AutoCloner

Multiple sequence alignment - TraesCS3B01G446900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G446900	chr3B	100.000	3349	0	0	1	3349	686128725	686125377	0.000000e+00	6185.0
1	TraesCS3B01G446900	chr3B	100.000	28	0	0	2354	2381	63389339	63389312	6.000000e-03	52.8
2	TraesCS3B01G446900	chr3D	95.548	1258	49	3	984	2235	520708932	520707676	0.000000e+00	2006.0
3	TraesCS3B01G446900	chr3D	89.493	533	34	9	1	514	121659531	121659002	0.000000e+00	654.0
4	TraesCS3B01G446900	chr3D	86.545	275	14	9	259	514	121664162	121663892	7.070000e-72	281.0
5	TraesCS3B01G446900	chr3D	88.261	230	19	2	619	840	181088676	181088905	5.510000e-68	268.0
6	TraesCS3B01G446900	chr3D	89.005	191	3	7	2395	2567	520706289	520706099	1.560000e-53	220.0
7	TraesCS3B01G446900	chr3D	84.279	229	25	5	620	839	118253624	118253398	2.620000e-51	213.0
8	TraesCS3B01G446900	chr3D	94.355	124	4	3	2237	2358	520706421	520706299	1.590000e-43	187.0
9	TraesCS3B01G446900	chr3D	96.825	63	2	0	564	626	520713456	520713394	4.570000e-19	106.0
10	TraesCS3B01G446900	chr7B	92.473	744	43	4	2617	3347	100013085	100012342	0.000000e+00	1051.0
11	TraesCS3B01G446900	chr7B	84.716	229	27	2	619	839	701065348	701065120	4.350000e-54	222.0
12	TraesCS3B01G446900	chr5A	77.863	1301	210	44	1004	2263	382782479	382781216	0.000000e+00	736.0
13	TraesCS3B01G446900	chr5A	92.661	218	12	4	2583	2797	549379559	549379343	9.020000e-81	311.0
14	TraesCS3B01G446900	chr5A	78.037	428	73	17	2	422	89032812	89032399	1.990000e-62	250.0
15	TraesCS3B01G446900	chr5A	81.034	174	24	4	619	785	42688483	42688654	2.710000e-26	130.0
16	TraesCS3B01G446900	chr5A	90.909	44	4	0	2358	2401	496024698	496024655	3.610000e-05	60.2
17	TraesCS3B01G446900	chr1D	89.286	532	37	10	1	514	13486359	13485830	0.000000e+00	649.0
18	TraesCS3B01G446900	chr1D	88.015	267	15	7	265	514	13495131	13494865	1.950000e-77	300.0
19	TraesCS3B01G446900	chr1D	93.939	66	4	0	842	907	432229096	432229161	2.130000e-17	100.0
20	TraesCS3B01G446900	chr1D	95.556	45	2	0	2357	2401	454462924	454462880	4.630000e-09	73.1
21	TraesCS3B01G446900	chr2A	89.118	533	35	8	1	514	648998472	648997944	2.820000e-180	641.0
22	TraesCS3B01G446900	chr2A	85.556	270	19	8	265	514	649003441	649003172	7.120000e-67	265.0
23	TraesCS3B01G446900	chr2A	85.650	223	22	4	619	832	71426928	71427149	3.360000e-55	226.0
24	TraesCS3B01G446900	chr2A	84.454	238	26	5	612	839	41476656	41476420	1.210000e-54	224.0
25	TraesCS3B01G446900	chr4A	88.993	536	29	14	1	514	540088716	540088189	1.310000e-178	636.0
26	TraesCS3B01G446900	chr4A	86.029	272	13	12	265	514	540093689	540093421	5.510000e-68	268.0
27	TraesCS3B01G446900	chr4A	84.649	228	26	3	620	839	676930493	676930267	5.630000e-53	219.0
28	TraesCS3B01G446900	chr4A	78.161	174	31	5	2095	2263	656775990	656776161	1.640000e-18	104.0
29	TraesCS3B01G446900	chr4D	78.723	752	137	11	2583	3316	315601800	315602546	6.500000e-132	481.0
30	TraesCS3B01G446900	chr5D	85.217	230	24	4	619	839	464810377	464810149	9.350000e-56	228.0
31	TraesCS3B01G446900	chr4B	84.783	230	25	4	619	839	143893761	143893533	4.350000e-54	222.0
32	TraesCS3B01G446900	chr2B	83.843	229	29	2	619	839	771235390	771235618	9.410000e-51	211.0
33	TraesCS3B01G446900	chr6A	82.700	237	31	4	612	839	562298467	562298702	5.670000e-48	202.0
34	TraesCS3B01G446900	chr1B	79.570	186	25	8	619	793	573720922	573720739	1.630000e-23	121.0
35	TraesCS3B01G446900	chr7D	80.488	164	25	6	2095	2253	45225600	45225761	5.870000e-23	119.0
36	TraesCS3B01G446900	chr7D	95.349	43	2	0	2357	2399	578790051	578790009	6.000000e-08	69.4
37	TraesCS3B01G446900	chr7A	78.804	184	32	5	2075	2253	47444139	47444320	2.110000e-22	117.0
38	TraesCS3B01G446900	chrUn	79.310	174	29	5	2095	2263	355411282	355411111	7.590000e-22	115.0
39	TraesCS3B01G446900	chrUn	79.310	174	29	5	2095	2263	430531337	430531508	7.590000e-22	115.0
40	TraesCS3B01G446900	chr6B	95.122	41	2	0	2358	2398	155555224	155555184	7.760000e-07	65.8
41	TraesCS3B01G446900	chr1A	100.000	29	0	0	2372	2400	536884597	536884625	2.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G446900	chr3B	686125377	686128725	3348	True	6185.000000	6185	100.000000	1	3349	1	chr3B.!!$R2	3348
1	TraesCS3B01G446900	chr3D	520706099	520708932	2833	True	804.333333	2006	92.969333	984	2567	3	chr3D.!!$R5	1583
2	TraesCS3B01G446900	chr3D	121659002	121659531	529	True	654.000000	654	89.493000	1	514	1	chr3D.!!$R2	513
3	TraesCS3B01G446900	chr7B	100012342	100013085	743	True	1051.000000	1051	92.473000	2617	3347	1	chr7B.!!$R1	730
4	TraesCS3B01G446900	chr5A	382781216	382782479	1263	True	736.000000	736	77.863000	1004	2263	1	chr5A.!!$R2	1259
5	TraesCS3B01G446900	chr1D	13485830	13486359	529	True	649.000000	649	89.286000	1	514	1	chr1D.!!$R1	513
6	TraesCS3B01G446900	chr2A	648997944	648998472	528	True	641.000000	641	89.118000	1	514	1	chr2A.!!$R2	513
7	TraesCS3B01G446900	chr4A	540088189	540088716	527	True	636.000000	636	88.993000	1	514	1	chr4A.!!$R1	513
8	TraesCS3B01G446900	chr4D	315601800	315602546	746	False	481.000000	481	78.723000	2583	3316	1	chr4D.!!$F1	733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
765	787	0.107945	AGCCTCAACATTCGAGCTCC	60.108	55.0	8.47	0.0	0.0	4.7	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2722	4053	0.320421	ACACCGTAGCGCATGAACTT	60.32	50.0	11.47	0.0	0.0	2.66	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	1.429463	AGAGCGATTCCAACAACGAC	58.571	50.000	0.00	0.00	0.00	4.34
53	54	1.087771	GGTTTCCGACATGGCTACGG	61.088	60.000	13.75	13.75	46.71	4.02
63	64	3.792736	GGCTACGGGGATGTGGCA	61.793	66.667	4.67	0.00	46.90	4.92
114	115	1.745115	CCGCCCTCGCTTCAAATCA	60.745	57.895	0.00	0.00	0.00	2.57
144	145	0.620030	GCTGGGGATTTTGGGCAAAT	59.380	50.000	0.00	0.00	37.84	2.32
169	170	1.021390	GGAGTGAATCAGCACCCACG	61.021	60.000	0.00	0.00	39.59	4.94
207	208	0.385348	CGATCGAGAGGATGTGAGCG	60.385	60.000	10.26	0.00	34.82	5.03
308	310	0.970640	TCGAAACAAGGGTGGATCGA	59.029	50.000	0.00	0.00	41.04	3.59
360	362	6.688073	TTCAGAAAGAAGAAGGTGAGGTAT	57.312	37.500	0.00	0.00	0.00	2.73
403	408	4.158764	CAGAGAAGGTTAGGTGTACAGAGG	59.841	50.000	0.00	0.00	0.00	3.69
405	410	5.014966	AGAGAAGGTTAGGTGTACAGAGGTA	59.985	44.000	0.00	0.00	0.00	3.08
406	411	5.840081	AGAAGGTTAGGTGTACAGAGGTAT	58.160	41.667	0.00	0.00	0.00	2.73
