGATAAACGCACTTT 58.676 39.130 0.00 0.00 30.37 2.66
4781 6010 4.392138 AGCCAAGTAGATAAACGCACTTTC 59.608 41.667 0.00 0.00 30.37 2.62
4782 6011 4.724036 GCCAAGTAGATAAACGCACTTTCG 60.724 45.833 0.00 0.00 30.37 3.46
4783 6012 4.387862 CCAAGTAGATAAACGCACTTTCGT 59.612 41.667 0.00 0.00 45.58 3.85
4784 6013 5.574055 CCAAGTAGATAAACGCACTTTCGTA 59.426 40.000 0.00 0.00 42.46 3.43
4785 6014 6.237490 CCAAGTAGATAAACGCACTTTCGTAG 60.237 42.308 0.00 0.00 42.46 3.51
4786 6015 5.338365 AGTAGATAAACGCACTTTCGTAGG 58.662 41.667 0.00 0.00 42.46 3.18
4787 6016 4.184079 AGATAAACGCACTTTCGTAGGT 57.816 40.909 0.00 0.00 42.46 3.08
4788 6017 3.924686 AGATAAACGCACTTTCGTAGGTG 59.075 43.478 0.00 0.00 42.46 4.00
4789 6018 2.228138 AAACGCACTTTCGTAGGTGA 57.772 45.000 8.49 0.00 42.46 4.02
4790 6019 2.228138 AACGCACTTTCGTAGGTGAA 57.772 45.000 8.49 0.00 42.46 3.18
4791 6020 1.779569 ACGCACTTTCGTAGGTGAAG 58.220 50.000 8.49 3.98 41.36 3.02
4792 6021 1.338973 ACGCACTTTCGTAGGTGAAGA 59.661 47.619 8.49 0.00 41.36 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.870633 ATAAAAGGAACTCGTCTCGCT 57.129 42.857 0.00 0.00 38.49 4.93
43 44 0.738975 GCTTTTGTAGCGGATTCCCC 59.261 55.000 0.00 0.00 40.71 4.81
74 75 2.606717 TCGTCGCGATATACATGACC 57.393 50.000 14.06 0.00 0.00 4.02
78 79 3.242518 CCACATTCGTCGCGATATACAT 58.757 45.455 14.06 0.00 35.23 2.29
80 81 1.385743 GCCACATTCGTCGCGATATAC 59.614 52.381 14.06 0.00 35.23 1.47
91 92 1.656594 TCACGATAAACGCCACATTCG 59.343 47.619 0.00 0.00 46.94 3.34
108 109 8.060090 CGTTGTTTATTCTTACCGGATATTCAC 58.940 37.037 9.46 0.00 0.00 3.18
111 112 8.721019 TTCGTTGTTTATTCTTACCGGATATT 57.279 30.769 9.46 0.00 0.00 1.28
155 157 3.334691 TCACTATGGGCAAGAACTTTCG 58.665 45.455 0.00 0.00 0.00 3.46
180 182 7.060383 AGTGAAGATAGGGTGTTCATGATAG 57.940 40.000 0.00 0.00 41.51 2.08
182 184 5.965033 AGTGAAGATAGGGTGTTCATGAT 57.035 39.130 0.00 0.00 41.51 2.45
211 213 6.496565 TGTGGAAAACCAAATGATACATTCCT 59.503 34.615 0.00 0.00 36.80 3.36
214 216 6.463360 GGTGTGGAAAACCAAATGATACATT 58.537 36.000 0.00 0.00 46.44 2.71
240 244 4.844349 AGAGCCCAAGCAAGTAAAGATA 57.156 40.909 0.00 0.00 43.56 1.98
241 245 3.728385 AGAGCCCAAGCAAGTAAAGAT 57.272 42.857 0.00 0.00 43.56 2.40
242 246 3.508845 AAGAGCCCAAGCAAGTAAAGA 57.491 42.857 0.00 0.00 43.56 2.52
243 247 4.082733 GGTAAAGAGCCCAAGCAAGTAAAG 60.083 45.833 0.00 0.00 43.56 1.85
244 248 3.824443 GGTAAAGAGCCCAAGCAAGTAAA 59.176 43.478 0.00 0.00 43.56 2.01
245 249 3.418047 GGTAAAGAGCCCAAGCAAGTAA 58.582 45.455 0.00 0.00 43.56 2.24
246 250 2.290705 GGGTAAAGAGCCCAAGCAAGTA 60.291 50.000 0.00 0.00 45.40 2.24
283 290 7.092716 GTGTTGCTTCATGTTGATTTTATCCT 58.907 34.615 0.00 0.00 0.00 3.24
285 292 7.872163 TGTGTTGCTTCATGTTGATTTTATC 57.128 32.000 0.00 0.00 0.00 1.75
287 294 8.659925 ATTTGTGTTGCTTCATGTTGATTTTA 57.340 26.923 0.00 0.00 0.00 1.52
388 395 2.224066 ACATTACGCTCCATGTCTAGGC 60.224 50.000 0.00 0.00 0.00 3.93
497 511 0.251742 TGGAGGGCCCACTTGATTTG 60.252 55.000 27.56 0.00 40.82 2.32
515 529 5.352569 ACTCACTTCGCATATCTTTTCCTTG 59.647 40.000 0.00 0.00 0.00 3.61
548 562 3.455543 TGATCTAGACCATGTTCATGCCA 59.544 43.478 7.21 0.00 0.00 4.92
550 564 5.530171 ACATTGATCTAGACCATGTTCATGC 59.470 40.000 7.21 0.00 0.00 4.06
570 584 5.653346 TGAATAATATGCCCCATCCACATT 58.347 37.500 0.00 0.00 0.00 2.71
