Multiple sequence alignment - TraesCS3B01G447100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G447100 chr3B 100.000 8074 0 0 1 8074 686341197 686349270 0.000000e+00 14910.0
1 TraesCS3B01G447100 chr3A 91.788 3227 169 33 4350 7517 656109250 656112439 0.000000e+00 4403.0
2 TraesCS3B01G447100 chr3A 86.682 2643 144 88 5 2531 656104621 656107171 0.000000e+00 2739.0
3 TraesCS3B01G447100 chr3A 93.951 1025 36 9 2522 3534 656107201 656108211 0.000000e+00 1526.0
4 TraesCS3B01G447100 chr3A 93.472 720 42 2 3567 4282 656108201 656108919 0.000000e+00 1064.0
5 TraesCS3B01G447100 chr3A 86.636 217 10 1 7512 7728 656113098 656113295 1.050000e-53 222.0
6 TraesCS3B01G447100 chr3A 91.803 61 5 0 7727 7787 656114558 656114618 1.440000e-12 86.1
7 TraesCS3B01G447100 chr3D 87.851 2634 143 72 5 2532 520718243 520720805 0.000000e+00 2928.0
8 TraesCS3B01G447100 chr3D 93.557 1878 94 16 4350 6207 520722834 520724704 0.000000e+00 2772.0
9 TraesCS3B01G447100 chr3D 92.372 1324 76 8 6206 7526 520724730 520726031 0.000000e+00 1862.0
10 TraesCS3B01G447100 chr3D 94.341 1025 30 11 2522 3534 520720833 520721841 0.000000e+00 1546.0
11 TraesCS3B01G447100 chr3D 91.719 797 37 5 3567 4355 520721831 520722606 0.000000e+00 1079.0
12 TraesCS3B01G447100 chr3D 92.347 392 21 3 7510 7900 520726050 520726433 4.260000e-152 549.0
13 TraesCS3B01G447100 chr5B 88.284 606 54 4 1168 1770 68814394 68814985 0.000000e+00 710.0
14 TraesCS3B01G447100 chr2B 91.281 367 24 5 1410 1770 461896036 461895672 2.020000e-135 494.0
15 TraesCS3B01G447100 chr2B 91.489 47 3 1 7900 7945 764660366 764660412 6.760000e-06 63.9
16 TraesCS3B01G447100 chr7D 93.069 202 5 2 1167 1368 549768596 549768788 3.690000e-73 287.0
17 TraesCS3B01G447100 chr7D 100.000 28 0 0 7920 7947 401709154 401709127 1.500000e-02 52.8
18 TraesCS3B01G447100 chr4D 92.683 164 10 1 1167 1330 463693104 463693265 1.350000e-57 235.0
19 TraesCS3B01G447100 chr6D 91.558 154 4 4 1215 1368 469343766 469343622 3.820000e-48 204.0
20 TraesCS3B01G447100 chr7A 86.364 176 23 1 1 176 657422614 657422440 2.970000e-44 191.0
21 TraesCS3B01G447100 chr7A 95.455 88 4 0 1683 1770 49629856 49629943 3.040000e-29 141.0
22 TraesCS3B01G447100 chr7A 93.750 48 2 1 7900 7946 131855313 131855266 4.040000e-08 71.3
23 TraesCS3B01G447100 chr7A 83.929 56 8 1 7893 7947 459452569 459452514 1.500000e-02 52.8
24 TraesCS3B01G447100 chr5A 89.011 91 9 1 7984 8074 35635515 35635604 2.380000e-20 111.0
25 TraesCS3B01G447100 chrUn 96.825 63 2 0 1686 1748 433056979 433056917 1.110000e-18 106.0
26 TraesCS3B01G447100 chr1D 91.667 48 3 1 7898 7944 295399164 295399211 1.880000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G447100 chr3B 686341197 686349270 8073 False 14910.000000 14910 100.000000 1 8074 1 chr3B.!!$F1 8073
1 TraesCS3B01G447100 chr3A 656104621 656114618 9997 False 1673.350000 4403 90.722000 5 7787 6 chr3A.!!$F1 7782
2 TraesCS3B01G447100 chr3D 520718243 520726433 8190 False 1789.333333 2928 92.031167 5 7900 6 chr3D.!!$F1 7895
3 TraesCS3B01G447100 chr5B 68814394 68814985 591 False 710.000000 710 88.284000 1168 1770 1 chr5B.!!$F1 602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
929 1043 0.035458 ACGGCAAAACCTCTCCTCTG 59.965 55.0 0.00 0.0 35.61 3.35 F
975 1104 0.103208 CTAGCATCGAGGCGGAAACT 59.897 55.0 17.28 0.0 39.27 2.66 F
2331 2512 0.179124 GCGTGCCAAACTTGTCCAAA 60.179 50.0 0.00 0.0 0.00 3.28 F
4176 4417 0.033208 TTCCATTCCCTGACCATGCC 60.033 55.0 0.00 0.0 0.00 4.40 F
5942 6529 0.036858 GCAGTGAACTGGAGGAGACC 60.037 60.0 12.20 0.0 43.94 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2905 3135 0.109153 AGATTGCACACCTGCTGACA 59.891 50.000 0.00 0.0 44.57 3.58 R
2998 3228 1.070758 TGACTGGGTCAGAGAAACTGC 59.929 52.381 1.59 0.0 45.38 4.40 R
4254 4495 0.249955 AAAGCGGCCCATTTTCCATG 59.750 50.000 0.00 0.0 0.00 3.66 R
6075 6662 0.038310 GCTTTGGAGCTGTACCCCTT 59.962 55.000 0.00 0.0 45.65 3.95 R
7961 10520 0.033504 ACTGATATAGGCCCGCGTTG 59.966 55.000 4.92 0.0 0.00 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.607489 AGTGCAAGCTGCCCTGTAAG 60.607 55.000 0.00 0.00 44.23 2.34
132 133 3.897122 AAGGTGGAGCGGGCCAAA 61.897 61.111 4.39 0.00 40.20 3.28
147 148 1.668419 CCAAATACTCGGCCTTCCTG 58.332 55.000 0.00 0.00 0.00 3.86
183 187 0.382515 CGACGACTTCCTCCTGATCC 59.617 60.000 0.00 0.00 0.00 3.36
184 188 1.475403 GACGACTTCCTCCTGATCCA 58.525 55.000 0.00 0.00 0.00 3.41
185 189 2.035632 GACGACTTCCTCCTGATCCAT 58.964 52.381 0.00 0.00 0.00 3.41
186 190 2.035321 GACGACTTCCTCCTGATCCATC 59.965 54.545 0.00 0.00 0.00 3.51
187 191 1.342819 CGACTTCCTCCTGATCCATCC 59.657 57.143 0.00 0.00 0.00 3.51
199 203 3.261962 TGATCCATCCATCCATCCATCA 58.738 45.455 0.00 0.00 0.00 3.07
241 245 3.446570 AGGCTGCAAAGCATCGCC 61.447 61.111 12.70 12.70 46.06 5.54
343 348 2.691996 TGGCATCCTAGGCAGGCA 60.692 61.111 20.56 20.56 42.30 4.75
344 349 2.112718 GGCATCCTAGGCAGGCAG 59.887 66.667 17.98 1.08 42.30 4.85
345 350 2.446848 GGCATCCTAGGCAGGCAGA 61.447 63.158 17.98 0.00 42.30 4.26
346 351 1.227793 GCATCCTAGGCAGGCAGAC 60.228 63.158 2.96 0.00 42.30 3.51
347 352 1.068753 CATCCTAGGCAGGCAGACG 59.931 63.158 2.96 0.00 42.30 4.18
348 353 1.075970 ATCCTAGGCAGGCAGACGA 60.076 57.895 2.96 0.00 42.30 4.20
350 355 2.055042 CCTAGGCAGGCAGACGAGT 61.055 63.158 0.00 0.00 34.35 4.18
351 356 0.752009 CCTAGGCAGGCAGACGAGTA 60.752 60.000 0.00 0.00 34.35 2.59
356 361 2.042843 AGGCAGACGAGTAGGGGG 60.043 66.667 0.00 0.00 0.00 5.40
440 486 9.072294 ACATTTTTGTTCGTAAAAGAAGACTTG 57.928 29.630 0.00 0.00 36.39 3.16
441 487 7.500807 TTTTTGTTCGTAAAAGAAGACTTGC 57.499 32.000 0.00 0.00 36.39 4.01
442 488 6.431198 TTTGTTCGTAAAAGAAGACTTGCT 57.569 33.333 0.00 0.00 36.39 3.91
443 489 6.431198 TTGTTCGTAAAAGAAGACTTGCTT 57.569 33.333 0.00 0.00 40.25 3.91
454 500 0.036022 GACTTGCTTGCCCTCTCACT 59.964 55.000 0.00 0.00 0.00 3.41
484 530 3.546724 TCCGTGTCAATTTCCAAGTTCA 58.453 40.909 0.00 0.00 0.00 3.18
487 533 3.066064 CGTGTCAATTTCCAAGTTCACCA 59.934 43.478 0.00 0.00 0.00 4.17
490 547 5.691754 GTGTCAATTTCCAAGTTCACCATTC 59.308 40.000 0.00 0.00 0.00 2.67
515 575 4.782019 TCCCTTTTGGTTGAATCAATCG 57.218 40.909 0.00 0.00 38.10 3.34
580 646 1.356938 GCGTCTTCGTTAGGGGAAAG 58.643 55.000 0.00 0.00 39.49 2.62
604 672 2.275380 GGAAAATGGCACTGGGCGT 61.275 57.895 0.00 0.00 46.16 5.68
640 716 2.743126 TGAAAGGGCCGTTACGTATTTG 59.257 45.455 11.83 0.00 0.00 2.32
641 717 1.089112 AAGGGCCGTTACGTATTTGC 58.911 50.000 9.42 0.00 0.00 3.68
643 719 1.083242 GGGCCGTTACGTATTTGCGA 61.083 55.000 3.52 0.00 35.59 5.10
644 720 0.720590 GGCCGTTACGTATTTGCGAA 59.279 50.000 3.52 0.00 35.59 4.70
645 721 1.267186 GGCCGTTACGTATTTGCGAAG 60.267 52.381 3.52 0.00 35.59 3.79
646 722 1.267186 GCCGTTACGTATTTGCGAAGG 60.267 52.381 3.52 0.00 35.59 3.46
647 723 1.267186 CCGTTACGTATTTGCGAAGGC 60.267 52.381 3.52 0.00 40.52 4.35
648 724 1.657094 CGTTACGTATTTGCGAAGGCT 59.343 47.619 0.00 0.00 40.82 4.58
649 725 2.284855 CGTTACGTATTTGCGAAGGCTC 60.285 50.000 0.00 0.00 40.82 4.70
650 726 1.930567 TACGTATTTGCGAAGGCTCC 58.069 50.000 0.00 0.00 40.82 4.70
651 727 1.082117 ACGTATTTGCGAAGGCTCCG 61.082 55.000 0.00 0.00 40.82 4.63
654 751 0.810031 TATTTGCGAAGGCTCCGAGC 60.810 55.000 12.27 12.27 41.46 5.03
671 768 3.302344 CCCCCAACCAACCGCAAG 61.302 66.667 0.00 0.00 0.00 4.01
759 861 1.527611 AGTGACAGACGGACGGACA 60.528 57.895 0.00 0.00 0.00 4.02
776 878 4.636435 AGGCAAACGACCCACCCG 62.636 66.667 0.00 0.00 0.00 5.28
793 895 1.649390 CCGAGACTCGAGTCCACAGG 61.649 65.000 35.83 28.47 45.85 4.00
795 897 1.939769 GAGACTCGAGTCCACAGGCC 61.940 65.000 35.83 14.40 45.85 5.19
796 898 2.203640 ACTCGAGTCCACAGGCCA 60.204 61.111 13.58 0.00 0.00 5.36
797 899 2.262915 CTCGAGTCCACAGGCCAC 59.737 66.667 5.01 0.00 0.00 5.01
798 900 3.633094 CTCGAGTCCACAGGCCACG 62.633 68.421 5.01 0.00 0.00 4.94
799 901 3.680786 CGAGTCCACAGGCCACGA 61.681 66.667 5.01 0.00 0.00 4.35
800 902 2.048127 GAGTCCACAGGCCACGAC 60.048 66.667 5.01 4.34 0.00 4.34
801 903 3.916392 GAGTCCACAGGCCACGACG 62.916 68.421 5.01 0.00 0.00 5.12
850 955 0.720027 GCTTTACTTTCGACGCTCCC 59.280 55.000 0.00 0.00 0.00 4.30
851 956 1.672145 GCTTTACTTTCGACGCTCCCT 60.672 52.381 0.00 0.00 0.00 4.20
863 968 3.368501 CTCCCTCCTCCCCTCCCA 61.369 72.222 0.00 0.00 0.00 4.37
883 988 3.764466 CGCCTTCCTCCTCTGCGT 61.764 66.667 0.00 0.00 40.33 5.24
886 991 1.153745 CCTTCCTCCTCTGCGTTCG 60.154 63.158 0.00 0.00 0.00 3.95
887 992 1.587054 CTTCCTCCTCTGCGTTCGT 59.413 57.895 0.00 0.00 0.00 3.85
926 1040 1.681264 CAAAACGGCAAAACCTCTCCT 59.319 47.619 0.00 0.00 35.61 3.69
929 1043 0.035458 ACGGCAAAACCTCTCCTCTG 59.965 55.000 0.00 0.00 35.61 3.35
931 1045 0.962855 GGCAAAACCTCTCCTCTGCC 60.963 60.000 0.00 0.00 42.28 4.85
932 1046 0.250901 GCAAAACCTCTCCTCTGCCA 60.251 55.000 0.00 0.00 0.00 4.92
933 1047 1.819305 GCAAAACCTCTCCTCTGCCAA 60.819 52.381 0.00 0.00 0.00 4.52
934 1048 2.157738 CAAAACCTCTCCTCTGCCAAG 58.842 52.381 0.00 0.00 0.00 3.61
936 1050 1.846712 AACCTCTCCTCTGCCAAGCC 61.847 60.000 0.00 0.00 0.00 4.35