431	437	0.741326	TACACGCATGCCTCTCTCTC	59.259	55.000	13.15	0.00	0.00	3.20
432	438	0.969917	ACACGCATGCCTCTCTCTCT	60.970	55.000	13.15	0.00	0.00	3.10
433	439	0.528033	CACGCATGCCTCTCTCTCTG	60.528	60.000	13.15	0.00	0.00	3.35
434	440	1.592131	CGCATGCCTCTCTCTCTGC	60.592	63.158	13.15	0.00	0.00	4.26
435	441	1.227615	GCATGCCTCTCTCTCTGCC	60.228	63.158	6.36	0.00	0.00	4.85
436	442	1.688269	GCATGCCTCTCTCTCTGCCT	61.688	60.000	6.36	0.00	0.00	4.75
448	470	0.667487	CTCTGCCTACCACACACACG	60.667	60.000	0.00	0.00	0.00	4.49
451	473	1.890041	GCCTACCACACACACGCAA	60.890	57.895	0.00	0.00	0.00	4.85
460	482	2.591429	CACACGCAACTCTGCCCA	60.591	61.111	0.00	0.00	46.56	5.36
485	507	0.247460	CTTCATGTCTGGCGAGTGGA	59.753	55.000	0.00	0.00	0.00	4.02
511	533	3.152341	CTCTTTCCTTGTCCACTGCATT	58.848	45.455	0.00	0.00	0.00	3.56
514	536	4.701651	TCTTTCCTTGTCCACTGCATTATG	59.298	41.667	0.00	0.00	0.00	1.90
515	537	3.719268	TCCTTGTCCACTGCATTATGT	57.281	42.857	0.00	0.00	0.00	2.29
516	538	3.346315	TCCTTGTCCACTGCATTATGTG	58.654	45.455	0.00	0.00	0.00	3.21
517	539	3.084039	CCTTGTCCACTGCATTATGTGT	58.916	45.455	3.47	0.00	32.76	3.72
518	540	3.119743	CCTTGTCCACTGCATTATGTGTG	60.120	47.826	11.36	11.36	32.76	3.82
519	541	3.415457	TGTCCACTGCATTATGTGTGA	57.585	42.857	17.02	0.00	32.72	3.58
520	542	3.073678	TGTCCACTGCATTATGTGTGAC	58.926	45.455	17.02	13.60	36.20	3.67
521	543	3.073678	GTCCACTGCATTATGTGTGACA	58.926	45.455	17.02	0.00	35.96	3.58
522	544	3.691118	GTCCACTGCATTATGTGTGACAT	59.309	43.478	17.02	0.00	42.35	3.06
523	545	4.156556	GTCCACTGCATTATGTGTGACATT	59.843	41.667	17.02	0.00	39.88	2.71
524	546	4.766373	TCCACTGCATTATGTGTGACATTT	59.234	37.500	17.02	0.00	39.88	2.32
525	547	5.097529	CCACTGCATTATGTGTGACATTTC	58.902	41.667	17.02	0.00	39.88	2.17
526	548	5.106038	CCACTGCATTATGTGTGACATTTCT	60.106	40.000	17.02	0.00	39.88	2.52
527	549	6.384224	CACTGCATTATGTGTGACATTTCTT	58.616	36.000	12.44	0.00	39.88	2.52
528	550	6.525628	CACTGCATTATGTGTGACATTTCTTC	59.474	38.462	12.44	0.00	39.88	2.87
529	551	6.432162	ACTGCATTATGTGTGACATTTCTTCT	59.568	34.615	0.00	0.00	39.88	2.85
530	552	6.845302	TGCATTATGTGTGACATTTCTTCTC	58.155	36.000	0.00	0.00	39.88	2.87
531	553	6.656270	TGCATTATGTGTGACATTTCTTCTCT	59.344	34.615	0.00	0.00	39.88	3.10
532	554	7.148356	TGCATTATGTGTGACATTTCTTCTCTC	60.148	37.037	0.00	0.00	39.88	3.20
533	555	7.148356	GCATTATGTGTGACATTTCTTCTCTCA	60.148	37.037	0.00	0.00	39.88	3.27
534	556	7.895975	TTATGTGTGACATTTCTTCTCTCAG	57.104	36.000	0.00	0.00	39.88	3.35
535	557	5.535753	TGTGTGACATTTCTTCTCTCAGA	57.464	39.130	0.00	0.00	0.00	3.27
536	558	5.292765	TGTGTGACATTTCTTCTCTCAGAC	58.707	41.667	0.00	0.00	0.00	3.51
537	559	5.069648	TGTGTGACATTTCTTCTCTCAGACT	59.930	40.000	0.00	0.00	0.00	3.24
538	560	5.633182	GTGTGACATTTCTTCTCTCAGACTC	59.367	44.000	0.00	0.00	0.00	3.36
539	561	4.856487	GTGACATTTCTTCTCTCAGACTCG	59.144	45.833	0.00	0.00	0.00	4.18
540	562	3.843999	ACATTTCTTCTCTCAGACTCGC	58.156	45.455	0.00	0.00	0.00	5.03
541	563	3.256879	ACATTTCTTCTCTCAGACTCGCA	59.743	43.478	0.00	0.00	0.00	5.10
542	564	3.567576	TTTCTTCTCTCAGACTCGCAG	57.432	47.619	0.00	0.00	0.00	5.18
543	565	0.808125	TCTTCTCTCAGACTCGCAGC	59.192	55.000	0.00	0.00	0.00	5.25
544	566	0.525311	CTTCTCTCAGACTCGCAGCA	59.475	55.000	0.00	0.00	0.00	4.41
545	567	0.525311	TTCTCTCAGACTCGCAGCAG	59.475	55.000	0.00	0.00	0.00	4.24
546	568	1.516821	CTCTCAGACTCGCAGCAGC	60.517	63.158	0.00	0.00	37.42	5.25
557	579	3.406682	GCAGCAGCGCAAGTATTTT	57.593	47.368	11.47	0.00	41.68	1.82
558	580	1.701704	GCAGCAGCGCAAGTATTTTT	58.298	45.000	11.47	0.00	41.68	1.94
559	581	1.650645	GCAGCAGCGCAAGTATTTTTC	59.349	47.619	11.47	0.00	41.68	2.29
560	582	2.921912	GCAGCAGCGCAAGTATTTTTCA	60.922	45.455	11.47	0.00	41.68	2.69
561	583	2.658325	CAGCAGCGCAAGTATTTTTCAC	59.342	45.455	11.47	0.00	41.68	3.18
562	584	1.985684	GCAGCGCAAGTATTTTTCACC	59.014	47.619	11.47	0.00	41.68	4.02
563	585	2.606795	GCAGCGCAAGTATTTTTCACCA	60.607	45.455	11.47	0.00	41.68	4.17
564	586	2.979813	CAGCGCAAGTATTTTTCACCAC	59.020	45.455	11.47	0.00	41.68	4.16
565	587	2.030274	AGCGCAAGTATTTTTCACCACC	60.030	45.455	11.47	0.00	41.68	4.61
566	588	2.030274	GCGCAAGTATTTTTCACCACCT	60.030	45.455	0.30	0.00	41.68	4.00
567	589	3.552068	GCGCAAGTATTTTTCACCACCTT	60.552	43.478	0.30	0.00	41.68	3.50
568	590	4.320641	GCGCAAGTATTTTTCACCACCTTA	60.321	41.667	0.30	0.00	41.68	2.69
569	591	5.764131	CGCAAGTATTTTTCACCACCTTAA	58.236	37.500	0.00	0.00	0.00	1.85
570	592	5.856455	CGCAAGTATTTTTCACCACCTTAAG	59.144	40.000	0.00	0.00	0.00	1.85
571	593	5.633601	GCAAGTATTTTTCACCACCTTAAGC	59.366	40.000	0.00	0.00	0.00	3.09
572	594	6.737346	GCAAGTATTTTTCACCACCTTAAGCA	60.737	38.462	0.00	0.00	0.00	3.91
573	595	6.969993	AGTATTTTTCACCACCTTAAGCAA	57.030	33.333	0.00	0.00	0.00	3.91
574	596	7.354751	AGTATTTTTCACCACCTTAAGCAAA	57.645	32.000	0.00	0.00	0.00	3.68
575	597	7.962441	AGTATTTTTCACCACCTTAAGCAAAT	58.038	30.769	0.00	0.00	0.00	2.32
576	598	8.428852	AGTATTTTTCACCACCTTAAGCAAATT	58.571	29.630	0.00	0.00	0.00	1.82
577	599	9.699703	GTATTTTTCACCACCTTAAGCAAATTA	57.300	29.630	0.00	0.00	0.00	1.40
578	600	8.831715	ATTTTTCACCACCTTAAGCAAATTAG	57.168	30.769	0.00	0.00	0.00	1.73
579	601	6.969993	TTTCACCACCTTAAGCAAATTAGT	57.030	33.333	0.00	0.00	0.00	2.24
580	602	6.969993	TTCACCACCTTAAGCAAATTAGTT	57.030	33.333	0.00	0.00	0.00	2.24
581	603	6.325919	TCACCACCTTAAGCAAATTAGTTG	57.674	37.500	0.00	0.00	40.50	3.16
582	604	5.242838	TCACCACCTTAAGCAAATTAGTTGG	59.757	40.000	0.00	0.00	37.73	3.77
583	605	4.526650	ACCACCTTAAGCAAATTAGTTGGG	59.473	41.667	0.00	0.00	37.73	4.12
584	606	4.770010	CCACCTTAAGCAAATTAGTTGGGA	59.230	41.667	0.00	0.00	37.73	4.37
585	607	5.105756	CCACCTTAAGCAAATTAGTTGGGAG	60.106	44.000	0.00	0.00	37.73	4.30
586	608	5.710099	CACCTTAAGCAAATTAGTTGGGAGA	59.290	40.000	0.00	0.00	37.73	3.71
587	609	6.208599	CACCTTAAGCAAATTAGTTGGGAGAA	59.791	38.462	0.00	0.00	37.73	2.87
588	610	6.780522	ACCTTAAGCAAATTAGTTGGGAGAAA	59.219	34.615	0.00	0.00	37.73	2.52
589	611	7.289084	ACCTTAAGCAAATTAGTTGGGAGAAAA	59.711	33.333	0.00	0.00	37.73	2.29
590	612	7.814587	CCTTAAGCAAATTAGTTGGGAGAAAAG	59.185	37.037	0.00	0.00	37.73	2.27
591	613	5.728637	AGCAAATTAGTTGGGAGAAAAGG	57.271	39.130	0.00	0.00	37.73	3.11