765 1573 4.522789 GTCAACATTAGGGCCTCTTTCAAA 59.477 41.667 10.74 0.00 0.00 2.69
766 1574 4.079253 GTCAACATTAGGGCCTCTTTCAA 58.921 43.478 10.74 0.00 0.00 2.69
837 1646 5.975344 TCGAGATTATGCGACGACTTTTTAT 59.025 36.000 0.00 0.00 0.00 1.40
839 1648 4.031426 GTCGAGATTATGCGACGACTTTTT 59.969 41.667 0.00 0.00 45.81 1.94
889 1698 4.778143 ATCTGCCCGCAACCGTCC 62.778 66.667 0.00 0.00 0.00 4.79
940 1749 3.819877 GACACTGGTCCGCGGGTTT 62.820 63.158 27.83 8.10 38.12 3.27
946 1755 1.373497 CACTCTGACACTGGTCCGC 60.373 63.158 0.00 0.00 43.65 5.54
992 1809 1.073964 CGAGCTCGCCATGGATAATG 58.926 55.000 25.07 0.94 35.89 1.90
993 1810 3.521995 CGAGCTCGCCATGGATAAT 57.478 52.632 25.07 0.00 0.00 1.28
1077 1894 1.208293 GGTGAGAAGGCAGAAGGTAGG 59.792 57.143 0.00 0.00 0.00 3.18
1079 1896 1.276622 GGGTGAGAAGGCAGAAGGTA 58.723 55.000 0.00 0.00 0.00 3.08
1080 1897 1.492993 GGGGTGAGAAGGCAGAAGGT 61.493 60.000 0.00 0.00 0.00 3.50
1081 1898 1.301293 GGGGTGAGAAGGCAGAAGG 59.699 63.158 0.00 0.00 0.00 3.46
1082 1899 1.204113 AGGGGGTGAGAAGGCAGAAG 61.204 60.000 0.00 0.00 0.00 2.85
1089 1906 2.716217 CAAAAGCTAGGGGGTGAGAAG 58.284 52.381 0.00 0.00 0.00 2.85
1090 1907 1.271926 GCAAAAGCTAGGGGGTGAGAA 60.272 52.381 0.00 0.00 0.00 2.87
1097 1914 1.467920 CAAGGAGCAAAAGCTAGGGG 58.532 55.000 0.00 0.00 0.00 4.79
1098 1915 1.467920 CCAAGGAGCAAAAGCTAGGG 58.532 55.000 0.00 0.00 0.00 3.53
1119 1936 2.202797 CGACACGATGGGCCAGAG 60.203 66.667 13.78 11.11 0.00 3.35
1124 1941 2.298158 ATCAGGACGACACGATGGGC 62.298 60.000 0.00 0.00 0.00 5.36
1148 1965 4.323477 CCGTCCGCCCCAAGAACA 62.323 66.667 0.00 0.00 0.00 3.18
1161 1978 2.813042 GCTGCAGAGCTCACCGTC 60.813 66.667 20.43 0.20 42.52 4.79
1274 2091 3.665675 GACGAGCCTGCCAATCGGT 62.666 63.158 0.00 0.00 40.67 4.69
1344 2161 8.099364 TGTCTGAACTTCTAAATTAAGGCAAG 57.901 34.615 0.00 0.00 0.00 4.01
1361 2178 5.343593 CAGTAAATCAGTCGTCTGTCTGAAC 59.656 44.000 9.48 3.89 42.22 3.18
1390 2207 0.445436 GACCAGAAACATCAGCTGCG 59.555 55.000 9.47 5.02 0.00 5.18
1418 2235 8.430801 AAAAATAAACAAACTAAGCACATGCA 57.569 26.923 6.64 0.00 45.16 3.96
1444 2261 3.765381 TCTGACATTGGCATCAAAAGGA 58.235 40.909 0.00 0.00 36.36 3.36
1475 2292 1.615392 CAAGGGGACAAAAAGGCAGAG 59.385 52.381 0.00 0.00 0.00 3.35
1492 2309 1.229428 AGCACGTGGATGAACACAAG 58.771 50.000 18.88 0.00 41.38 3.16
1541 2359 3.576861 TCCCCTCACACTGACCATATAG 58.423 50.000 0.00 0.00 0.00 1.31
1615 2440 2.287547 GCAACCAACACATGTACAGTGG 60.288 50.000 21.58 15.88 41.21 4.00
1819 2673 5.712084 AGTGAGGATCTACACTAGGTACA 57.288 43.478 18.38 0.00 44.06 2.90
2095 2949 4.202441 ACCTGCAATATGTGTCCAGAATC 58.798 43.478 0.00 0.00 0.00 2.52
2146 3001 1.554392 CAGTACGAGCAGCACAGATC 58.446 55.000 0.00 0.00 0.00 2.75
2161 3016 2.047061 ACAGAAGCACAACCTCCAGTA 58.953 47.619 0.00 0.00 0.00 2.74
2191 3046 3.954200 TGATGCTAATGGCTGTCTGAAA 58.046 40.909 0.00 0.00 42.39 2.69
2220 3075 8.584157 TCCTTATGTTTGTCAAAGCATAAATGT 58.416 29.630 20.99 5.50 44.11 2.71
2317 3172 5.230306 GTCAATCGATGTCCTTCTTACGAAG 59.770 44.000 0.00 2.01 45.00 3.79
2464 3331 2.217750 TGACTCACCGACAAACATTGG 58.782 47.619 0.00 0.00 34.12 3.16
2687 3579 8.467963 AATAACAAATGATCAGCCATGTATCA 57.532 30.769 0.09 0.00 34.35 2.15
2881 3773 6.540189 GTCTGCTCTACAACAAATGGTATGAT 59.460 38.462 0.00 0.00 0.00 2.45