937 1051 1.994507 CCTCTCCTCTGCCAAGCCT 60.995 63.158 0.00 0.00 0.00 4.58
938 1052 1.521616 CTCTCCTCTGCCAAGCCTC 59.478 63.158 0.00 0.00 0.00 4.70
939 1053 1.970352 CTCTCCTCTGCCAAGCCTCC 61.970 65.000 0.00 0.00 0.00 4.30
940 1054 2.203983 TCCTCTGCCAAGCCTCCA 60.204 61.111 0.00 0.00 0.00 3.86
941 1055 1.845627 CTCCTCTGCCAAGCCTCCAA 61.846 60.000 0.00 0.00 0.00 3.53
944 1073 0.815734 CTCTGCCAAGCCTCCAAATG 59.184 55.000 0.00 0.00 0.00 2.32
946 1075 2.182537 GCCAAGCCTCCAAATGCG 59.817 61.111 0.00 0.00 0.00 4.73
975 1104 0.103208 CTAGCATCGAGGCGGAAACT 59.897 55.000 17.28 0.00 39.27 2.66
1404 1563 4.796231 CAGTTCGAGTCCCGGGCG 62.796 72.222 18.49 14.88 39.14 6.13
1959 2131 1.146637 CTCTGTTGCTCTGACTGCAC 58.853 55.000 0.00 0.00 40.40 4.57
1960 2132 0.465287 TCTGTTGCTCTGACTGCACA 59.535 50.000 0.00 0.00 40.40 4.57
2006 2178 4.812476 CATTCGCGACGCTGGGGA 62.812 66.667 19.02 4.54 0.00 4.81
2021 2193 0.466739 GGGGAACAAAACGACCCTGT 60.467 55.000 0.00 0.00 41.79 4.00
2081 2253 1.198713 CAGGTGGTGCTATCTCCTGT 58.801 55.000 11.64 0.00 40.25 4.00
2090 2262 4.518970 GGTGCTATCTCCTGTTTTTGAACA 59.481 41.667 0.00 0.00 0.00 3.18
2091 2263 5.009610 GGTGCTATCTCCTGTTTTTGAACAA 59.990 40.000 0.00 0.00 31.48 2.83
2124 2305 1.084935 CGTGTGTGGTTGTTGACGGA 61.085 55.000 0.00 0.00 0.00 4.69
2125 2306 0.375803 GTGTGTGGTTGTTGACGGAC 59.624 55.000 0.00 0.00 0.00 4.79
2269 2450 0.976641 ATCCTCCTTTCGTGCACTGA 59.023 50.000 16.19 11.14 0.00 3.41
2289 2470 2.973694 ATTTCTGGTTGATGCATGCC 57.026 45.000 16.68 4.11 0.00 4.40
2313 2494 1.202336 GCAATTAGGCATGTCCAGTGC 60.202 52.381 4.04 4.04 41.78 4.40
2323 2504 2.186826 GTCCAGTGCGTGCCAAACT 61.187 57.895 0.00 0.00 0.00 2.66
2325 2506 1.299316 CCAGTGCGTGCCAAACTTG 60.299 57.895 0.00 0.00 0.00 3.16
2326 2507 1.433064 CAGTGCGTGCCAAACTTGT 59.567 52.632 0.00 0.00 0.00 3.16
2327 2508 0.592247 CAGTGCGTGCCAAACTTGTC 60.592 55.000 0.00 0.00 0.00 3.18
2328 2509 1.299089 GTGCGTGCCAAACTTGTCC 60.299 57.895 0.00 0.00 0.00 4.02
2329 2510 1.750780 TGCGTGCCAAACTTGTCCA 60.751 52.632 0.00 0.00 0.00 4.02
2330 2511 1.315981 TGCGTGCCAAACTTGTCCAA 61.316 50.000 0.00 0.00 0.00 3.53
2331 2512 0.179124 GCGTGCCAAACTTGTCCAAA 60.179 50.000 0.00 0.00 0.00 3.28
2333 2514 1.923864 CGTGCCAAACTTGTCCAAAAC 59.076 47.619 0.00 0.00 0.00 2.43
2334 2515 1.923864 GTGCCAAACTTGTCCAAAACG 59.076 47.619 0.00 0.00 0.00 3.60
2335 2516 1.546476 TGCCAAACTTGTCCAAAACGT 59.454 42.857 0.00 0.00 0.00 3.99
2336 2517 2.753452 TGCCAAACTTGTCCAAAACGTA 59.247 40.909 0.00 0.00 0.00 3.57
2337 2518 3.381908 TGCCAAACTTGTCCAAAACGTAT 59.618 39.130 0.00 0.00 0.00 3.06
2338 2519 4.579340 TGCCAAACTTGTCCAAAACGTATA 59.421 37.500 0.00 0.00 0.00 1.47
2339 2520 5.151389 GCCAAACTTGTCCAAAACGTATAG 58.849 41.667 0.00 0.00 0.00 1.31
2340 2521 5.695818 CCAAACTTGTCCAAAACGTATAGG 58.304 41.667 0.00 0.00 0.00 2.57
2343 2524 4.251268 ACTTGTCCAAAACGTATAGGCTC 58.749 43.478 0.00 0.00 0.00 4.70
2371 2553 6.811253 TGTGTTAAACATAGGTTTGCTAGG 57.189 37.500 15.41 0.00 46.33 3.02
2375 2557 7.120726 GTGTTAAACATAGGTTTGCTAGGTGAT 59.879 37.037 15.41 0.00 46.33 3.06
2395 2577 0.383949 TTTTTGCAAGCACGACCCTC 59.616 50.000 0.00 0.00 0.00 4.30
2404 2586 1.407979 AGCACGACCCTCGGTTTATAG 59.592 52.381 0.00 0.00 45.59 1.31
2405 2587 1.135721 GCACGACCCTCGGTTTATAGT 59.864 52.381 0.00 0.00 45.59 2.12
2408 2590 4.500375 GCACGACCCTCGGTTTATAGTTAT 60.500 45.833 0.00 0.00 45.59 1.89
2409 2591 4.980434 CACGACCCTCGGTTTATAGTTATG 59.020 45.833 0.00 0.00 45.59 1.90
2411 2593 5.127682 ACGACCCTCGGTTTATAGTTATGTT 59.872 40.000 0.00 0.00 45.59 2.71
2412 2594 6.321181 ACGACCCTCGGTTTATAGTTATGTTA 59.679 38.462 0.00 0.00 45.59 2.41
2414 2596 7.168135 CGACCCTCGGTTTATAGTTATGTTAAC 59.832 40.741 0.00 0.00 35.25 2.01
2415 2597 6.980397 ACCCTCGGTTTATAGTTATGTTAACG 59.020 38.462 0.26 0.00 27.29 3.18
2416 2598 6.074142 CCCTCGGTTTATAGTTATGTTAACGC 60.074 42.308 0.26 0.00 0.00 4.84
2417 2599 6.345250 CCTCGGTTTATAGTTATGTTAACGCG 60.345 42.308 3.53 3.53 0.00 6.01
2459 2645 1.105759 GCATCTTGACATGGGGCCTC 61.106 60.000 0.84 0.00 0.00 4.70
2541 2765 4.023707 AGTGAACACATGAACTTAAGCTGC 60.024 41.667 0.00 0.00 0.00 5.25
2606 2830 3.195396 CCCATGTGGACCAATTCGATTTT 59.805 43.478 0.00 0.00 37.39 1.82
2622 2846 3.490761 CGATTTTGGCAGGTTTCAACTGT 60.491 43.478 0.00 0.00 38.22 3.55
2667 2891 3.173151 TCCTGAATGGTTGAGAGTAGCA 58.827 45.455 0.00 0.00 37.07 3.49
2715 2939 2.905415 TCAATCAACCTCCCATGCTT 57.095 45.000 0.00 0.00 0.00 3.91
2718 2942 2.827322 CAATCAACCTCCCATGCTTTCA 59.173 45.455 0.00 0.00 0.00 2.69
2748 2972 3.724374 ACTGCTTTACGAACTTGCACTA 58.276 40.909 0.00 0.00 0.00 2.74
2773 2997 5.476254 TCAATGTGCATCAGGTATTTGACAA 59.524 36.000 0.00 0.00 0.00 3.18
2774 2998 4.764679 TGTGCATCAGGTATTTGACAAC 57.235 40.909 0.00 0.00 0.00 3.32
2846 3076 3.698040 CCTGCCTCAATACAGAAAATGCT 59.302 43.478 0.00 0.00 35.90 3.79
2853 3083 6.805271 CCTCAATACAGAAAATGCTGTTCTTG 59.195 38.462 0.00 5.07 46.42 3.02
2878 3108 4.916983 TTCCTTGTCATTGTCCAACTTG 57.083 40.909 0.00 0.00 0.00 3.16
2998 3228 8.702438 GTTTGACAATATTTGATGTTCCACTTG 58.298 33.333 0.00 0.00 0.00 3.16
2999 3229 6.389091 TGACAATATTTGATGTTCCACTTGC 58.611 36.000 0.00 0.00 0.00 4.01
3068 3298 6.095021 GTCTTAAAGTAGCCCTGGTTTAATGG 59.905 42.308 0.00 0.00 0.00 3.16
3071 3301 5.523883 AAGTAGCCCTGGTTTAATGGTAA 57.476 39.130 0.00 0.00 0.00 2.85
3072 3302 5.727243 AGTAGCCCTGGTTTAATGGTAAT 57.273 39.130 0.00 0.00 0.00 1.89
3073 3303 5.445964 AGTAGCCCTGGTTTAATGGTAATG 58.554 41.667 0.00 0.00 0.00 1.90
3074 3304 3.031013 AGCCCTGGTTTAATGGTAATGC 58.969 45.455 0.00 0.00 0.00 3.56
3075 3305 3.031013 GCCCTGGTTTAATGGTAATGCT 58.969 45.455 0.00 0.00 0.00 3.79
3076 3306 3.450817 GCCCTGGTTTAATGGTAATGCTT 59.549 43.478 0.00 0.00 0.00 3.91
3100 3330 5.520748 AGTCTGGTAACCATGAAAGGAAT 57.479 39.130 0.00 0.00 30.82 3.01
3158 3388 6.540189 GTCAGTAGCCATGACTTAATGACAAT 59.460 38.462 18.24 0.00 43.03 2.71
3176 3406 5.080969 ACAATGCTTCAATCTGGGAATTG 57.919 39.130 0.00 0.00 37.87 2.32
3219 3449 2.305343 AGCTCTCTTTCTGTGCTTGGAT 59.695 45.455 0.00 0.00 0.00 3.41
3231 3468 1.660560 GCTTGGATCCAGCGCAATGT 61.661 55.000 24.97 0.00 0.00 2.71
3533 3770 8.511604 AATACCTAAATCCAAGTTGTCAGATG 57.488 34.615 1.45 0.00 0.00 2.90
3534 3771 5.256474 ACCTAAATCCAAGTTGTCAGATGG 58.744 41.667 1.45 0.47 0.00 3.51
3535 3772 4.641989 CCTAAATCCAAGTTGTCAGATGGG 59.358 45.833 1.45 0.00 33.66 4.00
3536 3773 2.134789 ATCCAAGTTGTCAGATGGGC 57.865 50.000 1.45 0.00 33.66 5.36
3537 3774 1.067295 TCCAAGTTGTCAGATGGGCT 58.933 50.000 1.45 0.00 33.66 5.19
3538 3775 2.265367 TCCAAGTTGTCAGATGGGCTA 58.735 47.619 1.45 0.00 33.66 3.93
3539 3776 2.846206 TCCAAGTTGTCAGATGGGCTAT 59.154 45.455 1.45 0.00 33.66 2.97
3540 3777 2.947652 CCAAGTTGTCAGATGGGCTATG 59.052 50.000 1.45 0.00 0.00 2.23
3541 3778 2.338577 AGTTGTCAGATGGGCTATGC 57.661 50.000 0.00 0.00 0.00 3.14
3542 3779 1.561076 AGTTGTCAGATGGGCTATGCA 59.439 47.619 0.00 0.00 0.00 3.96
3543 3780 1.945394 GTTGTCAGATGGGCTATGCAG 59.055 52.381 0.00 0.00 0.00 4.41
3557 3794 4.548991 CTATGCAGCAATGGAGAAACTC 57.451 45.455 0.00 0.00 0.00 3.01
3558 3795 2.574006 TGCAGCAATGGAGAAACTCT 57.426 45.000 0.00 0.00 0.00 3.24
3559 3796 2.867624 TGCAGCAATGGAGAAACTCTT 58.132 42.857 0.00 0.00 0.00 2.85
3560 3797 2.555325 TGCAGCAATGGAGAAACTCTTG 59.445 45.455 0.00 0.00 0.00 3.02
3561 3798 2.816087 GCAGCAATGGAGAAACTCTTGA 59.184 45.455 0.00 0.00 0.00 3.02
3562 3799 3.254166 GCAGCAATGGAGAAACTCTTGAA 59.746 43.478 0.00 0.00 0.00 2.69
3563 3800 4.615452 GCAGCAATGGAGAAACTCTTGAAG 60.615 45.833 0.00 0.00 0.00 3.02
3564 3801 3.505293 AGCAATGGAGAAACTCTTGAAGC 59.495 43.478 0.00 0.00 0.00 3.86
3565 3802 3.366781 GCAATGGAGAAACTCTTGAAGCC 60.367 47.826 0.00 0.00 0.00 4.35
3566 3803 4.077822 CAATGGAGAAACTCTTGAAGCCT 58.922 43.478 0.00 0.00 0.00 4.58
3567 3804 3.864789 TGGAGAAACTCTTGAAGCCTT 57.135 42.857 0.00 0.00 0.00 4.35
3568 3805 3.480470 TGGAGAAACTCTTGAAGCCTTG 58.520 45.455 0.00 0.00 0.00 3.61
3569 3806 2.816672 GGAGAAACTCTTGAAGCCTTGG 59.183 50.000 0.00 0.00 0.00 3.61
3580 3817 1.398390 GAAGCCTTGGCAAGATGTACG 59.602 52.381 28.18 11.36 0.00 3.67
3584 3821 2.560504 CCTTGGCAAGATGTACGCATA 58.439 47.619 28.18 0.00 35.07 3.14
3694 3931 5.534654 TGGGATTTTAAGTTTCTCCTGTGTG 59.465 40.000 0.00 0.00 0.00 3.82
3706 3943 1.162698 CCTGTGTGGCTGTCATCAAG 58.837 55.000 0.00 0.00 0.00 3.02
3741 3978 8.236586 GTGTGCATCAAAATACTTCATGTCTTA 58.763 33.333 0.00 0.00 0.00 2.10
3774 4011 4.506758 TCGATCAATGATCAGCTTGTTGA 58.493 39.130 21.51 10.30 38.84 3.18
3785 4022 1.707427 AGCTTGTTGATTCTGGAGGGT 59.293 47.619 0.00 0.00 0.00 4.34
3883 4124 6.988109 ATAGCGTCAATTATGTCGACTTAC 57.012 37.500 17.92 4.31 39.91 2.34
3898 4139 4.840115 TCGACTTACCTTCCCTTTTTCCTA 59.160 41.667 0.00 0.00 0.00 2.94
3902 4143 6.178324 ACTTACCTTCCCTTTTTCCTAATCG 58.822 40.000 0.00 0.00 0.00 3.34
3915 4156 1.517242 CTAATCGGCATGGGCTTCTC 58.483 55.000 0.00 0.00 40.87 2.87
3923 4164 1.542108 GCATGGGCTTCTCTATTCGCT 60.542 52.381 0.00 0.00 36.96 4.93
3949 4190 9.109393 TGAGTTACTGATATTTGCATAAGTTCC 57.891 33.333 0.00 0.00 0.00 3.62
