Multiple sequence alignment - TraesCS3B01G447000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G447000 chr3B 100.000 6743 0 0 1 6743 686335917 686342659 0.000000e+00 12453.0
1 TraesCS3B01G447000 chr3B 84.062 320 37 7 1 319 520455240 520455546 5.110000e-76 296.0
2 TraesCS3B01G447000 chr3B 94.444 54 1 2 2211 2264 815456118 815456169 1.560000e-11 82.4
3 TraesCS3B01G447000 chr3D 94.221 4257 185 34 903 5138 520713919 520718135 0.000000e+00 6442.0
4 TraesCS3B01G447000 chr3D 85.332 1534 87 49 5285 6740 520718243 520719716 0.000000e+00 1459.0
5 TraesCS3B01G447000 chr3D 88.922 334 15 10 1 327 520713588 520713906 6.340000e-105 392.0
6 TraesCS3B01G447000 chr3A 95.365 3711 131 22 903 4585 656100215 656103912 0.000000e+00 5862.0
7 TraesCS3B01G447000 chr3A 82.679 1553 92 74 5285 6740 656104621 656106093 0.000000e+00 1214.0
8 TraesCS3B01G447000 chr3A 89.399 566 37 13 4522 5086 656103913 656104456 0.000000e+00 691.0
9 TraesCS3B01G447000 chr7B 86.917 986 85 24 1241 2208 624719729 624718770 0.000000e+00 1066.0
10 TraesCS3B01G447000 chr7B 87.653 899 75 15 2309 3194 624718706 624717831 0.000000e+00 1013.0
11 TraesCS3B01G447000 chr7B 92.377 223 17 0 1009 1231 624722960 624722738 1.090000e-82 318.0
12 TraesCS3B01G447000 chr7B 93.939 198 12 0 3190 3387 624712207 624712010 3.950000e-77 300.0
13 TraesCS3B01G447000 chr7B 94.792 96 5 0 3421 3516 624711327 624711232 4.210000e-32 150.0
14 TraesCS3B01G447000 chr2B 95.985 523 19 2 325 845 366027321 366026799 0.000000e+00 848.0
15 TraesCS3B01G447000 chr2B 94.545 55 1 2 2210 2263 136176052 136176105 4.330000e-12 84.2
16 TraesCS3B01G447000 chrUn 95.220 523 23 2 321 841 50866132 50866654 0.000000e+00 826.0
17 TraesCS3B01G447000 chrUn 95.220 523 23 2 321 841 286938445 286938967 0.000000e+00 826.0
18 TraesCS3B01G447000 chr4A 95.712 513 22 0 329 841 714256962 714256450 0.000000e+00 826.0
19 TraesCS3B01G447000 chr2D 91.522 519 42 2 328 846 525723662 525723146 0.000000e+00 713.0
20 TraesCS3B01G447000 chr2A 89.675 523 52 2 321 841 43128015 43128537 0.000000e+00 665.0
21 TraesCS3B01G447000 chr2A 89.017 519 57 0 328 846 759580244 759580762 1.590000e-180 643.0
22 TraesCS3B01G447000 chr2A 94.545 55 1 2 2210 2263 84959106 84959159 4.330000e-12 84.2
23 TraesCS3B01G447000 chr2A 94.545 55 1 2 2210 2263 84974327 84974380 4.330000e-12 84.2
24 TraesCS3B01G447000 chr4D 89.595 519 52 2 325 841 300264530 300264012 0.000000e+00 658.0
25 TraesCS3B01G447000 chr4D 89.017 519 56 1 329 846 383769221 383769739 5.700000e-180 641.0
26 TraesCS3B01G447000 chr4D 92.683 164 10 1 6447 6610 463693104 463693265 1.130000e-57 235.0
27 TraesCS3B01G447000 chr4D 94.340 53 1 2 2210 2261 139045066 139045015 5.610000e-11 80.5
28 TraesCS3B01G447000 chr7A 86.585 328 27 8 4243 4554 657423728 657423402 5.010000e-91 346.0
29 TraesCS3B01G447000 chr7A 84.790 309 42 3 5151 5456 657422746 657422440 8.500000e-79 305.0
30 TraesCS3B01G447000 chr7A 82.090 134 6 6 4117 4249 657423928 657423812 1.550000e-16 99.0
31 TraesCS3B01G447000 chr7D 93.069 202 5 2 6447 6648 549768596 549768788 3.080000e-73 287.0
32 TraesCS3B01G447000 chr6D 91.558 154 4 4 6495 6648 469343766 469343622 3.190000e-48 204.0
33 TraesCS3B01G447000 chr5D 97.917 48 1 0 2215 2262 458811245 458811292 4.330000e-12 84.2
34 TraesCS3B01G447000 chr5B 96.000 50 2 0 2218 2267 27821529 27821578 1.560000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G447000 chr3B 686335917 686342659 6742 False 12453.000000 12453 100.000000 1 6743 1 chr3B.!!$F2 6742
1 TraesCS3B01G447000 chr3D 520713588 520719716 6128 False 2764.333333 6442 89.491667 1 6740 3 chr3D.!!$F1 6739
2 TraesCS3B01G447000 chr3A 656100215 656106093 5878 False 2589.000000 5862 89.147667 903 6740 3 chr3A.!!$F1 5837
3 TraesCS3B01G447000 chr7B 624717831 624722960 5129 True 799.000000 1066 88.982333 1009 3194 3 chr7B.!!$R2 2185
4 TraesCS3B01G447000 chr7B 624711232 624712207 975 True 225.000000 300 94.365500 3190 3516 2 chr7B.!!$R1 326
5 TraesCS3B01G447000 chr2B 366026799 366027321 522 True 848.000000 848 95.985000 325 845 1 chr2B.!!$R1 520
6 TraesCS3B01G447000 chrUn 50866132 50866654 522 False 826.000000 826 95.220000 321 841 1 chrUn.!!$F1 520
7 TraesCS3B01G447000 chrUn 286938445 286938967 522 False 826.000000 826 95.220000 321 841 1 chrUn.!!$F2 520
8 TraesCS3B01G447000 chr4A 714256450 714256962 512 True 826.000000 826 95.712000 329 841 1 chr4A.!!$R1 512
9 TraesCS3B01G447000 chr2D 525723146 525723662 516 True 713.000000 713 91.522000 328 846 1 chr2D.!!$R1 518
10 TraesCS3B01G447000 chr2A 43128015 43128537 522 False 665.000000 665 89.675000 321 841 1 chr2A.!!$F1 520
11 TraesCS3B01G447000 chr2A 759580244 759580762 518 False 643.000000 643 89.017000 328 846 1 chr2A.!!$F4 518
12 TraesCS3B01G447000 chr4D 300264012 300264530 518 True 658.000000 658 89.595000 325 841 1 chr4D.!!$R2 516
13 TraesCS3B01G447000 chr4D 383769221 383769739 518 False 641.000000 641 89.017000 329 846 1 chr4D.!!$F1 517
14 TraesCS3B01G447000 chr7A 657422440 657423928 1488 True 250.000000 346 84.488333 4117 5456 3 chr7A.!!$R1 1339

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 219 0.324368 AGTGGTCTAGTCCATGGCGA 60.324 55.000 12.01 0.00 39.81 5.54 F
216 224 0.390492 TCTAGTCCATGGCGATGCTG 59.610 55.000 6.96 0.00 0.00 4.41 F
326 334 0.744414 GCCTCGCAGGATTAGCAACA 60.744 55.000 6.40 0.00 37.67 3.33 F
1547 4577 0.179124 GCGTCTTCTACTGCTGGGAG 60.179 60.000 0.00 0.00 0.00 4.30 F
2875 5927 1.965643 ACTTTGCAAGGCATGTCATGT 59.034 42.857 14.26 0.00 38.76 3.21 F