2955 3847 8.797438 AGCATCACGATATAGATAGTCTCAAAA 58.203 33.333 0.00 0.00 0.00 2.44
3044 3936 3.055747 AGTTGTCTCTAAGCCCACTAAGC 60.056 47.826 0.00 0.00 0.00 3.09
3115 4007 7.606456 ACTTCTTTAGGAGTTGCGATAATTTGA 59.394 33.333 0.00 0.00 0.00 2.69
3131 4023 8.260818 TGAAGTTCTCCATCATACTTCTTTAGG 58.739 37.037 13.13 0.00 44.18 2.69
3165 4057 7.545489 AGACTTACTTCCGTAGTTATTTCCAG 58.455 38.462 0.00 0.00 38.33 3.86
3274 4215 6.319048 AGGTTCACCTCAGATGAAACATAT 57.681 37.500 0.00 0.00 44.77 1.78
3290 4231 7.379750 AGAATGTAGAACAGTAGAAGGTTCAC 58.620 38.462 7.20 4.46 44.46 3.18
3300 4241 8.577048 AGCTACTGTAAGAATGTAGAACAGTA 57.423 34.615 11.78 11.78 46.58 2.74
3348 4289 8.613060 CATCTCCTGCTGTAATGTTATGTTAT 57.387 34.615 0.00 0.00 0.00 1.89
3365 4306 0.247460 TCGGAAGTGTGCATCTCCTG 59.753 55.000 0.00 0.00 0.00 3.86
3366 4307 1.137872 GATCGGAAGTGTGCATCTCCT 59.862 52.381 0.00 0.00 0.00 3.69
3367 4308 1.576356 GATCGGAAGTGTGCATCTCC 58.424 55.000 0.00 0.00 0.00 3.71
3368 4309 1.576356 GGATCGGAAGTGTGCATCTC 58.424 55.000 0.00 0.00 0.00 2.75
3369 4310 0.179100 CGGATCGGAAGTGTGCATCT 60.179 55.000 0.00 0.00 0.00 2.90
3370 4311 1.766143 GCGGATCGGAAGTGTGCATC 61.766 60.000 4.16 0.00 0.00 3.91
3371 4312 1.815421 GCGGATCGGAAGTGTGCAT 60.815 57.895 4.16 0.00 0.00 3.96
3372 4313 2.434185 GCGGATCGGAAGTGTGCA 60.434 61.111 4.16 0.00 0.00 4.57
3380 4321 1.204704 CTATAAGCATGGCGGATCGGA 59.795 52.381 4.16 0.00 0.00 4.55
3382 4323 2.370281 ACTATAAGCATGGCGGATCG 57.630 50.000 0.00 0.00 0.00 3.69
3386 4327 3.660501 TCACTACTATAAGCATGGCGG 57.339 47.619 0.00 0.00 0.00 6.13
3387 4328 4.871513 TCTTCACTACTATAAGCATGGCG 58.128 43.478 0.00 0.00 0.00 5.69
3426 4368 4.215399 GCAGACACCATGCTTTTGTTAGTA 59.785 41.667 0.00 0.00 40.59 1.82
3434 4376 0.178981 ACCTGCAGACACCATGCTTT 60.179 50.000 17.39 0.00 44.17 3.51
3444 4386 1.282157 ACTGGGGATTAACCTGCAGAC 59.718 52.381 17.39 0.00 38.98 3.51
3573 4515 4.456535 ACCATAGTGTGTTGCTTGTGTTA 58.543 39.130 0.00 0.00 0.00 2.41
3576 4518 3.988379 AACCATAGTGTGTTGCTTGTG 57.012 42.857 0.00 0.00 0.00 3.33
3805 4786 5.466819 CCGAGTACTGTTACAGATTTCACA 58.533 41.667 20.07 0.00 35.18 3.58
3925 4906 1.386155 CCAGGTTATGGGGTTGGCA 59.614 57.895 0.00 0.00 46.36 4.92
3934 4915 6.315393 AGTTAACGTAGCATTTCCAGGTTATG 59.685 38.462 0.00 0.00 0.00 1.90
3936 4917 5.797051 AGTTAACGTAGCATTTCCAGGTTA 58.203 37.500 0.00 0.00 0.00 2.85
3939 4920 5.416947 AGTAGTTAACGTAGCATTTCCAGG 58.583 41.667 0.00 0.00 0.00 4.45
3940 4921 6.963049 AAGTAGTTAACGTAGCATTTCCAG 57.037 37.500 0.00 0.00 0.00 3.86
3941 4922 6.369615 GGAAAGTAGTTAACGTAGCATTTCCA 59.630 38.462 22.04 0.00 41.66 3.53
3942 4923 6.183360 GGGAAAGTAGTTAACGTAGCATTTCC 60.183 42.308 20.45 20.45 41.43 3.13
3945 4926 5.797051 TGGGAAAGTAGTTAACGTAGCATT 58.203 37.500 0.00 0.00 0.00 3.56
3948 4929 4.179298 CCTGGGAAAGTAGTTAACGTAGC 58.821 47.826 0.00 0.00 0.00 3.58
3949 4930 5.397142 ACCTGGGAAAGTAGTTAACGTAG 57.603 43.478 0.00 0.00 0.00 3.51
3951 4932 4.694760 AACCTGGGAAAGTAGTTAACGT 57.305 40.909 0.00 0.00 0.00 3.99
3952 4933 4.453478 GGAAACCTGGGAAAGTAGTTAACG 59.547 45.833 0.00 0.00 0.00 3.18
3956 5055 7.766736 ATATAGGAAACCTGGGAAAGTAGTT 57.233 36.000 0.00 0.00 34.61 2.24
3964 5063 8.344939 AGAAACAATATATAGGAAACCTGGGA 57.655 34.615 0.00 0.00 34.61 4.37