592	614	4.528206	AGCAAATTAGTTGGGAGAAAAGGG	59.472	41.667	0.00	0.00	37.73	3.95
593	615	4.526650	GCAAATTAGTTGGGAGAAAAGGGA	59.473	41.667	0.00	0.00	37.73	4.20
594	616	5.566826	GCAAATTAGTTGGGAGAAAAGGGAC	60.567	44.000	0.00	0.00	37.73	4.46
595	617	5.333566	AATTAGTTGGGAGAAAAGGGACA	57.666	39.130	0.00	0.00	0.00	4.02
596	618	5.536497	ATTAGTTGGGAGAAAAGGGACAT	57.464	39.130	0.00	0.00	0.00	3.06
597	619	6.652205	ATTAGTTGGGAGAAAAGGGACATA	57.348	37.500	0.00	0.00	0.00	2.29
598	620	6.652205	TTAGTTGGGAGAAAAGGGACATAT	57.348	37.500	0.00	0.00	0.00	1.78
599	621	5.536497	AGTTGGGAGAAAAGGGACATATT	57.464	39.130	0.00	0.00	0.00	1.28
600	622	5.903923	AGTTGGGAGAAAAGGGACATATTT	58.096	37.500	0.00	0.00	0.00	1.40
601	623	5.716703	AGTTGGGAGAAAAGGGACATATTTG	59.283	40.000	0.00	0.00	0.00	2.32
602	624	4.023291	TGGGAGAAAAGGGACATATTTGC	58.977	43.478	0.00	0.00	0.00	3.68
603	625	4.023291	GGGAGAAAAGGGACATATTTGCA	58.977	43.478	0.00	0.00	0.00	4.08
604	626	4.142160	GGGAGAAAAGGGACATATTTGCAC	60.142	45.833	0.00	0.00	0.00	4.57
605	627	4.462483	GGAGAAAAGGGACATATTTGCACA	59.538	41.667	0.00	0.00	0.00	4.57
606	628	5.127682	GGAGAAAAGGGACATATTTGCACAT	59.872	40.000	0.00	0.00	0.00	3.21
607	629	6.321181	GGAGAAAAGGGACATATTTGCACATA	59.679	38.462	0.00	0.00	0.00	2.29
608	630	7.338800	AGAAAAGGGACATATTTGCACATAG	57.661	36.000	0.00	0.00	0.00	2.23
609	631	6.891908	AGAAAAGGGACATATTTGCACATAGT	59.108	34.615	0.00	0.00	0.00	2.12
610	632	7.397192	AGAAAAGGGACATATTTGCACATAGTT	59.603	33.333	0.00	0.00	0.00	2.24
611	633	6.455360	AAGGGACATATTTGCACATAGTTG	57.545	37.500	0.00	0.00	0.00	3.16
612	634	5.509498	AGGGACATATTTGCACATAGTTGT	58.491	37.500	0.00	0.00	36.15	3.32
644	666	6.861065	TTTTTAGACAATCTCGTGAAGCTT	57.139	33.333	0.00	0.00	0.00	3.74
645	667	6.861065	TTTTAGACAATCTCGTGAAGCTTT	57.139	33.333	0.00	0.00	0.00	3.51
646	668	7.956420	TTTTAGACAATCTCGTGAAGCTTTA	57.044	32.000	0.00	0.00	0.00	1.85
647	669	8.547967	TTTTAGACAATCTCGTGAAGCTTTAT	57.452	30.769	0.00	0.00	0.00	1.40
648	670	8.547967	TTTAGACAATCTCGTGAAGCTTTATT	57.452	30.769	0.00	0.00	0.00	1.40
649	671	8.547967	TTAGACAATCTCGTGAAGCTTTATTT	57.452	30.769	0.00	0.00	0.00	1.40
650	672	9.647797	TTAGACAATCTCGTGAAGCTTTATTTA	57.352	29.630	0.00	0.00	0.00	1.40
651	673	8.547967	AGACAATCTCGTGAAGCTTTATTTAA	57.452	30.769	0.00	0.00	0.00	1.52
652	674	8.443937	AGACAATCTCGTGAAGCTTTATTTAAC	58.556	33.333	0.00	0.00	0.00	2.01
653	675	8.324163	ACAATCTCGTGAAGCTTTATTTAACT	57.676	30.769	0.00	0.00	0.00	2.24
654	676	8.443937	ACAATCTCGTGAAGCTTTATTTAACTC	58.556	33.333	0.00	0.00	0.00	3.01
655	677	6.627690	TCTCGTGAAGCTTTATTTAACTCG	57.372	37.500	0.00	0.00	0.00	4.18
656	678	6.154445	TCTCGTGAAGCTTTATTTAACTCGT	58.846	36.000	0.00	0.00	0.00	4.18
657	679	6.307318	TCTCGTGAAGCTTTATTTAACTCGTC	59.693	38.462	0.00	0.00	0.00	4.20
658	680	5.921976	TCGTGAAGCTTTATTTAACTCGTCA	59.078	36.000	0.00	0.00	0.00	4.35
659	681	6.007677	CGTGAAGCTTTATTTAACTCGTCAC	58.992	40.000	0.00	0.00	0.00	3.67
660	682	6.346279	CGTGAAGCTTTATTTAACTCGTCACA	60.346	38.462	0.00	0.00	33.02	3.58
661	683	6.790825	GTGAAGCTTTATTTAACTCGTCACAC	59.209	38.462	0.00	0.00	33.53	3.82
662	684	6.480651	TGAAGCTTTATTTAACTCGTCACACA	59.519	34.615	0.00	0.00	0.00	3.72
663	685	6.467723	AGCTTTATTTAACTCGTCACACAG	57.532	37.500	0.00	0.00	0.00	3.66
664	686	5.408604	AGCTTTATTTAACTCGTCACACAGG	59.591	40.000	0.00	0.00	0.00	4.00
665	687	5.390567	GCTTTATTTAACTCGTCACACAGGG	60.391	44.000	0.00	0.00	0.00	4.45
666	688	5.471556	TTATTTAACTCGTCACACAGGGA	57.528	39.130	0.00	0.00	0.00	4.20
667	689	2.806608	TTAACTCGTCACACAGGGAC	57.193	50.000	0.00	0.00	0.00	4.46
673	695	3.980583	GTCACACAGGGACGAAAGA	57.019	52.632	0.00	0.00	0.00	2.52
674	696	2.457366	GTCACACAGGGACGAAAGAT	57.543	50.000	0.00	0.00	0.00	2.40
675	697	3.587797	GTCACACAGGGACGAAAGATA	57.412	47.619	0.00	0.00	0.00	1.98
676	698	3.512680	GTCACACAGGGACGAAAGATAG	58.487	50.000	0.00	0.00	0.00	2.08
677	699	3.192844	GTCACACAGGGACGAAAGATAGA	59.807	47.826	0.00	0.00	0.00	1.98
678	700	4.023980	TCACACAGGGACGAAAGATAGAT	58.976	43.478	0.00	0.00	0.00	1.98
679	701	4.098044	TCACACAGGGACGAAAGATAGATC	59.902	45.833	0.00	0.00	0.00	2.75
680	702	3.066900	ACACAGGGACGAAAGATAGATCG	59.933	47.826	0.00	0.00	44.33	3.69
681	703	2.034812	ACAGGGACGAAAGATAGATCGC	59.965	50.000	0.00	0.00	42.61	4.58
682	704	1.614413	AGGGACGAAAGATAGATCGCC	59.386	52.381	0.00	0.00	42.61	5.54
683	705	1.614413	GGGACGAAAGATAGATCGCCT	59.386	52.381	0.00	0.00	42.61	5.52
684	706	2.608261	GGGACGAAAGATAGATCGCCTG	60.608	54.545	0.00	0.00	42.61	4.85
685	707	2.608261	GGACGAAAGATAGATCGCCTGG	60.608	54.545	0.00	0.00	42.61	4.45
686	708	1.341531	ACGAAAGATAGATCGCCTGGG	59.658	52.381	0.00	0.00	42.61	4.45
687	709	1.341531	CGAAAGATAGATCGCCTGGGT	59.658	52.381	0.00	0.00	31.71	4.51
688	710	2.224066	CGAAAGATAGATCGCCTGGGTT	60.224	50.000	0.00	0.00	31.71	4.11
689	711	2.918712	AAGATAGATCGCCTGGGTTG	57.081	50.000	0.00	0.00	0.00	3.77
690	712	0.394565	AGATAGATCGCCTGGGTTGC	59.605	55.000	0.00	0.00	0.00	4.17
691	713	0.603975	GATAGATCGCCTGGGTTGCC	60.604	60.000	0.00	0.00	0.00	4.52
692	714	1.056700	ATAGATCGCCTGGGTTGCCT	61.057	55.000	0.00	0.00	0.00	4.75
693	715	0.397957	TAGATCGCCTGGGTTGCCTA	60.398	55.000	0.00	0.00	0.00	3.93
694	716	1.223487	GATCGCCTGGGTTGCCTAA	59.777	57.895	0.00	0.00	0.00	2.69
695	717	1.077716	ATCGCCTGGGTTGCCTAAC	60.078	57.895	0.00	0.00	36.04	2.34
704	726	1.946267	GTTGCCTAACCACACACGG	59.054	57.895	0.00	0.00	0.00	4.94
705	727	1.894756	TTGCCTAACCACACACGGC	60.895	57.895	0.00	0.00	41.06	5.68
706	728	3.419759	GCCTAACCACACACGGCG	61.420	66.667	4.80	4.80	0.00	6.46
707	729	2.740826	CCTAACCACACACGGCGG	60.741	66.667	13.24	2.35	0.00	6.13
708	730	3.419759	CTAACCACACACGGCGGC	61.420	66.667	13.24	0.00	0.00	6.53
709	731	4.992511	TAACCACACACGGCGGCC	62.993	66.667	13.24	9.54	0.00	6.13
719	741	3.679738	CGGCGGCCAACACCAAAT	61.680	61.111	20.71	0.00	0.00	2.32
720	742	2.048316	GGCGGCCAACACCAAATG	60.048	61.111	15.62	0.00	0.00	2.32
721	743	2.569354	GGCGGCCAACACCAAATGA	61.569	57.895	15.62	0.00	0.00	2.57
722	744	1.365633	GCGGCCAACACCAAATGAA	59.634	52.632	2.24	0.00	0.00	2.57
723	745	0.249657	GCGGCCAACACCAAATGAAA	60.250	50.000	2.24	0.00	0.00	2.69
724	746	1.782044	CGGCCAACACCAAATGAAAG	58.218	50.000	2.24	0.00	0.00	2.62
725	747	1.605202	CGGCCAACACCAAATGAAAGG	60.605	52.381	2.24	0.00	0.00	3.11