4053 7758 0.307760 GTTCAAGGTCACAGCCGTTG 59.692 55.000 0.00 0.00 0.00 4.10 F
5090 8986 0.031314 ATCATAGTCAGCAGCGACGG 59.969 55.000 10.45 6.24 40.98 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1212 1229 0.731994 GTACCGACGAGGAAGGAGAC 59.268 60.000 8.56 0.00 45.00 3.36 R
1425 4455 2.915659 AAGACCGCGTGGAGACCA 60.916 61.111 24.59 0.00 39.21 4.02 R
2306 5347 0.991146 TGCATGTGGGAGGCTTAAGA 59.009 50.000 6.67 0.00 30.62 2.10 R
3278 6333 1.035932 CCCCATCTGGAAGCTGCAAG 61.036 60.000 1.02 0.00 37.39 4.01 R
4505 8314 1.099879 GGTCATGAGGCATGTGGAGC 61.100 60.000 0.00 0.00 41.98 4.70 R
5154 9051 0.033796 AGGAACCATGCACCATGAGG 60.034 55.000 6.77 0.00 43.81 3.86 R
6236 10335 0.103208 AGTTTCCGCCTCGATGCTAG 59.897 55.000 11.00 2.51 0.00 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.040043 CTCCCTGCCTCCTCCCAT 60.040 66.667 0.00 0.00 0.00 4.00
26 27 0.563173 CCTCCTCCCATCCTACTCCA 59.437 60.000 0.00 0.00 0.00 3.86
30 31 0.755686 CTCCCATCCTACTCCAGCAC 59.244 60.000 0.00 0.00 0.00 4.40
71 72 4.740822 AGGCCACCCCAACATCGC 62.741 66.667 5.01 0.00 35.39 4.58
90 91 1.738099 GTTGCGCATCCTCGTCAGT 60.738 57.895 12.75 0.00 0.00 3.41
94 95 0.807667 GCGCATCCTCGTCAGTGAAT 60.808 55.000 0.30 0.00 0.00 2.57
96 97 1.293924 GCATCCTCGTCAGTGAATGG 58.706 55.000 0.00 0.00 0.00 3.16
100 101 1.296392 CTCGTCAGTGAATGGGCCA 59.704 57.895 9.61 9.61 0.00 5.36
206 214 4.799715 AGCTAGTAGTGGTCTAGTCCAT 57.200 45.455 12.01 4.48 39.81 3.41
208 216 3.570550 GCTAGTAGTGGTCTAGTCCATGG 59.429 52.174 12.01 4.97 39.81 3.66
209 217 2.389715 AGTAGTGGTCTAGTCCATGGC 58.610 52.381 12.01 2.00 39.81 4.40
210 218 1.067212 GTAGTGGTCTAGTCCATGGCG 59.933 57.143 12.01 0.00 39.81 5.69
211 219 0.324368 AGTGGTCTAGTCCATGGCGA 60.324 55.000 12.01 0.00 39.81 5.54
212 220 0.753262 GTGGTCTAGTCCATGGCGAT 59.247 55.000 12.01 0.00 39.81 4.58
213 221 0.752658 TGGTCTAGTCCATGGCGATG 59.247 55.000 6.96 1.01 31.96 3.84
214 222 0.601311 GGTCTAGTCCATGGCGATGC 60.601 60.000 6.96 0.00 0.00 3.91
215 223 0.390860 GTCTAGTCCATGGCGATGCT 59.609 55.000 6.96 2.55 0.00 3.79
216 224 0.390492 TCTAGTCCATGGCGATGCTG 59.610 55.000 6.96 0.00 0.00 4.41
227 235 1.363744 GCGATGCTGCCACTATATCC 58.636 55.000 0.00 0.00 0.00 2.59
228 236 1.066573 GCGATGCTGCCACTATATCCT 60.067 52.381 0.00 0.00 0.00 3.24
229 237 2.886081 CGATGCTGCCACTATATCCTC 58.114 52.381 0.00 0.00 0.00 3.71
230 238 2.232208 CGATGCTGCCACTATATCCTCA 59.768 50.000 0.00 0.00 0.00 3.86
231 239 3.118847 CGATGCTGCCACTATATCCTCAT 60.119 47.826 0.00 0.00 0.00 2.90
232 240 3.969287 TGCTGCCACTATATCCTCATC 57.031 47.619 0.00 0.00 0.00 2.92
233 241 2.568956 TGCTGCCACTATATCCTCATCC 59.431 50.000 0.00 0.00 0.00 3.51
234 242 2.836981 GCTGCCACTATATCCTCATCCT 59.163 50.000 0.00 0.00 0.00 3.24
235 243 3.262915 GCTGCCACTATATCCTCATCCTT 59.737 47.826 0.00 0.00 0.00 3.36
305 313 3.350377 CGATCTCCTCGCCTCCTC 58.650 66.667 0.00 0.00 41.14 3.71
318 326 4.841617 TCCTCGGCCTCGCAGGAT 62.842 66.667 0.00 0.00 37.67 3.24
319 327 3.854669 CCTCGGCCTCGCAGGATT 61.855 66.667 0.00 0.00 37.67 3.01
320 328 2.498941 CCTCGGCCTCGCAGGATTA 61.499 63.158 0.00 0.00 37.67 1.75
321 329 1.006805 CTCGGCCTCGCAGGATTAG 60.007 63.158 0.00 0.00 37.67 1.73
322 330 2.663188 CGGCCTCGCAGGATTAGC 60.663 66.667 0.00 0.00 37.67 3.09
323 331 2.505982 GGCCTCGCAGGATTAGCA 59.494 61.111 0.00 0.00 37.67 3.49
324 332 1.153168 GGCCTCGCAGGATTAGCAA 60.153 57.895 0.00 0.00 37.67 3.91
325 333 1.440145 GGCCTCGCAGGATTAGCAAC 61.440 60.000 0.00 0.00 37.67 4.17
326 334 0.744414 GCCTCGCAGGATTAGCAACA 60.744 55.000 6.40 0.00 37.67 3.33
487 497 4.689612 TTGCTTCCCTACACTCATATCC 57.310 45.455 0.00 0.00 0.00 2.59
583 593 1.559219 TCCATTGATGTCGGACACCAT 59.441 47.619 13.92 2.94 0.00 3.55
675 686 0.883833 CGCATGGGCTTCAAGACTTT 59.116 50.000 0.00 0.00 38.10 2.66
728 739 1.799157 ATGCCCCCAAGTAGTTGCCA 61.799 55.000 4.65 0.14 31.64 4.92
841 852 1.278985 AGGAATCCAGCGATGAACACA 59.721 47.619 0.06 0.00 0.00 3.72
846 857 1.229975 CCAGCGATGAACACACTGCA 61.230 55.000 0.06 0.00 0.00 4.41
847 858 0.800631 CAGCGATGAACACACTGCAT 59.199 50.000 0.00 0.00 0.00 3.96
848 859 1.081892 AGCGATGAACACACTGCATC 58.918 50.000 0.00 0.00 36.07 3.91
849 860 1.081892 GCGATGAACACACTGCATCT 58.918 50.000 0.00 0.00 37.00 2.90
850 861 1.466167 GCGATGAACACACTGCATCTT 59.534 47.619 0.00 0.00 37.00 2.40
851 862 2.475187 GCGATGAACACACTGCATCTTC 60.475 50.000 0.00 0.00 37.00 2.87
852 863 2.738314 CGATGAACACACTGCATCTTCA 59.262 45.455 0.00 0.00 37.00 3.02
853 864 3.424039 CGATGAACACACTGCATCTTCAC 60.424 47.826 0.00 0.00 37.00 3.18
854 865 2.221169 TGAACACACTGCATCTTCACC 58.779 47.619 0.00 0.00 0.00 4.02
855 866 2.221169 GAACACACTGCATCTTCACCA 58.779 47.619 0.00 0.00 0.00 4.17
856 867 1.888215 ACACACTGCATCTTCACCAG 58.112 50.000 0.00 0.00 0.00 4.00
857 868 1.417517 ACACACTGCATCTTCACCAGA 59.582 47.619 0.00 0.00 35.33 3.86
858 869 2.158769 ACACACTGCATCTTCACCAGAA 60.159 45.455 0.00 0.00 34.16 3.02
859 870 3.079578 CACACTGCATCTTCACCAGAAT 58.920 45.455 0.00 0.00 34.16 2.40
860 871 3.079578 ACACTGCATCTTCACCAGAATG 58.920 45.455 0.00 0.00 34.16 2.67
861 872 3.079578 CACTGCATCTTCACCAGAATGT 58.920 45.455 0.00 0.00 34.16 2.71
862 873 3.079578 ACTGCATCTTCACCAGAATGTG 58.920 45.455 0.00 0.00 34.16 3.21
863 874 1.814394 TGCATCTTCACCAGAATGTGC 59.186 47.619 0.00 0.00 41.01 4.57
864 875 2.089980 GCATCTTCACCAGAATGTGCT 58.910 47.619 0.00 0.00 39.22 4.40
865 876 2.490903 GCATCTTCACCAGAATGTGCTT 59.509 45.455 0.00 0.00 39.22 3.91
866 877 3.427233 GCATCTTCACCAGAATGTGCTTC 60.427 47.826 0.00 0.00 39.22 3.86