4017 4258 9.400638 GAAGTTATAACTAGATCATTCGGACTG 57.599 37.037 18.31 0.00 38.57 3.51
4102 4343 7.563906 TGGCCTTCTGATTTTATTTTATTGGG 58.436 34.615 3.32 0.00 0.00 4.12
4166 4407 2.529632 AGCCTTGAAACTTCCATTCCC 58.470 47.619 0.00 0.00 0.00 3.97
4170 4411 3.507622 CCTTGAAACTTCCATTCCCTGAC 59.492 47.826 0.00 0.00 0.00 3.51
4176 4417 0.033208 TTCCATTCCCTGACCATGCC 60.033 55.000 0.00 0.00 0.00 4.40
4193 4434 2.721231 CACGTTGCCAACCACAGG 59.279 61.111 1.21 0.00 0.00 4.00
4203 4444 4.865905 TGCCAACCACAGGATAATGTATT 58.134 39.130 0.00 0.00 0.00 1.89
4254 4495 6.633500 TTACAGGATGCATTGCTTATTACC 57.367 37.500 10.49 1.39 42.53 2.85
4269 4510 1.479709 TTACCATGGAAAATGGGCCG 58.520 50.000 21.47 0.00 43.32 6.13
4273 4514 0.249955 CATGGAAAATGGGCCGCTTT 59.750 50.000 0.00 0.00 0.00 3.51
4282 4523 6.317642 GGAAAATGGGCCGCTTTATAAATTTT 59.682 34.615 0.00 1.98 0.00 1.82
4405 4968 6.828785 AGACCAATGGACTACACATTAATTCC 59.171 38.462 6.16 0.00 36.47 3.01
4427 4990 3.393089 AACAGAGAACAGTCGCAGATT 57.607 42.857 0.00 0.00 40.67 2.40
4428 4991 2.953020 ACAGAGAACAGTCGCAGATTC 58.047 47.619 0.00 0.00 40.67 2.52
4429 4992 2.297315 ACAGAGAACAGTCGCAGATTCA 59.703 45.455 0.00 0.00 40.67 2.57
4453 5020 6.727824 ATGCTTGTAGAGACAAACATACAC 57.272 37.500 5.19 0.00 45.95 2.90
4476 5043 5.163642 ACGGATGTAACTTGTGTAGCTCTAG 60.164 44.000 0.00 0.00 0.00 2.43
4481 5048 5.537295 TGTAACTTGTGTAGCTCTAGTTGGA 59.463 40.000 9.82 0.00 31.94 3.53
4498 5070 4.039488 AGTTGGATTTCTTGCTCATTTGCA 59.961 37.500 0.00 0.00 41.65 4.08
4515 5087 7.609960 TCATTTGCAATGCTAAAGTGGATTTA 58.390 30.769 6.82 0.00 32.01 1.40
4516 5088 8.259411 TCATTTGCAATGCTAAAGTGGATTTAT 58.741 29.630 6.82 0.00 32.93 1.40
4517 5089 8.545420 CATTTGCAATGCTAAAGTGGATTTATC 58.455 33.333 6.82 0.00 32.93 1.75
4518 5090 5.820131 TGCAATGCTAAAGTGGATTTATCG 58.180 37.500 6.82 0.00 32.93 2.92
4539 5112 5.152097 TCGTAGTTTCTTTCTCTTACAGCG 58.848 41.667 0.00 0.00 0.00 5.18
4543 5116 7.113965 CGTAGTTTCTTTCTCTTACAGCGTTTA 59.886 37.037 0.00 0.00 0.00 2.01
4545 5118 8.019769 AGTTTCTTTCTCTTACAGCGTTTATC 57.980 34.615 0.00 0.00 0.00 1.75
4589 5162 7.636150 ATGTATTCCTAATCAATATGCAGGC 57.364 36.000 0.00 0.00 0.00 4.85
4593 5166 2.086869 CTAATCAATATGCAGGCCCCG 58.913 52.381 0.00 0.00 0.00 5.73
4603 5176 1.530655 CAGGCCCCGGTTTTGAACT 60.531 57.895 0.00 0.00 0.00 3.01
4604 5177 1.530655 AGGCCCCGGTTTTGAACTG 60.531 57.895 0.00 0.00 37.52 3.16
4605 5178 2.338620 GCCCCGGTTTTGAACTGC 59.661 61.111 0.00 0.00 36.43 4.40
4612 5185 1.501169 GGTTTTGAACTGCATGGCAC 58.499 50.000 0.00 0.00 33.79 5.01
4615 5188 1.689984 TTTGAACTGCATGGCACTGA 58.310 45.000 0.00 0.00 33.79 3.41
4644 5217 0.322648 TGATGCTGGACCTGTCACTG 59.677 55.000 0.00 0.00 0.00 3.66
4701 5277 2.163818 TCAACCGGACACTGATGAAC 57.836 50.000 9.46 0.00 0.00 3.18
4712 5288 5.760253 GGACACTGATGAACATAATCGGAAT 59.240 40.000 0.00 0.00 34.94 3.01
4715 5291 8.370493 ACACTGATGAACATAATCGGAATAAG 57.630 34.615 0.00 0.00 34.94 1.73
4823 5399 2.548875 CAGAGCTCTCAGTGTATTGGC 58.451 52.381 14.96 0.00 0.00 4.52
5023 5599 6.534436 GGTGCAGATAATGATGCTAGATGTAG 59.466 42.308 0.00 0.00 42.98 2.74
5044 5623 1.000060 CACTGCAATTTCTGTGGGTGG 60.000 52.381 7.13 0.00 33.85 4.61
5051 5630 0.474854 TTTCTGTGGGTGGCCCTAGA 60.475 55.000 0.00 6.69 45.70 2.43
5114 5693 7.465353 TGTGAAAATTGATAAGGATTCAGCA 57.535 32.000 0.00 0.00 0.00 4.41
5144 5723 4.439305 TGTATTTTGTCTTGAGCATGCC 57.561 40.909 15.66 6.65 0.00 4.40
5201 5780 4.503123 GGGGCCCATGTTATTCTTTTATGC 60.503 45.833 26.86 0.00 0.00 3.14
5240 5819 5.374071 TCAAGCTGCATAGTCATCATGATT 58.626 37.500 5.16 0.00 0.00 2.57
5297 5877 2.373169 TGAACTTGTGGCATCCTCTCTT 59.627 45.455 0.00 0.00 0.00 2.85
5301 5881 3.521126 ACTTGTGGCATCCTCTCTTATGT 59.479 43.478 0.00 0.00 0.00 2.29
5303 5883 3.877559 TGTGGCATCCTCTCTTATGTTG 58.122 45.455 0.00 0.00 0.00 3.33
5304 5884 3.264193 TGTGGCATCCTCTCTTATGTTGT 59.736 43.478 0.00 0.00 0.00 3.32
5307 5887 5.468072 GTGGCATCCTCTCTTATGTTGTATG 59.532 44.000 0.00 0.00 0.00 2.39
5313 5896 8.633561 CATCCTCTCTTATGTTGTATGTACTCA 58.366 37.037 0.00 0.00 0.00 3.41
5382 5969 5.422666 TGCAGTACTGTTCAAAATCACAG 57.577 39.130 23.44 0.00 45.15 3.66
5393 5980 9.429359 CTGTTCAAAATCACAGTAATACTCTCT 57.571 33.333 0.00 0.00 36.44 3.10
5414 6001 5.785243 TCTATCAACGTTGGTAATGTCACA 58.215 37.500 27.02 4.97 0.00 3.58
5422 6009 8.808529 CAACGTTGGTAATGTCACAAATTAAAA 58.191 29.630 20.71 0.00 0.00 1.52
5435 6022 9.959749 GTCACAAATTAAAATTAGACCTGTTGA 57.040 29.630 0.00 0.00 0.00 3.18
5451 6038 4.318332 CTGTTGAGCTTGAGGTGTTCATA 58.682 43.478 0.00 0.00 35.27 2.15
5464 6051 9.739276 TTGAGGTGTTCATAATACTGATTCTTT 57.261 29.630 0.00 0.00 35.27 2.52
5480 6067 8.078596 ACTGATTCTTTGTTCTGAAAGCATAAC 58.921 33.333 0.00 0.00 33.63 1.89
5483 6070 6.942532 TCTTTGTTCTGAAAGCATAACTGT 57.057 33.333 0.00 0.00 33.62 3.55
5500 6087 7.651704 GCATAACTGTCTTGTTTGTTATGGTTT 59.348 33.333 19.50 0.00 45.72 3.27
5501 6088 8.967218 CATAACTGTCTTGTTTGTTATGGTTTG 58.033 33.333 13.65 0.00 43.74 2.93
5621 6208 3.784763 ACATGGAGGACAGGAAGATGATT 59.215 43.478 0.00 0.00 34.35 2.57
5627 6214 5.338708 GGAGGACAGGAAGATGATTGAAGAA 60.339 44.000 0.00 0.00 0.00 2.52
5827 6414 1.004918 AAAACTGCGAGGGGAGTCG 60.005 57.895 0.00 0.00 44.87 4.18
5833 6420 3.053849 GCGAGGGGAGTCGAGACAC 62.054 68.421 5.99 0.00 42.85 3.67
5940 6527 1.722034 AAGCAGTGAACTGGAGGAGA 58.278 50.000 12.20 0.00 43.94 3.71
5942 6529 0.036858 GCAGTGAACTGGAGGAGACC 60.037 60.000 12.20 0.00 43.94 3.85
6005 6592 8.537016 AGTAGCACTATAACAGATGTACCAAAA 58.463 33.333 0.00 0.00 0.00 2.44
6006 6593 9.326413 GTAGCACTATAACAGATGTACCAAAAT 57.674 33.333 0.00 0.00 0.00 1.82
6007 6594 8.438676 AGCACTATAACAGATGTACCAAAATC 57.561 34.615 0.00 0.00 0.00 2.17
6075 6662 1.689575 CCAAGAGGCCCAGACTAGCTA 60.690 57.143 0.00 0.00 0.00 3.32
6081 6668 0.691413 GCCCAGACTAGCTAAGGGGT 60.691 60.000 17.25 3.25 39.96 4.95
6249 6863 2.031870 GAACAAGGCCACCAAAGAAGT 58.968 47.619 5.01 0.00 0.00 3.01
6284 6898 4.863131 GCAAAGAAGCAAATGAAGATGAGG 59.137 41.667 0.00 0.00 0.00 3.86
6289 6903 6.243900 AGAAGCAAATGAAGATGAGGAAAGA 58.756 36.000 0.00 0.00 0.00 2.52
6334 6951 1.139654 TCCAAAGGATGATGAGGAGCG 59.860 52.381 0.00 0.00 0.00 5.03
6417 7034 0.669318 TAAGCGCAGAACCAGAACCG 60.669 55.000 11.47 0.00 0.00 4.44
6419 7036 1.741770 GCGCAGAACCAGAACCGAT 60.742 57.895 0.30 0.00 0.00 4.18
6512 7129 1.450848 CACATGCAGCATCGAGGGT 60.451 57.895 4.38 0.00 0.00 4.34
6527 7144 2.427506 GAGGGTTGTTCGATGAGCTTT 58.572 47.619 0.00 0.00 0.00 3.51
6533 7150 2.832563 TGTTCGATGAGCTTTGACACA 58.167 42.857 0.00 0.00 0.00 3.72
6540 7157 5.931724 TCGATGAGCTTTGACACAAGAAATA 59.068 36.000 0.00 0.00 0.00 1.40
6560 7177 0.403271 AACTGTCCCTGCATGAGCTT 59.597 50.000 0.00 0.00 42.74 3.74
6566 7183 0.738975 CCCTGCATGAGCTTGACATG 59.261 55.000 9.05 9.05 45.19 3.21
6575 7192 2.268076 GCTTGACATGTGCCCGGTT 61.268 57.895 1.15 0.00 0.00 4.44
6576 7193 1.580942 CTTGACATGTGCCCGGTTG 59.419 57.895 1.15 0.00 0.00 3.77
6602 7219 3.003793 GCTGTGGAAAGAAGTTCTTCACC 59.996 47.826 24.08 23.81 35.27 4.02
6637 7254 1.228245 AGCACGGCAAGGTTCACAT 60.228 52.632 0.00 0.00 0.00 3.21
6697 7320 1.000731 GAGGGCTCCAAGAGATCATCG 59.999 57.143 0.00 0.00 0.00 3.84
6707 7330 0.941463 GAGATCATCGGATGCGCGTT 60.941 55.000 13.15 0.00 32.67 4.84
6787 7410 3.857854 CCTGCATGAGCGCGACAC 61.858 66.667 12.10 0.00 46.23 3.67
6875 7498 4.039357 ACAGACGACCGTCCGCTG 62.039 66.667 17.62 12.47 45.59 5.18
6941 7564 1.270907 CCAGGACAGAGCACCTTAGT 58.729 55.000 0.00 0.00 33.91 2.24
7005 7628 2.101750 TGTGCAGAGACGTTCAGGTTTA 59.898 45.455 0.00 0.00 0.00 2.01
7015 7638 8.478877 AGAGACGTTCAGGTTTATATCAGATTT 58.521 33.333 0.00 0.00 0.00 2.17
7099 7722 7.054751 AGCAGGAGAAAAAGTTATGGTATACC 58.945 38.462 15.50 15.50 0.00 2.73
7168 7791 5.698545 AGCTCACGATTATCTTCATTTAGCC 59.301 40.000 0.00 0.00 0.00 3.93
7171 7794 7.246674 TCACGATTATCTTCATTTAGCCAAC 57.753 36.000 0.00 0.00 0.00 3.77
7180 7803 8.614469 ATCTTCATTTAGCCAACTCTATTAGC 57.386 34.615 0.00 0.00 0.00 3.09
7181 7804 6.992715 TCTTCATTTAGCCAACTCTATTAGCC 59.007 38.462 0.00 0.00 0.00 3.93
7210 7833 3.766545 ACAATGGGTGTGCTTTCTATGT 58.233 40.909 0.00 0.00 39.72 2.29
7211 7834 4.917385 ACAATGGGTGTGCTTTCTATGTA 58.083 39.130 0.00 0.00 39.72 2.29
7212 7835 5.509498 ACAATGGGTGTGCTTTCTATGTAT 58.491 37.500 0.00 0.00 39.72 2.29
7257 7881 9.573166 TGGTCATTTCTATGATTACTAATTGGG 57.427 33.333 0.00 0.00 42.49 4.12
7258 7882 9.793259 GGTCATTTCTATGATTACTAATTGGGA 57.207 33.333 0.00 0.00 42.49 4.37
7262 7886 9.981460 ATTTCTATGATTACTAATTGGGATCCC 57.019 33.333 25.22 25.22 0.00 3.85
7263 7887 8.757307 TTCTATGATTACTAATTGGGATCCCT 57.243 34.615 31.05 14.28 36.94 4.20
7264 7888 8.757307 TCTATGATTACTAATTGGGATCCCTT 57.243 34.615 31.05 20.12 36.94 3.95
7265 7889 9.852784 TCTATGATTACTAATTGGGATCCCTTA 57.147 33.333 31.05 20.16 36.94 2.69
7266 7890 9.892130 CTATGATTACTAATTGGGATCCCTTAC 57.108 37.037 31.05 10.54 36.94 2.34
7267 7891 7.947782 TGATTACTAATTGGGATCCCTTACT 57.052 36.000 31.05 15.17 36.94 2.24
