Multiple sequence alignment - TraesCS3B01G447500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G447500 chr3B 100.000 3116 0 0 1 3116 686523485 686526600 0.000000e+00 5755.0
1 TraesCS3B01G447500 chr3B 82.222 2070 192 102 380 2351 686491507 686493498 0.000000e+00 1622.0
2 TraesCS3B01G447500 chr3B 80.000 460 67 15 2658 3102 405432770 405433219 1.800000e-82 316.0
3 TraesCS3B01G447500 chr3B 96.063 127 5 0 2473 2599 797463998 797463872 1.130000e-49 207.0
4 TraesCS3B01G447500 chr3B 92.701 137 10 0 2463 2599 747533834 747533698 6.820000e-47 198.0
5 TraesCS3B01G447500 chr3D 92.646 2230 80 33 231 2428 520862014 520864191 0.000000e+00 3133.0
6 TraesCS3B01G447500 chr3D 83.775 1812 146 76 626 2351 520823825 520825574 0.000000e+00 1581.0
7 TraesCS3B01G447500 chr3D 87.868 544 37 13 2598 3116 520864262 520864801 2.050000e-171 612.0
8 TraesCS3B01G447500 chr3D 83.014 418 60 8 2657 3068 373840215 373839803 4.910000e-98 368.0
9 TraesCS3B01G447500 chr3D 76.377 690 141 17 1385 2069 454219617 454220289 4.940000e-93 351.0
10 TraesCS3B01G447500 chr3D 93.571 140 8 1 1 139 520861819 520861958 1.130000e-49 207.0
11 TraesCS3B01G447500 chr3A 93.153 1519 64 17 970 2473 656423893 656425386 0.000000e+00 2193.0
12 TraesCS3B01G447500 chr3A 92.737 1363 65 23 970 2322 656254243 656255581 0.000000e+00 1938.0
13 TraesCS3B01G447500 chr3A 84.104 1774 151 75 637 2322 656134429 656136159 0.000000e+00 1592.0
14 TraesCS3B01G447500 chr3A 89.155 793 52 23 1540 2322 656339249 656340017 0.000000e+00 957.0
15 TraesCS3B01G447500 chr3A 87.921 712 40 20 231 927 656253565 656254245 0.000000e+00 797.0
16 TraesCS3B01G447500 chr3A 89.041 657 30 19 281 927 656423271 656423895 0.000000e+00 776.0
17 TraesCS3B01G447500 chr3A 75.691 687 146 16 1385 2067 596357498 596358167 1.080000e-84 324.0
18 TraesCS3B01G447500 chr3A 85.380 342 17 13 281 617 656338938 656339251 1.080000e-84 324.0
19 TraesCS3B01G447500 chr3A 93.525 139 9 0 2465 2603 469077567 469077429 1.130000e-49 207.0
20 TraesCS3B01G447500 chr3A 95.349 129 6 0 2473 2601 187060720 187060592 4.070000e-49 206.0
21 TraesCS3B01G447500 chr3A 90.909 77 7 0 1 77 656251920 656251996 1.530000e-18 104.0
22 TraesCS3B01G447500 chr3A 93.846 65 3 1 76 139 656253370 656253434 2.560000e-16 97.1
23 TraesCS3B01G447500 chr7A 83.913 460 53 15 2658 3102 730735805 730735352 1.340000e-113 420.0
24 TraesCS3B01G447500 chr7A 79.565 460 68 16 2659 3102 733830622 733830173 3.900000e-79 305.0
25 TraesCS3B01G447500 chr7A 72.823 666 152 23 1396 2051 262852739 262853385 1.900000e-47 200.0
26 TraesCS3B01G447500 chr4A 83.686 472 49 18 2658 3102 719148876 719149346 1.340000e-113 420.0
27 TraesCS3B01G447500 chr4A 90.141 71 5 2 1386 1455 547979937 547979868 1.190000e-14 91.6
28 TraesCS3B01G447500 chr2A 84.770 348 34 7 2767 3101 81526520 81526179 6.440000e-87 331.0
29 TraesCS3B01G447500 chr5D 80.260 461 68 15 2661 3102 395694813 395695269 3.000000e-85 326.0
30 TraesCS3B01G447500 chr5D 83.951 324 43 6 2658 2977 374263375 374263693 5.050000e-78 302.0
31 TraesCS3B01G447500 chr5D 75.167 600 104 36 1458 2044 75997828 75997261 1.120000e-59 241.0
32 TraesCS3B01G447500 chr5D 72.754 668 155 22 1396 2054 238670169 238669520 1.900000e-47 200.0
33 TraesCS3B01G447500 chrUn 85.380 342 17 13 281 617 478590719 478591032 1.080000e-84 324.0
34 TraesCS3B01G447500 chr5B 78.664 464 71 16 2661 3102 475981596 475982053 1.830000e-72 283.0
35 TraesCS3B01G447500 chr5B 92.908 141 8 2 2473 2611 555175729 555175589 1.470000e-48 204.0
36 TraesCS3B01G447500 chr6B 95.312 128 6 0 2473 2600 101546295 101546168 1.470000e-48 204.0
37 TraesCS3B01G447500 chr6B 93.333 60 3 1 146 204 213322007 213321948 1.540000e-13 87.9
38 TraesCS3B01G447500 chr5A 92.806 139 9 1 2469 2606 583158642 583158504 1.900000e-47 200.0