726	748	1.691434	GGCCAACACCAAATGAAAGGA	59.309	47.619	0.00	0.00	0.00	3.36
727	749	2.547855	GGCCAACACCAAATGAAAGGAC	60.548	50.000	0.00	0.00	0.00	3.85
728	750	2.102252	GCCAACACCAAATGAAAGGACA	59.898	45.455	0.00	0.00	0.00	4.02
729	751	3.244181	GCCAACACCAAATGAAAGGACAT	60.244	43.478	0.00	0.00	0.00	3.06
730	752	4.021544	GCCAACACCAAATGAAAGGACATA	60.022	41.667	0.00	0.00	0.00	2.29
731	753	5.469479	CCAACACCAAATGAAAGGACATAC	58.531	41.667	0.00	0.00	0.00	2.39
732	754	5.010516	CCAACACCAAATGAAAGGACATACA	59.989	40.000	0.00	0.00	0.00	2.29
733	755	6.295236	CCAACACCAAATGAAAGGACATACAT	60.295	38.462	0.00	0.00	0.00	2.29
734	756	6.515272	ACACCAAATGAAAGGACATACATC	57.485	37.500	0.00	0.00	0.00	3.06
735	757	5.123820	ACACCAAATGAAAGGACATACATCG	59.876	40.000	0.00	0.00	0.00	3.84
736	758	4.096382	ACCAAATGAAAGGACATACATCGC	59.904	41.667	0.00	0.00	0.00	4.58
737	759	4.336433	CCAAATGAAAGGACATACATCGCT	59.664	41.667	0.00	0.00	0.00	4.93
738	760	5.527214	CCAAATGAAAGGACATACATCGCTA	59.473	40.000	0.00	0.00	0.00	4.26
739	761	6.038161	CCAAATGAAAGGACATACATCGCTAA	59.962	38.462	0.00	0.00	0.00	3.09
740	762	7.415095	CCAAATGAAAGGACATACATCGCTAAA	60.415	37.037	0.00	0.00	0.00	1.85
741	763	7.807977	AATGAAAGGACATACATCGCTAAAT	57.192	32.000	0.00	0.00	0.00	1.40
742	764	7.807977	ATGAAAGGACATACATCGCTAAATT	57.192	32.000	0.00	0.00	0.00	1.82
743	765	7.015226	TGAAAGGACATACATCGCTAAATTG	57.985	36.000	0.00	0.00	0.00	2.32
744	766	6.597672	TGAAAGGACATACATCGCTAAATTGT	59.402	34.615	0.00	0.00	0.00	2.71
745	767	5.991328	AGGACATACATCGCTAAATTGTG	57.009	39.130	0.00	0.00	0.00	3.33
746	768	5.670485	AGGACATACATCGCTAAATTGTGA	58.330	37.500	0.00	0.00	0.00	3.58
747	769	5.755375	AGGACATACATCGCTAAATTGTGAG	59.245	40.000	0.00	0.00	0.00	3.51
748	770	5.409643	ACATACATCGCTAAATTGTGAGC	57.590	39.130	0.00	0.00	35.24	4.26
749	771	4.273480	ACATACATCGCTAAATTGTGAGCC	59.727	41.667	2.60	0.00	35.13	4.70
750	772	2.991250	ACATCGCTAAATTGTGAGCCT	58.009	42.857	2.60	0.00	35.13	4.58
751	773	2.939103	ACATCGCTAAATTGTGAGCCTC	59.061	45.455	2.60	0.00	35.13	4.70
752	774	2.760634	TCGCTAAATTGTGAGCCTCA	57.239	45.000	0.00	0.00	35.13	3.86
753	775	3.052455	TCGCTAAATTGTGAGCCTCAA	57.948	42.857	0.00	0.00	35.13	3.02
754	776	2.742053	TCGCTAAATTGTGAGCCTCAAC	59.258	45.455	0.00	0.00	35.13	3.18
755	777	2.483877	CGCTAAATTGTGAGCCTCAACA	59.516	45.455	0.00	0.00	35.13	3.33
756	778	3.127548	CGCTAAATTGTGAGCCTCAACAT	59.872	43.478	0.00	0.00	35.13	2.71
757	779	4.379813	CGCTAAATTGTGAGCCTCAACATT	60.380	41.667	0.00	0.00	35.13	2.71
758	780	5.098211	GCTAAATTGTGAGCCTCAACATTC	58.902	41.667	0.00	0.00	32.25	2.67
759	781	3.837213	AATTGTGAGCCTCAACATTCG	57.163	42.857	0.00	0.00	0.00	3.34
760	782	2.542020	TTGTGAGCCTCAACATTCGA	57.458	45.000	0.00	0.00	0.00	3.71
761	783	2.084610	TGTGAGCCTCAACATTCGAG	57.915	50.000	0.00	0.00	0.00	4.04
762	784	0.723981	GTGAGCCTCAACATTCGAGC	59.276	55.000	0.00	0.00	0.00	5.03
763	785	0.610174	TGAGCCTCAACATTCGAGCT	59.390	50.000	0.00	0.00	0.00	4.09
764	786	1.285578	GAGCCTCAACATTCGAGCTC	58.714	55.000	2.73	2.73	31.39	4.09
765	787	0.107945	AGCCTCAACATTCGAGCTCC	60.108	55.000	8.47	0.00	0.00	4.70
766	788	0.107945	GCCTCAACATTCGAGCTCCT	60.108	55.000	8.47	0.00	0.00	3.69
767	789	1.137086	GCCTCAACATTCGAGCTCCTA	59.863	52.381	8.47	0.00	0.00	2.94
768	790	2.418746	GCCTCAACATTCGAGCTCCTAA	60.419	50.000	8.47	3.18	0.00	2.69
769	791	3.861840	CCTCAACATTCGAGCTCCTAAA	58.138	45.455	8.47	0.44	0.00	1.85
770	792	3.619038	CCTCAACATTCGAGCTCCTAAAC	59.381	47.826	8.47	0.00	0.00	2.01
771	793	4.499183	CTCAACATTCGAGCTCCTAAACT	58.501	43.478	8.47	0.00	0.00	2.66
772	794	4.495422	TCAACATTCGAGCTCCTAAACTC	58.505	43.478	8.47	0.00	0.00	3.01
773	795	4.021456	TCAACATTCGAGCTCCTAAACTCA	60.021	41.667	8.47	0.00	32.98	3.41
774	796	4.744795	ACATTCGAGCTCCTAAACTCAT	57.255	40.909	8.47	0.00	32.98	2.90
775	797	4.437239	ACATTCGAGCTCCTAAACTCATG	58.563	43.478	8.47	0.87	32.98	3.07
776	798	4.160439	ACATTCGAGCTCCTAAACTCATGA	59.840	41.667	8.47	0.00	32.98	3.07
777	799	3.784701	TCGAGCTCCTAAACTCATGAC	57.215	47.619	8.47	0.00	32.98	3.06
778	800	3.357203	TCGAGCTCCTAAACTCATGACT	58.643	45.455	8.47	0.00	32.98	3.41
779	801	4.524053	TCGAGCTCCTAAACTCATGACTA	58.476	43.478	8.47	0.00	32.98	2.59
780	802	4.948004	TCGAGCTCCTAAACTCATGACTAA	59.052	41.667	8.47	0.00	32.98	2.24
781	803	5.417894	TCGAGCTCCTAAACTCATGACTAAA	59.582	40.000	8.47	0.00	32.98	1.85
782	804	6.071560	TCGAGCTCCTAAACTCATGACTAAAA	60.072	38.462	8.47	0.00	32.98	1.52
783	805	6.590292	CGAGCTCCTAAACTCATGACTAAAAA	59.410	38.462	8.47	0.00	32.98	1.94
805	827	6.524101	AAAACAGGAAACAAACTGCTTAGA	57.476	33.333	0.00	0.00	38.25	2.10
806	828	6.715347	AAACAGGAAACAAACTGCTTAGAT	57.285	33.333	0.00	0.00	38.25	1.98
807	829	5.948992	ACAGGAAACAAACTGCTTAGATC	57.051	39.130	0.00	0.00	38.25	2.75
808	830	4.452455	ACAGGAAACAAACTGCTTAGATCG	59.548	41.667	0.00	0.00	38.25	3.69
809	831	4.690748	CAGGAAACAAACTGCTTAGATCGA	59.309	41.667	0.00	0.00	0.00	3.59
810	832	5.352569	CAGGAAACAAACTGCTTAGATCGAT	59.647	40.000	0.00	0.00	0.00	3.59
811	833	5.582665	AGGAAACAAACTGCTTAGATCGATC	59.417	40.000	17.91	17.91	0.00	3.69
812	834	5.582665	GGAAACAAACTGCTTAGATCGATCT	59.417	40.000	29.58	29.58	40.86	2.75
813	835	6.757010	GGAAACAAACTGCTTAGATCGATCTA	59.243	38.462	27.44	27.44	38.32	1.98
814	836	7.439655	GGAAACAAACTGCTTAGATCGATCTAT	59.560	37.037	30.52	16.03	39.02	1.98
815	837	9.464714	GAAACAAACTGCTTAGATCGATCTATA	57.535	33.333	30.52	20.79	39.02	1.31
816	838	9.817809	AAACAAACTGCTTAGATCGATCTATAA	57.182	29.630	30.52	19.97	39.02	0.98
817	839	9.988815	AACAAACTGCTTAGATCGATCTATAAT	57.011	29.630	30.52	14.99	39.02	1.28
818	840	9.632807	ACAAACTGCTTAGATCGATCTATAATC	57.367	33.333	30.52	20.31	39.02	1.75
819	841	9.853555	CAAACTGCTTAGATCGATCTATAATCT	57.146	33.333	30.52	14.06	39.02	2.40
821	843	8.220755	ACTGCTTAGATCGATCTATAATCTCC	57.779	38.462	30.52	16.01	39.02	3.71
822	844	7.284489	ACTGCTTAGATCGATCTATAATCTCCC	59.716	40.741	30.52	15.19	39.02	4.30
823	845	7.350382	TGCTTAGATCGATCTATAATCTCCCT	58.650	38.462	30.52	8.09	39.02	4.20
824	846	8.495260	TGCTTAGATCGATCTATAATCTCCCTA	58.505	37.037	30.52	14.05	39.02	3.53
825	847	9.344772	GCTTAGATCGATCTATAATCTCCCTAA	57.655	37.037	30.52	15.08	39.02	2.69
832	854	9.290988	TCGATCTATAATCTCCCTAATGATAGC	57.709	37.037	0.00	0.00	0.00	2.97