3992 5091 9.353431 TCATGGTCAAACCTACTTATATACGTA 57.647 33.333 0.00 0.00 39.58 3.57
3993 5092 8.139989 GTCATGGTCAAACCTACTTATATACGT 58.860 37.037 0.00 0.00 39.58 3.57
3994 5093 8.358148 AGTCATGGTCAAACCTACTTATATACG 58.642 37.037 0.00 0.00 39.58 3.06
4000 5099 6.043938 AGGAAAGTCATGGTCAAACCTACTTA 59.956 38.462 10.41 0.00 39.58 2.24
4005 5104 3.490348 CAGGAAAGTCATGGTCAAACCT 58.510 45.455 0.00 0.00 39.58 3.50
4022 5121 2.037144 GTACCGGAGATAAAGCCAGGA 58.963 52.381 9.46 0.00 0.00 3.86
4025 5124 0.748450 CGGTACCGGAGATAAAGCCA 59.252 55.000 27.00 0.00 35.56 4.75
4027 5126 2.673833 CATCGGTACCGGAGATAAAGC 58.326 52.381 32.80 0.00 40.25 3.51
4028 5127 2.673833 GCATCGGTACCGGAGATAAAG 58.326 52.381 32.80 11.56 40.25 1.85
4029 5128 1.001048 CGCATCGGTACCGGAGATAAA 60.001 52.381 32.80 13.28 40.25 1.40
4031 5130 0.535780 ACGCATCGGTACCGGAGATA 60.536 55.000 32.80 14.85 40.25 1.98
4032 5131 1.389609 AACGCATCGGTACCGGAGAT 61.390 55.000 32.80 17.32 40.25 2.75
4033 5132 2.048023 AACGCATCGGTACCGGAGA 61.048 57.895 32.80 15.65 40.25 3.71
4034 5133 1.876714 CAACGCATCGGTACCGGAG 60.877 63.158 32.80 24.95 40.25 4.63
4035 5134 2.182284 CAACGCATCGGTACCGGA 59.818 61.111 32.80 20.02 40.25 5.14
4036 5135 2.162754 GTCAACGCATCGGTACCGG 61.163 63.158 32.80 19.41 40.25 5.28
4037 5136 1.009903 TTGTCAACGCATCGGTACCG 61.010 55.000 28.66 28.66 41.35 4.02
4086 5185 1.447838 GATGATCACCGTGTGGCGT 60.448 57.895 0.00 0.13 39.70 5.68
4095 5194 2.240500 GCACGAGCGGATGATCACC 61.241 63.158 0.00 0.51 0.00 4.02
4105 5204 1.133253 CAGTTGAATGGCACGAGCG 59.867 57.895 0.00 0.00 43.41 5.03
4123 5222 1.066430 TCGGCTGTGGAGAATGGTAAC 60.066 52.381 0.00 0.00 0.00 2.50
4124 5223 1.271856 TCGGCTGTGGAGAATGGTAA 58.728 50.000 0.00 0.00 0.00 2.85
4125 5224 1.271856 TTCGGCTGTGGAGAATGGTA 58.728 50.000 0.00 0.00 0.00 3.25
4126 5225 0.620556 ATTCGGCTGTGGAGAATGGT 59.379 50.000 0.00 0.00 33.81 3.55
4127 5226 2.620251 TATTCGGCTGTGGAGAATGG 57.380 50.000 0.00 0.00 36.23 3.16
4128 5227 3.997021 GGTATATTCGGCTGTGGAGAATG 59.003 47.826 0.00 0.00 36.23 2.67
4129 5228 3.646162 TGGTATATTCGGCTGTGGAGAAT 59.354 43.478 0.00 0.00 38.12 2.40
4130 5229 3.035363 TGGTATATTCGGCTGTGGAGAA 58.965 45.455 0.00 0.00 0.00 2.87
4131 5230 2.673258 TGGTATATTCGGCTGTGGAGA 58.327 47.619 0.00 0.00 0.00 3.71
4132 5231 3.469008 TTGGTATATTCGGCTGTGGAG 57.531 47.619 0.00 0.00 0.00 3.86
4133 5232 5.163290 TGTTATTGGTATATTCGGCTGTGGA 60.163 40.000 0.00 0.00 0.00 4.02
4134 5233 5.060506 TGTTATTGGTATATTCGGCTGTGG 58.939 41.667 0.00 0.00 0.00 4.17
4135 5234 6.612247 TTGTTATTGGTATATTCGGCTGTG 57.388 37.500 0.00 0.00 0.00 3.66
4136 5235 6.600032 TGTTTGTTATTGGTATATTCGGCTGT 59.400 34.615 0.00 0.00 0.00 4.40
4137 5236 7.022055 TGTTTGTTATTGGTATATTCGGCTG 57.978 36.000 0.00 0.00 0.00 4.85
4138 5237 6.238648 GCTGTTTGTTATTGGTATATTCGGCT 60.239 38.462 0.00 0.00 0.00 5.52
4139 5238 5.912955 GCTGTTTGTTATTGGTATATTCGGC 59.087 40.000 0.00 0.00 0.00 5.54
4140 5239 7.259290 AGCTGTTTGTTATTGGTATATTCGG 57.741 36.000 0.00 0.00 0.00 4.30
4141 5240 7.042992 TCGAGCTGTTTGTTATTGGTATATTCG 60.043 37.037 0.00 0.00 0.00 3.34
4142 5241 8.062448 GTCGAGCTGTTTGTTATTGGTATATTC 58.938 37.037 0.00 0.00 0.00 1.75
4143 5242 7.769044 AGTCGAGCTGTTTGTTATTGGTATATT 59.231 33.333 0.00 0.00 0.00 1.28