867 878 2.783135 TCTTCACCAGAATGTGCTTCC 58.217 47.619 0.00 0.00 36.17 3.46
868 879 2.106338 TCTTCACCAGAATGTGCTTCCA 59.894 45.455 0.00 0.00 36.17 3.53
869 880 2.885135 TCACCAGAATGTGCTTCCAT 57.115 45.000 0.00 0.00 36.17 3.41
870 881 3.998913 TCACCAGAATGTGCTTCCATA 57.001 42.857 0.00 0.00 36.17 2.74
871 882 4.508551 TCACCAGAATGTGCTTCCATAT 57.491 40.909 0.00 0.00 36.17 1.78
872 883 4.858850 TCACCAGAATGTGCTTCCATATT 58.141 39.130 0.00 0.00 35.76 1.28
873 884 4.883585 TCACCAGAATGTGCTTCCATATTC 59.116 41.667 5.39 5.39 44.93 1.75
879 890 6.690194 GAATGTGCTTCCATATTCTGTCTT 57.310 37.500 6.08 0.00 42.74 3.01
880 891 7.093322 GAATGTGCTTCCATATTCTGTCTTT 57.907 36.000 6.08 0.00 42.74 2.52
881 892 6.690194 ATGTGCTTCCATATTCTGTCTTTC 57.310 37.500 0.00 0.00 0.00 2.62
882 893 5.559770 TGTGCTTCCATATTCTGTCTTTCA 58.440 37.500 0.00 0.00 0.00 2.69
883 894 5.645067 TGTGCTTCCATATTCTGTCTTTCAG 59.355 40.000 0.00 0.00 44.85 3.02
925 936 2.765807 CCTCCTCGGCCCATCACT 60.766 66.667 0.00 0.00 0.00 3.41
928 939 1.306141 TCCTCGGCCCATCACTCTT 60.306 57.895 0.00 0.00 0.00 2.85
930 941 0.745845 CCTCGGCCCATCACTCTTTG 60.746 60.000 0.00 0.00 0.00 2.77
931 942 0.745845 CTCGGCCCATCACTCTTTGG 60.746 60.000 0.00 0.00 0.00 3.28
1025 1042 0.849417 AGCTGATCCCTTCCCCAATC 59.151 55.000 0.00 0.00 0.00 2.67
1052 1069 2.210116 GCTCGAAAAATGGCGGAGATA 58.790 47.619 0.00 0.00 0.00 1.98
1263 4280 3.181439 CCTCCCCAAATCTCCATAGTTCC 60.181 52.174 0.00 0.00 0.00 3.62
1298 4328 6.178324 TCTCTTCTCTTCGTGTAACCATCTA 58.822 40.000 0.00 0.00 0.00 1.98
1425 4455 2.456840 CCTCCCTCCTTCCCCTGT 59.543 66.667 0.00 0.00 0.00 4.00
1547 4577 0.179124 GCGTCTTCTACTGCTGGGAG 60.179 60.000 0.00 0.00 0.00 4.30
1729 4765 3.947834 GGATGGGATGAAGGTTTACACTG 59.052 47.826 0.00 0.00 0.00 3.66
1842 4881 2.297597 CGAGGCTCTGTCCCTTATTAGG 59.702 54.545 13.50 0.00 41.60 2.69
2092 5132 6.912082 TGTCCTGTGATGTGATAAATTGTTG 58.088 36.000 0.00 0.00 0.00 3.33
2095 5135 7.538678 GTCCTGTGATGTGATAAATTGTTGAAC 59.461 37.037 0.00 0.00 0.00 3.18
2114 5154 9.037737 TGTTGAACTAAAGTACAATCACAGTAC 57.962 33.333 0.00 0.00 41.59 2.73
2227 5268 4.476113 TGTAGTTAGCTAGTACTCCCTCCA 59.524 45.833 0.00 0.00 34.35 3.86
2268 5309 8.550376 TCGTGGTTTTAGTTCAAATTAGTACAC 58.450 33.333 0.00 0.00 0.00 2.90
2282 5323 8.765219 CAAATTAGTACACGCTATTATTGCTCT 58.235 33.333 0.00 0.00 0.00 4.09
2306 5347 9.609346 TCTTGCTGTTAGAAACTTTACTTTACT 57.391 29.630 0.00 0.00 0.00 2.24
2345 5386 4.837860 TGCAGGGAGTTCAAAAATATTGGT 59.162 37.500 0.00 0.00 0.00 3.67
2399 5440 2.030946 GCGACCAGTTGCTGATATCAAC 59.969 50.000 6.90 2.74 42.92 3.18
2652 5703 3.515630 TCTAGTCTTGCTCATTGCTTCG 58.484 45.455 0.00 0.00 43.37 3.79
2830 5882 9.042008 GTGTATGTTTATTTAGATCACATCCGT 57.958 33.333 0.00 0.00 30.70 4.69
2875 5927 1.965643 ACTTTGCAAGGCATGTCATGT 59.034 42.857 14.26 0.00 38.76 3.21
2877 5929 3.573538 ACTTTGCAAGGCATGTCATGTTA 59.426 39.130 14.26 0.00 38.76 2.41
2878 5930 4.221262 ACTTTGCAAGGCATGTCATGTTAT 59.779 37.500 14.26 0.00 38.76 1.89
2879 5931 3.786516 TGCAAGGCATGTCATGTTATG 57.213 42.857 14.26 10.95 31.71 1.90
2991 6046 3.005155 ACTTTTCATCTGCCAAACTGCTC 59.995 43.478 0.00 0.00 0.00 4.26
3147 6202 4.753610 CCAAGCATACACAGACATAGGATG 59.246 45.833 0.00 0.00 0.00 3.51
3650 7355 6.037172 GTCTAAAACCGAACTATCATGCACAT 59.963 38.462 0.00 0.00 0.00 3.21
3698 7403 3.637769 AGTTAGTGAAAAGGGGTTTGCA 58.362 40.909 0.00 0.00 0.00 4.08
3776 7481 6.922957 ACATTTTGTTATGACAGCACGATTTT 59.077 30.769 0.00 0.00 37.04 1.82
3905 7610 5.335113 CCAAATCATCGGCATTGTAGTATGG 60.335 44.000 0.00 0.00 0.00 2.74
4053 7758 0.307760 GTTCAAGGTCACAGCCGTTG 59.692 55.000 0.00 0.00 0.00 4.10
4077 7783 5.815740 GTGAGTTCAGACACTTAGTTTTGGA 59.184 40.000 0.00 0.00 34.65 3.53
4080 7786 7.656137 TGAGTTCAGACACTTAGTTTTGGATAC 59.344 37.037 0.00 0.00 0.00 2.24
4134 7843 5.570234 ACAGGAGTTATCTTCGAAGACTC 57.430 43.478 29.24 27.30 37.98 3.36
4135 7844 5.258051 ACAGGAGTTATCTTCGAAGACTCT 58.742 41.667 29.59 25.38 37.98 3.24
4136 7845 5.712917 ACAGGAGTTATCTTCGAAGACTCTT 59.287 40.000 29.59 24.45 37.98 2.85
4418 8218 3.196469 CCTCTACCACTCTTGCTGAATGA 59.804 47.826 0.00 0.00 0.00 2.57
4442 8246 7.654923 TGAATAGTTCATGATCATCTGTAGCAC 59.345 37.037 4.86 0.00 34.08 4.40
4449 8254 6.322201 TCATGATCATCTGTAGCACTACTTCA 59.678 38.462 4.86 3.95 37.00 3.02
4452 8257 7.559486 TGATCATCTGTAGCACTACTTCATTT 58.441 34.615 9.12 0.00 37.00 2.32
4453 8258 8.695456 TGATCATCTGTAGCACTACTTCATTTA 58.305 33.333 9.12 0.00 37.00 1.40
4474 8283 9.139174 CATTTATTTTCCGCTACTGTTTTTGAT 57.861 29.630 0.00 0.00 0.00 2.57
4505 8314 5.814764 AGCAGCAGAATATTCAGACAAAG 57.185 39.130 17.56 2.33 0.00 2.77
4544 8360 2.283298 CCTGAACATTCATGGAGTCCG 58.717 52.381 4.30 0.00 36.46 4.79
4620 8500 7.074653 AGTTCATAGTGAGGTCAGGTTTTTA 57.925 36.000 0.00 0.00 0.00 1.52
4621 8501 7.690256 AGTTCATAGTGAGGTCAGGTTTTTAT 58.310 34.615 0.00 0.00 0.00 1.40
4756 8640 6.365789 GCACACATTTTATTGCACATGTTACT 59.634 34.615 0.00 0.00 34.97 2.24
4762 8646 5.895636 TTATTGCACATGTTACTTGGAGG 57.104 39.130 0.00 0.00 0.00 4.30
4763 8647 2.198827 TGCACATGTTACTTGGAGGG 57.801 50.000 0.00 0.00 0.00 4.30
4764 8648 1.702401 TGCACATGTTACTTGGAGGGA 59.298 47.619 0.00 0.00 0.00 4.20
4765 8649 2.084546 GCACATGTTACTTGGAGGGAC 58.915 52.381 0.00 0.00 0.00 4.46
4766 8650 2.552155 GCACATGTTACTTGGAGGGACA 60.552 50.000 0.00 0.00 0.00 4.02
4767 8651 3.338249 CACATGTTACTTGGAGGGACAG 58.662 50.000 0.00 0.00 0.00 3.51
4899 8786 3.768632 GTGGAGCACTACTTCGCG 58.231 61.111 0.00 0.00 0.00 5.87