7268 7892 9.629649 ATGATTACTAATTGGGATCCCTTACTA 57.370 33.333 31.05 15.47 36.94 1.82
7282 7906 8.308207 GGATCCCTTACTAATTTAGCTAGTCTG 58.692 40.741 0.00 0.00 31.98 3.51
7326 7950 3.863424 GTCGGATGTATTGACGTTGTCAT 59.137 43.478 0.00 0.00 42.40 3.06
7384 8011 2.143122 TCCGCTTCTTTGCTGTGTTAG 58.857 47.619 0.00 0.00 0.00 2.34
7471 8098 4.202440 ACCATCTGATCCAAAGCCTGATAG 60.202 45.833 0.00 0.00 0.00 2.08
7501 8128 1.067846 GGTGATGCCGCGATAGTATGA 60.068 52.381 8.23 0.00 39.35 2.15
7502 8129 1.986378 GTGATGCCGCGATAGTATGAC 59.014 52.381 8.23 0.00 39.35 3.06
7588 8882 1.195448 GTCGTGGATCTGTTTGTGCTG 59.805 52.381 0.00 0.00 0.00 4.41
7589 8883 1.202639 TCGTGGATCTGTTTGTGCTGT 60.203 47.619 0.00 0.00 0.00 4.40
7590 8884 1.603802 CGTGGATCTGTTTGTGCTGTT 59.396 47.619 0.00 0.00 0.00 3.16
7591 8885 2.602933 CGTGGATCTGTTTGTGCTGTTG 60.603 50.000 0.00 0.00 0.00 3.33
7592 8886 1.955778 TGGATCTGTTTGTGCTGTTGG 59.044 47.619 0.00 0.00 0.00 3.77
7593 8887 1.956477 GGATCTGTTTGTGCTGTTGGT 59.044 47.619 0.00 0.00 0.00 3.67
7659 8953 1.619654 TTTGGTGCTGTCAGGATTGG 58.380 50.000 1.14 0.00 0.00 3.16
7660 8954 0.895100 TTGGTGCTGTCAGGATTGGC 60.895 55.000 1.14 0.00 0.00 4.52
7684 8978 1.003233 GGAGTGGGACTGGAACTGC 60.003 63.158 0.00 0.00 0.00 4.40
7731 10289 1.554583 AAAGGGCTCCTCCGTTCCTC 61.555 60.000 0.00 0.00 41.75 3.71
7769 10327 1.074775 TTGGAGAGCCCGCAAACAT 59.925 52.632 0.00 0.00 37.93 2.71
7799 10358 3.489568 CCCGTACCAAGTTTGTTTCAACC 60.490 47.826 0.00 0.00 0.00 3.77
7809 10368 5.016831 AGTTTGTTTCAACCTCAGTCCTTT 58.983 37.500 0.00 0.00 0.00 3.11
7811 10370 6.833933 AGTTTGTTTCAACCTCAGTCCTTTAT 59.166 34.615 0.00 0.00 0.00 1.40
7812 10371 7.996644 AGTTTGTTTCAACCTCAGTCCTTTATA 59.003 33.333 0.00 0.00 0.00 0.98
7814 10373 8.934023 TTGTTTCAACCTCAGTCCTTTATATT 57.066 30.769 0.00 0.00 0.00 1.28
7861 10420 6.256686 TGCAAGCAAAATCAAACAAATGAAC 58.743 32.000 0.00 0.00 32.06 3.18
7885 10444 4.996122 TGAGCAAGGCATAACAAAATTTGG 59.004 37.500 10.71 0.00 34.12 3.28
7889 10448 4.363991 AGGCATAACAAAATTTGGCCAA 57.636 36.364 16.05 16.05 42.26 4.52
7912 10471 5.310409 TGCCTAATAAGGGATCTTCAAGG 57.690 43.478 0.00 0.00 43.87 3.61
7913 10472 4.075682 GCCTAATAAGGGATCTTCAAGGC 58.924 47.826 0.00 0.00 43.87 4.35
7914 10473 4.319177 CCTAATAAGGGATCTTCAAGGCG 58.681 47.826 0.00 0.00 39.48 5.52
7915 10474 2.938956 ATAAGGGATCTTCAAGGCGG 57.061 50.000 0.00 0.00 34.59 6.13
7916 10475 1.874129 TAAGGGATCTTCAAGGCGGA 58.126 50.000 0.00 0.00 34.59 5.54
7917 10476 0.253327 AAGGGATCTTCAAGGCGGAC 59.747 55.000 0.00 0.00 0.00 4.79
7918 10477 1.153147 GGGATCTTCAAGGCGGACC 60.153 63.158 0.00 0.00 0.00 4.46
7919 10478 1.153147 GGATCTTCAAGGCGGACCC 60.153 63.158 0.00 0.00 36.11 4.46
7921 10480 0.179070 GATCTTCAAGGCGGACCCTC 60.179 60.000 0.00 0.00 45.62 4.30
7922 10481 0.909610 ATCTTCAAGGCGGACCCTCA 60.910 55.000 0.00 0.00 45.62 3.86
7923 10482 1.125093 TCTTCAAGGCGGACCCTCAA 61.125 55.000 0.00 0.00 45.62 3.02
7924 10483 0.250727 CTTCAAGGCGGACCCTCAAA 60.251 55.000 0.00 0.00 45.62 2.69
7925 10484 0.536460 TTCAAGGCGGACCCTCAAAC 60.536 55.000 0.00 0.00 45.62 2.93
7926 10485 1.971695 CAAGGCGGACCCTCAAACC 60.972 63.158 0.00 0.00 45.62 3.27
7927 10486 3.546714 AAGGCGGACCCTCAAACCG 62.547 63.158 0.00 0.00 45.62 4.44
7935 10494 4.038080 CCTCAAACCGCCCGCAAC 62.038 66.667 0.00 0.00 0.00 4.17
7936 10495 2.978010 CTCAAACCGCCCGCAACT 60.978 61.111 0.00 0.00 0.00 3.16
7937 10496 3.254014 CTCAAACCGCCCGCAACTG 62.254 63.158 0.00 0.00 0.00 3.16
7938 10497 3.591835 CAAACCGCCCGCAACTGT 61.592 61.111 0.00 0.00 0.00 3.55
7939 10498 3.284449 AAACCGCCCGCAACTGTC 61.284 61.111 0.00 0.00 0.00 3.51
7947 10506 2.047274 CGCAACTGTCCGGACCAT 60.047 61.111 31.19 16.79 0.00 3.55
7948 10507 2.390599 CGCAACTGTCCGGACCATG 61.391 63.158 31.19 25.19 0.00 3.66
7949 10508 2.690778 GCAACTGTCCGGACCATGC 61.691 63.158 31.19 29.81 0.00 4.06
7950 10509 1.302431 CAACTGTCCGGACCATGCA 60.302 57.895 31.19 11.86 0.00 3.96
7951 10510 1.003355 AACTGTCCGGACCATGCAG 60.003 57.895 31.19 22.67 0.00 4.41
7952 10511 1.768684 AACTGTCCGGACCATGCAGT 61.769 55.000 31.19 23.33 41.51 4.40
7953 10512 1.003355 CTGTCCGGACCATGCAGTT 60.003 57.895 31.19 0.00 0.00 3.16
7954 10513 0.606401 CTGTCCGGACCATGCAGTTT 60.606 55.000 31.19 0.00 0.00 2.66
7955 10514 0.888736 TGTCCGGACCATGCAGTTTG 60.889 55.000 31.19 0.00 0.00 2.93
7956 10515 1.971167 TCCGGACCATGCAGTTTGC 60.971 57.895 0.00 0.00 45.29 3.68
7957 10516 2.568090 CGGACCATGCAGTTTGCC 59.432 61.111 0.00 0.00 44.23 4.52
7958 10517 2.267351 CGGACCATGCAGTTTGCCA 61.267 57.895 0.00 0.00 44.23 4.92
7959 10518 1.597797 CGGACCATGCAGTTTGCCAT 61.598 55.000 0.00 0.00 44.23 4.40
7960 10519 0.609662 GGACCATGCAGTTTGCCATT 59.390 50.000 0.00 0.00 44.23 3.16
7961 10520 1.404583 GGACCATGCAGTTTGCCATTC 60.405 52.381 0.00 0.00 44.23 2.67
7962 10521 1.273048 GACCATGCAGTTTGCCATTCA 59.727 47.619 0.00 0.00 44.23 2.57
7963 10522 1.693062 ACCATGCAGTTTGCCATTCAA 59.307 42.857 0.00 0.00 44.23 2.69
7964 10523 2.070783 CCATGCAGTTTGCCATTCAAC 58.929 47.619 0.00 0.00 44.23 3.18
7965 10524 1.722464 CATGCAGTTTGCCATTCAACG 59.278 47.619 0.00 0.00 44.23 4.10
7966 10525 0.597118 TGCAGTTTGCCATTCAACGC 60.597 50.000 0.00 0.00 44.23 4.84
7967 10526 1.608093 GCAGTTTGCCATTCAACGCG 61.608 55.000 3.53 3.53 37.42 6.01
7968 10527 1.003262 CAGTTTGCCATTCAACGCGG 61.003 55.000 12.47 0.00 33.73 6.46
7969 10528 1.732683 GTTTGCCATTCAACGCGGG 60.733 57.895 12.47 1.49 33.73 6.13
7970 10529 3.565910 TTTGCCATTCAACGCGGGC 62.566 57.895 12.47 13.35 46.58 6.13
7973 10532 2.124901 CCATTCAACGCGGGCCTA 60.125 61.111 12.47 0.00 0.00 3.93
7974 10533 1.525995 CCATTCAACGCGGGCCTAT 60.526 57.895 12.47 0.00 0.00 2.57
7975 10534 0.250124 CCATTCAACGCGGGCCTATA 60.250 55.000 12.47 0.00 0.00 1.31
7976 10535 1.610624 CCATTCAACGCGGGCCTATAT 60.611 52.381 12.47 0.00 0.00 0.86
7977 10536 1.732259 CATTCAACGCGGGCCTATATC 59.268 52.381 12.47 0.00 0.00 1.63
7978 10537 0.753867 TTCAACGCGGGCCTATATCA 59.246 50.000 12.47 0.00 0.00 2.15
7979 10538 0.317160 TCAACGCGGGCCTATATCAG 59.683 55.000 12.47 0.00 0.00 2.90
7980 10539 0.033504 CAACGCGGGCCTATATCAGT 59.966 55.000 12.47 0.00 0.00 3.41
7981 10540 1.271379 CAACGCGGGCCTATATCAGTA 59.729 52.381 12.47 0.00 0.00 2.74
7982 10541 1.848652 ACGCGGGCCTATATCAGTAT 58.151 50.000 12.47 0.00 0.00 2.12
7983 10542 1.476891 ACGCGGGCCTATATCAGTATG 59.523 52.381 12.47 0.00 37.54 2.39
7997 10556 4.487714 TCAGTATGACTTTGACATCCCC 57.512 45.455 0.00 0.00 42.56 4.81
7998 10557 3.118775 TCAGTATGACTTTGACATCCCCG 60.119 47.826 0.00 0.00 42.56 5.73
7999 10558 2.170607 AGTATGACTTTGACATCCCCGG 59.829 50.000 0.00 0.00 0.00 5.73
8000 10559 0.394352 ATGACTTTGACATCCCCGGC 60.394 55.000 0.00 0.00 0.00 6.13
8001 10560 1.749258 GACTTTGACATCCCCGGCC 60.749 63.158 0.00 0.00 0.00 6.13
8002 10561 2.440247 CTTTGACATCCCCGGCCC 60.440 66.667 0.00 0.00 0.00 5.80
8003 10562 3.260888 TTTGACATCCCCGGCCCA 61.261 61.111 0.00 0.00 0.00 5.36
8004 10563 3.577334 TTTGACATCCCCGGCCCAC 62.577 63.158 0.00 0.00 0.00 4.61
8013 10572 4.614036 CCGGCCCACCCAAAACCT 62.614 66.667 0.00 0.00 0.00 3.50
8014 10573 2.523168 CGGCCCACCCAAAACCTT 60.523 61.111 0.00 0.00 0.00 3.50
8015 10574 2.570284 CGGCCCACCCAAAACCTTC 61.570 63.158 0.00 0.00 0.00 3.46
8016 10575 2.214216 GGCCCACCCAAAACCTTCC 61.214 63.158 0.00 0.00 0.00 3.46
8017 10576 2.214216 GCCCACCCAAAACCTTCCC 61.214 63.158 0.00 0.00 0.00 3.97
8018 10577 1.546738 CCCACCCAAAACCTTCCCT 59.453 57.895 0.00 0.00 0.00 4.20
8019 10578 0.831711 CCCACCCAAAACCTTCCCTG 60.832 60.000 0.00 0.00 0.00 4.45
8020 10579 0.831711 CCACCCAAAACCTTCCCTGG 60.832 60.000 0.00 0.00 0.00 4.45
8021 10580 0.187361 CACCCAAAACCTTCCCTGGA 59.813 55.000 0.00 0.00 0.00 3.86
8022 10581 0.187606 ACCCAAAACCTTCCCTGGAC 59.812 55.000 0.00 0.00 0.00 4.02
8023 10582 0.541998 CCCAAAACCTTCCCTGGACC 60.542 60.000 0.00 0.00 0.00 4.46
8024 10583 0.541998 CCAAAACCTTCCCTGGACCC 60.542 60.000 0.00 0.00 0.00 4.46
8025 10584 0.541998 CAAAACCTTCCCTGGACCCC 60.542 60.000 0.00 0.00 0.00 4.95
8026 10585 2.076597 AAAACCTTCCCTGGACCCCG 62.077 60.000 0.00 0.00 0.00 5.73
8034 10593 3.691342 CTGGACCCCGCGACTCAA 61.691 66.667 8.23 0.00 0.00 3.02
8035 10594 3.000819 TGGACCCCGCGACTCAAT 61.001 61.111 8.23 0.00 0.00 2.57
8036 10595 2.202892 GGACCCCGCGACTCAATC 60.203 66.667 8.23 0.00 0.00 2.67
8037 10596 2.202892 GACCCCGCGACTCAATCC 60.203 66.667 8.23 0.00 0.00 3.01
8038 10597 2.683933 ACCCCGCGACTCAATCCT 60.684 61.111 8.23 0.00 0.00 3.24
8039 10598 2.107141 CCCCGCGACTCAATCCTC 59.893 66.667 8.23 0.00 0.00 3.71
8040 10599 2.107141 CCCGCGACTCAATCCTCC 59.893 66.667 8.23 0.00 0.00 4.30
8041 10600 2.107141 CCGCGACTCAATCCTCCC 59.893 66.667 8.23 0.00 0.00 4.30
8042 10601 2.107141 CGCGACTCAATCCTCCCC 59.893 66.667 0.00 0.00 0.00 4.81
8043 10602 2.107141 GCGACTCAATCCTCCCCG 59.893 66.667 0.00 0.00 0.00 5.73
8044 10603 2.722201 GCGACTCAATCCTCCCCGT 61.722 63.158 0.00 0.00 0.00 5.28
8045 10604 1.898154 CGACTCAATCCTCCCCGTT 59.102 57.895 0.00 0.00 0.00 4.44
8046 10605 0.249398 CGACTCAATCCTCCCCGTTT 59.751 55.000 0.00 0.00 0.00 3.60