39 TraesCS3B01G447500 chr5A 73.752 541 108 28 1460 1992 71453624 71453110 6.860000e-42 182.0
40 TraesCS3B01G447500 chr1B 92.754 138 10 0 2466 2603 518809541 518809678 1.900000e-47 200.0
41 TraesCS3B01G447500 chr1B 92.537 67 3 2 140 205 601271056 601270991 9.200000e-16 95.3
42 TraesCS3B01G447500 chr1B 93.443 61 3 1 146 205 458379777 458379717 4.280000e-14 89.8
43 TraesCS3B01G447500 chr1D 93.893 131 8 0 2473 2603 8327242 8327372 6.820000e-47 198.0
44 TraesCS3B01G447500 chr4D 95.652 69 2 1 140 207 215145063 215145131 3.290000e-20 110.0
45 TraesCS3B01G447500 chr6D 95.588 68 2 1 140 206 87457447 87457380 1.180000e-19 108.0
46 TraesCS3B01G447500 chr2B 96.610 59 1 1 146 203 35279044 35278986 2.560000e-16 97.1
47 TraesCS3B01G447500 chr2B 92.647 68 4 1 140 206 35311357 35311290 2.560000e-16 97.1
48 TraesCS3B01G447500 chr2D 90.411 73 5 2 137 207 313442725 313442797 9.200000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G447500 chr3B 686523485 686526600 3115 False 5755.000000 5755 100.000000 1 3116 1 chr3B.!!$F3 3115
1 TraesCS3B01G447500 chr3B 686491507 686493498 1991 False 1622.000000 1622 82.222000 380 2351 1 chr3B.!!$F2 1971
2 TraesCS3B01G447500 chr3D 520823825 520825574 1749 False 1581.000000 1581 83.775000 626 2351 1 chr3D.!!$F2 1725
3 TraesCS3B01G447500 chr3D 520861819 520864801 2982 False 1317.333333 3133 91.361667 1 3116 3 chr3D.!!$F3 3115
4 TraesCS3B01G447500 chr3D 454219617 454220289 672 False 351.000000 351 76.377000 1385 2069 1 chr3D.!!$F1 684
5 TraesCS3B01G447500 chr3A 656134429 656136159 1730 False 1592.000000 1592 84.104000 637 2322 1 chr3A.!!$F2 1685
6 TraesCS3B01G447500 chr3A 656423271 656425386 2115 False 1484.500000 2193 91.097000 281 2473 2 chr3A.!!$F5 2192
7 TraesCS3B01G447500 chr3A 656251920 656255581 3661 False 734.025000 1938 91.353250 1 2322 4 chr3A.!!$F3 2321
8 TraesCS3B01G447500 chr3A 656338938 656340017 1079 False 640.500000 957 87.267500 281 2322 2 chr3A.!!$F4 2041
9 TraesCS3B01G447500 chr3A 596357498 596358167 669 False 324.000000 324 75.691000 1385 2067 1 chr3A.!!$F1 682
10 TraesCS3B01G447500 chr5D 75997261 75997828 567 True 241.000000 241 75.167000 1458 2044 1 chr5D.!!$R1 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
790 2344 0.042361 CGATTGCGCTGCTTCTCATC 60.042 55.0 9.73 0.0 0.0 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2478 4151 0.107848 ACAAGTATTTCCGGGCGGAG 60.108 55.0 0.0 0.0 46.06 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.712337 AGAGTGGACTAATTTCTGACCGAT 59.288 41.667 0.00 0.00 0.00 4.18
42 43 6.349363 GGACTAATTTCTGACCGATTTTGCTT 60.349 38.462 0.00 0.00 0.00 3.91
70 71 4.739716 GCAGTGGTAGACAACAACAAATTG 59.260 41.667 0.00 0.00 41.98 2.32
152 1529 8.414629 AATTTGTTAAAAGATCTCTTGCCTCT 57.585 30.769 0.00 0.00 36.12 3.69
153 1530 7.440523 TTTGTTAAAAGATCTCTTGCCTCTC 57.559 36.000 0.00 0.00 36.12 3.20
154 1531 5.171476 TGTTAAAAGATCTCTTGCCTCTCG 58.829 41.667 0.00 0.00 36.12 4.04
155 1532 5.047306 TGTTAAAAGATCTCTTGCCTCTCGA 60.047 40.000 0.00 0.00 36.12 4.04
156 1533 4.751767 AAAAGATCTCTTGCCTCTCGAT 57.248 40.909 0.00 0.00 36.12 3.59
157 1534 4.751767 AAAGATCTCTTGCCTCTCGATT 57.248 40.909 0.00 0.00 36.12 3.34
158 1535 3.731652 AGATCTCTTGCCTCTCGATTG 57.268 47.619 0.00 0.00 0.00 2.67
159 1536 3.030291 AGATCTCTTGCCTCTCGATTGT 58.970 45.455 0.00 0.00 0.00 2.71
160 1537 4.211125 AGATCTCTTGCCTCTCGATTGTA 58.789 43.478 0.00 0.00 0.00 2.41
161 1538 4.646945 AGATCTCTTGCCTCTCGATTGTAA 59.353 41.667 0.00 0.00 0.00 2.41
162 1539 4.111375 TCTCTTGCCTCTCGATTGTAAC 57.889 45.455 0.00 0.00 0.00 2.50
163 1540 3.119101 TCTCTTGCCTCTCGATTGTAACC 60.119 47.826 0.00 0.00 0.00 2.85
164 1541 2.832129 TCTTGCCTCTCGATTGTAACCT 59.168 45.455 0.00 0.00 0.00 3.50
165 1542 4.021229 TCTTGCCTCTCGATTGTAACCTA 58.979 43.478 0.00 0.00 0.00 3.08