4144 5243 7.272978 AGTCGAGCTGTTTGTTATTGGTATAT 58.727 34.615 0.00 0.00 0.00 0.86
4145 5244 6.636705 AGTCGAGCTGTTTGTTATTGGTATA 58.363 36.000 0.00 0.00 0.00 1.47
4146 5245 5.488341 AGTCGAGCTGTTTGTTATTGGTAT 58.512 37.500 0.00 0.00 0.00 2.73
4147 5246 4.890088 AGTCGAGCTGTTTGTTATTGGTA 58.110 39.130 0.00 0.00 0.00 3.25
4148 5247 3.740115 AGTCGAGCTGTTTGTTATTGGT 58.260 40.909 0.00 0.00 0.00 3.67
4149 5248 3.997021 AGAGTCGAGCTGTTTGTTATTGG 59.003 43.478 0.00 0.00 0.00 3.16
4152 5251 7.255312 CCTCTATAGAGTCGAGCTGTTTGTTAT 60.255 40.741 24.80 0.00 40.48 1.89
4167 5266 1.893210 GCCATCCCGCCTCTATAGAGT 60.893 57.143 24.80 5.83 40.48 3.24
4170 5269 1.901085 GGCCATCCCGCCTCTATAG 59.099 63.158 0.00 0.00 46.10 1.31
4220 5319 2.540265 ATGGCTGCTGCTACATACTC 57.460 50.000 15.64 0.00 39.59 2.59
4221 5320 4.380973 CGTATATGGCTGCTGCTACATACT 60.381 45.833 21.82 11.98 39.59 2.12
4222 5321 3.859961 CGTATATGGCTGCTGCTACATAC 59.140 47.826 16.88 16.88 39.59 2.39
4223 5322 3.676049 GCGTATATGGCTGCTGCTACATA 60.676 47.826 15.64 14.62 39.59 2.29
4224 5323 2.932622 GCGTATATGGCTGCTGCTACAT 60.933 50.000 15.64 12.99 39.59 2.29
4225 5324 1.605457 GCGTATATGGCTGCTGCTACA 60.605 52.381 15.64 6.27 39.59 2.74
4226 5325 1.071605 GCGTATATGGCTGCTGCTAC 58.928 55.000 15.64 8.79 39.59 3.58
4227 5326 0.969149 AGCGTATATGGCTGCTGCTA 59.031 50.000 15.64 10.07 39.77 3.49
4228 5327 1.750930 AGCGTATATGGCTGCTGCT 59.249 52.632 15.64 0.00 39.77 4.24
4229 5328 4.368391 AGCGTATATGGCTGCTGC 57.632 55.556 7.10 7.10 39.77 5.25
4234 5333 2.343758 CGGGCAGCGTATATGGCT 59.656 61.111 0.00 0.00 42.51 4.75
4268 5367 1.449246 CCGCTGAAGCTTCTCCCTG 60.449 63.158 26.09 11.78 39.32 4.45
4269 5368 1.915769 ACCGCTGAAGCTTCTCCCT 60.916 57.895 26.09 3.50 39.32 4.20
4286 5385 2.100631 CATCACGGACTTCGGGCAC 61.101 63.158 0.00 0.00 43.08 5.01
4287 5386 2.107041 AACATCACGGACTTCGGGCA 62.107 55.000 0.00 0.00 43.08 5.36
4288 5387 1.359459 GAACATCACGGACTTCGGGC 61.359 60.000 0.00 0.00 43.08 6.13
4289 5388 0.739813 GGAACATCACGGACTTCGGG 60.740 60.000 0.00 0.00 45.15 5.14
4290 5389 0.246635 AGGAACATCACGGACTTCGG 59.753 55.000 0.00 0.00 44.45 4.30
4291 5390 1.630148 GAGGAACATCACGGACTTCG 58.370 55.000 0.00 0.00 45.88 3.79
4292 5391 1.630148 CGAGGAACATCACGGACTTC 58.370 55.000 0.00 0.00 0.00 3.01
4293 5392 0.246635 CCGAGGAACATCACGGACTT 59.753 55.000 0.00 0.00 46.94 3.01
4294 5393 0.898789 ACCGAGGAACATCACGGACT 60.899 55.000 17.30 0.00 46.94 3.85
4295 5394 0.037605 AACCGAGGAACATCACGGAC 60.038 55.000 17.30 0.00 46.94 4.79
4296 5395 0.037697 CAACCGAGGAACATCACGGA 60.038 55.000 17.30 0.00 46.94 4.69
4298 5397 1.635663 GCCAACCGAGGAACATCACG 61.636 60.000 0.00 0.00 0.00 4.35
4299 5398 1.635663 CGCCAACCGAGGAACATCAC 61.636 60.000 0.00 0.00 40.02 3.06
4300 5399 1.375396 CGCCAACCGAGGAACATCA 60.375 57.895 0.00 0.00 40.02 3.07
4301 5400 2.750888 GCGCCAACCGAGGAACATC 61.751 63.158 0.00 0.00 40.02 3.06
4302 5401 1.895020 TAGCGCCAACCGAGGAACAT 61.895 55.000 2.29 0.00 40.02 2.71
4303 5402 2.575893 TAGCGCCAACCGAGGAACA 61.576 57.895 2.29 0.00 40.02 3.18
4304 5403 2.098831 GTAGCGCCAACCGAGGAAC 61.099 63.158 2.29 0.00 40.02 3.62
4305 5404 2.263540 GTAGCGCCAACCGAGGAA 59.736 61.111 2.29 0.00 40.02 3.36
4306 5405 3.766691 GGTAGCGCCAACCGAGGA 61.767 66.667 13.23 0.00 40.02 3.71
4307 5406 4.077184 TGGTAGCGCCAACCGAGG 62.077 66.667 20.92 0.00 45.94 4.63