8047 10606 1.338769 CGACTCAATCCTCCCCGTTTT 60.339 52.381 0.00 0.00 0.00 2.43
8048 10607 2.357075 GACTCAATCCTCCCCGTTTTC 58.643 52.381 0.00 0.00 0.00 2.29
8049 10608 1.985895 ACTCAATCCTCCCCGTTTTCT 59.014 47.619 0.00 0.00 0.00 2.52
8050 10609 2.027100 ACTCAATCCTCCCCGTTTTCTC 60.027 50.000 0.00 0.00 0.00 2.87
8051 10610 2.237392 CTCAATCCTCCCCGTTTTCTCT 59.763 50.000 0.00 0.00 0.00 3.10
8052 10611 2.236395 TCAATCCTCCCCGTTTTCTCTC 59.764 50.000 0.00 0.00 0.00 3.20
8053 10612 1.205055 ATCCTCCCCGTTTTCTCTCC 58.795 55.000 0.00 0.00 0.00 3.71
8054 10613 0.116541 TCCTCCCCGTTTTCTCTCCT 59.883 55.000 0.00 0.00 0.00 3.69
8055 10614 0.984995 CCTCCCCGTTTTCTCTCCTT 59.015 55.000 0.00 0.00 0.00 3.36
8056 10615 1.066071 CCTCCCCGTTTTCTCTCCTTC 60.066 57.143 0.00 0.00 0.00 3.46
8057 10616 0.981943 TCCCCGTTTTCTCTCCTTCC 59.018 55.000 0.00 0.00 0.00 3.46
8058 10617 0.984995 CCCCGTTTTCTCTCCTTCCT 59.015 55.000 0.00 0.00 0.00 3.36
8059 10618 1.351350 CCCCGTTTTCTCTCCTTCCTT 59.649 52.381 0.00 0.00 0.00 3.36
8060 10619 2.615747 CCCCGTTTTCTCTCCTTCCTTC 60.616 54.545 0.00 0.00 0.00 3.46
8061 10620 2.303311 CCCGTTTTCTCTCCTTCCTTCT 59.697 50.000 0.00 0.00 0.00 2.85
8062 10621 3.244596 CCCGTTTTCTCTCCTTCCTTCTT 60.245 47.826 0.00 0.00 0.00 2.52
8063 10622 4.390264 CCGTTTTCTCTCCTTCCTTCTTT 58.610 43.478 0.00 0.00 0.00 2.52
8064 10623 4.452795 CCGTTTTCTCTCCTTCCTTCTTTC 59.547 45.833 0.00 0.00 0.00 2.62
8065 10624 5.301555 CGTTTTCTCTCCTTCCTTCTTTCT 58.698 41.667 0.00 0.00 0.00 2.52
8066 10625 5.407084 CGTTTTCTCTCCTTCCTTCTTTCTC 59.593 44.000 0.00 0.00 0.00 2.87
8067 10626 4.792521 TTCTCTCCTTCCTTCTTTCTCG 57.207 45.455 0.00 0.00 0.00 4.04
8068 10627 2.494073 TCTCTCCTTCCTTCTTTCTCGC 59.506 50.000 0.00 0.00 0.00 5.03
8069 10628 2.495669 CTCTCCTTCCTTCTTTCTCGCT 59.504 50.000 0.00 0.00 0.00 4.93
8070 10629 2.900546 TCTCCTTCCTTCTTTCTCGCTT 59.099 45.455 0.00 0.00 0.00 4.68
8071 10630 2.999355 CTCCTTCCTTCTTTCTCGCTTG 59.001 50.000 0.00 0.00 0.00 4.01
8072 10631 1.466558 CCTTCCTTCTTTCTCGCTTGC 59.533 52.381 0.00 0.00 0.00 4.01
8073 10632 1.466558 CTTCCTTCTTTCTCGCTTGCC 59.533 52.381 0.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.242017 CAACTTACAGGGCAGCTTGC 59.758 55.000 0.00 0.00 44.08 4.01
34 35 7.662604 AGAATGGCTGCAAAAAGATTTAAAG 57.337 32.000 0.50 0.00 0.00 1.85
35 36 8.344098 CAAAGAATGGCTGCAAAAAGATTTAAA 58.656 29.630 0.50 0.00 0.00 1.52
36 37 7.520292 GCAAAGAATGGCTGCAAAAAGATTTAA 60.520 33.333 0.50 0.00 36.09 1.52
37 38 6.073112 GCAAAGAATGGCTGCAAAAAGATTTA 60.073 34.615 0.50 0.00 36.09 1.40
42 43 2.096614 CGCAAAGAATGGCTGCAAAAAG 60.097 45.455 0.50 0.00 35.78 2.27
141 142 1.301293 GGACTGGGAAGCCAGGAAG 59.699 63.158 0.00 0.00 41.67 3.46
147 148 2.361737 GCTTGGGACTGGGAAGCC 60.362 66.667 0.00 0.00 36.84 4.35
162 166 0.681564 ATCAGGAGGAAGTCGTCGCT 60.682 55.000 0.00 0.00 0.00 4.93
183 187 5.714806 TGATTGATTGATGGATGGATGGATG 59.285 40.000 0.00 0.00 0.00 3.51
184 188 5.899278 TGATTGATTGATGGATGGATGGAT 58.101 37.500 0.00 0.00 0.00 3.41
185 189 5.327737 TGATTGATTGATGGATGGATGGA 57.672 39.130 0.00 0.00 0.00 3.41
186 190 6.351033 GGATTGATTGATTGATGGATGGATGG 60.351 42.308 0.00 0.00 0.00 3.51
187 191 6.210584 TGGATTGATTGATTGATGGATGGATG 59.789 38.462 0.00 0.00 0.00 3.51
199 203 5.240183 GTCACCGATGATGGATTGATTGATT 59.760 40.000 0.00 0.00 37.14 2.57
311 316 4.020396 AGGATGCCACTACAGATCATCATC 60.020 45.833 0.00 0.00 36.25 2.92
358 363 6.948353 AGTTATACAGATTTACATGCGCAAG 58.052 36.000 17.11 14.15 43.44 4.01
359 364 6.918892 AGTTATACAGATTTACATGCGCAA 57.081 33.333 17.11 0.00 0.00 4.85
360 365 6.714492 CAAGTTATACAGATTTACATGCGCA 58.286 36.000 14.96 14.96 0.00 6.09
440 486 1.163554 CTTCAAGTGAGAGGGCAAGC 58.836 55.000 0.00 0.00 0.00 4.01
441 487 2.847327 TCTTCAAGTGAGAGGGCAAG 57.153 50.000 0.00 0.00 0.00 4.01
442 488 3.576078 TTTCTTCAAGTGAGAGGGCAA 57.424 42.857 0.00 0.00 0.00 4.52
443 489 3.560025 GGATTTCTTCAAGTGAGAGGGCA 60.560 47.826 0.00 0.00 0.00 5.36
454 500 5.300539 TGGAAATTGACACGGATTTCTTCAA 59.699 36.000 9.74 0.00 40.43 2.69
484 530 4.719273 TCAACCAAAAGGGAAAAGAATGGT 59.281 37.500 0.00 0.00 41.23 3.55
487 533 7.135591 TGATTCAACCAAAAGGGAAAAGAAT 57.864 32.000 0.00 0.00 41.15 2.40
490 547 6.146021 CGATTGATTCAACCAAAAGGGAAAAG 59.854 38.462 0.15 0.00 41.15 2.27
515 575 2.349912 GCGCCAGTTTCTTTTCAGAGAC 60.350 50.000 0.00 0.00 34.86 3.36
549 612 1.701704 GAAGACGCCTTGCCATTTTG 58.298 50.000 0.00 0.00 31.62 2.44
563 626 3.690475 TTCCTTTCCCCTAACGAAGAC 57.310 47.619 0.00 0.00 0.00 3.01
580 646 2.289631 CCCAGTGCCATTTTCCTTTTCC 60.290 50.000 0.00 0.00 0.00 3.13
618 686 2.014335 ATACGTAACGGCCCTTTCAC 57.986 50.000 0.00 0.00 0.00 3.18
647 723 3.646715 TTGGTTGGGGGCTCGGAG 61.647 66.667 0.00 0.00 0.00 4.63
648 724 3.961414 GTTGGTTGGGGGCTCGGA 61.961 66.667 0.00 0.00 0.00 4.55
654 751 3.302344 CTTGCGGTTGGTTGGGGG 61.302 66.667 0.00 0.00 0.00 5.40
669 766 1.531578 GCGGTTTCTTTCTCGCTTCTT 59.468 47.619 0.00 0.00 44.10 2.52
670 767 1.149148 GCGGTTTCTTTCTCGCTTCT 58.851 50.000 0.00 0.00 44.10 2.85
671 768 3.659382 GCGGTTTCTTTCTCGCTTC 57.341 52.632 0.00 0.00 44.10 3.86
750 852 3.411351 CGTTTGCCTGTCCGTCCG 61.411 66.667 0.00 0.00 0.00 4.79
751 853 2.029964 TCGTTTGCCTGTCCGTCC 59.970 61.111 0.00 0.00 0.00 4.79
759 861 4.636435 CGGGTGGGTCGTTTGCCT 62.636 66.667 0.00 0.00 0.00 4.75
776 878 1.509004 GCCTGTGGACTCGAGTCTC 59.491 63.158 36.98 29.60 44.20 3.36
850 955 2.812619 GCGAATGGGAGGGGAGGAG 61.813 68.421 0.00 0.00 0.00 3.69
851 956 2.768344 GCGAATGGGAGGGGAGGA 60.768 66.667 0.00 0.00 0.00 3.71
863 968 1.524482 GCAGAGGAGGAAGGCGAAT 59.476 57.895 0.00 0.00 0.00 3.34
883 988 4.992511 CCGGGGGTTTGCGACGAA 62.993 66.667 0.00 0.00 0.00 3.85
926 1040 1.252904 GCATTTGGAGGCTTGGCAGA 61.253 55.000 0.00 0.00 0.00 4.26
929 1043 1.876497 TTCGCATTTGGAGGCTTGGC 61.876 55.000 0.00 0.00 0.00 4.52
931 1045 1.917273 CATTCGCATTTGGAGGCTTG 58.083 50.000 0.00 0.00 0.00 4.01
932 1046 0.174162 GCATTCGCATTTGGAGGCTT 59.826 50.000 0.00 0.00 38.36 4.35
933 1047 1.811860 GCATTCGCATTTGGAGGCT 59.188 52.632 0.00 0.00 38.36 4.58
934 1048 1.587088 CGCATTCGCATTTGGAGGC 60.587 57.895 0.00 0.00 38.40 4.70
956 1085 0.103208 AGTTTCCGCCTCGATGCTAG 59.897 55.000 11.00 2.51 0.00 3.42
961 1090 2.125106 GGCAGTTTCCGCCTCGAT 60.125 61.111 0.00 0.00 46.56 3.59
1620 1782 1.296392 CATGTTCCAGGCCGTCTCA 59.704 57.895 0.00 0.00 0.00 3.27
1888 2050 2.066999 GGCTGTCCTCACCTAGGGG 61.067 68.421 14.81 9.88 46.55 4.79
1959 2131 0.165944 GCAATTCGACGGAACCACTG 59.834 55.000 0.00 0.00 34.37 3.66
1960 2132 1.289109 CGCAATTCGACGGAACCACT 61.289 55.000 0.00 0.00 41.67 4.00
2006 2178 1.746787 GGACAACAGGGTCGTTTTGTT 59.253 47.619 0.00 0.00 38.70 2.83
2008 2180 0.666374 GGGACAACAGGGTCGTTTTG 59.334 55.000 0.00 0.00 38.70 2.44
2021 2193 0.400213 ACGAGCAATTCAGGGGACAA 59.600 50.000 0.00 0.00 0.00 3.18
2068 2240 5.689383 TGTTCAAAAACAGGAGATAGCAC 57.311 39.130 0.00 0.00 40.45 4.40
2073 2245 9.264719 GATCAAATTTGTTCAAAAACAGGAGAT 57.735 29.630 19.73 1.95 45.72 2.75
2081 2253 9.743057 ACGTATGAGATCAAATTTGTTCAAAAA 57.257 25.926 24.27 11.52 31.05 1.94
2090 2262 5.705441 ACCACACACGTATGAGATCAAATTT 59.295 36.000 0.00 0.00 0.00 1.82
2091 2263 5.245531 ACCACACACGTATGAGATCAAATT 58.754 37.500 0.00 0.00 0.00 1.82
2104 2276 1.363145 CCGTCAACAACCACACACGT 61.363 55.000 0.00 0.00 0.00 4.49
2105 2277 1.084935 TCCGTCAACAACCACACACG 61.085 55.000 0.00 0.00 0.00 4.49
2124 2305 2.591715 GTGCACAGAACCAGGCGT 60.592 61.111 13.17 0.00 0.00 5.68
2125 2306 2.281070 AGTGCACAGAACCAGGCG 60.281 61.111 21.04 0.00 0.00 5.52
2174 2355 0.475632 ATCCTGGGAAGGTGACCACA 60.476 55.000 3.63 0.00 32.33 4.17
2263 2444 3.248266 GCATCAACCAGAAATTCAGTGC 58.752 45.455 0.00 0.00 0.00 4.40
2269 2450 2.835764 AGGCATGCATCAACCAGAAATT 59.164 40.909 21.36 0.00 0.00 1.82
2289 2470 2.545526 CTGGACATGCCTAATTGCGTAG 59.454 50.000 7.54 0.00 37.63 3.51
2300 2481 4.107051 GCACGCACTGGACATGCC 62.107 66.667 0.00 0.00 40.09 4.40
2313 2494 1.923864 GTTTTGGACAAGTTTGGCACG 59.076 47.619 0.00 0.00 38.18 5.34
2323 2504 4.546829 AGAGCCTATACGTTTTGGACAA 57.453 40.909 10.37 0.00 0.00 3.18
2325 2506 5.259832 ACTAGAGCCTATACGTTTTGGAC 57.740 43.478 10.37 3.97 0.00 4.02
2326 2507 5.186409 ACAACTAGAGCCTATACGTTTTGGA 59.814 40.000 10.37 0.00 0.00 3.53
2327 2508 5.291128 CACAACTAGAGCCTATACGTTTTGG 59.709 44.000 0.00 0.00 0.00 3.28
2328 2509 5.867716 ACACAACTAGAGCCTATACGTTTTG 59.132 40.000 0.00 0.00 0.00 2.44
2329 2510 6.034161 ACACAACTAGAGCCTATACGTTTT 57.966 37.500 0.00 0.00 0.00 2.43
2330 2511 5.656213 ACACAACTAGAGCCTATACGTTT 57.344 39.130 0.00 0.00 0.00 3.60
2331 2512 5.656213 AACACAACTAGAGCCTATACGTT 57.344 39.130 0.00 0.00 0.00 3.99
2333 2514 7.031372 TGTTTAACACAACTAGAGCCTATACG 58.969 38.462 0.00 0.00 29.87 3.06
2334 2515 8.943909 ATGTTTAACACAACTAGAGCCTATAC 57.056 34.615 0.00 0.00 39.50 1.47
2336 2517 8.204836 CCTATGTTTAACACAACTAGAGCCTAT 58.795 37.037 0.00 0.00 39.50 2.57
2337 2518 7.179694 ACCTATGTTTAACACAACTAGAGCCTA 59.820 37.037 0.00 0.00 39.50 3.93