4922 8809 6.700081 GCGATTTACATGGTCAGTATTCACTA 59.300 38.462 0.00 0.00 32.21 2.74
4954 8841 8.747538 AGTCCTCACTTTAAGTTTACAATTGT 57.252 30.769 16.68 16.68 0.00 2.71
4955 8842 8.621286 AGTCCTCACTTTAAGTTTACAATTGTG 58.379 33.333 21.42 3.37 0.00 3.33
4961 8848 9.581099 CACTTTAAGTTTACAATTGTGAGGTTT 57.419 29.630 21.42 10.88 0.00 3.27
4963 8850 8.934507 TTTAAGTTTACAATTGTGAGGTTTGG 57.065 30.769 21.42 0.00 0.00 3.28
4964 8851 6.538945 AAGTTTACAATTGTGAGGTTTGGT 57.461 33.333 21.42 0.00 0.00 3.67
4965 8855 7.648039 AAGTTTACAATTGTGAGGTTTGGTA 57.352 32.000 21.42 0.00 0.00 3.25
4966 8856 7.034685 AGTTTACAATTGTGAGGTTTGGTAC 57.965 36.000 21.42 5.50 0.00 3.34
4969 8859 7.648039 TTACAATTGTGAGGTTTGGTACTTT 57.352 32.000 21.42 0.00 0.00 2.66
4970 8860 6.144078 ACAATTGTGAGGTTTGGTACTTTC 57.856 37.500 11.07 0.00 0.00 2.62
4985 8875 8.472007 TTGGTACTTTCAATTGTTTGTCCTAT 57.528 30.769 5.13 0.00 34.32 2.57
4987 8877 9.575868 TGGTACTTTCAATTGTTTGTCCTATAA 57.424 29.630 5.13 0.00 34.32 0.98
5020 8910 5.564550 AGAAAACTAAGTCAGCATCATGGT 58.435 37.500 0.00 0.00 0.00 3.55
5026 8916 6.109359 ACTAAGTCAGCATCATGGTACTTTC 58.891 40.000 13.41 0.00 30.52 2.62
5027 8917 3.525537 AGTCAGCATCATGGTACTTTCG 58.474 45.455 0.00 0.00 0.00 3.46
5028 8918 3.195610 AGTCAGCATCATGGTACTTTCGA 59.804 43.478 0.00 0.00 0.00 3.71
5034 8924 5.237996 AGCATCATGGTACTTTCGAATCATG 59.762 40.000 0.00 8.74 34.89 3.07
5052 8942 2.163818 TGTGTCTTCAACCGTGGATC 57.836 50.000 0.00 0.00 0.00 3.36
5086 8982 2.428888 TAGCATCATAGTCAGCAGCG 57.571 50.000 0.00 0.00 0.00 5.18
5087 8983 0.749049 AGCATCATAGTCAGCAGCGA 59.251 50.000 0.00 0.00 0.00 4.93
5088 8984 0.857935 GCATCATAGTCAGCAGCGAC 59.142 55.000 8.75 8.75 36.08 5.19
5089 8985 1.126890 CATCATAGTCAGCAGCGACG 58.873 55.000 10.45 0.00 40.98 5.12
5090 8986 0.031314 ATCATAGTCAGCAGCGACGG 59.969 55.000 10.45 6.24 40.98 4.79
5091 8987 2.105128 ATAGTCAGCAGCGACGGC 59.895 61.111 10.45 0.00 40.98 5.68
5092 8988 3.758088 ATAGTCAGCAGCGACGGCG 62.758 63.158 6.12 6.12 46.35 6.46
5126 9023 5.065218 CCCTCTTATGTGAGTTGTGTAATGC 59.935 44.000 0.00 0.00 32.50 3.56
5147 9044 1.993369 GCATGAAAGCCCTACACGCC 61.993 60.000 0.00 0.00 0.00 5.68
5149 9046 0.392998 ATGAAAGCCCTACACGCCAG 60.393 55.000 0.00 0.00 0.00 4.85
5154 9051 1.449070 GCCCTACACGCCAGTAACC 60.449 63.158 0.00 0.00 0.00 2.85
5156 9053 1.262640 CCCTACACGCCAGTAACCCT 61.263 60.000 0.00 0.00 0.00 4.34
5161 9058 0.744414 CACGCCAGTAACCCTCATGG 60.744 60.000 0.00 0.00 41.37 3.66
5191 9130 2.019984 CCTTCCATGCTAGGACTTTGC 58.980 52.381 5.62 0.00 37.42 3.68
5199 9138 2.302733 TGCTAGGACTTTGCATCACTCA 59.697 45.455 0.00 0.00 0.00 3.41
5214 9153 3.501950 TCACTCATTCTGTCATTCGACG 58.498 45.455 0.00 0.00 45.80 5.12
5216 9155 1.590238 CTCATTCTGTCATTCGACGGC 59.410 52.381 0.00 0.00 46.51 5.68
5235 9174 1.671328 GCTCCGCCTTAGGAAAATGTC 59.329 52.381 0.69 0.00 40.25 3.06
5238 9177 4.372656 CTCCGCCTTAGGAAAATGTCTAG 58.627 47.826 0.69 0.00 40.25 2.43
5265 9210 3.444916 ACGCAGTTGATCTAACCATACG 58.555 45.455 0.00 2.24 37.78 3.06
5283 9228 2.787723 CGTGGAGCGTTATTGAAGTG 57.212 50.000 0.00 0.00 35.54 3.16
5299 9257 0.607489 AGTGCAAGCTGCCCTGTAAG 60.607 55.000 0.00 0.00 44.23 2.34
5427 9385 1.668419 CCAAATACTCGGCCTTCCTG 58.332 55.000 0.00 0.00 0.00 3.86
5463 9424 0.382515 CGACGACTTCCTCCTGATCC 59.617 60.000 0.00 0.00 0.00 3.36
5464 9425 1.475403 GACGACTTCCTCCTGATCCA 58.525 55.000 0.00 0.00 0.00 3.41
5465 9426 2.035632 GACGACTTCCTCCTGATCCAT 58.964 52.381 0.00 0.00 0.00 3.41
5466 9427 2.035321 GACGACTTCCTCCTGATCCATC 59.965 54.545 0.00 0.00 0.00 3.51
5467 9428 1.342819 CGACTTCCTCCTGATCCATCC 59.657 57.143 0.00 0.00 0.00 3.51
5479 9440 3.261962 TGATCCATCCATCCATCCATCA 58.738 45.455 0.00 0.00 0.00 3.07
5521 9482 3.446570 AGGCTGCAAAGCATCGCC 61.447 61.111 12.70 12.70 46.06 5.54
5623 9585 2.691996 TGGCATCCTAGGCAGGCA 60.692 61.111 20.56 20.56 42.30 4.75
5624 9586 2.112718 GGCATCCTAGGCAGGCAG 59.887 66.667 17.98 1.08 42.30 4.85
5625 9587 2.446848 GGCATCCTAGGCAGGCAGA 61.447 63.158 17.98 0.00 42.30 4.26
5626 9588 1.227793 GCATCCTAGGCAGGCAGAC 60.228 63.158 2.96 0.00 42.30 3.51
5627 9589 1.068753 CATCCTAGGCAGGCAGACG 59.931 63.158 2.96 0.00 42.30 4.18
5628 9590 1.075970 ATCCTAGGCAGGCAGACGA 60.076 57.895 2.96 0.00 42.30 4.20
5630 9592 2.055042 CCTAGGCAGGCAGACGAGT 61.055 63.158 0.00 0.00 34.35 4.18
5631 9593 0.752009 CCTAGGCAGGCAGACGAGTA 60.752 60.000 0.00 0.00 34.35 2.59
5636 9598 2.042843 AGGCAGACGAGTAGGGGG 60.043 66.667 0.00 0.00 0.00 5.40
5722 9725 6.431198 TTTGTTCGTAAAAGAAGACTTGCT 57.569 33.333 0.00 0.00 36.39 3.91
5723 9726 6.431198 TTGTTCGTAAAAGAAGACTTGCTT 57.569 33.333 0.00 0.00 40.25 3.91
5724 9727 5.806286 TGTTCGTAAAAGAAGACTTGCTTG 58.194 37.500 0.00 0.00 36.83 4.01
5725 9728 4.468095 TCGTAAAAGAAGACTTGCTTGC 57.532 40.909 0.00 0.00 36.83 4.01
5734 9737 0.036022 GACTTGCTTGCCCTCTCACT 59.964 55.000 0.00 0.00 0.00 3.41
5764 9767 3.546724 TCCGTGTCAATTTCCAAGTTCA 58.453 40.909 0.00 0.00 0.00 3.18
5767 9770 3.066064 CGTGTCAATTTCCAAGTTCACCA 59.934 43.478 0.00 0.00 0.00 4.17
5770 9784 5.691754 GTGTCAATTTCCAAGTTCACCATTC 59.308 40.000 0.00 0.00 0.00 2.67
5795 9812 4.782019 TCCCTTTTGGTTGAATCAATCG 57.218 40.909 0.00 0.00 38.10 3.34
5860 9883 1.356938 GCGTCTTCGTTAGGGGAAAG 58.643 55.000 0.00 0.00 39.49 2.62
5884 9909 2.275380 GGAAAATGGCACTGGGCGT 61.275 57.895 0.00 0.00 46.16 5.68
5920 9953 2.743126 TGAAAGGGCCGTTACGTATTTG 59.257 45.455 11.83 0.00 0.00 2.32
5921 9954 1.089112 AAGGGCCGTTACGTATTTGC 58.911 50.000 9.42 0.00 0.00 3.68
5923 9956 1.083242 GGGCCGTTACGTATTTGCGA 61.083 55.000 3.52 0.00 35.59 5.10