833	855	9.072375	CGATCTATAATCTCCCTAATGATAGCA	57.928	37.037	0.00	0.00	0.00	3.49
835	857	8.540507	TCTATAATCTCCCTAATGATAGCACC	57.459	38.462	0.00	0.00	0.00	5.01
836	858	8.122481	TCTATAATCTCCCTAATGATAGCACCA	58.878	37.037	0.00	0.00	0.00	4.17
837	859	7.761981	ATAATCTCCCTAATGATAGCACCAT	57.238	36.000	0.00	0.00	0.00	3.55
838	860	8.860517	ATAATCTCCCTAATGATAGCACCATA	57.139	34.615	0.00	0.00	0.00	2.74
839	861	7.761981	AATCTCCCTAATGATAGCACCATAT	57.238	36.000	0.00	0.00	0.00	1.78
840	862	8.860517	AATCTCCCTAATGATAGCACCATATA	57.139	34.615	0.00	0.00	0.00	0.86
841	863	9.457776	AATCTCCCTAATGATAGCACCATATAT	57.542	33.333	0.00	0.00	0.00	0.86
842	864	8.255111	TCTCCCTAATGATAGCACCATATATG	57.745	38.462	5.68	5.68	0.00	1.78
843	865	7.846311	TCTCCCTAATGATAGCACCATATATGT	59.154	37.037	11.73	0.00	0.00	2.29
844	866	7.795047	TCCCTAATGATAGCACCATATATGTG	58.205	38.462	11.73	10.49	0.00	3.21
845	867	7.402941	TCCCTAATGATAGCACCATATATGTGT	59.597	37.037	11.73	6.51	0.00	3.72
846	868	8.704668	CCCTAATGATAGCACCATATATGTGTA	58.295	37.037	11.73	6.20	0.00	2.90
847	869	9.755804	CCTAATGATAGCACCATATATGTGTAG	57.244	37.037	11.73	0.00	0.00	2.74
848	870	9.755804	CTAATGATAGCACCATATATGTGTAGG	57.244	37.037	11.73	0.00	0.00	3.18
849	871	7.739995	ATGATAGCACCATATATGTGTAGGT	57.260	36.000	11.73	10.77	0.00	3.08
850	872	8.838649	ATGATAGCACCATATATGTGTAGGTA	57.161	34.615	11.73	12.11	0.00	3.08
851	873	8.838649	TGATAGCACCATATATGTGTAGGTAT	57.161	34.615	11.73	15.02	0.00	2.73
852	874	8.695456	TGATAGCACCATATATGTGTAGGTATG	58.305	37.037	11.73	0.00	0.00	2.39
853	875	8.838649	ATAGCACCATATATGTGTAGGTATGA	57.161	34.615	11.73	0.00	0.00	2.15
854	876	7.175347	AGCACCATATATGTGTAGGTATGAG	57.825	40.000	11.73	0.00	0.00	2.90
855	877	6.726299	AGCACCATATATGTGTAGGTATGAGT	59.274	38.462	11.73	0.00	0.00	3.41
856	878	7.893833	AGCACCATATATGTGTAGGTATGAGTA	59.106	37.037	11.73	0.00	0.00	2.59
857	879	7.974501	GCACCATATATGTGTAGGTATGAGTAC	59.025	40.741	11.73	0.00	0.00	2.73
858	880	9.020731	CACCATATATGTGTAGGTATGAGTACA	57.979	37.037	11.73	0.00	32.25	2.90
859	881	9.244292	ACCATATATGTGTAGGTATGAGTACAG	57.756	37.037	11.73	0.00	32.25	2.74
860	882	9.462606	CCATATATGTGTAGGTATGAGTACAGA	57.537	37.037	11.73	0.00	32.25	3.41
863	885	6.902771	ATGTGTAGGTATGAGTACAGATCC	57.097	41.667	0.00	0.00	29.55	3.36
864	886	5.762279	TGTGTAGGTATGAGTACAGATCCA	58.238	41.667	0.00	0.00	32.25	3.41
865	887	6.373759	TGTGTAGGTATGAGTACAGATCCAT	58.626	40.000	0.00	0.00	32.25	3.41
866	888	6.490381	TGTGTAGGTATGAGTACAGATCCATC	59.510	42.308	0.00	0.00	32.25	3.51
867	889	6.010850	TGTAGGTATGAGTACAGATCCATCC	58.989	44.000	0.00	0.00	32.25	3.51
868	890	5.346782	AGGTATGAGTACAGATCCATCCT	57.653	43.478	0.00	0.00	32.25	3.24
869	891	5.329399	AGGTATGAGTACAGATCCATCCTC	58.671	45.833	0.00	0.00	32.25	3.71
870	892	5.075761	AGGTATGAGTACAGATCCATCCTCT	59.924	44.000	0.00	0.00	32.25	3.69
871	893	5.184864	GGTATGAGTACAGATCCATCCTCTG	59.815	48.000	0.00	0.00	44.60	3.35
872	894	7.752515	GGTATGAGTACAGATCCATCCTCTGG	61.753	50.000	0.00	0.00	43.58	3.86
873	895	9.821765	GGTATGAGTACAGATCCATCCTCTGGA	62.822	48.148	0.00	0.00	44.22	3.86
882	904	1.964552	CATCCTCTGGAATCTGTGGC	58.035	55.000	0.00	0.00	34.34	5.01
883	905	0.467384	ATCCTCTGGAATCTGTGGCG	59.533	55.000	0.00	0.00	34.34	5.69
884	906	0.904865	TCCTCTGGAATCTGTGGCGT	60.905	55.000	0.00	0.00	0.00	5.68
885	907	0.824109	CCTCTGGAATCTGTGGCGTA	59.176	55.000	0.00	0.00	0.00	4.42
886	908	1.414181	CCTCTGGAATCTGTGGCGTAT	59.586	52.381	0.00	0.00	0.00	3.06
887	909	2.628178	CCTCTGGAATCTGTGGCGTATA	59.372	50.000	0.00	0.00	0.00	1.47
888	910	3.259374	CCTCTGGAATCTGTGGCGTATAT	59.741	47.826	0.00	0.00	0.00	0.86
889	911	4.240888	CTCTGGAATCTGTGGCGTATATG	58.759	47.826	0.00	0.00	0.00	1.78
890	912	3.006859	TCTGGAATCTGTGGCGTATATGG	59.993	47.826	0.00	0.00	0.00	2.74
891	913	2.076863	GGAATCTGTGGCGTATATGGC	58.923	52.381	11.47	11.47	0.00	4.40
892	914	2.289694	GGAATCTGTGGCGTATATGGCT	60.290	50.000	18.35	0.00	35.06	4.75
893	915	2.751166	ATCTGTGGCGTATATGGCTC	57.249	50.000	18.35	15.23	35.06	4.70
894	916	1.408969	TCTGTGGCGTATATGGCTCA	58.591	50.000	18.35	18.55	36.62	4.26
895	917	1.970640	TCTGTGGCGTATATGGCTCAT	59.029	47.619	19.72	0.00	37.30	2.90
896	918	2.029020	TCTGTGGCGTATATGGCTCATC	60.029	50.000	19.72	9.17	37.30	2.92
897	919	1.001974	TGTGGCGTATATGGCTCATCC	59.998	52.381	18.35	0.00	33.70	3.51
905	927	4.424711	TGGCTCATCCAACGGCCC	62.425	66.667	0.00	0.00	43.21	5.80
906	928	4.424711	GGCTCATCCAACGGCCCA	62.425	66.667	0.00	0.00	38.77	5.36
907	929	3.134127	GCTCATCCAACGGCCCAC	61.134	66.667	0.00	0.00	0.00	4.61
908	930	2.671070	CTCATCCAACGGCCCACT	59.329	61.111	0.00	0.00	0.00	4.00
909	931	1.904771	CTCATCCAACGGCCCACTA	59.095	57.895	0.00	0.00	0.00	2.74
910	932	0.462047	CTCATCCAACGGCCCACTAC	60.462	60.000	0.00	0.00	0.00	2.73
911	933	1.195442	TCATCCAACGGCCCACTACA	61.195	55.000	0.00	0.00	0.00	2.74
912	934	0.744414	CATCCAACGGCCCACTACAG	60.744	60.000	0.00	0.00	0.00	2.74
913	935	2.536997	ATCCAACGGCCCACTACAGC	62.537	60.000	0.00	0.00	0.00	4.40
914	936	2.347490	CAACGGCCCACTACAGCT	59.653	61.111	0.00	0.00	0.00	4.24
915	937	1.741770	CAACGGCCCACTACAGCTC	60.742	63.158	0.00	0.00	0.00	4.09
916	938	1.913762	AACGGCCCACTACAGCTCT	60.914	57.895	0.00	0.00	0.00	4.09
917	939	2.172483	AACGGCCCACTACAGCTCTG	62.172	60.000	0.00	0.00	0.00	3.35
918	940	2.586792	GGCCCACTACAGCTCTGG	59.413	66.667	0.00	0.00	34.19	3.86
919	941	2.124942	GCCCACTACAGCTCTGGC	60.125	66.667	1.66	0.00	39.06	4.85
929	951	3.993535	GCTCTGGCTGGGAACAAG	58.006	61.111	0.00	0.00	42.06	3.16
930	952	2.338785	GCTCTGGCTGGGAACAAGC	61.339	63.158	0.00	0.00	42.06	4.01
946	968	4.762289	ACAAGCCCTGTTTCTCTATAGG	57.238	45.455	0.00	0.00	32.99	2.57
947	969	4.362677	ACAAGCCCTGTTTCTCTATAGGA	58.637	43.478	0.00	0.00	32.99	2.94
948	970	4.407296	ACAAGCCCTGTTTCTCTATAGGAG	59.593	45.833	0.00	0.00	38.03	3.69
949	971	4.273300	AGCCCTGTTTCTCTATAGGAGT	57.727	45.455	0.00	0.00	42.40	3.85
950	972	5.405063	AGCCCTGTTTCTCTATAGGAGTA	57.595	43.478	0.00	0.00	42.40	2.59
951	973	5.141910	AGCCCTGTTTCTCTATAGGAGTAC	58.858	45.833	0.00	0.00	42.40	2.73
952	974	5.103430	AGCCCTGTTTCTCTATAGGAGTACT	60.103	44.000	0.00	0.00	42.40	2.73
953	975	6.102910	AGCCCTGTTTCTCTATAGGAGTACTA	59.897	42.308	0.00	0.00	42.40	1.82
954	976	6.431852	GCCCTGTTTCTCTATAGGAGTACTAG	59.568	46.154	0.00	0.00	42.40	2.57