2338 2519 6.013639 ACCTATGTTTAACACAACTAGAGCCT 60.014 38.462 0.00 0.00 39.50 4.58
2339 2520 6.171213 ACCTATGTTTAACACAACTAGAGCC 58.829 40.000 0.00 0.00 39.50 4.70
2340 2521 7.668525 AACCTATGTTTAACACAACTAGAGC 57.331 36.000 0.00 0.00 39.50 4.09
2343 2524 7.871853 AGCAAACCTATGTTTAACACAACTAG 58.128 34.615 0.00 0.00 42.73 2.57
2395 2577 6.259743 ACGCGTTAACATAACTATAAACCG 57.740 37.500 5.58 0.00 0.00 4.44
2404 2586 2.340337 ACAGGGACGCGTTAACATAAC 58.660 47.619 15.53 0.00 0.00 1.89
2405 2587 2.609350 GACAGGGACGCGTTAACATAA 58.391 47.619 15.53 0.00 0.00 1.90
2408 2590 1.005867 GGACAGGGACGCGTTAACA 60.006 57.895 15.53 0.00 0.00 2.41
2409 2591 1.012486 CAGGACAGGGACGCGTTAAC 61.012 60.000 15.53 7.14 0.00 2.01
2411 2593 1.592400 CTCAGGACAGGGACGCGTTA 61.592 60.000 15.53 0.00 0.00 3.18
2412 2594 2.915659 TCAGGACAGGGACGCGTT 60.916 61.111 15.53 0.00 0.00 4.84
2414 2596 2.436087 AAACTCAGGACAGGGACGCG 62.436 60.000 3.53 3.53 0.00 6.01
2415 2597 0.951040 CAAACTCAGGACAGGGACGC 60.951 60.000 0.00 0.00 0.00 5.19
2416 2598 0.393077 ACAAACTCAGGACAGGGACG 59.607 55.000 0.00 0.00 0.00 4.79
2417 2599 2.640316 AACAAACTCAGGACAGGGAC 57.360 50.000 0.00 0.00 0.00 4.46
2459 2645 3.993081 GCCTAGATGAGATGAATTGACGG 59.007 47.826 0.00 0.00 0.00 4.79
2504 2690 8.093927 TCATGTGTTCACTACAAATACAGATCA 58.906 33.333 0.00 0.00 38.80 2.92
2508 2694 8.087982 AGTTCATGTGTTCACTACAAATACAG 57.912 34.615 4.59 0.00 38.80 2.74
2541 2765 3.057315 CCAACAAAGTGATGGCCAAGTAG 60.057 47.826 10.96 0.00 33.52 2.57
2606 2830 1.391157 GCCACAGTTGAAACCTGCCA 61.391 55.000 0.00 0.00 0.00 4.92
2622 2846 2.038952 AGCTATATTTGATGCCTCGCCA 59.961 45.455 0.00 0.00 0.00 5.69
2667 2891 0.767375 TCCTGACTGCTGCCTCTTTT 59.233 50.000 0.00 0.00 0.00 2.27
2715 2939 5.534407 TCGTAAAGCAGTTGATAGTGTGAA 58.466 37.500 0.00 0.00 0.00 3.18
2718 2942 5.539048 AGTTCGTAAAGCAGTTGATAGTGT 58.461 37.500 0.00 0.00 0.00 3.55
2748 2972 5.653330 TGTCAAATACCTGATGCACATTGAT 59.347 36.000 0.00 0.00 29.38 2.57
2773 2997 2.579207 GCATCATGAAGCATGCAAGT 57.421 45.000 21.98 4.09 44.18 3.16
2846 3076 7.255451 GGACAATGACAAGGAATTACAAGAACA 60.255 37.037 0.00 0.00 0.00 3.18
2853 3083 6.575162 AGTTGGACAATGACAAGGAATTAC 57.425 37.500 0.00 0.00 0.00 1.89
2905 3135 0.109153 AGATTGCACACCTGCTGACA 59.891 50.000 0.00 0.00 44.57 3.58
2998 3228 1.070758 TGACTGGGTCAGAGAAACTGC 59.929 52.381 1.59 0.00 45.38 4.40
2999 3229 3.397482 CTTGACTGGGTCAGAGAAACTG 58.603 50.000 1.59 0.00 43.69 3.16
3068 3298 6.821665 TCATGGTTACCAGACTAAAGCATTAC 59.178 38.462 10.74 0.00 38.80 1.89
3071 3301 5.435686 TCATGGTTACCAGACTAAAGCAT 57.564 39.130 10.74 0.00 40.81 3.79
3072 3302 4.901197 TCATGGTTACCAGACTAAAGCA 57.099 40.909 10.74 0.00 36.75 3.91
3073 3303 5.123979 CCTTTCATGGTTACCAGACTAAAGC 59.876 44.000 10.74 0.00 36.75 3.51
3074 3304 6.472887 TCCTTTCATGGTTACCAGACTAAAG 58.527 40.000 10.74 14.64 36.75 1.85
3075 3305 6.442541 TCCTTTCATGGTTACCAGACTAAA 57.557 37.500 10.74 6.64 36.75 1.85
3076 3306 6.442541 TTCCTTTCATGGTTACCAGACTAA 57.557 37.500 10.74 0.96 36.75 2.24
3100 3330 8.385898 AGACACAGAACGGAAAAATATACAAA 57.614 30.769 0.00 0.00 0.00 2.83
3134 3364 5.675684 TGTCATTAAGTCATGGCTACTGA 57.324 39.130 0.00 0.99 29.46 3.41
3135 3365 6.722301 CATTGTCATTAAGTCATGGCTACTG 58.278 40.000 0.00 0.00 29.46 2.74
3136 3366 5.297776 GCATTGTCATTAAGTCATGGCTACT 59.702 40.000 0.00 0.00 29.46 2.57
3137 3367 5.297776 AGCATTGTCATTAAGTCATGGCTAC 59.702 40.000 0.00 0.00 29.46 3.58
3138 3368 5.439721 AGCATTGTCATTAAGTCATGGCTA 58.560 37.500 0.00 0.00 29.46 3.93
3139 3369 4.275810 AGCATTGTCATTAAGTCATGGCT 58.724 39.130 0.00 0.00 29.46 4.75
3140 3370 4.644103 AGCATTGTCATTAAGTCATGGC 57.356 40.909 0.00 0.00 0.00 4.40
3151 3381 3.972133 TCCCAGATTGAAGCATTGTCAT 58.028 40.909 0.00 0.00 0.00 3.06
3158 3388 3.499338 ACACAATTCCCAGATTGAAGCA 58.501 40.909 4.76 0.00 38.93 3.91
3176 3406 5.116680 GCTCCAACGATATATACGTGAACAC 59.883 44.000 0.00 0.00 43.16 3.32
3337 3574 1.429299 CCCCCTTCACCCTTCTTCTTT 59.571 52.381 0.00 0.00 0.00 2.52
3536 3773 4.197750 AGAGTTTCTCCATTGCTGCATAG 58.802 43.478 1.84 0.00 0.00 2.23
3537 3774 4.226427 AGAGTTTCTCCATTGCTGCATA 57.774 40.909 1.84 0.00 0.00 3.14
3538 3775 3.083122 AGAGTTTCTCCATTGCTGCAT 57.917 42.857 1.84 0.00 0.00 3.96
3539 3776 2.555325 CAAGAGTTTCTCCATTGCTGCA 59.445 45.455 0.00 0.00 0.00 4.41
3540 3777 2.816087 TCAAGAGTTTCTCCATTGCTGC 59.184 45.455 0.00 0.00 0.00 5.25
3541 3778 4.615452 GCTTCAAGAGTTTCTCCATTGCTG 60.615 45.833 0.00 0.00 0.00 4.41
3542 3779 3.505293 GCTTCAAGAGTTTCTCCATTGCT 59.495 43.478 0.00 0.00 0.00 3.91
3543 3780 3.366781 GGCTTCAAGAGTTTCTCCATTGC 60.367 47.826 0.00 0.00 0.00 3.56
3544 3781 4.077822 AGGCTTCAAGAGTTTCTCCATTG 58.922 43.478 0.00 0.00 0.00 2.82
3545 3782 4.379302 AGGCTTCAAGAGTTTCTCCATT 57.621 40.909 0.00 0.00 0.00 3.16
3546 3783 4.077822 CAAGGCTTCAAGAGTTTCTCCAT 58.922 43.478 0.00 0.00 0.00 3.41
3547 3784 3.480470 CAAGGCTTCAAGAGTTTCTCCA 58.520 45.455 0.00 0.00 0.00 3.86
3548 3785 2.816672 CCAAGGCTTCAAGAGTTTCTCC 59.183 50.000 0.00 0.00 0.00 3.71
3549 3786 2.227626 GCCAAGGCTTCAAGAGTTTCTC 59.772 50.000 3.29 0.00 38.26 2.87
3550 3787 2.234143 GCCAAGGCTTCAAGAGTTTCT 58.766 47.619 3.29 0.00 38.26 2.52
3551 3788 1.956477 TGCCAAGGCTTCAAGAGTTTC 59.044 47.619 12.96 0.00 42.51 2.78
3552 3789 2.071778 TGCCAAGGCTTCAAGAGTTT 57.928 45.000 12.96 0.00 42.51 2.66
3553 3790 1.959282 CTTGCCAAGGCTTCAAGAGTT 59.041 47.619 18.85 0.00 39.48 3.01
3554 3791 1.143684 TCTTGCCAAGGCTTCAAGAGT 59.856 47.619 21.08 0.00 40.63 3.24
3555 3792 1.901591 TCTTGCCAAGGCTTCAAGAG 58.098 50.000 21.08 8.49 40.63 2.85
3556 3793 2.165167 CATCTTGCCAAGGCTTCAAGA 58.835 47.619 24.85 24.85 46.72 3.02
3557 3794 1.891150 ACATCTTGCCAAGGCTTCAAG 59.109 47.619 17.97 17.97 42.51 3.02
3558 3795 1.999648 ACATCTTGCCAAGGCTTCAA 58.000 45.000 12.96 0.00 42.51 2.69
3559 3796 2.436417 GTACATCTTGCCAAGGCTTCA 58.564 47.619 12.96 0.00 42.51 3.02
3560 3797 1.398390 CGTACATCTTGCCAAGGCTTC 59.602 52.381 12.96 0.00 42.51 3.86
3561 3798 1.453155 CGTACATCTTGCCAAGGCTT 58.547 50.000 12.96 0.00 42.51 4.35
3562 3799 1.026718 GCGTACATCTTGCCAAGGCT 61.027 55.000 12.96 0.00 42.51 4.58
3563 3800 1.305219 TGCGTACATCTTGCCAAGGC 61.305 55.000 4.30 3.61 42.35 4.35
3564 3801 1.382522 ATGCGTACATCTTGCCAAGG 58.617 50.000 4.30 0.00 0.00 3.61
3565 3802 4.818534 ATTATGCGTACATCTTGCCAAG 57.181 40.909 0.00 0.00 37.74 3.61
3566 3803 4.637977 TGAATTATGCGTACATCTTGCCAA 59.362 37.500 0.00 0.00 37.74 4.52
3567 3804 4.035091 GTGAATTATGCGTACATCTTGCCA 59.965 41.667 0.00 0.00 37.74 4.92
3568 3805 4.035091 TGTGAATTATGCGTACATCTTGCC 59.965 41.667 0.00 0.00 37.74 4.52
3569 3806 5.155509 TGTGAATTATGCGTACATCTTGC 57.844 39.130 0.00 0.00 37.74 4.01
3580 3817 6.639686 CACCTTCTGCATTATGTGAATTATGC 59.360 38.462 0.00 0.00 42.75 3.14
3584 3821 5.711506 TGTCACCTTCTGCATTATGTGAATT 59.288 36.000 9.85 0.00 34.82 2.17
3706 3943 1.527034 TTGATGCACACTCTCTTGGC 58.473 50.000 0.00 0.00 0.00 4.52
3774 4011 1.842562 CCAGATGACACCCTCCAGAAT 59.157 52.381 0.00 0.00 0.00 2.40
3785 4022 0.528924 GCTGCATTTGCCAGATGACA 59.471 50.000 0.00 0.00 41.18 3.58
3865 4102 5.522824 GGGAAGGTAAGTCGACATAATTGAC 59.477 44.000 19.50 0.00 41.60 3.18
3876 4117 4.017177 AGGAAAAAGGGAAGGTAAGTCG 57.983 45.455 0.00 0.00 0.00 4.18
3883 4124 2.688446 GCCGATTAGGAAAAAGGGAAGG 59.312 50.000 0.00 0.00 45.00 3.46
3898 4139 1.131638 TAGAGAAGCCCATGCCGATT 58.868 50.000 0.00 0.00 38.69 3.34
3902 4143 1.517242 CGAATAGAGAAGCCCATGCC 58.483 55.000 0.00 0.00 38.69 4.40
3915 4156 7.169813 TGCAAATATCAGTAACTCAGCGAATAG 59.830 37.037 0.00 0.00 0.00 1.73
3923 4164 9.109393 GGAACTTATGCAAATATCAGTAACTCA 57.891 33.333 0.00 0.00 0.00 3.41
4166 4407 2.562912 GCAACGTGGCATGGTCAG 59.437 61.111 10.88 0.00 0.00 3.51
4176 4417 1.172180 ATCCTGTGGTTGGCAACGTG 61.172 55.000 22.95 12.56 42.51 4.49
4254 4495 0.249955 AAAGCGGCCCATTTTCCATG 59.750 50.000 0.00 0.00 0.00 3.66
4405 4968 2.473816 TCTGCGACTGTTCTCTGTTTG 58.526 47.619 0.00 0.00 0.00 2.93
4453 5020 4.111375 AGAGCTACACAAGTTACATCCG 57.889 45.455 0.00 0.00 0.00 4.18
4476 5043 4.309099 TGCAAATGAGCAAGAAATCCAAC 58.691 39.130 0.00 0.00 42.46 3.77
4498 5070 8.732746 AACTACGATAAATCCACTTTAGCATT 57.267 30.769 0.00 0.00 35.84 3.56
4515 5087 5.800941 CGCTGTAAGAGAAAGAAACTACGAT 59.199 40.000 0.00 0.00 34.81 3.73
4516 5088 5.152097 CGCTGTAAGAGAAAGAAACTACGA 58.848 41.667 0.00 0.00 34.81 3.43
4517 5089 4.916249 ACGCTGTAAGAGAAAGAAACTACG 59.084 41.667 0.00 0.00 37.13 3.51
4518 5090 6.766452 AACGCTGTAAGAGAAAGAAACTAC 57.234 37.500 0.00 0.00 37.13 2.73
4537 5110 4.026062 TGCATCAGATAACACGATAAACGC 60.026 41.667 0.00 0.00 46.94 4.84
4539 5112 7.409697 ACATTGCATCAGATAACACGATAAAC 58.590 34.615 0.00 0.00 0.00 2.01
4543 5116 6.707608 ACATACATTGCATCAGATAACACGAT 59.292 34.615 0.00 0.00 0.00 3.73
4545 5118 6.291067 ACATACATTGCATCAGATAACACG 57.709 37.500 0.00 0.00 0.00 4.49
4575 5148 0.540365 CCGGGGCCTGCATATTGATT 60.540 55.000 6.91 0.00 0.00 2.57
4581 5154 1.680651 CAAAACCGGGGCCTGCATA 60.681 57.895 6.91 0.00 0.00 3.14