166 1543 4.649674 TCTTGCCTCTCGATTGTAACCTAT 59.350 41.667 0.00 0.00 0.00 2.57
167 1544 5.128827 TCTTGCCTCTCGATTGTAACCTATT 59.871 40.000 0.00 0.00 0.00 1.73
168 1545 6.322969 TCTTGCCTCTCGATTGTAACCTATTA 59.677 38.462 0.00 0.00 0.00 0.98
169 1546 6.665992 TGCCTCTCGATTGTAACCTATTAT 57.334 37.500 0.00 0.00 0.00 1.28
170 1547 6.455647 TGCCTCTCGATTGTAACCTATTATG 58.544 40.000 0.00 0.00 0.00 1.90
171 1548 6.266786 TGCCTCTCGATTGTAACCTATTATGA 59.733 38.462 0.00 0.00 0.00 2.15
172 1549 7.039011 TGCCTCTCGATTGTAACCTATTATGAT 60.039 37.037 0.00 0.00 0.00 2.45
173 1550 7.276658 GCCTCTCGATTGTAACCTATTATGATG 59.723 40.741 0.00 0.00 0.00 3.07
174 1551 7.761704 CCTCTCGATTGTAACCTATTATGATGG 59.238 40.741 0.00 0.00 0.00 3.51
175 1552 8.417273 TCTCGATTGTAACCTATTATGATGGA 57.583 34.615 0.00 0.00 0.00 3.41
176 1553 8.866093 TCTCGATTGTAACCTATTATGATGGAA 58.134 33.333 0.00 0.00 0.00 3.53
177 1554 9.658799 CTCGATTGTAACCTATTATGATGGAAT 57.341 33.333 0.00 0.00 0.00 3.01
196 1573 9.387123 GATGGAATAAAACTCTTTTCATATCGC 57.613 33.333 0.00 0.00 34.19 4.58
197 1574 8.275015 TGGAATAAAACTCTTTTCATATCGCA 57.725 30.769 0.00 0.00 34.19 5.10
198 1575 8.735315 TGGAATAAAACTCTTTTCATATCGCAA 58.265 29.630 0.00 0.00 34.19 4.85
199 1576 9.567848 GGAATAAAACTCTTTTCATATCGCAAA 57.432 29.630 0.00 0.00 34.19 3.68
241 1717 5.642063 CCAACAGTAGACGATGGTAAAATGT 59.358 40.000 0.00 0.00 0.00 2.71
249 1725 7.076842 AGACGATGGTAAAATGTCAATTCTG 57.923 36.000 0.00 0.00 32.08 3.02
264 1749 7.615403 TGTCAATTCTGCTAATTACAGAGACT 58.385 34.615 20.70 10.53 44.55 3.24
271 1756 6.096141 TCTGCTAATTACAGAGACTCTTGAGG 59.904 42.308 0.98 0.00 39.21 3.86
272 1757 5.952347 TGCTAATTACAGAGACTCTTGAGGA 59.048 40.000 0.98 0.00 0.00 3.71
277 1762 4.390129 ACAGAGACTCTTGAGGAAGGTA 57.610 45.455 0.98 0.00 0.00 3.08
278 1763 4.742012 ACAGAGACTCTTGAGGAAGGTAA 58.258 43.478 0.98 0.00 0.00 2.85
279 1764 4.525100 ACAGAGACTCTTGAGGAAGGTAAC 59.475 45.833 0.98 0.00 0.00 2.50
282 1767 3.259625 AGACTCTTGAGGAAGGTAACAGC 59.740 47.826 2.55 0.00 41.41 4.40
289 1774 2.567615 GAGGAAGGTAACAGCTGAAGGA 59.432 50.000 23.35 0.00 41.41 3.36
291 1776 2.303311 GGAAGGTAACAGCTGAAGGAGT 59.697 50.000 23.35 0.56 41.41 3.85
302 1787 0.323302 TGAAGGAGTGCAATACCGCA 59.677 50.000 0.00 0.00 40.32 5.69
358 1843 1.447838 AGCCGGTGCAGTTACGATG 60.448 57.895 1.90 0.00 41.13 3.84
361 1846 0.390603 CCGGTGCAGTTACGATGGAA 60.391 55.000 0.00 0.00 0.00 3.53
439 1928 2.025727 GGTAGCGTCGTCATCCGG 59.974 66.667 0.00 0.00 37.11 5.14
442 1931 3.120979 TAGCGTCGTCATCCGGCAG 62.121 63.158 0.00 0.00 42.71 4.85
454 1943 4.332637 CGGCAGGCACAACAGCAC 62.333 66.667 0.00 0.00 35.83 4.40
455 1944 2.908940 GGCAGGCACAACAGCACT 60.909 61.111 0.00 0.00 35.83 4.40
457 1946 1.576421 GCAGGCACAACAGCACTAC 59.424 57.895 0.00 0.00 35.83 2.73
458 1947 1.862123 CAGGCACAACAGCACTACG 59.138 57.895 0.00 0.00 35.83 3.51
459 1948 1.961277 AGGCACAACAGCACTACGC 60.961 57.895 0.00 0.00 42.91 4.42
460 1949 2.250939 GGCACAACAGCACTACGCA 61.251 57.895 0.00 0.00 46.13 5.24
461 1950 1.082756 GCACAACAGCACTACGCAC 60.083 57.895 0.00 0.00 46.13 5.34
462 1951 1.201578 CACAACAGCACTACGCACG 59.798 57.895 0.00 0.00 46.13 5.34
463 1952 1.066752 ACAACAGCACTACGCACGA 59.933 52.632 0.00 0.00 46.13 4.35
464 1953 1.213094 ACAACAGCACTACGCACGAC 61.213 55.000 0.00 0.00 46.13 4.34
497 1990 3.169908 TCACCAGTAACTGCATCTACCA 58.830 45.455 0.00 0.00 0.00 3.25
498 1991 3.056107 TCACCAGTAACTGCATCTACCAC 60.056 47.826 0.00 0.00 0.00 4.16
506 1999 5.537300 AACTGCATCTACCACGATTCTAT 57.463 39.130 0.00 0.00 0.00 1.98
540 2033 1.206132 CCATAGAACGGCACACCTACA 59.794 52.381 0.00 0.00 0.00 2.74
598 2091 1.030457 GGAATGAATCAGGCCTGCAG 58.970 55.000 28.91 6.78 0.00 4.41
662 2174 2.828549 GTGGCCGCCCAATACCAG 60.829 66.667 4.45 0.00 44.33 4.00
772 2314 4.474846 CCCGCCGCAAACCAATCG 62.475 66.667 0.00 0.00 0.00 3.34