955	977	7.519927	CCCTGTTTCTCTATAGGAGTACTAGT	58.480	42.308	0.00	0.00	42.40	2.57
956	978	7.662669	CCCTGTTTCTCTATAGGAGTACTAGTC	59.337	44.444	0.00	0.00	42.40	2.59
957	979	8.434392	CCTGTTTCTCTATAGGAGTACTAGTCT	58.566	40.741	0.00	0.00	42.40	3.24
958	980	9.485206	CTGTTTCTCTATAGGAGTACTAGTCTC	57.515	40.741	0.00	6.23	42.40	3.36
963	985	3.418022	GGAGTACTAGTCTCCCCCG	57.582	63.158	21.61	0.00	43.90	5.73
964	986	0.178995	GGAGTACTAGTCTCCCCCGG	60.179	65.000	21.61	0.00	43.90	5.73
965	987	0.822944	GAGTACTAGTCTCCCCCGGC	60.823	65.000	0.00	0.00	0.00	6.13
966	988	1.831726	GTACTAGTCTCCCCCGGCC	60.832	68.421	0.00	0.00	0.00	6.13
967	989	3.426309	TACTAGTCTCCCCCGGCCG	62.426	68.421	21.04	21.04	0.00	6.13
1038	1060	2.452813	CCGGAAGAACATCGCACCG	61.453	63.158	0.00	0.00	40.03	4.94
1058	1086	4.678743	AGGCCTTGGGTTTCCGGC	62.679	66.667	0.00	0.00	38.40	6.13
1124	1156	3.823330	GAGCACGACGTCCCCGAT	61.823	66.667	10.58	0.00	37.88	4.18
1130	1162	2.893398	GACGTCCCCGATGAGCTT	59.107	61.111	3.51	0.00	37.88	3.74
1155	1187	1.893786	CTAGTGTTCCTGCGCCTCT	59.106	57.895	4.18	0.00	0.00	3.69
1406	1445	2.044252	CTCGAGTTCCTCCCGGGA	60.044	66.667	25.06	25.06	43.41	5.14
1473	1512	1.954146	GTCCTGAACAAGTGCGCGA	60.954	57.895	12.10	0.00	0.00	5.87
1530	1590	4.063967	CGCGGTGCTACAGGGTGA	62.064	66.667	0.00	0.00	0.00	4.02
1977	2037	3.963129	AGAGATCTCAAGGTCTTCGTCT	58.037	45.455	24.39	0.00	0.00	4.18
1991	2051	2.010145	TCGTCTTCATACAAGGCAGC	57.990	50.000	0.00	0.00	0.00	5.25
2054	2114	1.079127	CGGCGAGGTTCAAGGTCAT	60.079	57.895	0.00	0.00	0.00	3.06
2271	3584	1.228552	TTGCCCTGAAGCCTGAACC	60.229	57.895	0.00	0.00	0.00	3.62
2306	3619	3.181440	TGGTGCTCTTTCCTCAATCTTGT	60.181	43.478	0.00	0.00	0.00	3.16
2327	3640	4.342378	TGTGCTGATTCCCATCTACTAGTC	59.658	45.833	0.00	0.00	0.00	2.59
2338	3651	5.303589	CCCATCTACTAGTCCCGTGAATTTA	59.696	44.000	0.00	0.00	0.00	1.40
2348	3661	7.571080	AGTCCCGTGAATTTAAGTGTTTTAA	57.429	32.000	0.00	0.00	0.00	1.52
2349	3662	8.173542	AGTCCCGTGAATTTAAGTGTTTTAAT	57.826	30.769	0.00	0.00	0.00	1.40
2350	3663	8.635328	AGTCCCGTGAATTTAAGTGTTTTAATT	58.365	29.630	0.00	0.00	30.55	1.40
2351	3664	8.696175	GTCCCGTGAATTTAAGTGTTTTAATTG	58.304	33.333	0.00	0.00	28.68	2.32
2353	3666	9.036671	CCCGTGAATTTAAGTGTTTTAATTGTT	57.963	29.630	0.00	0.00	28.68	2.83
2375	3688	9.921637	TTGTTTTCTAGTGTCAAAAATGTTCTT	57.078	25.926	0.00	0.00	0.00	2.52
2392	3705	8.904099	AATGTTCTTATATTTTAGGACGGAGG	57.096	34.615	0.00	0.00	0.00	4.30
2393	3706	7.664552	TGTTCTTATATTTTAGGACGGAGGA	57.335	36.000	0.00	0.00	0.00	3.71
2488	3801	7.488322	AGTATCTCATCAACTACTGAAGCTTC	58.512	38.462	19.89	19.89	37.67	3.86
2497	3810	1.517242	ACTGAAGCTTCTTTGCCTCG	58.483	50.000	26.09	7.73	0.00	4.63
2722	4053	3.446161	AGTACATACGACCAAGCTTAGCA	59.554	43.478	7.07	0.00	0.00	3.49
2769	4100	4.804139	CCTACGTCCACAGTACATGATTTC	59.196	45.833	0.00	0.00	0.00	2.17
2786	4117	4.218200	TGATTTCATGTTGCGAGAACCATT	59.782	37.500	0.00	0.00	0.00	3.16
2865	4196	1.606531	GCAGGTCAAGAGCCTCCAT	59.393	57.895	0.00	0.00	33.31	3.41
2884	4215	3.327172	CCATCAGTAGCTGGGAATCAGAT	59.673	47.826	0.00	0.00	46.18	2.90
2890	4221	3.853355	AGCTGGGAATCAGATTCGAAT	57.147	42.857	11.20	11.20	46.18	3.34
2892	4223	4.892433	AGCTGGGAATCAGATTCGAATAG	58.108	43.478	11.38	7.18	46.18	1.73
2900	4231	1.068588	CAGATTCGAATAGCACCCGGA	59.931	52.381	11.38	0.00	0.00	5.14
2902	4233	2.028930	AGATTCGAATAGCACCCGGATC	60.029	50.000	11.38	0.00	38.29	3.36
2922	4253	0.183492	AGTCCCAGTTCAGCAGCAAA	59.817	50.000	0.00	0.00	0.00	3.68
3082	4425	7.386299	GCTCCATCTACGTTTATCTTGATCATT	59.614	37.037	0.00	0.00	0.00	2.57
3112	4455	1.608717	GCGGTCTCCATCTGTCCAGT	61.609	60.000	0.00	0.00	0.00	4.00
3115	4458	1.561643	GTCTCCATCTGTCCAGTCCA	58.438	55.000	0.00	0.00	0.00	4.02
3166	4509	4.694509	GCTTCAGCATACTCCATTCCATAG	59.305	45.833	0.00	0.00	41.59	2.23
3190	4533	2.778679	GCACGCCTTACAAGCTCG	59.221	61.111	0.00	0.00	0.00	5.03
3223	4566	1.001503	CAGCTCCCCCTCTCTGAGT	59.998	63.158	4.32	0.00	0.00	3.41
3261	4604	2.350895	CATCCACCAGGCCGTCAA	59.649	61.111	0.00	0.00	33.74	3.18
3275	4618	2.022195	CCGTCAAGATTAGGACTCGGA	58.978	52.381	0.00	0.00	39.17	4.55
3319	4662	6.151480	ACATGAAATCAAGCATCACATGTACA	59.849	34.615	0.00	0.00	42.78	2.90
3339	4682	6.545666	TGTACAGATGTGATGTTTTCCAACTT	59.454	34.615	0.00	0.00	33.58	2.66
3347	4690	4.959210	TGATGTTTTCCAACTTTTCCCTGA	59.041	37.500	0.00	0.00	33.58	3.86
3348	4691	4.729227	TGTTTTCCAACTTTTCCCTGAC	57.271	40.909	0.00	0.00	33.58	3.51

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
53	54	1.598701	GCTCAAACCTGCCACATCCC	61.599	60.000	0.00	0.00	0.00	3.85
63	64	2.091885	TCCAAACCTTCTGCTCAAACCT	60.092	45.455	0.00	0.00	0.00	3.50
96	97	1.709147	CTGATTTGAAGCGAGGGCGG	61.709	60.000	0.00	0.00	46.35	6.13
107	108	0.608035	GCGGGGTTGGACTGATTTGA	60.608	55.000	0.00	0.00	0.00	2.69
169	170	0.320160	GGACCGTAATATCCACCGCC	60.320	60.000	0.00	0.00	34.87	6.13
207	208	3.035727	TTTTTCCCGCCAGTTCGC	58.964	55.556	0.00	0.00	0.00	4.70
234	236	2.003548	AGAGCCACTTCCCATCCCC	61.004	63.158	0.00	0.00	0.00	4.81
235	237	1.225704	CAGAGCCACTTCCCATCCC	59.774	63.158	0.00	0.00	0.00	3.85
236	238	0.842635	ATCAGAGCCACTTCCCATCC	59.157	55.000	0.00	0.00	0.00	3.51
237	239	2.725221	AATCAGAGCCACTTCCCATC	57.275	50.000	0.00	0.00	0.00	3.51
239	241	1.559682	GGTAATCAGAGCCACTTCCCA	59.440	52.381	0.00	0.00	0.00	4.37
308	310	3.964031	AGCTGAACTCGATCTATTTCCCT	59.036	43.478	0.00	0.00	0.00	4.20
339	341	6.381420	TCCTATACCTCACCTTCTTCTTTCTG	59.619	42.308	0.00	0.00	0.00	3.02
360	362	4.727332	TCTGTATCTCACCTCCTTCTCCTA	59.273	45.833	0.00	0.00	0.00	2.94
403	408	2.872245	AGGCATGCGTGTATTGTGATAC	59.128	45.455	12.95	0.00	38.88	2.24
405	410	1.942657	GAGGCATGCGTGTATTGTGAT	59.057	47.619	19.15	0.00	0.00	3.06
406	411	1.066215	AGAGGCATGCGTGTATTGTGA	60.066	47.619	19.15	0.00	0.00	3.58
431	437	2.317609	GCGTGTGTGTGGTAGGCAG	61.318	63.158	0.00	0.00	0.00	4.85
432	438	2.280524	GCGTGTGTGTGGTAGGCA	60.281	61.111	0.00	0.00	0.00	4.75
433	439	1.890041	TTGCGTGTGTGTGGTAGGC	60.890	57.895	0.00	0.00	0.00	3.93
434	440	0.531974	AGTTGCGTGTGTGTGGTAGG	60.532	55.000	0.00	0.00	0.00	3.18
435	441	0.859232	GAGTTGCGTGTGTGTGGTAG	59.141	55.000	0.00	0.00	0.00	3.18
436	442	0.462375	AGAGTTGCGTGTGTGTGGTA	59.538	50.000	0.00	0.00	0.00	3.25