4319 5418 3.799232 GCGGATTAGTAAGGCTGTGGTAG 60.799 52.174 0.00 0.00 0.00 3.18
4320 5419 2.101917 GCGGATTAGTAAGGCTGTGGTA 59.898 50.000 0.00 0.00 0.00 3.25
4321 5420 1.134491 GCGGATTAGTAAGGCTGTGGT 60.134 52.381 0.00 0.00 0.00 4.16
4322 5421 1.134521 TGCGGATTAGTAAGGCTGTGG 60.135 52.381 0.00 0.00 0.00 4.17
4323 5422 1.933853 GTGCGGATTAGTAAGGCTGTG 59.066 52.381 0.00 0.00 0.00 3.66
4324 5423 1.134491 GGTGCGGATTAGTAAGGCTGT 60.134 52.381 0.00 0.00 0.00 4.40
4325 5424 1.583054 GGTGCGGATTAGTAAGGCTG 58.417 55.000 0.00 0.00 0.00 4.85
4326 5425 0.104304 CGGTGCGGATTAGTAAGGCT 59.896 55.000 5.36 0.00 0.00 4.58
4327 5426 2.601562 CGGTGCGGATTAGTAAGGC 58.398 57.895 0.00 0.00 0.00 4.35
4340 5439 1.670083 ACTTTCGTTAGCCCGGTGC 60.670 57.895 0.00 3.33 41.71 5.01
4341 5440 1.908066 GCACTTTCGTTAGCCCGGTG 61.908 60.000 0.00 0.00 0.00 4.94
4342 5441 1.670083 GCACTTTCGTTAGCCCGGT 60.670 57.895 0.00 0.00 0.00 5.28
4343 5442 2.396157 GGCACTTTCGTTAGCCCGG 61.396 63.158 0.00 0.00 41.25 5.73
4344 5443 1.635663 CTGGCACTTTCGTTAGCCCG 61.636 60.000 0.00 0.00 46.45 6.13
4345 5444 1.923227 GCTGGCACTTTCGTTAGCCC 61.923 60.000 0.00 0.00 46.45 5.19
4347 5446 0.955919 AGGCTGGCACTTTCGTTAGC 60.956 55.000 3.38 0.00 0.00 3.09
4348 5447 0.798776 CAGGCTGGCACTTTCGTTAG 59.201 55.000 6.61 0.00 0.00 2.34
4349 5448 0.394938 TCAGGCTGGCACTTTCGTTA 59.605 50.000 15.73 0.00 0.00 3.18
4350 5449 0.250901 ATCAGGCTGGCACTTTCGTT 60.251 50.000 15.73 0.00 0.00 3.85
4351 5450 0.957395 CATCAGGCTGGCACTTTCGT 60.957 55.000 15.73 0.00 0.00 3.85
4352 5451 1.651240 CCATCAGGCTGGCACTTTCG 61.651 60.000 15.73 0.00 0.00 3.46
4353 5452 2.187073 CCATCAGGCTGGCACTTTC 58.813 57.895 15.73 0.00 0.00 2.62
4354 5453 4.428845 CCATCAGGCTGGCACTTT 57.571 55.556 15.73 0.00 0.00 2.66
4378 5580 7.218393 CCCGTTGAGAAAATATATCGATCGTAG 59.782 40.741 15.94 0.00 0.00 3.51
4417 5620 2.509336 CATGGACGACGTGCTCCC 60.509 66.667 20.39 8.70 0.00 4.30
4446 5649 2.842936 CCTACGCCCCTACCCTGG 60.843 72.222 0.00 0.00 0.00 4.45
4471 5688 2.877866 GCTACCCTGAGCATAGACCTA 58.122 52.381 0.00 0.00 42.36 3.08
4484 5701 3.141488 CTCCGTCGCTGCTACCCT 61.141 66.667 0.00 0.00 0.00 4.34
4519 5748 1.068083 GAGATCGCGAATCCCTGCA 59.932 57.895 15.24 0.00 34.67 4.41
4541 5770 8.116651 TCTTCTGTCTCTGTATATATTCTGCC 57.883 38.462 0.00 0.00 0.00 4.85
4578 5807 1.306970 CCCCTGGTACGTCCTCTCT 59.693 63.158 0.00 0.00 37.07 3.10
4582 5811 3.001406 GCACCCCTGGTACGTCCT 61.001 66.667 0.00 0.00 32.11 3.85
4629 5858 8.849168 TGTAGCTACTCTCACTAGTACTAGTAG 58.151 40.741 30.34 25.63 43.98 2.57
4630 5859 8.759481 TGTAGCTACTCTCACTAGTACTAGTA 57.241 38.462 30.34 17.18 43.98 1.82
4631 5860 7.658525 TGTAGCTACTCTCACTAGTACTAGT 57.341 40.000 26.61 26.61 46.52 2.57
4632 5861 6.643770 GCTGTAGCTACTCTCACTAGTACTAG 59.356 46.154 25.30 25.30 37.35 2.57
4633 5862 6.097981 TGCTGTAGCTACTCTCACTAGTACTA 59.902 42.308 23.84 1.89 42.66 1.82
4634 5863 5.104859 TGCTGTAGCTACTCTCACTAGTACT 60.105 44.000 23.84 0.00 42.66 2.73
4635 5864 5.117584 TGCTGTAGCTACTCTCACTAGTAC 58.882 45.833 23.84 0.00 42.66 2.73
4673 5902 2.106074 GCATCGATCACGCAACCCA 61.106 57.895 0.00 0.00 39.58 4.51
4674 5903 2.106074 TGCATCGATCACGCAACCC 61.106 57.895 6.44 0.00 39.58 4.11
4677 5906 1.969809 GCAGTGCATCGATCACGCAA 61.970 55.000 22.78 6.91 39.31 4.85