5924 9957 0.720590 GGCCGTTACGTATTTGCGAA 59.279 50.000 3.52 0.00 35.59 4.70
5925 9958 1.267186 GGCCGTTACGTATTTGCGAAG 60.267 52.381 3.52 0.00 35.59 3.79
5926 9959 1.267186 GCCGTTACGTATTTGCGAAGG 60.267 52.381 3.52 0.00 35.59 3.46
5927 9960 1.267186 CCGTTACGTATTTGCGAAGGC 60.267 52.381 3.52 0.00 40.52 4.35
5928 9961 1.657094 CGTTACGTATTTGCGAAGGCT 59.343 47.619 0.00 0.00 40.82 4.58
5929 9962 2.284855 CGTTACGTATTTGCGAAGGCTC 60.285 50.000 0.00 0.00 40.82 4.70
5930 9963 1.930567 TACGTATTTGCGAAGGCTCC 58.069 50.000 0.00 0.00 40.82 4.70
5931 9964 1.082117 ACGTATTTGCGAAGGCTCCG 61.082 55.000 0.00 0.00 40.82 4.63
5934 9988 0.810031 TATTTGCGAAGGCTCCGAGC 60.810 55.000 12.27 12.27 41.46 5.03
5952 10006 2.203422 CCCCAACCAACCGCAAGA 60.203 61.111 0.00 0.00 43.02 3.02
5953 10007 1.830408 CCCCAACCAACCGCAAGAA 60.830 57.895 0.00 0.00 43.02 2.52
5954 10008 1.659794 CCCAACCAACCGCAAGAAG 59.340 57.895 0.00 0.00 43.02 2.85
6039 10098 1.527611 AGTGACAGACGGACGGACA 60.528 57.895 0.00 0.00 0.00 4.02
6056 10115 4.636435 AGGCAAACGACCCACCCG 62.636 66.667 0.00 0.00 0.00 5.28
6075 10150 1.939769 GAGACTCGAGTCCACAGGCC 61.940 65.000 35.83 14.40 45.85 5.19
6076 10151 2.203640 ACTCGAGTCCACAGGCCA 60.204 61.111 13.58 0.00 0.00 5.36
6077 10152 2.262915 CTCGAGTCCACAGGCCAC 59.737 66.667 5.01 0.00 0.00 5.01
6078 10153 3.633094 CTCGAGTCCACAGGCCACG 62.633 68.421 5.01 0.00 0.00 4.94
6079 10154 3.680786 CGAGTCCACAGGCCACGA 61.681 66.667 5.01 0.00 0.00 4.35
6080 10155 2.048127 GAGTCCACAGGCCACGAC 60.048 66.667 5.01 4.34 0.00 4.34
6081 10156 3.916392 GAGTCCACAGGCCACGACG 62.916 68.421 5.01 0.00 0.00 5.12
6082 10157 3.986006 GTCCACAGGCCACGACGA 61.986 66.667 5.01 0.00 0.00 4.20
6083 10158 3.228017 TCCACAGGCCACGACGAA 61.228 61.111 5.01 0.00 0.00 3.85
6084 10159 3.041940 CCACAGGCCACGACGAAC 61.042 66.667 5.01 0.00 0.00 3.95
6085 10160 3.041940 CACAGGCCACGACGAACC 61.042 66.667 5.01 0.00 0.00 3.62
6086 10161 4.657824 ACAGGCCACGACGAACCG 62.658 66.667 5.01 0.00 0.00 4.44
6130 10205 0.720027 GCTTTACTTTCGACGCTCCC 59.280 55.000 0.00 0.00 0.00 4.30
6131 10206 1.672145 GCTTTACTTTCGACGCTCCCT 60.672 52.381 0.00 0.00 0.00 4.20
6143 10218 3.368501 CTCCCTCCTCCCCTCCCA 61.369 72.222 0.00 0.00 0.00 4.37
6163 10238 3.764466 CGCCTTCCTCCTCTGCGT 61.764 66.667 0.00 0.00 40.33 5.24
6166 10241 1.153745 CCTTCCTCCTCTGCGTTCG 60.154 63.158 0.00 0.00 0.00 3.95
6167 10242 1.587054 CTTCCTCCTCTGCGTTCGT 59.413 57.895 0.00 0.00 0.00 3.85
6206 10290 1.681264 CAAAACGGCAAAACCTCTCCT 59.319 47.619 0.00 0.00 35.61 3.69
6209 10293 0.035458 ACGGCAAAACCTCTCCTCTG 59.965 55.000 0.00 0.00 35.61 3.35
6211 10295 0.962855 GGCAAAACCTCTCCTCTGCC 60.963 60.000 0.00 0.00 42.28 4.85
6212 10296 0.250901 GCAAAACCTCTCCTCTGCCA 60.251 55.000 0.00 0.00 0.00 4.92
6213 10297 1.819305 GCAAAACCTCTCCTCTGCCAA 60.819 52.381 0.00 0.00 0.00 4.52
6214 10298 2.157738 CAAAACCTCTCCTCTGCCAAG 58.842 52.381 0.00 0.00 0.00 3.61
6216 10300 1.846712 AACCTCTCCTCTGCCAAGCC 61.847 60.000 0.00 0.00 0.00 4.35
6217 10301 1.994507 CCTCTCCTCTGCCAAGCCT 60.995 63.158 0.00 0.00 0.00 4.58
6218 10302 1.521616 CTCTCCTCTGCCAAGCCTC 59.478 63.158 0.00 0.00 0.00 4.70
6219 10303 1.970352 CTCTCCTCTGCCAAGCCTCC 61.970 65.000 0.00 0.00 0.00 4.30
6220 10304 2.203983 TCCTCTGCCAAGCCTCCA 60.204 61.111 0.00 0.00 0.00 3.86
6221 10305 1.845627 CTCCTCTGCCAAGCCTCCAA 61.846 60.000 0.00 0.00 0.00 3.53
6224 10323 0.815734 CTCTGCCAAGCCTCCAAATG 59.184 55.000 0.00 0.00 0.00 2.32
6226 10325 2.182537 GCCAAGCCTCCAAATGCG 59.817 61.111 0.00 0.00 0.00 4.73
6255 10354 0.103208 CTAGCATCGAGGCGGAAACT 59.897 55.000 17.28 0.00 39.27 2.66
6561 10669 4.736896 GACGACCACGCCCAGTCC 62.737 72.222 0.00 0.00 43.96 3.85
6684 10807 4.796231 CAGTTCGAGTCCCGGGCG 62.796 72.222 18.49 14.88 39.14 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.306141 CCTGGGTGCTGGAGTAGGA 60.306 63.158 0.00 0.00 0.00 2.94
26 27 4.335647 CCAAGCGACCTGGGTGCT 62.336 66.667 8.88 8.88 41.60 4.40
30 31 4.785453 GGAGCCAAGCGACCTGGG 62.785 72.222 0.00 0.00 35.02 4.45
71 72 2.792290 CTGACGAGGATGCGCAACG 61.792 63.158 17.11 19.80 33.86 4.10
153 161 2.819117 TAGGAACGTGCAGCTGAGCG 62.819 60.000 20.43 21.85 37.31 5.03
168 176 1.987855 CTTGCCTCCGGGTGTAGGA 60.988 63.158 11.04 0.00 34.58 2.94
191 199 1.064240 TCGCCATGGACTAGACCACTA 60.064 52.381 18.40 0.00 43.03 2.74
208 216 1.066573 AGGATATAGTGGCAGCATCGC 60.067 52.381 0.00 0.00 0.00 4.58
209 217 2.232208 TGAGGATATAGTGGCAGCATCG 59.768 50.000 0.00 0.00 0.00 3.84
210 218 3.969287 TGAGGATATAGTGGCAGCATC 57.031 47.619 0.00 0.00 0.00 3.91
211 219 3.199508 GGATGAGGATATAGTGGCAGCAT 59.800 47.826 0.00 0.00 0.00 3.79
212 220 2.568956 GGATGAGGATATAGTGGCAGCA 59.431 50.000 0.00 0.00 0.00 4.41
213 221 2.836981 AGGATGAGGATATAGTGGCAGC 59.163 50.000 0.00 0.00 0.00 5.25
214 222 4.285517 ACAAGGATGAGGATATAGTGGCAG 59.714 45.833 0.00 0.00 0.00 4.85
215 223 4.234550 ACAAGGATGAGGATATAGTGGCA 58.765 43.478 0.00 0.00 0.00 4.92
216 224 4.899352 ACAAGGATGAGGATATAGTGGC 57.101 45.455 0.00 0.00 0.00 5.01
219 227 5.012561 GGAGCAACAAGGATGAGGATATAGT 59.987 44.000 0.00 0.00 0.00 2.12
221 229 5.158141 AGGAGCAACAAGGATGAGGATATA 58.842 41.667 0.00 0.00 0.00 0.86
222 230 3.979347 AGGAGCAACAAGGATGAGGATAT 59.021 43.478 0.00 0.00 0.00 1.63
223 231 3.387962 AGGAGCAACAAGGATGAGGATA 58.612 45.455 0.00 0.00 0.00 2.59
224 232 2.203584 AGGAGCAACAAGGATGAGGAT 58.796 47.619 0.00 0.00 0.00 3.24
225 233 1.661463 AGGAGCAACAAGGATGAGGA 58.339 50.000 0.00 0.00 0.00 3.71
226 234 2.768527 TCTAGGAGCAACAAGGATGAGG 59.231 50.000 0.00 0.00 0.00 3.86