775 2317 1.136565 CGCCGCAAACCAATCGATT 59.863 52.632 4.39 4.39 0.00 3.34
787 2341 0.654683 AATCGATTGCGCTGCTTCTC 59.345 50.000 10.50 0.00 37.46 2.87
788 2342 0.460811 ATCGATTGCGCTGCTTCTCA 60.461 50.000 9.73 0.00 37.46 3.27
790 2344 0.042361 CGATTGCGCTGCTTCTCATC 60.042 55.000 9.73 0.00 0.00 2.92
792 2346 0.742281 ATTGCGCTGCTTCTCATCGT 60.742 50.000 9.73 0.00 36.74 3.73
793 2347 1.629345 TTGCGCTGCTTCTCATCGTG 61.629 55.000 9.73 0.00 36.74 4.35
794 2348 2.097038 GCGCTGCTTCTCATCGTGT 61.097 57.895 0.00 0.00 36.74 4.49
823 2384 1.279152 CTTCTCAGTGCTGCTCATCG 58.721 55.000 0.00 0.00 0.00 3.84
1234 2832 2.186160 CACTCCCACAACAAGCGCA 61.186 57.895 11.47 0.00 0.00 6.09
1369 2979 1.145156 CCCGGATTCATGTACGCCA 59.855 57.895 0.73 0.00 0.00 5.69
1688 3298 3.277742 GAACCTGCAACGTCGCGAC 62.278 63.158 28.96 28.96 33.35 5.19
2377 4024 3.445450 TGAGTACTGTTCAGAGATGGAGC 59.555 47.826 0.00 0.00 0.00 4.70
2395 4042 5.495640 TGGAGCAAGTGGTTTGAAATTTTT 58.504 33.333 0.00 0.00 39.21 1.94
2399 4046 6.841119 AGCAAGTGGTTTGAAATTTTTGAAC 58.159 32.000 0.00 0.00 39.21 3.18
2428 4075 3.189702 GCTTTTGCGGGTAAAGTCACATA 59.810 43.478 0.00 0.00 35.52 2.29
2472 4145 1.859302 TGGGCTGTGTTTTGTCCTTT 58.141 45.000 0.00 0.00 0.00 3.11
2473 4146 3.019799 TGGGCTGTGTTTTGTCCTTTA 57.980 42.857 0.00 0.00 0.00 1.85
2474 4147 2.691011 TGGGCTGTGTTTTGTCCTTTAC 59.309 45.455 0.00 0.00 0.00 2.01
2475 4148 2.956333 GGGCTGTGTTTTGTCCTTTACT 59.044 45.455 0.00 0.00 0.00 2.24
2476 4149 3.004419 GGGCTGTGTTTTGTCCTTTACTC 59.996 47.826 0.00 0.00 0.00 2.59
2477 4150 3.004419 GGCTGTGTTTTGTCCTTTACTCC 59.996 47.826 0.00 0.00 0.00 3.85
2478 4151 3.004419 GCTGTGTTTTGTCCTTTACTCCC 59.996 47.826 0.00 0.00 0.00 4.30
2479 4152 4.461198 CTGTGTTTTGTCCTTTACTCCCT 58.539 43.478 0.00 0.00 0.00 4.20
2480 4153 4.457466 TGTGTTTTGTCCTTTACTCCCTC 58.543 43.478 0.00 0.00 0.00 4.30
2481 4154 3.819337 GTGTTTTGTCCTTTACTCCCTCC 59.181 47.826 0.00 0.00 0.00 4.30
2482 4155 3.072211 GTTTTGTCCTTTACTCCCTCCG 58.928 50.000 0.00 0.00 0.00 4.63
2483 4156 0.611714 TTGTCCTTTACTCCCTCCGC 59.388 55.000 0.00 0.00 0.00 5.54
2484 4157 1.262640 TGTCCTTTACTCCCTCCGCC 61.263 60.000 0.00 0.00 0.00 6.13
2485 4158 1.688187 TCCTTTACTCCCTCCGCCC 60.688 63.158 0.00 0.00 0.00 6.13
2486 4159 2.499685 CTTTACTCCCTCCGCCCG 59.500 66.667 0.00 0.00 0.00 6.13
2487 4160 3.078836 TTTACTCCCTCCGCCCGG 61.079 66.667 0.00 0.00 0.00 5.73
2488 4161 3.605412 TTTACTCCCTCCGCCCGGA 62.605 63.158 0.73 9.31 42.90 5.14
2489 4162 3.605412 TTACTCCCTCCGCCCGGAA 62.605 63.158 0.73 0.00 44.66 4.30
2490 4163 3.605412 TACTCCCTCCGCCCGGAAA 62.605 63.158 0.73 0.00 44.66 3.13
2491 4164 2.884179 TACTCCCTCCGCCCGGAAAT 62.884 60.000 0.73 0.00 44.66 2.17
2492 4165 2.041715 TCCCTCCGCCCGGAAATA 60.042 61.111 0.73 0.00 44.66 1.40
2493 4166 2.110420 CCCTCCGCCCGGAAATAC 59.890 66.667 0.73 0.00 44.66 1.89
2494 4167 2.440817 CCCTCCGCCCGGAAATACT 61.441 63.158 0.73 0.00 44.66 2.12
2495 4168 1.525442 CCTCCGCCCGGAAATACTT 59.475 57.895 0.73 0.00 44.66 2.24
2496 4169 0.814010 CCTCCGCCCGGAAATACTTG 60.814 60.000 0.73 0.00 44.66 3.16
2497 4170 0.107848 CTCCGCCCGGAAATACTTGT 60.108 55.000 0.73 0.00 44.66 3.16
2498 4171 0.108041 TCCGCCCGGAAATACTTGTC 60.108 55.000 0.73 0.00 42.05 3.18
2499 4172 0.391927 CCGCCCGGAAATACTTGTCA 60.392 55.000 0.73 0.00 37.50 3.58
2500 4173 1.663695 CGCCCGGAAATACTTGTCAT 58.336 50.000 0.73 0.00 0.00 3.06
2501 4174 1.597663 CGCCCGGAAATACTTGTCATC 59.402 52.381 0.73 0.00 0.00 2.92
2502 4175 2.639065 GCCCGGAAATACTTGTCATCA 58.361 47.619 0.73 0.00 0.00 3.07
2503 4176 3.013921 GCCCGGAAATACTTGTCATCAA 58.986 45.455 0.73 0.00 0.00 2.57
2504 4177 3.442273 GCCCGGAAATACTTGTCATCAAA 59.558 43.478 0.73 0.00 32.87 2.69
2505 4178 4.082463 GCCCGGAAATACTTGTCATCAAAA 60.082 41.667 0.73 0.00 32.87 2.44