460	482	1.076485	GCCAGACATGAAGGCCCAT	60.076	57.895	14.15	0.00	42.58	4.00
468	490	0.461548	GATCCACTCGCCAGACATGA	59.538	55.000	0.00	0.00	0.00	3.07
485	507	2.982488	AGTGGACAAGGAAAGAGTGGAT	59.018	45.455	0.00	0.00	0.00	3.41
511	533	7.039434	AGTCTGAGAGAAGAAATGTCACACATA	60.039	37.037	0.00	0.00	37.97	2.29
514	536	5.537188	AGTCTGAGAGAAGAAATGTCACAC	58.463	41.667	0.00	0.00	0.00	3.82
515	537	5.563671	CGAGTCTGAGAGAAGAAATGTCACA	60.564	44.000	0.00	0.00	0.00	3.58
516	538	4.856487	CGAGTCTGAGAGAAGAAATGTCAC	59.144	45.833	0.00	0.00	0.00	3.67
517	539	4.617067	GCGAGTCTGAGAGAAGAAATGTCA	60.617	45.833	0.00	0.00	0.00	3.58
518	540	3.857093	GCGAGTCTGAGAGAAGAAATGTC	59.143	47.826	0.00	0.00	0.00	3.06
519	541	3.256879	TGCGAGTCTGAGAGAAGAAATGT	59.743	43.478	0.00	0.00	0.00	2.71
520	542	3.842820	TGCGAGTCTGAGAGAAGAAATG	58.157	45.455	0.00	0.00	0.00	2.32
521	543	3.675775	GCTGCGAGTCTGAGAGAAGAAAT	60.676	47.826	0.00	0.00	0.00	2.17
522	544	2.352225	GCTGCGAGTCTGAGAGAAGAAA	60.352	50.000	0.00	0.00	0.00	2.52
523	545	1.201181	GCTGCGAGTCTGAGAGAAGAA	59.799	52.381	0.00	0.00	0.00	2.52
524	546	0.808125	GCTGCGAGTCTGAGAGAAGA	59.192	55.000	0.00	0.00	0.00	2.87
525	547	0.525311	TGCTGCGAGTCTGAGAGAAG	59.475	55.000	0.00	0.00	0.00	2.85
526	548	0.525311	CTGCTGCGAGTCTGAGAGAA	59.475	55.000	0.00	0.00	0.00	2.87
527	549	1.932011	GCTGCTGCGAGTCTGAGAGA	61.932	60.000	0.00	0.00	0.00	3.10
528	550	1.516821	GCTGCTGCGAGTCTGAGAG	60.517	63.158	0.00	0.00	0.00	3.20
529	551	2.570706	GCTGCTGCGAGTCTGAGA	59.429	61.111	0.00	0.00	0.00	3.27
539	561	1.650645	GAAAAATACTTGCGCTGCTGC	59.349	47.619	9.73	5.34	0.00	5.25
540	562	2.658325	GTGAAAAATACTTGCGCTGCTG	59.342	45.455	9.73	0.00	0.00	4.41
541	563	2.351738	GGTGAAAAATACTTGCGCTGCT	60.352	45.455	9.73	0.00	0.00	4.24
542	564	1.985684	GGTGAAAAATACTTGCGCTGC	59.014	47.619	9.73	0.00	0.00	5.25
543	565	2.979813	GTGGTGAAAAATACTTGCGCTG	59.020	45.455	9.73	3.92	0.00	5.18
544	566	2.030274	GGTGGTGAAAAATACTTGCGCT	60.030	45.455	9.73	0.00	0.00	5.92
545	567	2.030274	AGGTGGTGAAAAATACTTGCGC	60.030	45.455	0.00	0.00	0.00	6.09
546	568	3.915437	AGGTGGTGAAAAATACTTGCG	57.085	42.857	0.00	0.00	0.00	4.85
547	569	5.633601	GCTTAAGGTGGTGAAAAATACTTGC	59.366	40.000	4.29	0.00	0.00	4.01
548	570	6.744112	TGCTTAAGGTGGTGAAAAATACTTG	58.256	36.000	4.29	0.00	0.00	3.16
549	571	6.969993	TGCTTAAGGTGGTGAAAAATACTT	57.030	33.333	4.29	0.00	0.00	2.24
550	572	6.969993	TTGCTTAAGGTGGTGAAAAATACT	57.030	33.333	4.29	0.00	0.00	2.12
551	573	8.601845	AATTTGCTTAAGGTGGTGAAAAATAC	57.398	30.769	4.29	0.00	0.00	1.89
552	574	9.921637	CTAATTTGCTTAAGGTGGTGAAAAATA	57.078	29.630	4.29	0.00	0.00	1.40
553	575	8.428852	ACTAATTTGCTTAAGGTGGTGAAAAAT	58.571	29.630	4.29	0.00	0.00	1.82
554	576	7.787028	ACTAATTTGCTTAAGGTGGTGAAAAA	58.213	30.769	4.29	0.00	0.00	1.94
555	577	7.354751	ACTAATTTGCTTAAGGTGGTGAAAA	57.645	32.000	4.29	0.00	0.00	2.29
556	578	6.969993	ACTAATTTGCTTAAGGTGGTGAAA	57.030	33.333	4.29	0.00	0.00	2.69
557	579	6.239176	CCAACTAATTTGCTTAAGGTGGTGAA	60.239	38.462	4.29	0.00	33.34	3.18
558	580	5.242838	CCAACTAATTTGCTTAAGGTGGTGA	59.757	40.000	4.29	0.00	33.34	4.02
559	581	5.469479	CCAACTAATTTGCTTAAGGTGGTG	58.531	41.667	4.29	0.00	33.34	4.17
560	582	4.526650	CCCAACTAATTTGCTTAAGGTGGT	59.473	41.667	4.29	0.00	33.34	4.16
561	583	4.770010	TCCCAACTAATTTGCTTAAGGTGG	59.230	41.667	4.29	1.31	33.34	4.61
562	584	5.710099	TCTCCCAACTAATTTGCTTAAGGTG	59.290	40.000	4.29	0.00	33.34	4.00
563	585	5.887754	TCTCCCAACTAATTTGCTTAAGGT	58.112	37.500	4.29	0.00	33.34	3.50
564	586	6.834168	TTCTCCCAACTAATTTGCTTAAGG	57.166	37.500	4.29	0.00	33.34	2.69
565	587	7.814587	CCTTTTCTCCCAACTAATTTGCTTAAG	59.185	37.037	0.00	0.00	33.34	1.85
566	588	7.256154	CCCTTTTCTCCCAACTAATTTGCTTAA	60.256	37.037	0.00	0.00	33.34	1.85
567	589	6.210584	CCCTTTTCTCCCAACTAATTTGCTTA	59.789	38.462	0.00	0.00	33.34	3.09
568	590	5.012046	CCCTTTTCTCCCAACTAATTTGCTT	59.988	40.000	0.00	0.00	33.34	3.91
569	591	4.528206	CCCTTTTCTCCCAACTAATTTGCT	59.472	41.667	0.00	0.00	33.34	3.91
570	592	4.526650	TCCCTTTTCTCCCAACTAATTTGC	59.473	41.667	0.00	0.00	33.34	3.68
571	593	5.538433	TGTCCCTTTTCTCCCAACTAATTTG	59.462	40.000	0.00	0.00	34.63	2.32
572	594	5.711698	TGTCCCTTTTCTCCCAACTAATTT	58.288	37.500	0.00	0.00	0.00	1.82
573	595	5.333566	TGTCCCTTTTCTCCCAACTAATT	57.666	39.130	0.00	0.00	0.00	1.40
574	596	5.536497	ATGTCCCTTTTCTCCCAACTAAT	57.464	39.130	0.00	0.00	0.00	1.73
575	597	6.652205	ATATGTCCCTTTTCTCCCAACTAA	57.348	37.500	0.00	0.00	0.00	2.24
576	598	6.652205	AATATGTCCCTTTTCTCCCAACTA	57.348	37.500	0.00	0.00	0.00	2.24
577	599	5.536497	AATATGTCCCTTTTCTCCCAACT	57.464	39.130	0.00	0.00	0.00	3.16
578	600	5.624509	GCAAATATGTCCCTTTTCTCCCAAC	60.625	44.000	0.00	0.00	0.00	3.77
579	601	4.466015	GCAAATATGTCCCTTTTCTCCCAA	59.534	41.667	0.00	0.00	0.00	4.12
580	602	4.023291	GCAAATATGTCCCTTTTCTCCCA	58.977	43.478	0.00	0.00	0.00	4.37
581	603	4.023291	TGCAAATATGTCCCTTTTCTCCC	58.977	43.478	0.00	0.00	0.00	4.30
582	604	4.462483	TGTGCAAATATGTCCCTTTTCTCC	59.538	41.667	0.00	0.00	0.00	3.71
583	605	5.643379	TGTGCAAATATGTCCCTTTTCTC	57.357	39.130	0.00	0.00	0.00	2.87
584	606	6.891908	ACTATGTGCAAATATGTCCCTTTTCT	59.108	34.615	0.00	0.00	0.00	2.52
585	607	7.100458	ACTATGTGCAAATATGTCCCTTTTC	57.900	36.000	0.00	0.00	0.00	2.29
586	608	7.039082	ACAACTATGTGCAAATATGTCCCTTTT	60.039	33.333	0.00	0.00	38.69	2.27
587	609	6.437162	ACAACTATGTGCAAATATGTCCCTTT	59.563	34.615	0.00	0.00	38.69	3.11
588	610	5.951747	ACAACTATGTGCAAATATGTCCCTT	59.048	36.000	0.00	0.00	38.69	3.95
589	611	5.509498	ACAACTATGTGCAAATATGTCCCT	58.491	37.500	0.00	0.00	38.69	4.20
590	612	5.835113	ACAACTATGTGCAAATATGTCCC	57.165	39.130	0.00	0.00	38.69	4.46
621	643	6.861065	AAGCTTCACGAGATTGTCTAAAAA	57.139	33.333	0.00	0.00	31.56	1.94
622	644	6.861065	AAAGCTTCACGAGATTGTCTAAAA	57.139	33.333	0.00	0.00	33.47	1.52
623	645	8.547967	AATAAAGCTTCACGAGATTGTCTAAA	57.452	30.769	0.00	0.00	33.47	1.85
624	646	8.547967	AAATAAAGCTTCACGAGATTGTCTAA	57.452	30.769	0.00	0.00	33.47	2.10
625	647	9.647797	TTAAATAAAGCTTCACGAGATTGTCTA	57.352	29.630	0.00	0.00	33.47	2.59
626	648	8.443937	GTTAAATAAAGCTTCACGAGATTGTCT	58.556	33.333	0.00	0.00	33.47	3.41
627	649	8.443937	AGTTAAATAAAGCTTCACGAGATTGTC	58.556	33.333	0.00	0.00	33.47	3.18
628	650	8.324163	AGTTAAATAAAGCTTCACGAGATTGT	57.676	30.769	0.00	0.00	33.47	2.71