227 235 4.502950 GGATCTAGGAGCAACAAGGATGAG 60.503 50.000 0.00 0.00 0.00 2.90
228 236 3.389329 GGATCTAGGAGCAACAAGGATGA 59.611 47.826 0.00 0.00 0.00 2.92
229 237 3.135348 TGGATCTAGGAGCAACAAGGATG 59.865 47.826 0.00 0.00 0.00 3.51
230 238 3.387962 TGGATCTAGGAGCAACAAGGAT 58.612 45.455 0.00 0.00 0.00 3.24
231 239 2.768527 CTGGATCTAGGAGCAACAAGGA 59.231 50.000 0.00 0.00 0.00 3.36
232 240 2.744494 GCTGGATCTAGGAGCAACAAGG 60.744 54.545 8.31 0.00 32.70 3.61
233 241 2.093288 TGCTGGATCTAGGAGCAACAAG 60.093 50.000 8.31 0.00 39.75 3.16
234 242 1.908619 TGCTGGATCTAGGAGCAACAA 59.091 47.619 8.31 0.00 39.75 2.83
235 243 1.571955 TGCTGGATCTAGGAGCAACA 58.428 50.000 8.31 0.00 39.75 3.33
277 285 2.711922 GGAGATCGAGCACCACCGT 61.712 63.158 12.50 0.00 0.00 4.83
305 313 2.663188 GCTAATCCTGCGAGGCCG 60.663 66.667 0.00 0.00 34.61 6.13
583 593 0.252197 AGCATCTGACTGCATGCAGA 59.748 50.000 45.50 28.48 46.70 4.26
675 686 1.758440 GATGGCCTAGTGGATGCGGA 61.758 60.000 3.32 0.00 34.57 5.54
841 852 3.079578 CACATTCTGGTGAAGATGCAGT 58.920 45.455 0.00 0.00 41.32 4.40
846 857 3.245016 TGGAAGCACATTCTGGTGAAGAT 60.245 43.478 0.00 0.00 41.32 2.40
847 858 2.106338 TGGAAGCACATTCTGGTGAAGA 59.894 45.455 0.00 0.00 41.32 2.87
848 859 2.507484 TGGAAGCACATTCTGGTGAAG 58.493 47.619 0.00 0.00 41.32 3.02
849 860 2.655090 TGGAAGCACATTCTGGTGAA 57.345 45.000 0.00 0.00 41.32 3.18
850 861 2.885135 ATGGAAGCACATTCTGGTGA 57.115 45.000 0.00 0.00 41.32 4.02
851 862 4.885907 AGAATATGGAAGCACATTCTGGTG 59.114 41.667 0.00 0.00 36.60 4.17
852 863 4.885907 CAGAATATGGAAGCACATTCTGGT 59.114 41.667 13.01 0.00 45.44 4.00
853 864 5.434352 CAGAATATGGAAGCACATTCTGG 57.566 43.478 13.01 0.00 45.44 3.86
855 866 5.999044 AGACAGAATATGGAAGCACATTCT 58.001 37.500 0.00 0.00 38.06 2.40
856 867 6.690194 AAGACAGAATATGGAAGCACATTC 57.310 37.500 0.00 0.00 37.17 2.67
857 868 6.660521 TGAAAGACAGAATATGGAAGCACATT 59.339 34.615 0.00 0.00 32.39 2.71
858 869 6.182627 TGAAAGACAGAATATGGAAGCACAT 58.817 36.000 0.00 0.00 34.90 3.21
859 870 5.559770 TGAAAGACAGAATATGGAAGCACA 58.440 37.500 0.00 0.00 0.00 4.57
881 892 5.486735 AAGAGGGATGCTTCAGATATCTG 57.513 43.478 24.32 24.32 45.08 2.90
882 893 5.845614 AGAAAGAGGGATGCTTCAGATATCT 59.154 40.000 0.00 0.00 0.00 1.98
883 894 6.112927 AGAAAGAGGGATGCTTCAGATATC 57.887 41.667 0.00 0.00 0.00 1.63
884 895 5.012975 GGAGAAAGAGGGATGCTTCAGATAT 59.987 44.000 0.00 0.00 0.00 1.63
885 896 4.346418 GGAGAAAGAGGGATGCTTCAGATA 59.654 45.833 0.00 0.00 0.00 1.98
886 897 3.136260 GGAGAAAGAGGGATGCTTCAGAT 59.864 47.826 0.00 0.00 0.00 2.90
887 898 2.503356 GGAGAAAGAGGGATGCTTCAGA 59.497 50.000 0.00 0.00 0.00 3.27
888 899 2.421248 GGGAGAAAGAGGGATGCTTCAG 60.421 54.545 0.00 0.00 0.00 3.02
889 900 1.561542 GGGAGAAAGAGGGATGCTTCA 59.438 52.381 0.00 0.00 0.00 3.02
890 901 1.843206 AGGGAGAAAGAGGGATGCTTC 59.157 52.381 0.00 0.00 0.00 3.86
891 902 1.843206 GAGGGAGAAAGAGGGATGCTT 59.157 52.381 0.00 0.00 0.00 3.91
892 903 1.506025 GAGGGAGAAAGAGGGATGCT 58.494 55.000 0.00 0.00 0.00 3.79
893 904 0.472044 GGAGGGAGAAAGAGGGATGC 59.528 60.000 0.00 0.00 0.00 3.91
894 905 2.046292 GAGGAGGGAGAAAGAGGGATG 58.954 57.143 0.00 0.00 0.00 3.51
895 906 1.412361 CGAGGAGGGAGAAAGAGGGAT 60.412 57.143 0.00 0.00 0.00 3.85
896 907 0.033011 CGAGGAGGGAGAAAGAGGGA 60.033 60.000 0.00 0.00 0.00 4.20
897 908 1.045911 CCGAGGAGGGAGAAAGAGGG 61.046 65.000 0.00 0.00 35.97 4.30
898 909 1.681486 GCCGAGGAGGGAGAAAGAGG 61.681 65.000 0.00 0.00 41.48 3.69
899 910 1.681486 GGCCGAGGAGGGAGAAAGAG 61.681 65.000 0.00 0.00 41.48 2.85
900 911 1.686110 GGCCGAGGAGGGAGAAAGA 60.686 63.158 0.00 0.00 41.48 2.52
901 912 2.736826 GGGCCGAGGAGGGAGAAAG 61.737 68.421 0.00 0.00 41.48 2.62
964 976 0.756442 GCCTGCTGAAATATGGGCCA 60.756 55.000 9.61 9.61 34.19 5.36
1025 1042 3.131478 ATTTTTCGAGCGGCCGGG 61.131 61.111 29.38 0.00 0.00 5.73
1212 1229 0.731994 GTACCGACGAGGAAGGAGAC 59.268 60.000 8.56 0.00 45.00 3.36
1286 4306 6.215495 AGAGAGAAAGCTAGATGGTTACAC 57.785 41.667 0.00 0.00 35.02 2.90
1288 4308 5.361285 TGGAGAGAGAAAGCTAGATGGTTAC 59.639 44.000 0.00 0.00 35.02 2.50
1289 4309 5.519808 TGGAGAGAGAAAGCTAGATGGTTA 58.480 41.667 0.00 0.00 35.02 2.85
1290 4310 4.357325 TGGAGAGAGAAAGCTAGATGGTT 58.643 43.478 0.00 0.00 38.10 3.67
1292 4312 5.185635 CCTATGGAGAGAGAAAGCTAGATGG 59.814 48.000 0.00 0.00 0.00 3.51
1298 4328 3.960102 CAGTCCTATGGAGAGAGAAAGCT 59.040 47.826 0.00 0.00 29.39 3.74
1425 4455 2.915659 AAGACCGCGTGGAGACCA 60.916 61.111 24.59 0.00 39.21 4.02
1729 4765 3.943381 TCATCATCCTCAGCAATGACAAC 59.057 43.478 0.00 0.00 34.88 3.32
1842 4881 8.044060 TCATGAAATACTTGATGAACACCTTC 57.956 34.615 0.00 0.00 32.95 3.46
2034 5073 5.199723 TCAAACCCATAGCAGAAATGCATA 58.800 37.500 0.00 0.00 37.25 3.14
2035 5074 4.025360 TCAAACCCATAGCAGAAATGCAT 58.975 39.130 0.00 0.00 37.25 3.96
2055 5094 8.729756 CACATCACAGGACAAAGTTATATTTCA 58.270 33.333 0.00 0.00 0.00 2.69
2056 5095 8.946085 TCACATCACAGGACAAAGTTATATTTC 58.054 33.333 0.00 0.00 0.00 2.17
2114 5154 7.361457 TGTTCCCATACTTCCTCAGTAATAG 57.639 40.000 0.00 0.00 41.56 1.73
2128 5168 4.512944 CAGTGCTGACATATGTTCCCATAC 59.487 45.833 10.30 6.22 36.40 2.39
2160 5200 6.412362 TTCTAATGAGGGAGCTAACAGATC 57.588 41.667 0.00 0.00 0.00 2.75
2227 5268 6.834168 AAACCACGACAAGAATTATGGAAT 57.166 33.333 0.00 0.00 0.00 3.01
2268 5309 4.542662 AACAGCAAGAGCAATAATAGCG 57.457 40.909 0.00 0.00 45.49 4.26
2282 5323 9.609346 AGAGTAAAGTAAAGTTTCTAACAGCAA 57.391 29.630 0.00 0.00 0.00 3.91
2306 5347 0.991146 TGCATGTGGGAGGCTTAAGA 59.009 50.000 6.67 0.00 30.62 2.10