2506 4179 5.394115 GCCCGGAAATACTTGTCATCAAAAT 60.394 40.000 0.73 0.00 32.87 1.82
2507 4180 6.035843 CCCGGAAATACTTGTCATCAAAATG 58.964 40.000 0.73 0.00 32.87 2.32
2508 4181 6.127758 CCCGGAAATACTTGTCATCAAAATGA 60.128 38.462 0.73 0.00 39.63 2.57
2509 4182 7.312154 CCGGAAATACTTGTCATCAAAATGAA 58.688 34.615 0.00 0.00 43.42 2.57
2510 4183 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
2518 4191 9.918630 ACTTGTCATCAAAATGAATAAAAGAGG 57.081 29.630 0.00 0.00 43.42 3.69
2581 4254 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
2582 4255 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
2583 4256 9.474920 TTTGTCCATTTTGATGACAAGTATTTC 57.525 29.630 0.00 0.00 37.13 2.17
2584 4257 7.601856 TGTCCATTTTGATGACAAGTATTTCC 58.398 34.615 0.00 0.00 37.32 3.13
2585 4258 6.747280 GTCCATTTTGATGACAAGTATTTCCG 59.253 38.462 0.00 0.00 37.32 4.30
2586 4259 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
2587 4260 5.637006 TTTTGATGACAAGTATTTCCGGG 57.363 39.130 0.00 0.00 37.32 5.73
2588 4261 2.639065 TGATGACAAGTATTTCCGGGC 58.361 47.619 0.00 0.00 0.00 6.13
2589 4262 1.597663 GATGACAAGTATTTCCGGGCG 59.402 52.381 0.00 0.00 0.00 6.13
2590 4263 0.391927 TGACAAGTATTTCCGGGCGG 60.392 55.000 0.00 0.00 0.00 6.13
2591 4264 0.108041 GACAAGTATTTCCGGGCGGA 60.108 55.000 0.00 0.00 43.52 5.54
2592 4265 0.107848 ACAAGTATTTCCGGGCGGAG 60.108 55.000 0.00 0.00 46.06 4.63
2593 4266 0.814010 CAAGTATTTCCGGGCGGAGG 60.814 60.000 0.00 0.00 46.06 4.30
2594 4267 1.979619 AAGTATTTCCGGGCGGAGGG 61.980 60.000 0.00 0.00 46.06 4.30
2595 4268 2.041715 TATTTCCGGGCGGAGGGA 60.042 61.111 0.00 0.00 46.06 4.20
2596 4269 2.138179 TATTTCCGGGCGGAGGGAG 61.138 63.158 0.00 0.00 46.06 4.30
2635 4308 0.678048 CCTTTCAGGCCCACTAGCAC 60.678 60.000 0.00 0.00 0.00 4.40
2637 4310 2.463589 TTTCAGGCCCACTAGCACCG 62.464 60.000 0.00 0.00 0.00 4.94
2644 4317 0.741221 CCCACTAGCACCGAAGAAGC 60.741 60.000 0.00 0.00 0.00 3.86
2666 4348 1.529438 CGGCACACGTTGTCTGTATTT 59.471 47.619 0.00 0.00 37.93 1.40
2677 4359 9.393249 CACGTTGTCTGTATTTTGTCAAAATAT 57.607 29.630 25.97 10.65 43.13 1.28
2730 4412 9.458374 GAAAATAAAATGAAAAGGAGAACACGA 57.542 29.630 0.00 0.00 0.00 4.35
2737 4419 6.780706 TGAAAAGGAGAACACGAATTCTAC 57.219 37.500 3.52 7.35 39.08 2.59
2738 4420 5.699458 TGAAAAGGAGAACACGAATTCTACC 59.301 40.000 10.74 10.72 40.02 3.18
2744 4426 6.014840 AGGAGAACACGAATTCTACCTTTACA 60.015 38.462 10.74 0.00 40.02 2.41
2805 4490 2.961531 TTAAGTAAACTGGCTGGCCA 57.038 45.000 13.96 13.96 45.02 5.36
2812 4497 4.777366 AGTAAACTGGCTGGCCAATTAATT 59.223 37.500 15.47 8.48 46.63 1.40
2841 4528 5.833131 TCATAAGCACATATTTTCCCCTTCC 59.167 40.000 0.00 0.00 0.00 3.46
2903 4590 8.114331 TGTATTTGGATTCATTCTCATATGGC 57.886 34.615 2.13 0.00 0.00 4.40
2917 4604 4.067192 TCATATGGCCTGATTGATCAACG 58.933 43.478 11.07 2.33 36.18 4.10
2922 4609 1.398390 GCCTGATTGATCAACGGTGAC 59.602 52.381 4.62 0.00 36.31 3.67
2924 4611 2.416547 CCTGATTGATCAACGGTGACAC 59.583 50.000 4.62 3.59 36.31 3.67
2928 4615 2.333688 TGATCAACGGTGACACCAAA 57.666 45.000 24.18 6.57 38.47 3.28
2929 4616 2.857483 TGATCAACGGTGACACCAAAT 58.143 42.857 24.18 10.96 38.47 2.32
2930 4617 2.551887 TGATCAACGGTGACACCAAATG 59.448 45.455 24.18 17.78 38.47 2.32
2989 4676 6.035975 GGGAAATATTTCTTGTCCAATTTGCG 59.964 38.462 23.85 0.00 37.35 4.85
3035 4722 7.509318 TCATATACAGTTCCTAGTTGGCACTAT 59.491 37.037 0.00 0.00 40.31 2.12
3110 4808 5.896073 TTTAAACCCCAAATCCATTGTGT 57.104 34.783 0.00 0.00 37.32 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.371512 TGCGCACAAGCAAAATCGG 60.372 52.632 5.66 0.00 45.06 4.18
42 43 0.878523 GTTGTCTACCACTGCGCACA 60.879 55.000 5.66 0.00 0.00 4.57
70 71 8.699749 CCTTTTTCATTTTTCGAAGGATAACAC 58.300 33.333 0.00 0.00 36.59 3.32
77 1453 6.761242 AGTTTCCCTTTTTCATTTTTCGAAGG 59.239 34.615 0.00 0.00 34.76 3.46