4678 5907 2.455291 GCAGTGCATCGATCACGCA 61.455 57.895 22.78 16.74 39.31 5.24
4679 5908 2.322422 GCAGTGCATCGATCACGC 59.678 61.111 11.09 17.65 39.31 5.34
4680 5909 1.346197 GTGCAGTGCATCGATCACG 59.654 57.895 22.87 13.92 41.91 4.35
4681 5910 0.095935 GTGTGCAGTGCATCGATCAC 59.904 55.000 22.87 19.35 41.91 3.06
4682 5911 1.353609 CGTGTGCAGTGCATCGATCA 61.354 55.000 28.77 17.56 41.91 2.92
4683 5912 1.346197 CGTGTGCAGTGCATCGATC 59.654 57.895 28.77 15.46 41.91 3.69
4684 5913 1.354337 GACGTGTGCAGTGCATCGAT 61.354 55.000 34.63 24.39 41.91 3.59
4685 5914 2.021584 GACGTGTGCAGTGCATCGA 61.022 57.895 34.63 17.74 41.91 3.59
4686 5915 1.830368 TTGACGTGTGCAGTGCATCG 61.830 55.000 29.90 29.90 41.91 3.84
4687 5916 0.518636 ATTGACGTGTGCAGTGCATC 59.481 50.000 22.87 15.09 41.91 3.91
4688 5917 0.518636 GATTGACGTGTGCAGTGCAT 59.481 50.000 22.87 4.55 41.91 3.96
4689 5918 1.506309 GGATTGACGTGTGCAGTGCA 61.506 55.000 15.37 15.37 35.60 4.57
4690 5919 1.207593 GGATTGACGTGTGCAGTGC 59.792 57.895 8.58 8.58 0.00 4.40
4691 5920 1.492873 CGGATTGACGTGTGCAGTG 59.507 57.895 0.00 0.00 0.00 3.66
4692 5921 1.667830 CCGGATTGACGTGTGCAGT 60.668 57.895 0.00 0.00 0.00 4.40
4693 5922 2.390599 CCCGGATTGACGTGTGCAG 61.391 63.158 0.73 0.00 0.00 4.41
4694 5923 2.358125 CCCGGATTGACGTGTGCA 60.358 61.111 0.73 0.00 0.00 4.57
4695 5924 3.799755 GCCCGGATTGACGTGTGC 61.800 66.667 0.73 0.00 0.00 4.57
4696 5925 2.822418 TACGCCCGGATTGACGTGTG 62.822 60.000 0.73 0.00 39.43 3.82
4697 5926 2.157305 TTACGCCCGGATTGACGTGT 62.157 55.000 0.73 0.00 39.43 4.49
4698 5927 0.808453 ATTACGCCCGGATTGACGTG 60.808 55.000 0.73 0.00 39.43 4.49
4699 5928 0.529119 GATTACGCCCGGATTGACGT 60.529 55.000 0.73 7.36 42.22 4.34
4700 5929 1.219522 GGATTACGCCCGGATTGACG 61.220 60.000 0.73 0.51 0.00 4.35
4701 5930 0.179067 TGGATTACGCCCGGATTGAC 60.179 55.000 0.73 0.00 0.00 3.18
4702 5931 0.105964 CTGGATTACGCCCGGATTGA 59.894 55.000 0.73 0.00 31.68 2.57
4703 5932 1.507141 GCTGGATTACGCCCGGATTG 61.507 60.000 0.73 0.00 31.68 2.67
4704 5933 1.227853 GCTGGATTACGCCCGGATT 60.228 57.895 0.73 0.00 31.68 3.01
4705 5934 2.426023 GCTGGATTACGCCCGGAT 59.574 61.111 0.73 0.00 31.68 4.18
4706 5935 4.215742 CGCTGGATTACGCCCGGA 62.216 66.667 0.73 0.00 31.68 5.14
4707 5936 2.632136 TTACGCTGGATTACGCCCGG 62.632 60.000 0.00 0.00 0.00 5.73
4708 5937 0.599204 ATTACGCTGGATTACGCCCG 60.599 55.000 0.00 0.00 0.00 6.13
4709 5938 1.145803 GATTACGCTGGATTACGCCC 58.854 55.000 0.00 0.00 0.00 6.13
4710 5939 1.145803 GGATTACGCTGGATTACGCC 58.854 55.000 0.00 0.00 0.00 5.68
4711 5940 1.860676 TGGATTACGCTGGATTACGC 58.139 50.000 0.00 0.00 0.00 4.42
4712 5941 3.191669 TGTTGGATTACGCTGGATTACG 58.808 45.455 0.00 0.00 0.00 3.18
4713 5942 3.002348 GCTGTTGGATTACGCTGGATTAC 59.998 47.826 0.00 0.00 0.00 1.89
4714 5943 3.202906 GCTGTTGGATTACGCTGGATTA 58.797 45.455 0.00 0.00 0.00 1.75
4715 5944 2.017049 GCTGTTGGATTACGCTGGATT 58.983 47.619 0.00 0.00 0.00 3.01
4716 5945 1.668419 GCTGTTGGATTACGCTGGAT 58.332 50.000 0.00 0.00 0.00 3.41
4717 5946 0.392461 GGCTGTTGGATTACGCTGGA 60.392 55.000 0.00 0.00 0.00 3.86
4718 5947 1.705337 CGGCTGTTGGATTACGCTGG 61.705 60.000 0.00 0.00 0.00 4.85
4719 5948 0.739462 TCGGCTGTTGGATTACGCTG 60.739 55.000 0.00 0.00 0.00 5.18