2345 5386 4.026744 CCACAGGAGTAAGGATTCTCTCA 58.973 47.826 0.00 0.00 33.09 3.27
2399 5440 7.187244 CAAAATATGCACCTGACTCTCTATG 57.813 40.000 0.00 0.00 0.00 2.23
2498 5549 3.326880 GGTAGAGAACCTGGAAAGGACAA 59.673 47.826 0.00 0.00 45.75 3.18
2652 5703 8.807581 GCATTAACAAGCAGTTATCCAAATAAC 58.192 33.333 3.09 1.00 45.09 1.89
2752 5804 6.345298 TGTAGCTGAAATCGATGTATCCAAA 58.655 36.000 0.00 0.00 0.00 3.28
2991 6046 7.776107 AGACAATGGGATCACATATATCTACG 58.224 38.462 11.76 0.00 0.00 3.51
3199 6254 5.955961 TCAGATGACTAATGACCATCCAA 57.044 39.130 0.00 0.00 37.88 3.53
3278 6333 1.035932 CCCCATCTGGAAGCTGCAAG 61.036 60.000 1.02 0.00 37.39 4.01
3650 7355 0.330941 TAGTTGCCACATCCATGCCA 59.669 50.000 0.00 0.00 0.00 4.92
3717 7422 8.713271 GTCATAGTATCCTATTAAACAAGCAGC 58.287 37.037 0.00 0.00 31.29 5.25
3751 7456 5.627499 ATCGTGCTGTCATAACAAAATGT 57.373 34.783 0.00 0.00 34.24 2.71
3800 7505 6.525578 AGTCCGATGTGACTACAGATAAAA 57.474 37.500 0.00 0.00 43.65 1.52
3905 7610 6.882610 TGAATGTGTTCCCTGATATTATGC 57.117 37.500 0.00 0.00 33.26 3.14
3969 7674 6.207810 TCCCACACCAATTACAAAGTAATCAC 59.792 38.462 3.16 0.00 0.00 3.06
4018 7723 5.713861 ACCTTGAACCGTGTAGTTATAGAGT 59.286 40.000 0.00 0.00 0.00 3.24
4019 7724 6.127814 TGACCTTGAACCGTGTAGTTATAGAG 60.128 42.308 0.00 0.00 0.00 2.43
4020 7725 5.711506 TGACCTTGAACCGTGTAGTTATAGA 59.288 40.000 0.00 0.00 0.00 1.98
4021 7726 5.803967 GTGACCTTGAACCGTGTAGTTATAG 59.196 44.000 0.00 0.00 0.00 1.31
4053 7758 5.815740 TCCAAAACTAAGTGTCTGAACTCAC 59.184 40.000 0.00 0.00 35.13 3.51
4055 7760 7.117956 GGTATCCAAAACTAAGTGTCTGAACTC 59.882 40.741 0.00 0.00 0.00 3.01
4077 7783 5.249393 AGAGATCAACAGGTTCAACAGGTAT 59.751 40.000 0.00 0.00 0.00 2.73
4080 7786 4.013267 AGAGATCAACAGGTTCAACAGG 57.987 45.455 0.00 0.00 0.00 4.00
4418 8218 7.733969 AGTGCTACAGATGATCATGAACTATT 58.266 34.615 14.30 0.00 0.00 1.73
4427 8231 6.721704 ATGAAGTAGTGCTACAGATGATCA 57.278 37.500 11.39 0.00 38.48 2.92
4442 8246 8.197988 ACAGTAGCGGAAAATAAATGAAGTAG 57.802 34.615 0.00 0.00 0.00 2.57
4449 8254 9.705290 AATCAAAAACAGTAGCGGAAAATAAAT 57.295 25.926 0.00 0.00 0.00 1.40
4452 8257 8.020819 CAGAATCAAAAACAGTAGCGGAAAATA 58.979 33.333 0.00 0.00 0.00 1.40
4453 8258 6.863126 CAGAATCAAAAACAGTAGCGGAAAAT 59.137 34.615 0.00 0.00 0.00 1.82
4474 8283 4.778213 ATATTCTGCTGCTTACCCAGAA 57.222 40.909 0.00 4.97 46.10 3.02
4505 8314 1.099879 GGTCATGAGGCATGTGGAGC 61.100 60.000 0.00 0.00 41.98 4.70
4544 8360 9.570488 ACGTGAAGAACTAGAGATAATAACAAC 57.430 33.333 0.00 0.00 0.00 3.32
4620 8500 6.861065 AAACATTACTTGTCAGACGTCAAT 57.139 33.333 19.50 2.93 37.68 2.57
4621 8501 6.238266 GGAAAACATTACTTGTCAGACGTCAA 60.238 38.462 19.50 1.95 37.68 3.18
4756 8640 2.637872 CCTTTACAGTCTGTCCCTCCAA 59.362 50.000 9.26 0.00 0.00 3.53
4762 8646 5.830000 AACAAAACCTTTACAGTCTGTCC 57.170 39.130 9.26 0.00 0.00 4.02
4763 8647 7.695201 GTGTTAACAAAACCTTTACAGTCTGTC 59.305 37.037 10.51 0.00 0.00 3.51
4764 8648 7.392393 AGTGTTAACAAAACCTTTACAGTCTGT 59.608 33.333 10.51 10.99 0.00 3.41
4765 8649 7.758495 AGTGTTAACAAAACCTTTACAGTCTG 58.242 34.615 10.51 0.00 0.00 3.51
4766 8650 7.933215 AGTGTTAACAAAACCTTTACAGTCT 57.067 32.000 10.51 0.00 0.00 3.24
4767 8651 9.659830 CATAGTGTTAACAAAACCTTTACAGTC 57.340 33.333 10.51 0.00 0.00 3.51
4854 8741 8.701908 AAGCATAACTGATTGACATAATGGAT 57.298 30.769 0.00 0.00 27.73 3.41
4931 8818 8.740123 TCACAATTGTAAACTTAAAGTGAGGA 57.260 30.769 11.53 0.00 0.00 3.71
4940 8827 7.648039 ACCAAACCTCACAATTGTAAACTTA 57.352 32.000 11.53 0.00 0.00 2.24
4954 8841 6.783708 AACAATTGAAAGTACCAAACCTCA 57.216 33.333 13.59 0.00 0.00 3.86
4955 8842 7.039270 ACAAACAATTGAAAGTACCAAACCTC 58.961 34.615 13.59 0.00 38.94 3.85
4961 8848 9.575868 TTATAGGACAAACAATTGAAAGTACCA 57.424 29.630 13.59 0.00 38.94 3.25
4992 8882 9.897744 CATGATGCTGACTTAGTTTTCTTTTTA 57.102 29.630 0.00 0.00 0.00 1.52
4996 8886 6.006449 ACCATGATGCTGACTTAGTTTTCTT 58.994 36.000 0.00 0.00 0.00 2.52
4998 8888 5.886960 ACCATGATGCTGACTTAGTTTTC 57.113 39.130 0.00 0.00 0.00 2.29
5002 8892 5.683876 AAGTACCATGATGCTGACTTAGT 57.316 39.130 0.00 0.00 0.00 2.24
5003 8893 5.233050 CGAAAGTACCATGATGCTGACTTAG 59.767 44.000 0.00 1.71 0.00 2.18
5004 8894 5.105513 TCGAAAGTACCATGATGCTGACTTA 60.106 40.000 0.00 0.00 0.00 2.24
5006 8896 3.195610 TCGAAAGTACCATGATGCTGACT 59.804 43.478 0.00 0.00 0.00 3.41
5007 8897 3.521560 TCGAAAGTACCATGATGCTGAC 58.478 45.455 0.00 0.00 0.00 3.51
5008 8898 3.885724 TCGAAAGTACCATGATGCTGA 57.114 42.857 0.00 0.00 0.00 4.26
5009 8899 4.571984 TGATTCGAAAGTACCATGATGCTG 59.428 41.667 0.00 0.00 0.00 4.41
5015 8905 5.582269 AGACACATGATTCGAAAGTACCATG 59.418 40.000 0.00 12.76 37.69 3.66
5020 8910 6.147164 GGTTGAAGACACATGATTCGAAAGTA 59.853 38.462 0.00 0.00 0.00 2.24
5026 8916 2.736721 ACGGTTGAAGACACATGATTCG 59.263 45.455 0.00 0.00 0.00 3.34
5027 8917 3.120199 CCACGGTTGAAGACACATGATTC 60.120 47.826 0.00 0.00 0.00 2.52
5028 8918 2.813754 CCACGGTTGAAGACACATGATT 59.186 45.455 0.00 0.00 0.00 2.57
5034 8924 2.457366 AGATCCACGGTTGAAGACAC 57.543 50.000 0.00 0.00 0.00 3.67
5052 8942 9.561069 ACTATGATGCTATAACCTTGGTTTAAG 57.439 33.333 10.52 9.32 36.11 1.85
5086 8982 3.195698 GGGATTGCTGTCGCCGTC 61.196 66.667 0.00 0.00 34.43 4.79
5087 8983 4.778143 GGGGATTGCTGTCGCCGT 62.778 66.667 8.73 0.00 40.74 5.68
5090 8986 0.178068 TAAGAGGGGATTGCTGTCGC 59.822 55.000 0.00 0.00 0.00 5.19
5091 8987 2.158900 ACATAAGAGGGGATTGCTGTCG 60.159 50.000 0.00 0.00 0.00 4.35
5092 8988 3.118261 TCACATAAGAGGGGATTGCTGTC 60.118 47.826 0.00 0.00 0.00 3.51