4589 5162 0.038343 CATGCAGTTCAAAACCGGGG 60.038 55.000 6.32 0.00 0.00 5.73
4593 5166 1.069049 AGTGCCATGCAGTTCAAAACC 59.931 47.619 0.00 0.00 39.37 3.27
4603 5176 2.754552 GGAAGTATTTCAGTGCCATGCA 59.245 45.455 0.03 0.00 34.90 3.96
4604 5177 3.019564 AGGAAGTATTTCAGTGCCATGC 58.980 45.455 0.03 0.00 34.90 4.06
4605 5178 4.264253 TCAGGAAGTATTTCAGTGCCATG 58.736 43.478 0.03 0.00 34.90 3.66
4612 5185 4.574013 GTCCAGCATCAGGAAGTATTTCAG 59.426 45.833 0.03 0.00 36.80 3.02
4615 5188 3.525199 AGGTCCAGCATCAGGAAGTATTT 59.475 43.478 0.00 0.00 36.80 1.40
4644 5217 3.731089 CCAGAAGATCAGGAGCAGAATC 58.269 50.000 0.00 0.00 0.00 2.52
4712 5288 9.877178 GAGTCATGAGAGACCTTAATTTTCTTA 57.123 33.333 0.00 0.00 39.34 2.10
4715 5291 7.106239 TGGAGTCATGAGAGACCTTAATTTTC 58.894 38.462 0.00 0.00 39.34 2.29
4823 5399 3.001330 GTCCATTCGAAATACTTGAGCCG 59.999 47.826 0.00 0.00 0.00 5.52
5023 5599 0.675633 ACCCACAGAAATTGCAGTGC 59.324 50.000 8.58 8.58 0.00 4.40
5044 5623 3.491104 CGTGGTTGTAGAGATTCTAGGGC 60.491 52.174 0.00 0.00 28.01 5.19
5051 5630 3.513912 TGTCCATCGTGGTTGTAGAGATT 59.486 43.478 4.33 0.00 39.03 2.40
5114 5693 6.810182 GCTCAAGACAAAATACATGCATTCTT 59.190 34.615 0.00 0.00 0.00 2.52
5144 5723 3.195041 TTGCTTCTCAACCTCGACG 57.805 52.632 0.00 0.00 0.00 5.12
5201 5780 2.184020 TTGATGGCTGACCTGGACGG 62.184 60.000 0.00 0.00 36.63 4.79
5226 5805 6.294010 GCATTGCACTCAATCATGATGACTAT 60.294 38.462 9.46 0.00 40.74 2.12
5229 5808 4.042398 GCATTGCACTCAATCATGATGAC 58.958 43.478 9.46 0.00 40.74 3.06
5267 5847 5.349543 GGATGCCACAAGTTCAAAAATCATC 59.650 40.000 0.00 0.00 0.00 2.92
5271 5851 4.590222 AGAGGATGCCACAAGTTCAAAAAT 59.410 37.500 0.00 0.00 0.00 1.82
5272 5852 3.960102 AGAGGATGCCACAAGTTCAAAAA 59.040 39.130 0.00 0.00 0.00 1.94
5377 5964 7.860918 ACGTTGATAGAGAGTATTACTGTGA 57.139 36.000 0.00 0.00 0.00 3.58
5382 5969 9.962783 ATTACCAACGTTGATAGAGAGTATTAC 57.037 33.333 29.35 0.00 0.00 1.89
5385 5972 8.008513 ACATTACCAACGTTGATAGAGAGTAT 57.991 34.615 29.35 3.08 0.00 2.12
5386 5973 7.121611 TGACATTACCAACGTTGATAGAGAGTA 59.878 37.037 29.35 16.83 0.00 2.59
5387 5974 6.071560 TGACATTACCAACGTTGATAGAGAGT 60.072 38.462 29.35 17.81 0.00 3.24
5388 5975 6.253727 GTGACATTACCAACGTTGATAGAGAG 59.746 42.308 29.35 12.89 0.00 3.20
5389 5976 6.097356 GTGACATTACCAACGTTGATAGAGA 58.903 40.000 29.35 2.05 0.00 3.10
5390 5977 5.867174 TGTGACATTACCAACGTTGATAGAG 59.133 40.000 29.35 14.79 0.00 2.43
5391 5978 5.785243 TGTGACATTACCAACGTTGATAGA 58.215 37.500 29.35 12.26 0.00 1.98
5392 5979 6.474819 TTGTGACATTACCAACGTTGATAG 57.525 37.500 29.35 15.08 0.00 2.08
5393 5980 6.862711 TTTGTGACATTACCAACGTTGATA 57.137 33.333 29.35 14.92 0.00 2.15
5414 6001 9.696917 CAAGCTCAACAGGTCTAATTTTAATTT 57.303 29.630 0.00 0.00 0.00 1.82
5422 6009 3.584848 ACCTCAAGCTCAACAGGTCTAAT 59.415 43.478 0.00 0.00 33.76 1.73
5435 6022 6.299805 TCAGTATTATGAACACCTCAAGCT 57.700 37.500 0.00 0.00 37.67 3.74
5451 6038 8.169977 TGCTTTCAGAACAAAGAATCAGTATT 57.830 30.769 0.00 0.00 35.67 1.89
5464 6051 5.822519 ACAAGACAGTTATGCTTTCAGAACA 59.177 36.000 5.73 0.00 44.48 3.18
5480 6067 6.329496 ACACAAACCATAACAAACAAGACAG 58.671 36.000 0.00 0.00 0.00 3.51
5483 6070 7.337184 TCTGTACACAAACCATAACAAACAAGA 59.663 33.333 0.00 0.00 0.00 3.02
5518 6105 3.308323 CGACCTTGCTTCTGCTTCTATTC 59.692 47.826 0.00 0.00 40.48 1.75
5827 6414 5.164954 AGACTATTTTCTTCTGCGTGTCTC 58.835 41.667 0.00 0.00 0.00 3.36
5833 6420 3.686726 AGCCAAGACTATTTTCTTCTGCG 59.313 43.478 0.00 0.00 36.32 5.18
5940 6527 1.887198 CACTCCACTAGACTTGTCGGT 59.113 52.381 0.00 0.00 0.00 4.69
5942 6529 2.160205 TCCACTCCACTAGACTTGTCG 58.840 52.381 0.00 0.00 0.00 4.35
6005 6592 4.927049 TCTCCCTTTTCTTGCTTGATGAT 58.073 39.130 0.00 0.00 0.00 2.45
6006 6593 4.371624 TCTCCCTTTTCTTGCTTGATGA 57.628 40.909 0.00 0.00 0.00 2.92
6007 6594 4.279169 TGTTCTCCCTTTTCTTGCTTGATG 59.721 41.667 0.00 0.00 0.00 3.07
6075 6662 0.038310 GCTTTGGAGCTGTACCCCTT 59.962 55.000 0.00 0.00 45.65 3.95
6104 6691 4.454948 TGGGACACTTCAGCAACG 57.545 55.556 0.00 0.00 0.00 4.10
6249 6863 3.446873 TGCTTCTTTGCTTCAACCTCAAA 59.553 39.130 0.00 0.00 0.00 2.69
6284 6898 4.335037 GGAGCCATCATCTTGTCTTCTTTC 59.665 45.833 0.00 0.00 0.00 2.62
6289 6903 3.009916 AGTTGGAGCCATCATCTTGTCTT 59.990 43.478 0.86 0.00 0.00 3.01
6334 6951 1.152881 CCCTTGGTAGCAGATGGGC 60.153 63.158 14.01 0.00 0.00 5.36
6403 7020 1.135199 TCGTATCGGTTCTGGTTCTGC 60.135 52.381 0.00 0.00 0.00 4.26
6417 7034 6.408858 TTTCTTCAGTTGCTTCATCGTATC 57.591 37.500 0.00 0.00 0.00 2.24
6419 7036 4.152402 GCTTTCTTCAGTTGCTTCATCGTA 59.848 41.667 0.00 0.00 0.00 3.43
6512 7129 3.202097 TGTGTCAAAGCTCATCGAACAA 58.798 40.909 0.00 0.00 0.00 2.83
6527 7144 5.530915 CAGGGACAGTTTATTTCTTGTGTCA 59.469 40.000 0.00 0.00 36.79 3.58
6533 7150 5.324409 TCATGCAGGGACAGTTTATTTCTT 58.676 37.500 0.00 0.00 0.00 2.52
6540 7157 0.403271 AGCTCATGCAGGGACAGTTT 59.597 50.000 0.00 0.00 42.74 2.66
6560 7177 1.302431 CTCAACCGGGCACATGTCA 60.302 57.895 6.32 0.00 0.00 3.58
6575 7192 1.140312 ACTTCTTTCCACAGCCCTCA 58.860 50.000 0.00 0.00 0.00 3.86
6576 7193 2.155279 GAACTTCTTTCCACAGCCCTC 58.845 52.381 0.00 0.00 0.00 4.30
6602 7219 0.318445 GCTGCAGCAGAAACTTGTGG 60.318 55.000 33.36 0.00 41.59 4.17
6624 7241 1.399727 CGTTTCGATGTGAACCTTGCC 60.400 52.381 0.00 0.00 35.97 4.52
6637 7254 0.850217 CAGTTGCTTCGTCGTTTCGA 59.150 50.000 0.00 0.00 38.08 3.71
6697 7320 1.448893 TACCCTTCAACGCGCATCC 60.449 57.895 5.73 0.00 0.00 3.51
6707 7330 3.368013 CGATAGTGCAAGTGTACCCTTCA 60.368 47.826 0.00 0.00 0.00 3.02
6854 7477 2.049433 GGACGGTCGTCTGTGTGG 60.049 66.667 20.55 0.00 44.04 4.17
6860 7483 2.979197 CTTCAGCGGACGGTCGTCT 61.979 63.158 20.55 1.16 44.04 4.18
6875 7498 4.410400 CCCTCCCACGGGCACTTC 62.410 72.222 0.00 0.00 37.41 3.01
6941 7564 1.216977 CCTGTCGCCCGTATGAACA 59.783 57.895 0.00 0.00 0.00 3.18
7005 7628 4.406648 TGTGACGGCTGAAATCTGATAT 57.593 40.909 0.00 0.00 0.00 1.63
7099 7722 0.608640 ACTTACCCCTGTCGCTTCTG 59.391 55.000 0.00 0.00 0.00 3.02
7168 7791 3.375299 GTGGTGCTTGGCTAATAGAGTTG 59.625 47.826 0.00 0.00 0.00 3.16
7171 7794 3.266510 TGTGGTGCTTGGCTAATAGAG 57.733 47.619 0.00 0.00 0.00 2.43
7180 7803 4.196372 ACCCATTGTGGTGCTTGG 57.804 55.556 0.00 0.00 37.20 3.61
7254 7878 7.080353 ACTAGCTAAATTAGTAAGGGATCCCA 58.920 38.462 32.69 10.51 32.32 4.37
7255 7879 7.455323 AGACTAGCTAAATTAGTAAGGGATCCC 59.545 40.741 24.59 24.59 31.74 3.85
7256 7880 8.308207 CAGACTAGCTAAATTAGTAAGGGATCC 58.692 40.741 1.92 1.92 31.74 3.36
7257 7881 8.308207 CCAGACTAGCTAAATTAGTAAGGGATC 58.692 40.741 1.68 0.00 31.74 3.36
7258 7882 7.256368 GCCAGACTAGCTAAATTAGTAAGGGAT 60.256 40.741 1.68 0.00 31.74 3.85
7259 7883 6.041751 GCCAGACTAGCTAAATTAGTAAGGGA 59.958 42.308 1.68 0.00 31.74 4.20
7260 7884 6.183360 TGCCAGACTAGCTAAATTAGTAAGGG 60.183 42.308 1.68 0.00 31.74 3.95
7261 7885 6.817184 TGCCAGACTAGCTAAATTAGTAAGG 58.183 40.000 1.68 0.00 31.74 2.69
7262 7886 7.493367 ACTGCCAGACTAGCTAAATTAGTAAG 58.507 38.462 0.00 2.66 31.74 2.34
7263 7887 7.419711 ACTGCCAGACTAGCTAAATTAGTAA 57.580 36.000 0.00 0.00 31.74 2.24
7264 7888 7.419711 AACTGCCAGACTAGCTAAATTAGTA 57.580 36.000 0.00 0.00 31.74 1.82
7265 7889 5.941555 ACTGCCAGACTAGCTAAATTAGT 57.058 39.130 0.00 0.00 34.19 2.24
7266 7890 7.042389 GCTAAACTGCCAGACTAGCTAAATTAG 60.042 40.741 17.08 0.00 33.68 1.73
7267 7891 6.761714 GCTAAACTGCCAGACTAGCTAAATTA 59.238 38.462 17.08 0.00 33.68 1.40
7268 7892 5.586643 GCTAAACTGCCAGACTAGCTAAATT 59.413 40.000 17.08 0.00 33.68 1.82
7307 7931 9.811655 CATTATAATGACAACGTCAATACATCC 57.188 33.333 18.92 0.00 45.96 3.51
7393 8020 2.791004 GCAGCAAAATTATCGTCCATGC 59.209 45.455 0.00 0.00 0.00 4.06
7436 8063 4.642437 GGATCAGATGGTTTCCCTTCTTTC 59.358 45.833 0.00 0.00 41.93 2.62
7471 8098 1.734117 GGCATCACCGCAGCAAAAC 60.734 57.895 0.00 0.00 0.00 2.43
7495 8122 6.458478 GCTCACAACTACAGTATCGTCATACT 60.458 42.308 0.00 0.00 45.37 2.12
7501 8128 4.022242 ACAAGCTCACAACTACAGTATCGT 60.022 41.667 0.00 0.00 0.00 3.73
7502 8129 4.486090 ACAAGCTCACAACTACAGTATCG 58.514 43.478 0.00 0.00 0.00 2.92
7588 8882 3.615709 GGGCAGCCCAACACCAAC 61.616 66.667 27.33 0.00 44.65 3.77
7684 8978 1.709147 GACGCACCAGGCAGCTATTG 61.709 60.000 3.20 0.00 45.17 1.90
7718 9012 0.247736 CAGGTTGAGGAACGGAGGAG 59.752 60.000 0.00 0.00 32.28 3.69
7731 10289 2.301346 ACTCCAAGCACTTTCAGGTTG 58.699 47.619 0.00 0.00 42.43 3.77
7769 10327 1.228003 CTTGGTACGGGGTGCACAA 60.228 57.895 20.43 0.20 0.00 3.33
7816 10375 9.982291 CTTGCATAAACGTGTAGTAAATACAAT 57.018 29.630 0.00 0.00 45.88 2.71
7836 10395 6.621316 TCATTTGTTTGATTTTGCTTGCAT 57.379 29.167 0.00 0.00 0.00 3.96
7861 10420 5.121142 CCAAATTTTGTTATGCCTTGCTCAG 59.879 40.000 8.26 0.00 0.00 3.35
7885 10444 4.039603 AGATCCCTTATTAGGCATTGGC 57.960 45.455 1.17 1.17 40.50 4.52
7889 10448 5.750228 GCCTTGAAGATCCCTTATTAGGCAT 60.750 44.000 0.00 0.00 43.05 4.40
7896 10455 2.104963 GTCCGCCTTGAAGATCCCTTAT 59.895 50.000 0.00 0.00 31.62 1.73
7900 10459 1.153147 GGTCCGCCTTGAAGATCCC 60.153 63.158 0.00 0.00 0.00 3.85
7901 10460 1.153147 GGGTCCGCCTTGAAGATCC 60.153 63.158 0.00 0.00 34.45 3.36