4720 5949 0.178068 ATCGGCTGTTGGATTACGCT 59.822 50.000 0.00 0.00 0.00 5.07
4721 5950 0.304705 CATCGGCTGTTGGATTACGC 59.695 55.000 0.00 0.00 0.00 4.42
4722 5951 0.937304 CCATCGGCTGTTGGATTACG 59.063 55.000 16.50 0.00 37.16 3.18
4723 5952 2.325583 TCCATCGGCTGTTGGATTAC 57.674 50.000 19.53 0.00 38.72 1.89
4724 5953 3.013921 GTTTCCATCGGCTGTTGGATTA 58.986 45.455 23.08 13.20 42.22 1.75
4725 5954 1.818674 GTTTCCATCGGCTGTTGGATT 59.181 47.619 23.08 0.00 42.22 3.01
4726 5955 1.463674 GTTTCCATCGGCTGTTGGAT 58.536 50.000 23.08 0.00 42.22 3.41
4727 5956 0.608035 GGTTTCCATCGGCTGTTGGA 60.608 55.000 19.53 19.53 41.24 3.53
4728 5957 0.893270 TGGTTTCCATCGGCTGTTGG 60.893 55.000 15.51 15.51 36.46 3.77
4729 5958 0.240945 GTGGTTTCCATCGGCTGTTG 59.759 55.000 0.00 0.00 35.28 3.33
4730 5959 0.110486 AGTGGTTTCCATCGGCTGTT 59.890 50.000 0.00 0.00 35.28 3.16
4731 5960 0.606401 CAGTGGTTTCCATCGGCTGT 60.606 55.000 0.00 0.00 35.28 4.40
4732 5961 1.926511 GCAGTGGTTTCCATCGGCTG 61.927 60.000 0.00 0.00 35.28 4.85
4733 5962 1.675641 GCAGTGGTTTCCATCGGCT 60.676 57.895 0.00 0.00 35.28 5.52
4734 5963 2.877691 GCAGTGGTTTCCATCGGC 59.122 61.111 0.00 0.00 35.28 5.54
4735 5964 0.744414 ATCGCAGTGGTTTCCATCGG 60.744 55.000 0.00 0.00 35.28 4.18
4736 5965 1.086696 AATCGCAGTGGTTTCCATCG 58.913 50.000 0.00 0.00 35.28 3.84
4737 5966 2.083774 TCAATCGCAGTGGTTTCCATC 58.916 47.619 0.00 0.00 35.28 3.51
4738 5967 2.198827 TCAATCGCAGTGGTTTCCAT 57.801 45.000 0.00 0.00 35.28 3.41
4739 5968 1.879380 CTTCAATCGCAGTGGTTTCCA 59.121 47.619 0.00 0.00 0.00 3.53
4740 5969 1.401539 GCTTCAATCGCAGTGGTTTCC 60.402 52.381 0.00 0.00 0.00 3.13
4741 5970 1.401539 GGCTTCAATCGCAGTGGTTTC 60.402 52.381 0.00 0.00 0.00 2.78
4742 5971 0.598065 GGCTTCAATCGCAGTGGTTT 59.402 50.000 0.00 0.00 0.00 3.27
4743 5972 0.537143 TGGCTTCAATCGCAGTGGTT 60.537 50.000 0.00 0.00 0.00 3.67
4744 5973 0.537143 TTGGCTTCAATCGCAGTGGT 60.537 50.000 0.00 0.00 0.00 4.16
4745 5974 0.169672 CTTGGCTTCAATCGCAGTGG 59.830 55.000 0.00 0.00 0.00 4.00
4746 5975 0.877071 ACTTGGCTTCAATCGCAGTG 59.123 50.000 0.00 0.00 0.00 3.66
4747 5976 2.028112 TCTACTTGGCTTCAATCGCAGT 60.028 45.455 0.00 0.00 0.00 4.40
4748 5977 2.621338 TCTACTTGGCTTCAATCGCAG 58.379 47.619 0.00 0.00 0.00 5.18
4749 5978 2.760634 TCTACTTGGCTTCAATCGCA 57.239 45.000 0.00 0.00 0.00 5.10
4750 5979 5.502606 GTTTATCTACTTGGCTTCAATCGC 58.497 41.667 0.00 0.00 0.00 4.58
4751 5980 5.728255 CGTTTATCTACTTGGCTTCAATCG 58.272 41.667 0.00 0.00 0.00 3.34
4752 5981 5.064707 TGCGTTTATCTACTTGGCTTCAATC 59.935 40.000 0.00 0.00 0.00 2.67
4753 5982 4.941263 TGCGTTTATCTACTTGGCTTCAAT 59.059 37.500 0.00 0.00 0.00 2.57
4754 5983 4.153475 GTGCGTTTATCTACTTGGCTTCAA 59.847 41.667 0.00 0.00 0.00 2.69
4755 5984 3.682858 GTGCGTTTATCTACTTGGCTTCA 59.317 43.478 0.00 0.00 0.00 3.02
4756 5985 3.933332 AGTGCGTTTATCTACTTGGCTTC 59.067 43.478 0.00 0.00 0.00 3.86
4757 5986 3.939066 AGTGCGTTTATCTACTTGGCTT 58.061 40.909 0.00 0.00 0.00 4.35
4758 5987 3.611766 AGTGCGTTTATCTACTTGGCT 57.388 42.857 0.00 0.00 0.00 4.75
4759 5988 4.648970 GAAAGTGCGTTTATCTACTTGGC 58.351 43.478 0.00 0.00 33.95 4.52
4760 5989 4.387862 ACGAAAGTGCGTTTATCTACTTGG 59.612 41.667 0.00 0.00 46.97 3.61
4761 5990 5.511088 ACGAAAGTGCGTTTATCTACTTG 57.489 39.130 0.00 0.00 46.97 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.