5093 8989 2.846206 TCACATAAGAGGGGATTGCTGT 59.154 45.455 0.00 0.00 0.00 4.40
5102 8998 5.065218 GCATTACACAACTCACATAAGAGGG 59.935 44.000 0.00 0.00 39.97 4.30
5126 9023 0.729116 CGTGTAGGGCTTTCATGCAG 59.271 55.000 0.00 0.00 34.04 4.41
5154 9051 0.033796 AGGAACCATGCACCATGAGG 60.034 55.000 6.77 0.00 43.81 3.86
5156 9053 1.616725 GGAAGGAACCATGCACCATGA 60.617 52.381 6.77 0.00 43.81 3.07
5166 9063 1.559682 GTCCTAGCATGGAAGGAACCA 59.440 52.381 0.00 0.00 43.44 3.67
5167 9064 1.840635 AGTCCTAGCATGGAAGGAACC 59.159 52.381 0.00 0.00 43.44 3.62
5179 9115 2.977914 TGAGTGATGCAAAGTCCTAGC 58.022 47.619 0.00 0.00 0.00 3.42
5191 9130 4.027050 CGTCGAATGACAGAATGAGTGATG 60.027 45.833 0.00 0.00 45.80 3.07
5199 9138 1.471676 GGAGCCGTCGAATGACAGAAT 60.472 52.381 0.00 0.00 45.80 2.40
5216 9155 3.268023 AGACATTTTCCTAAGGCGGAG 57.732 47.619 0.00 0.00 33.89 4.63
5225 9164 5.730550 TGCGTTATCACTAGACATTTTCCT 58.269 37.500 0.00 0.00 0.00 3.36
5231 9170 5.324784 TCAACTGCGTTATCACTAGACAT 57.675 39.130 0.00 0.00 0.00 3.06
5235 9174 6.418226 GGTTAGATCAACTGCGTTATCACTAG 59.582 42.308 0.00 0.00 37.30 2.57
5238 9177 4.868171 TGGTTAGATCAACTGCGTTATCAC 59.132 41.667 0.00 0.00 37.30 3.06
5265 9210 1.804151 TGCACTTCAATAACGCTCCAC 59.196 47.619 0.00 0.00 0.00 4.02
5274 9219 1.176527 GGGCAGCTTGCACTTCAATA 58.823 50.000 9.78 0.00 45.01 1.90
5283 9228 0.242017 CAACTTACAGGGCAGCTTGC 59.758 55.000 0.00 0.00 44.08 4.01
5314 9272 7.662604 AGAATGGCTGCAAAAAGATTTAAAG 57.337 32.000 0.50 0.00 0.00 1.85
5315 9273 8.344098 CAAAGAATGGCTGCAAAAAGATTTAAA 58.656 29.630 0.50 0.00 0.00 1.52
5316 9274 7.520292 GCAAAGAATGGCTGCAAAAAGATTTAA 60.520 33.333 0.50 0.00 36.09 1.52
5421 9379 1.301293 GGACTGGGAAGCCAGGAAG 59.699 63.158 0.00 0.00 41.67 3.46
5427 9385 2.361737 GCTTGGGACTGGGAAGCC 60.362 66.667 0.00 0.00 36.84 4.35
5442 9403 0.681564 ATCAGGAGGAAGTCGTCGCT 60.682 55.000 0.00 0.00 0.00 4.93
5463 9424 5.714806 TGATTGATTGATGGATGGATGGATG 59.285 40.000 0.00 0.00 0.00 3.51
5464 9425 5.899278 TGATTGATTGATGGATGGATGGAT 58.101 37.500 0.00 0.00 0.00 3.41
5465 9426 5.327737 TGATTGATTGATGGATGGATGGA 57.672 39.130 0.00 0.00 0.00 3.41
5466 9427 6.351033 GGATTGATTGATTGATGGATGGATGG 60.351 42.308 0.00 0.00 0.00 3.51
5467 9428 6.210584 TGGATTGATTGATTGATGGATGGATG 59.789 38.462 0.00 0.00 0.00 3.51
5479 9440 5.240183 GTCACCGATGATGGATTGATTGATT 59.760 40.000 0.00 0.00 37.14 2.57
5591 9553 4.020396 AGGATGCCACTACAGATCATCATC 60.020 45.833 0.00 0.00 36.25 2.92
5638 9600 6.948353 AGTTATACAGATTTACATGCGCAAG 58.052 36.000 17.11 14.15 43.44 4.01
5639 9601 6.918892 AGTTATACAGATTTACATGCGCAA 57.081 33.333 17.11 0.00 0.00 4.85
5640 9602 6.714492 CAAGTTATACAGATTTACATGCGCA 58.286 36.000 14.96 14.96 0.00 6.09
5722 9725 3.576078 TTTCTTCAAGTGAGAGGGCAA 57.424 42.857 0.00 0.00 0.00 4.52
5723 9726 3.560025 GGATTTCTTCAAGTGAGAGGGCA 60.560 47.826 0.00 0.00 0.00 5.36
5724 9727 3.013219 GGATTTCTTCAAGTGAGAGGGC 58.987 50.000 0.00 0.00 0.00 5.19
5725 9728 3.265791 CGGATTTCTTCAAGTGAGAGGG 58.734 50.000 0.00 0.00 0.00 4.30
5734 9737 5.300539 TGGAAATTGACACGGATTTCTTCAA 59.699 36.000 9.74 0.00 40.43 2.69
5764 9767 4.719273 TCAACCAAAAGGGAAAAGAATGGT 59.281 37.500 0.00 0.00 41.23 3.55
5767 9770 7.135591 TGATTCAACCAAAAGGGAAAAGAAT 57.864 32.000 0.00 0.00 41.15 2.40
5770 9784 6.146021 CGATTGATTCAACCAAAAGGGAAAAG 59.854 38.462 0.15 0.00 41.15 2.27
5795 9812 2.349912 GCGCCAGTTTCTTTTCAGAGAC 60.350 50.000 0.00 0.00 34.86 3.36
5829 9849 1.701704 GAAGACGCCTTGCCATTTTG 58.298 50.000 0.00 0.00 31.62 2.44
5843 9863 3.690475 TTCCTTTCCCCTAACGAAGAC 57.310 47.619 0.00 0.00 0.00 3.01
5860 9883 2.289631 CCCAGTGCCATTTTCCTTTTCC 60.290 50.000 0.00 0.00 0.00 3.13
5898 9923 2.014335 ATACGTAACGGCCCTTTCAC 57.986 50.000 0.00 0.00 0.00 3.18
5927 9960 3.646715 TTGGTTGGGGGCTCGGAG 61.647 66.667 0.00 0.00 0.00 4.63
5928 9961 3.961414 GTTGGTTGGGGGCTCGGA 61.961 66.667 0.00 0.00 0.00 4.55
5934 9988 3.302344 CTTGCGGTTGGTTGGGGG 61.302 66.667 0.00 0.00 0.00 5.40
6030 10089 3.411351 CGTTTGCCTGTCCGTCCG 61.411 66.667 0.00 0.00 0.00 4.79
6031 10090 2.029964 TCGTTTGCCTGTCCGTCC 59.970 61.111 0.00 0.00 0.00 4.79
6039 10098 4.636435 CGGGTGGGTCGTTTGCCT 62.636 66.667 0.00 0.00 0.00 4.75
6056 10115 1.509004 GCCTGTGGACTCGAGTCTC 59.491 63.158 36.98 29.60 44.20 3.36
6085 10160 1.440353 CTTTTTCCGAACCGCAGCG 60.440 57.895 8.18 8.18 0.00 5.18
6086 10161 1.729484 GCTTTTTCCGAACCGCAGC 60.729 57.895 0.00 0.00 0.00 5.25
6087 10162 1.440353 CGCTTTTTCCGAACCGCAG 60.440 57.895 0.00 0.00 0.00 5.18
6130 10205 2.812619 GCGAATGGGAGGGGAGGAG 61.813 68.421 0.00 0.00 0.00 3.69
6131 10206 2.768344 GCGAATGGGAGGGGAGGA 60.768 66.667 0.00 0.00 0.00 3.71
6143 10218 1.524482 GCAGAGGAGGAAGGCGAAT 59.476 57.895 0.00 0.00 0.00 3.34
6163 10238 4.992511 CCGGGGGTTTGCGACGAA 62.993 66.667 0.00 0.00 0.00 3.85
6206 10290 1.252904 GCATTTGGAGGCTTGGCAGA 61.253 55.000 0.00 0.00 0.00 4.26
6209 10293 1.876497 TTCGCATTTGGAGGCTTGGC 61.876 55.000 0.00 0.00 0.00 4.52
6211 10295 1.917273 CATTCGCATTTGGAGGCTTG 58.083 50.000 0.00 0.00 0.00 4.01
6212 10296 0.174162 GCATTCGCATTTGGAGGCTT 59.826 50.000 0.00 0.00 38.36 4.35
6213 10297 1.811860 GCATTCGCATTTGGAGGCT 59.188 52.632 0.00 0.00 38.36 4.58
6214 10298 1.587088 CGCATTCGCATTTGGAGGC 60.587 57.895 0.00 0.00 38.40 4.70
6236 10335 0.103208 AGTTTCCGCCTCGATGCTAG 59.897 55.000 11.00 2.51 0.00 3.42
6241 10340 2.125106 GGCAGTTTCCGCCTCGAT 60.125 61.111 0.00 0.00 46.56 3.59
6556 10664 4.452733 GAAGGACGGCGGGGACTG 62.453 72.222 13.24 0.00 38.10 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.