7902 10461 0.179070 GAGGGTCCGCCTTGAAGATC 60.179 60.000 0.00 0.00 34.45 2.75
7903 10462 0.909610 TGAGGGTCCGCCTTGAAGAT 60.910 55.000 0.00 0.00 34.45 2.40
7904 10463 1.125093 TTGAGGGTCCGCCTTGAAGA 61.125 55.000 0.00 0.00 34.45 2.87
7905 10464 0.250727 TTTGAGGGTCCGCCTTGAAG 60.251 55.000 0.00 0.00 34.45 3.02
7906 10465 0.536460 GTTTGAGGGTCCGCCTTGAA 60.536 55.000 0.00 0.00 34.45 2.69
7907 10466 1.072505 GTTTGAGGGTCCGCCTTGA 59.927 57.895 0.00 0.00 34.45 3.02
7908 10467 1.971695 GGTTTGAGGGTCCGCCTTG 60.972 63.158 0.00 0.00 34.45 3.61
7909 10468 2.434774 GGTTTGAGGGTCCGCCTT 59.565 61.111 0.00 0.00 34.45 4.35
7910 10469 4.016706 CGGTTTGAGGGTCCGCCT 62.017 66.667 0.00 0.00 37.90 5.52
7918 10477 4.038080 GTTGCGGGCGGTTTGAGG 62.038 66.667 0.00 0.00 0.00 3.86
7919 10478 2.978010 AGTTGCGGGCGGTTTGAG 60.978 61.111 0.00 0.00 0.00 3.02
7920 10479 3.283684 CAGTTGCGGGCGGTTTGA 61.284 61.111 0.00 0.00 0.00 2.69
7921 10480 3.536498 GACAGTTGCGGGCGGTTTG 62.536 63.158 0.00 0.00 0.00 2.93
7922 10481 3.284449 GACAGTTGCGGGCGGTTT 61.284 61.111 0.00 0.00 0.00 3.27
7930 10489 2.047274 ATGGTCCGGACAGTTGCG 60.047 61.111 34.40 0.00 36.09 4.85
7931 10490 2.690778 GCATGGTCCGGACAGTTGC 61.691 63.158 34.40 30.88 0.00 4.17
7932 10491 1.300971 CTGCATGGTCCGGACAGTTG 61.301 60.000 34.40 26.40 0.00 3.16
7933 10492 1.003355 CTGCATGGTCCGGACAGTT 60.003 57.895 34.40 16.40 0.00 3.16
7934 10493 1.768684 AACTGCATGGTCCGGACAGT 61.769 55.000 34.40 25.02 43.14 3.55
7935 10494 0.606401 AAACTGCATGGTCCGGACAG 60.606 55.000 34.40 24.37 0.00 3.51
7936 10495 0.888736 CAAACTGCATGGTCCGGACA 60.889 55.000 34.40 21.15 0.00 4.02
7937 10496 1.875963 CAAACTGCATGGTCCGGAC 59.124 57.895 27.04 27.04 0.00 4.79
7938 10497 1.971167 GCAAACTGCATGGTCCGGA 60.971 57.895 0.00 0.00 44.26 5.14
7939 10498 2.568090 GCAAACTGCATGGTCCGG 59.432 61.111 0.00 0.00 44.26 5.14
7948 10507 1.608093 CGCGTTGAATGGCAAACTGC 61.608 55.000 0.00 0.00 44.08 4.40
7949 10508 1.003262 CCGCGTTGAATGGCAAACTG 61.003 55.000 4.92 0.00 38.44 3.16
7950 10509 1.285641 CCGCGTTGAATGGCAAACT 59.714 52.632 4.92 0.00 38.44 2.66
7951 10510 1.732683 CCCGCGTTGAATGGCAAAC 60.733 57.895 4.92 0.00 38.44 2.93
7952 10511 2.647875 CCCGCGTTGAATGGCAAA 59.352 55.556 4.92 0.00 38.44 3.68
7953 10512 4.049640 GCCCGCGTTGAATGGCAA 62.050 61.111 15.61 0.00 43.46 4.52
7956 10515 0.250124 TATAGGCCCGCGTTGAATGG 60.250 55.000 4.92 0.00 0.00 3.16
7957 10516 1.732259 GATATAGGCCCGCGTTGAATG 59.268 52.381 4.92 0.00 0.00 2.67
7958 10517 1.346395 TGATATAGGCCCGCGTTGAAT 59.654 47.619 4.92 0.00 0.00 2.57
7959 10518 0.753867 TGATATAGGCCCGCGTTGAA 59.246 50.000 4.92 0.00 0.00 2.69
7960 10519 0.317160 CTGATATAGGCCCGCGTTGA 59.683 55.000 4.92 0.00 0.00 3.18
7961 10520 0.033504 ACTGATATAGGCCCGCGTTG 59.966 55.000 4.92 0.00 0.00 4.10
7962 10521 1.624336 TACTGATATAGGCCCGCGTT 58.376 50.000 4.92 0.00 0.00 4.84
7963 10522 1.476891 CATACTGATATAGGCCCGCGT 59.523 52.381 4.92 0.00 0.00 6.01
7964 10523 1.749063 TCATACTGATATAGGCCCGCG 59.251 52.381 0.00 0.00 0.00 6.46
7965 10524 2.761208 AGTCATACTGATATAGGCCCGC 59.239 50.000 0.00 0.00 0.00 6.13
7966 10525 5.047306 TCAAAGTCATACTGATATAGGCCCG 60.047 44.000 0.00 0.00 0.00 6.13
7967 10526 6.166982 GTCAAAGTCATACTGATATAGGCCC 58.833 44.000 0.00 0.00 0.00 5.80
7968 10527 6.759272 TGTCAAAGTCATACTGATATAGGCC 58.241 40.000 0.00 0.00 0.00 5.19
7969 10528 7.547370 GGATGTCAAAGTCATACTGATATAGGC 59.453 40.741 0.00 0.00 0.00 3.93
7970 10529 8.037758 GGGATGTCAAAGTCATACTGATATAGG 58.962 40.741 0.00 0.00 0.00 2.57
7971 10530 8.037758 GGGGATGTCAAAGTCATACTGATATAG 58.962 40.741 0.00 0.00 0.00 1.31
7972 10531 7.309805 CGGGGATGTCAAAGTCATACTGATATA 60.310 40.741 0.00 0.00 0.00 0.86
7973 10532 6.519043 CGGGGATGTCAAAGTCATACTGATAT 60.519 42.308 0.00 0.00 0.00 1.63
7974 10533 5.221441 CGGGGATGTCAAAGTCATACTGATA 60.221 44.000 0.00 0.00 0.00 2.15
7975 10534 4.443457 CGGGGATGTCAAAGTCATACTGAT 60.443 45.833 0.00 0.00 0.00 2.90
7976 10535 3.118775 CGGGGATGTCAAAGTCATACTGA 60.119 47.826 0.00 0.00 0.00 3.41
7977 10536 3.198068 CGGGGATGTCAAAGTCATACTG 58.802 50.000 0.00 0.00 0.00 2.74
7978 10537 2.170607 CCGGGGATGTCAAAGTCATACT 59.829 50.000 0.00 0.00 0.00 2.12
7979 10538 2.561569 CCGGGGATGTCAAAGTCATAC 58.438 52.381 0.00 0.00 0.00 2.39
7980 10539 1.134220 GCCGGGGATGTCAAAGTCATA 60.134 52.381 2.18 0.00 0.00 2.15
7981 10540 0.394352 GCCGGGGATGTCAAAGTCAT 60.394 55.000 2.18 0.00 0.00 3.06
7982 10541 1.002624 GCCGGGGATGTCAAAGTCA 60.003 57.895 2.18 0.00 0.00 3.41
7983 10542 1.749258 GGCCGGGGATGTCAAAGTC 60.749 63.158 2.18 0.00 0.00 3.01
7984 10543 2.355115 GGCCGGGGATGTCAAAGT 59.645 61.111 2.18 0.00 0.00 2.66
7985 10544 2.440247 GGGCCGGGGATGTCAAAG 60.440 66.667 2.18 0.00 0.00 2.77
7986 10545 3.260888 TGGGCCGGGGATGTCAAA 61.261 61.111 2.18 0.00 0.00 2.69
7987 10546 4.041762 GTGGGCCGGGGATGTCAA 62.042 66.667 2.18 0.00 0.00 3.18
7996 10555 4.614036 AGGTTTTGGGTGGGCCGG 62.614 66.667 0.00 0.00 34.97 6.13
7997 10556 2.523168 AAGGTTTTGGGTGGGCCG 60.523 61.111 0.00 0.00 34.97 6.13
7998 10557 2.214216 GGAAGGTTTTGGGTGGGCC 61.214 63.158 0.00 0.00 0.00 5.80
7999 10558 2.214216 GGGAAGGTTTTGGGTGGGC 61.214 63.158 0.00 0.00 0.00 5.36
8000 10559 0.831711 CAGGGAAGGTTTTGGGTGGG 60.832 60.000 0.00 0.00 0.00 4.61
8001 10560 0.831711 CCAGGGAAGGTTTTGGGTGG 60.832 60.000 0.00 0.00 0.00 4.61
8002 10561 0.187361 TCCAGGGAAGGTTTTGGGTG 59.813 55.000 0.00 0.00 0.00 4.61
8003 10562 0.187606 GTCCAGGGAAGGTTTTGGGT 59.812 55.000 0.00 0.00 0.00 4.51
8004 10563 0.541998 GGTCCAGGGAAGGTTTTGGG 60.542 60.000 0.00 0.00 0.00 4.12
8005 10564 0.541998 GGGTCCAGGGAAGGTTTTGG 60.542 60.000 0.00 0.00 0.00 3.28
8006 10565 0.541998 GGGGTCCAGGGAAGGTTTTG 60.542 60.000 0.00 0.00 0.00 2.44
8007 10566 1.858505 GGGGTCCAGGGAAGGTTTT 59.141 57.895 0.00 0.00 0.00 2.43
8008 10567 2.535331 CGGGGTCCAGGGAAGGTTT 61.535 63.158 0.00 0.00 0.00 3.27
8009 10568 2.933834 CGGGGTCCAGGGAAGGTT 60.934 66.667 0.00 0.00 0.00 3.50
8017 10576 2.907897 GATTGAGTCGCGGGGTCCAG 62.908 65.000 6.13 0.00 0.00 3.86
8018 10577 3.000819 ATTGAGTCGCGGGGTCCA 61.001 61.111 6.13 0.00 0.00 4.02
8019 10578 2.202892 GATTGAGTCGCGGGGTCC 60.203 66.667 6.13 0.00 0.00 4.46
8020 10579 2.202892 GGATTGAGTCGCGGGGTC 60.203 66.667 6.13 0.75 0.00 4.46
8021 10580 2.683933 AGGATTGAGTCGCGGGGT 60.684 61.111 6.13 0.00 0.00 4.95
8022 10581 2.107141 GAGGATTGAGTCGCGGGG 59.893 66.667 6.13 0.00 0.00 5.73
8023 10582 2.107141 GGAGGATTGAGTCGCGGG 59.893 66.667 6.13 0.00 0.00 6.13
8024 10583 2.107141 GGGAGGATTGAGTCGCGG 59.893 66.667 6.13 0.00 0.00 6.46
8025 10584 2.107141 GGGGAGGATTGAGTCGCG 59.893 66.667 0.00 0.00 0.00 5.87
8026 10585 2.107141 CGGGGAGGATTGAGTCGC 59.893 66.667 0.00 0.00 0.00 5.19
8027 10586 0.249398 AAACGGGGAGGATTGAGTCG 59.751 55.000 0.00 0.00 0.00 4.18
8028 10587 2.027100 AGAAAACGGGGAGGATTGAGTC 60.027 50.000 0.00 0.00 0.00 3.36
8029 10588 1.985895 AGAAAACGGGGAGGATTGAGT 59.014 47.619 0.00 0.00 0.00 3.41
8030 10589 2.237392 AGAGAAAACGGGGAGGATTGAG 59.763 50.000 0.00 0.00 0.00 3.02
8031 10590 2.236395 GAGAGAAAACGGGGAGGATTGA 59.764 50.000 0.00 0.00 0.00 2.57
8032 10591 2.633488 GAGAGAAAACGGGGAGGATTG 58.367 52.381 0.00 0.00 0.00 2.67
8033 10592 1.560146 GGAGAGAAAACGGGGAGGATT 59.440 52.381 0.00 0.00 0.00 3.01
8034 10593 1.205055 GGAGAGAAAACGGGGAGGAT 58.795 55.000 0.00 0.00 0.00 3.24
8035 10594 0.116541 AGGAGAGAAAACGGGGAGGA 59.883 55.000 0.00 0.00 0.00 3.71
8036 10595 0.984995 AAGGAGAGAAAACGGGGAGG 59.015 55.000 0.00 0.00 0.00 4.30
8037 10596 1.066071 GGAAGGAGAGAAAACGGGGAG 60.066 57.143 0.00 0.00 0.00 4.30
8038 10597 0.981943 GGAAGGAGAGAAAACGGGGA 59.018 55.000 0.00 0.00 0.00 4.81
8039 10598 0.984995 AGGAAGGAGAGAAAACGGGG 59.015 55.000 0.00 0.00 0.00 5.73
8040 10599 2.303311 AGAAGGAAGGAGAGAAAACGGG 59.697 50.000 0.00 0.00 0.00 5.28
8041 10600 3.686916 AGAAGGAAGGAGAGAAAACGG 57.313 47.619 0.00 0.00 0.00 4.44
8042 10601 5.301555 AGAAAGAAGGAAGGAGAGAAAACG 58.698 41.667 0.00 0.00 0.00 3.60
8043 10602 5.407084 CGAGAAAGAAGGAAGGAGAGAAAAC 59.593 44.000 0.00 0.00 0.00 2.43
8044 10603 5.542779 CGAGAAAGAAGGAAGGAGAGAAAA 58.457 41.667 0.00 0.00 0.00 2.29
8045 10604 4.561734 GCGAGAAAGAAGGAAGGAGAGAAA 60.562 45.833 0.00 0.00 0.00 2.52
8046 10605 3.056465 GCGAGAAAGAAGGAAGGAGAGAA 60.056 47.826 0.00 0.00 0.00 2.87
8047 10606 2.494073 GCGAGAAAGAAGGAAGGAGAGA 59.506 50.000 0.00 0.00 0.00 3.10
8048 10607 2.495669 AGCGAGAAAGAAGGAAGGAGAG 59.504 50.000 0.00 0.00 0.00 3.20
8049 10608 2.530701 AGCGAGAAAGAAGGAAGGAGA 58.469 47.619 0.00 0.00 0.00 3.71
8050 10609 2.999355 CAAGCGAGAAAGAAGGAAGGAG 59.001 50.000 0.00 0.00 0.00 3.69
8051 10610 2.872038 GCAAGCGAGAAAGAAGGAAGGA 60.872 50.000 0.00 0.00 0.00 3.36
8052 10611 1.466558 GCAAGCGAGAAAGAAGGAAGG 59.533 52.381 0.00 0.00 0.00 3.46
8053 10612 1.466558 GGCAAGCGAGAAAGAAGGAAG 59.533 52.381 0.00 0.00 0.00 3.46
8054 10613 1.523758 GGCAAGCGAGAAAGAAGGAA 58.476 50.000 0.00 0.00 0.00 3.36
8055 10614 3.233355 GGCAAGCGAGAAAGAAGGA 57.767 52.632 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.