139 1516 3.451141 ACAATCGAGAGGCAAGAGATC 57.549 47.619 0.00 0.00 0.00 2.75
140 1517 4.442192 GGTTACAATCGAGAGGCAAGAGAT 60.442 45.833 0.00 0.00 0.00 2.75
141 1518 3.119101 GGTTACAATCGAGAGGCAAGAGA 60.119 47.826 0.00 0.00 0.00 3.10
142 1519 3.118956 AGGTTACAATCGAGAGGCAAGAG 60.119 47.826 0.00 0.00 0.00 2.85
143 1520 2.832129 AGGTTACAATCGAGAGGCAAGA 59.168 45.455 0.00 0.00 0.00 3.02
144 1521 3.252974 AGGTTACAATCGAGAGGCAAG 57.747 47.619 0.00 0.00 0.00 4.01
145 1522 5.353394 AATAGGTTACAATCGAGAGGCAA 57.647 39.130 0.00 0.00 0.00 4.52
146 1523 6.266786 TCATAATAGGTTACAATCGAGAGGCA 59.733 38.462 0.00 0.00 0.00 4.75
147 1524 6.688578 TCATAATAGGTTACAATCGAGAGGC 58.311 40.000 0.00 0.00 0.00 4.70
148 1525 7.761704 CCATCATAATAGGTTACAATCGAGAGG 59.238 40.741 0.00 0.00 0.00 3.69
149 1526 8.523658 TCCATCATAATAGGTTACAATCGAGAG 58.476 37.037 0.00 0.00 0.00 3.20
150 1527 8.417273 TCCATCATAATAGGTTACAATCGAGA 57.583 34.615 0.00 0.00 0.00 4.04
151 1528 9.658799 ATTCCATCATAATAGGTTACAATCGAG 57.341 33.333 0.00 0.00 0.00 4.04
170 1547 9.387123 GCGATATGAAAAGAGTTTTATTCCATC 57.613 33.333 0.00 0.00 31.94 3.51
171 1548 8.902806 TGCGATATGAAAAGAGTTTTATTCCAT 58.097 29.630 0.00 0.00 31.94 3.41
172 1549 8.275015 TGCGATATGAAAAGAGTTTTATTCCA 57.725 30.769 0.00 0.00 31.94 3.53
173 1550 9.567848 TTTGCGATATGAAAAGAGTTTTATTCC 57.432 29.630 0.00 0.00 31.94 3.01
201 1578 6.930667 ACTGTTGGTTCATACTACGTTTTT 57.069 33.333 0.00 0.00 0.00 1.94
211 1588 4.464951 ACCATCGTCTACTGTTGGTTCATA 59.535 41.667 0.00 0.00 37.40 2.15
225 1602 6.403636 GCAGAATTGACATTTTACCATCGTCT 60.404 38.462 0.00 0.00 0.00 4.18
241 1717 8.072321 AGAGTCTCTGTAATTAGCAGAATTGA 57.928 34.615 0.18 8.86 41.74 2.57
249 1725 6.458232 TCCTCAAGAGTCTCTGTAATTAGC 57.542 41.667 2.28 0.00 0.00 3.09
260 1736 3.259625 GCTGTTACCTTCCTCAAGAGTCT 59.740 47.826 0.00 0.00 0.00 3.24
264 1749 3.239449 TCAGCTGTTACCTTCCTCAAGA 58.761 45.455 14.67 0.00 0.00 3.02
271 1756 3.330267 CACTCCTTCAGCTGTTACCTTC 58.670 50.000 14.67 0.00 0.00 3.46
272 1757 2.551071 GCACTCCTTCAGCTGTTACCTT 60.551 50.000 14.67 0.00 0.00 3.50
277 1762 2.283145 ATTGCACTCCTTCAGCTGTT 57.717 45.000 14.67 0.00 0.00 3.16
278 1763 2.616510 GGTATTGCACTCCTTCAGCTGT 60.617 50.000 14.67 0.00 0.00 4.40
279 1764 2.012673 GGTATTGCACTCCTTCAGCTG 58.987 52.381 7.63 7.63 0.00 4.24
282 1767 1.009829 GCGGTATTGCACTCCTTCAG 58.990 55.000 0.00 0.00 34.15 3.02
289 1774 1.021390 GTCTGCTGCGGTATTGCACT 61.021 55.000 8.55 0.00 40.62 4.40
291 1776 0.534873 TAGTCTGCTGCGGTATTGCA 59.465 50.000 8.55 0.00 43.95 4.08
439 1928 1.576421 GTAGTGCTGTTGTGCCTGC 59.424 57.895 0.00 0.00 0.00 4.85
442 1931 2.250939 TGCGTAGTGCTGTTGTGCC 61.251 57.895 0.00 0.00 46.63 5.01
457 1946 3.041437 TGATACTTGATCACGTCGTGCG 61.041 50.000 20.56 8.36 39.78 5.34
458 1947 2.526077 TGATACTTGATCACGTCGTGC 58.474 47.619 20.56 8.21 39.78 5.34
471 1962 5.683876 AGATGCAGTTACTGGTGATACTT 57.316 39.130 14.63 0.00 31.21 2.24
497 1990 2.661866 GCGCCGCCATAGAATCGT 60.662 61.111 0.00 0.00 0.00 3.73
498 1991 2.661537 TGCGCCGCCATAGAATCG 60.662 61.111 6.63 0.00 0.00 3.34
772 2314 3.821881 GATGAGAAGCAGCGCAATC 57.178 52.632 11.47 1.44 0.00 2.67
778 2320 1.719600 AAGACACGATGAGAAGCAGC 58.280 50.000 0.00 0.00 0.00 5.25
787 2341 4.686091 TGAGAAGCTTTGTAAGACACGATG 59.314 41.667 0.00 0.00 0.00 3.84
788 2342 4.883083 TGAGAAGCTTTGTAAGACACGAT 58.117 39.130 0.00 0.00 0.00 3.73
790 2344 4.051922 ACTGAGAAGCTTTGTAAGACACG 58.948 43.478 0.00 0.00 0.00 4.49
792 2346 3.809832 GCACTGAGAAGCTTTGTAAGACA 59.190 43.478 0.00 0.00 0.00 3.41
793 2347 4.061596 AGCACTGAGAAGCTTTGTAAGAC 58.938 43.478 0.00 0.00 38.01 3.01
794 2348 4.060900 CAGCACTGAGAAGCTTTGTAAGA 58.939 43.478 0.00 0.00 39.50 2.10
823 2384 0.099082 GGGTCGTCACTCGTCATCTC 59.901 60.000 0.00 0.00 40.80 2.75
1369 2979 1.066918 GGTCGGACACGTTCACTGT 59.933 57.895 10.76 0.00 41.85 3.55
1425 3035 4.308458 TGGTCCTTGACGCCCGTG 62.308 66.667 0.00 0.00 32.65 4.94
1563 3173 3.515316 CTGGCACCCGTCGTTGTCT 62.515 63.158 0.00 0.00 0.00 3.41
1671 3281 3.335534 GTCGCGACGTTGCAGGTT 61.336 61.111 25.19 0.00 34.15 3.50
1812 3431 0.400213 AGAACATGAACGCCTTCCCA 59.600 50.000 0.00 0.00 0.00 4.37
2223 3854 1.199789 CACGCCTAATTCTTTGCTGCA 59.800 47.619 0.00 0.00 0.00 4.41
2226 3860 2.504367 ACACACGCCTAATTCTTTGCT 58.496 42.857 0.00 0.00 0.00 3.91
2227 3861 2.989422 ACACACGCCTAATTCTTTGC 57.011 45.000 0.00 0.00 0.00 3.68
2228 3862 4.391358 CGTTACACACGCCTAATTCTTTG 58.609 43.478 0.00 0.00 43.37 2.77
2229 3863 4.657075 CGTTACACACGCCTAATTCTTT 57.343 40.909 0.00 0.00 43.37 2.52
2306 3947 6.404708 TGTTACCGGCAGTACATTACATAAA 58.595 36.000 0.00 0.00 0.00 1.40
2308 3949 5.127519 ACTGTTACCGGCAGTACATTACATA 59.872 40.000 11.04 0.00 44.41 2.29
2360 4007 2.636893 ACTTGCTCCATCTCTGAACAGT 59.363 45.455 1.73 0.00 0.00 3.55
2377 4024 8.027440 TCAGTTCAAAAATTTCAAACCACTTG 57.973 30.769 0.00 0.00 36.25 3.16
2395 4042 2.545532 CCCGCAAAAGCAAATCAGTTCA 60.546 45.455 0.00 0.00 0.00 3.18
2399 4046 3.296322 TTACCCGCAAAAGCAAATCAG 57.704 42.857 0.00 0.00 0.00 2.90
2420 4067 2.108250 AGCCCAAACCAAGTATGTGACT 59.892 45.455 0.00 0.00 41.56 3.41
2428 4075 2.745968 TCTTTTCAGCCCAAACCAAGT 58.254 42.857 0.00 0.00 0.00 3.16
2472 4145 2.884179 ATTTCCGGGCGGAGGGAGTA 62.884 60.000 0.00 0.00 46.06 2.59
2473 4146 2.884179 TATTTCCGGGCGGAGGGAGT 62.884 60.000 0.00 0.00 46.06 3.85
2474 4147 2.138179 TATTTCCGGGCGGAGGGAG 61.138 63.158 0.00 0.00 46.06 4.30
2475 4148 2.041715 TATTTCCGGGCGGAGGGA 60.042 61.111 0.00 0.00 46.06 4.20
2476 4149 1.979619 AAGTATTTCCGGGCGGAGGG 61.980 60.000 0.00 0.00 46.06 4.30
2477 4150 0.814010 CAAGTATTTCCGGGCGGAGG 60.814 60.000 0.00 0.00 46.06 4.30
2478 4151 0.107848 ACAAGTATTTCCGGGCGGAG 60.108 55.000 0.00 0.00 46.06 4.63
2479 4152 0.108041 GACAAGTATTTCCGGGCGGA 60.108 55.000 0.00 0.00 43.52 5.54
2480 4153 0.391927 TGACAAGTATTTCCGGGCGG 60.392 55.000 0.00 0.00 0.00 6.13
2481 4154 1.597663 GATGACAAGTATTTCCGGGCG 59.402 52.381 0.00 0.00 0.00 6.13
2482 4155 2.639065 TGATGACAAGTATTTCCGGGC 58.361 47.619 0.00 0.00 0.00 6.13
2483 4156 5.637006 TTTTGATGACAAGTATTTCCGGG 57.363 39.130 0.00 0.00 37.32 5.73
2484 4157 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
2485 4158 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
2492 4165 9.918630 CCTCTTTTATTCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
2555 4228 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
2556 4229 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
2557 4230 9.474920 GAAATACTTGTCATCAAAATGGACAAA 57.525 29.630 7.70 0.00 34.98 2.83
2558 4231 8.087750 GGAAATACTTGTCATCAAAATGGACAA 58.912 33.333 0.00 0.00 34.59 3.18
2559 4232 7.574779 CGGAAATACTTGTCATCAAAATGGACA 60.575 37.037 0.00 0.00 33.42 4.02
2560 4233 6.747280 CGGAAATACTTGTCATCAAAATGGAC 59.253 38.462 0.00 0.00 33.42 4.02
2561 4234 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
2562 4235 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
2563 4236 6.035843 CCCGGAAATACTTGTCATCAAAATG 58.964 40.000 0.73 0.00 32.87 2.32
2564 4237 5.394115 GCCCGGAAATACTTGTCATCAAAAT 60.394 40.000 0.73 0.00 32.87 1.82
2565 4238 4.082463 GCCCGGAAATACTTGTCATCAAAA 60.082 41.667 0.73 0.00 32.87 2.44
2566 4239 3.442273 GCCCGGAAATACTTGTCATCAAA 59.558 43.478 0.73 0.00 32.87 2.69
2567 4240 3.013921 GCCCGGAAATACTTGTCATCAA 58.986 45.455 0.73 0.00 0.00 2.57
2568 4241 2.639065 GCCCGGAAATACTTGTCATCA 58.361 47.619 0.73 0.00 0.00 3.07
2569 4242 1.597663 CGCCCGGAAATACTTGTCATC 59.402 52.381 0.73 0.00 0.00 2.92
2570 4243 1.663695 CGCCCGGAAATACTTGTCAT 58.336 50.000 0.73 0.00 0.00 3.06
2571 4244 0.391927 CCGCCCGGAAATACTTGTCA 60.392 55.000 0.73 0.00 37.50 3.58
2572 4245 0.108041 TCCGCCCGGAAATACTTGTC 60.108 55.000 0.73 0.00 42.05 3.18
2573 4246 0.107848 CTCCGCCCGGAAATACTTGT 60.108 55.000 0.73 0.00 44.66 3.16
2574 4247 0.814010 CCTCCGCCCGGAAATACTTG 60.814 60.000 0.73 0.00 44.66 3.16
2575 4248 1.525442 CCTCCGCCCGGAAATACTT 59.475 57.895 0.73 0.00 44.66 2.24
2576 4249 2.440817 CCCTCCGCCCGGAAATACT 61.441 63.158 0.73 0.00 44.66 2.12
2577 4250 2.110420 CCCTCCGCCCGGAAATAC 59.890 66.667 0.73 0.00 44.66 1.89
2578 4251 2.041715 TCCCTCCGCCCGGAAATA 60.042 61.111 0.73 0.00 44.66 1.40
2579 4252 2.884179 TACTCCCTCCGCCCGGAAAT 62.884 60.000 0.73 0.00 44.66 2.17
2580 4253 3.605412 TACTCCCTCCGCCCGGAAA 62.605 63.158 0.73 0.00 44.66 3.13
2581 4254 4.064768 TACTCCCTCCGCCCGGAA 62.065 66.667 0.73 0.00 44.66 4.30
2582 4255 4.828296 GTACTCCCTCCGCCCGGA 62.828 72.222 0.73 9.31 42.90 5.14
2583 4256 4.835891 AGTACTCCCTCCGCCCGG 62.836 72.222 0.00 0.00 0.00 5.73
2584 4257 2.758737 AAGTACTCCCTCCGCCCG 60.759 66.667 0.00 0.00 0.00 6.13
2585 4258 2.732619 CCAAGTACTCCCTCCGCCC 61.733 68.421 0.00 0.00 0.00 6.13
2586 4259 2.732619 CCCAAGTACTCCCTCCGCC 61.733 68.421 0.00 0.00 0.00 6.13
2587 4260 1.677637 CTCCCAAGTACTCCCTCCGC 61.678 65.000 0.00 0.00 0.00 5.54
2588 4261 0.324460 ACTCCCAAGTACTCCCTCCG 60.324 60.000 0.00 0.00 32.59 4.63
2589 4262 1.832366 GAACTCCCAAGTACTCCCTCC 59.168 57.143 0.00 0.00 33.48 4.30
2590 4263 2.822697 AGAACTCCCAAGTACTCCCTC 58.177 52.381 0.00 0.00 33.48 4.30
2591 4264 3.277416 AAGAACTCCCAAGTACTCCCT 57.723 47.619 0.00 0.00 33.48 4.20
2592 4265 3.326880 TGAAAGAACTCCCAAGTACTCCC 59.673 47.826 0.00 0.00 33.48 4.30
2593 4266 4.618920 TGAAAGAACTCCCAAGTACTCC 57.381 45.455 0.00 0.00 33.48 3.85
2594 4267 4.755629 GGTTGAAAGAACTCCCAAGTACTC 59.244 45.833 0.00 0.00 33.48 2.59
2595 4268 4.412528 AGGTTGAAAGAACTCCCAAGTACT 59.587 41.667 0.00 0.00 33.48 2.73
2596 4269 4.715713 AGGTTGAAAGAACTCCCAAGTAC 58.284 43.478 0.00 0.00 33.48 2.73
2637 4310 4.430423 CGTGTGCCGCGCTTCTTC 62.430 66.667 5.56 0.00 0.00 2.87
2644 4317 4.354212 CAGACAACGTGTGCCGCG 62.354 66.667 0.00 0.00 43.38 6.46
2649 4322 5.150342 TGACAAAATACAGACAACGTGTG 57.850 39.130 0.00 0.00 32.88 3.82
2650 4323 5.804692 TTGACAAAATACAGACAACGTGT 57.195 34.783 0.00 0.00 0.00 4.49
2652 4325 9.393249 CATATTTTGACAAAATACAGACAACGT 57.607 29.630 27.54 11.77 43.78 3.99
2654 4327 9.190858 TGCATATTTTGACAAAATACAGACAAC 57.809 29.630 27.54 15.64 43.78 3.32
2656 4329 9.409312 CTTGCATATTTTGACAAAATACAGACA 57.591 29.630 27.54 20.82 43.78 3.41
2666 4348 9.107177 ACATTGTTTTCTTGCATATTTTGACAA 57.893 25.926 0.00 0.00 0.00 3.18
2677 4359 6.146216 CCGTAATACACATTGTTTTCTTGCA 58.854 36.000 0.00 0.00 0.00 4.08
2717 4399 5.485209 AGGTAGAATTCGTGTTCTCCTTT 57.515 39.130 8.03 0.00 39.15 3.11
2728 4410 5.642063 ACACATGGTGTAAAGGTAGAATTCG 59.358 40.000 0.00 0.00 45.56 3.34
2730 4412 7.110155 CCTACACATGGTGTAAAGGTAGAATT 58.890 38.462 10.12 0.00 46.35 2.17
2737 4419 3.066291 TGCCTACACATGGTGTAAAGG 57.934 47.619 12.03 12.03 46.35 3.11
2738 4420 4.621068 CATGCCTACACATGGTGTAAAG 57.379 45.455 10.12 6.34 46.35 1.85
2858 4545 1.605971 TATTGCTACCGTGCCCGTCA 61.606 55.000 0.00 0.00 0.00 4.35
2861 4548 0.531974 ACATATTGCTACCGTGCCCG 60.532 55.000 0.00 0.00 0.00 6.13
2864 4551 4.513692 TCCAAATACATATTGCTACCGTGC 59.486 41.667 0.00 0.00 0.00 5.34
2866 4553 6.995686 TGAATCCAAATACATATTGCTACCGT 59.004 34.615 0.00 0.00 0.00 4.83
2903 4590 2.416547 GTGTCACCGTTGATCAATCAGG 59.583 50.000 12.12 16.81 38.19 3.86
2917 4604 4.853924 AACAATCTCATTTGGTGTCACC 57.146 40.909 15.64 15.64 39.22 4.02
2970 4657 4.511617 TGCGCAAATTGGACAAGAAATA 57.488 36.364 8.16 0.00 0.00 1.40
2983 4670 3.665745 AGGTGAAAAAGATGCGCAAAT 57.334 38.095 17.11 2.11 0.00 2.32
3027 4714 6.053632 TGAGAGAGAATGAAAATAGTGCCA 57.946 37.500 0.00 0.00 0.00 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.