629	651	7.632515	CGAGTTAAATAAAGCTTCACGAGATTG	59.367	37.037	0.00	0.00	33.47	2.67
630	652	7.331193	ACGAGTTAAATAAAGCTTCACGAGATT	59.669	33.333	0.00	0.00	34.95	2.40
631	653	6.812160	ACGAGTTAAATAAAGCTTCACGAGAT	59.188	34.615	0.00	0.00	0.00	2.75
632	654	6.154445	ACGAGTTAAATAAAGCTTCACGAGA	58.846	36.000	0.00	0.00	0.00	4.04
633	655	6.089016	TGACGAGTTAAATAAAGCTTCACGAG	59.911	38.462	0.00	0.00	0.00	4.18
634	656	5.921976	TGACGAGTTAAATAAAGCTTCACGA	59.078	36.000	0.00	0.00	0.00	4.35
635	657	6.007677	GTGACGAGTTAAATAAAGCTTCACG	58.992	40.000	0.00	0.00	0.00	4.35
636	658	6.790825	GTGTGACGAGTTAAATAAAGCTTCAC	59.209	38.462	0.00	0.00	0.00	3.18
637	659	6.480651	TGTGTGACGAGTTAAATAAAGCTTCA	59.519	34.615	0.00	0.00	0.00	3.02
638	660	6.884187	TGTGTGACGAGTTAAATAAAGCTTC	58.116	36.000	0.00	0.00	0.00	3.86
639	661	6.073222	CCTGTGTGACGAGTTAAATAAAGCTT	60.073	38.462	0.00	0.00	0.00	3.74
640	662	5.408604	CCTGTGTGACGAGTTAAATAAAGCT	59.591	40.000	0.00	0.00	0.00	3.74
641	663	5.390567	CCCTGTGTGACGAGTTAAATAAAGC	60.391	44.000	0.00	0.00	0.00	3.51
642	664	5.929992	TCCCTGTGTGACGAGTTAAATAAAG	59.070	40.000	0.00	0.00	0.00	1.85
643	665	5.697633	GTCCCTGTGTGACGAGTTAAATAAA	59.302	40.000	0.00	0.00	0.00	1.40
644	666	5.232463	GTCCCTGTGTGACGAGTTAAATAA	58.768	41.667	0.00	0.00	0.00	1.40
645	667	4.813027	GTCCCTGTGTGACGAGTTAAATA	58.187	43.478	0.00	0.00	0.00	1.40
646	668	3.660865	GTCCCTGTGTGACGAGTTAAAT	58.339	45.455	0.00	0.00	0.00	1.40
647	669	3.102052	GTCCCTGTGTGACGAGTTAAA	57.898	47.619	0.00	0.00	0.00	1.52
648	670	2.806608	GTCCCTGTGTGACGAGTTAA	57.193	50.000	0.00	0.00	0.00	2.01
655	677	2.457366	ATCTTTCGTCCCTGTGTGAC	57.543	50.000	0.00	0.00	0.00	3.67
656	678	3.427573	TCTATCTTTCGTCCCTGTGTGA	58.572	45.455	0.00	0.00	0.00	3.58
657	679	3.868757	TCTATCTTTCGTCCCTGTGTG	57.131	47.619	0.00	0.00	0.00	3.82
658	680	3.066900	CGATCTATCTTTCGTCCCTGTGT	59.933	47.826	0.00	0.00	0.00	3.72
659	681	3.633235	CGATCTATCTTTCGTCCCTGTG	58.367	50.000	0.00	0.00	0.00	3.66
660	682	2.034812	GCGATCTATCTTTCGTCCCTGT	59.965	50.000	0.00	0.00	37.66	4.00
661	683	2.608261	GGCGATCTATCTTTCGTCCCTG	60.608	54.545	0.00	0.00	37.66	4.45
662	684	1.614413	GGCGATCTATCTTTCGTCCCT	59.386	52.381	0.00	0.00	37.66	4.20
663	685	1.614413	AGGCGATCTATCTTTCGTCCC	59.386	52.381	0.00	0.00	40.70	4.46
664	686	2.608261	CCAGGCGATCTATCTTTCGTCC	60.608	54.545	0.00	0.00	40.70	4.79
665	687	2.608261	CCCAGGCGATCTATCTTTCGTC	60.608	54.545	0.00	0.00	40.14	4.20
666	688	1.341531	CCCAGGCGATCTATCTTTCGT	59.658	52.381	0.00	0.00	37.66	3.85
667	689	1.341531	ACCCAGGCGATCTATCTTTCG	59.658	52.381	0.00	0.00	38.37	3.46
668	690	3.134458	CAACCCAGGCGATCTATCTTTC	58.866	50.000	0.00	0.00	0.00	2.62
669	691	2.746472	GCAACCCAGGCGATCTATCTTT	60.746	50.000	0.00	0.00	0.00	2.52
670	692	1.202698	GCAACCCAGGCGATCTATCTT	60.203	52.381	0.00	0.00	0.00	2.40
671	693	0.394565	GCAACCCAGGCGATCTATCT	59.605	55.000	0.00	0.00	0.00	1.98
672	694	0.603975	GGCAACCCAGGCGATCTATC	60.604	60.000	0.00	0.00	0.00	2.08
673	695	1.056700	AGGCAACCCAGGCGATCTAT	61.057	55.000	0.00	0.00	39.37	1.98
674	696	0.397957	TAGGCAACCCAGGCGATCTA	60.398	55.000	0.00	0.00	39.37	1.98
675	697	1.271840	TTAGGCAACCCAGGCGATCT	61.272	55.000	0.00	0.00	39.37	2.75
676	698	1.095807	GTTAGGCAACCCAGGCGATC	61.096	60.000	0.00	0.00	39.37	3.69
677	699	1.077716	GTTAGGCAACCCAGGCGAT	60.078	57.895	0.00	0.00	39.37	4.58
678	700	2.349755	GTTAGGCAACCCAGGCGA	59.650	61.111	0.00	0.00	39.37	5.54
686	708	1.946267	CCGTGTGTGGTTAGGCAAC	59.054	57.895	0.00	0.00	0.00	4.17
687	709	1.894756	GCCGTGTGTGGTTAGGCAA	60.895	57.895	0.00	0.00	46.48	4.52
688	710	2.281208	GCCGTGTGTGGTTAGGCA	60.281	61.111	0.00	0.00	46.48	4.75
689	711	3.419759	CGCCGTGTGTGGTTAGGC	61.420	66.667	0.00	0.00	44.00	3.93
690	712	2.740826	CCGCCGTGTGTGGTTAGG	60.741	66.667	0.00	0.00	39.95	2.69
691	713	3.419759	GCCGCCGTGTGTGGTTAG	61.420	66.667	0.00	0.00	46.96	2.34
692	714	4.992511	GGCCGCCGTGTGTGGTTA	62.993	66.667	0.00	0.00	46.96	2.85
703	725	2.048316	CATTTGGTGTTGGCCGCC	60.048	61.111	1.04	1.04	44.53	6.13
704	726	0.249657	TTTCATTTGGTGTTGGCCGC	60.250	50.000	0.00	0.00	0.00	6.53
705	727	1.605202	CCTTTCATTTGGTGTTGGCCG	60.605	52.381	0.00	0.00	0.00	6.13
706	728	1.691434	TCCTTTCATTTGGTGTTGGCC	59.309	47.619	0.00	0.00	0.00	5.36
707	729	2.102252	TGTCCTTTCATTTGGTGTTGGC	59.898	45.455	0.00	0.00	0.00	4.52
708	730	4.605640	ATGTCCTTTCATTTGGTGTTGG	57.394	40.909	0.00	0.00	0.00	3.77
709	731	6.083098	TGTATGTCCTTTCATTTGGTGTTG	57.917	37.500	0.00	0.00	0.00	3.33
710	732	6.349280	CGATGTATGTCCTTTCATTTGGTGTT	60.349	38.462	0.00	0.00	0.00	3.32
711	733	5.123820	CGATGTATGTCCTTTCATTTGGTGT	59.876	40.000	0.00	0.00	0.00	4.16
712	734	5.572211	CGATGTATGTCCTTTCATTTGGTG	58.428	41.667	0.00	0.00	0.00	4.17
713	735	4.096382	GCGATGTATGTCCTTTCATTTGGT	59.904	41.667	0.00	0.00	0.00	3.67
714	736	4.336433	AGCGATGTATGTCCTTTCATTTGG	59.664	41.667	0.00	0.00	0.00	3.28
715	737	5.490139	AGCGATGTATGTCCTTTCATTTG	57.510	39.130	0.00	0.00	0.00	2.32
716	738	7.624360	TTTAGCGATGTATGTCCTTTCATTT	57.376	32.000	0.00	0.00	0.00	2.32
717	739	7.807977	ATTTAGCGATGTATGTCCTTTCATT	57.192	32.000	0.00	0.00	0.00	2.57
718	740	7.283127	ACAATTTAGCGATGTATGTCCTTTCAT	59.717	33.333	0.00	0.00	0.00	2.57
719	741	6.597672	ACAATTTAGCGATGTATGTCCTTTCA	59.402	34.615	0.00	0.00	0.00	2.69
720	742	6.907212	CACAATTTAGCGATGTATGTCCTTTC	59.093	38.462	0.00	0.00	0.00	2.62
721	743	6.597672	TCACAATTTAGCGATGTATGTCCTTT	59.402	34.615	0.00	0.00	0.00	3.11
722	744	6.112734	TCACAATTTAGCGATGTATGTCCTT	58.887	36.000	0.00	0.00	0.00	3.36
723	745	5.670485	TCACAATTTAGCGATGTATGTCCT	58.330	37.500	0.00	0.00	0.00	3.85
724	746	5.559035	GCTCACAATTTAGCGATGTATGTCC	60.559	44.000	0.00	0.00	0.00	4.02
725	747	5.435557	GCTCACAATTTAGCGATGTATGTC	58.564	41.667	0.00	0.00	0.00	3.06
726	748	4.273480	GGCTCACAATTTAGCGATGTATGT	59.727	41.667	0.00	0.00	39.71	2.29
727	749	4.512944	AGGCTCACAATTTAGCGATGTATG	59.487	41.667	0.00	0.00	39.71	2.39
728	750	4.708177	AGGCTCACAATTTAGCGATGTAT	58.292	39.130	0.00	0.00	39.71	2.29
729	751	4.119862	GAGGCTCACAATTTAGCGATGTA	58.880	43.478	10.25	0.00	39.71	2.29
730	752	2.939103	GAGGCTCACAATTTAGCGATGT	59.061	45.455	10.25	0.00	39.71	3.06
731	753	2.938451	TGAGGCTCACAATTTAGCGATG	59.062	45.455	14.43	0.00	39.71	3.84
732	754	3.266510	TGAGGCTCACAATTTAGCGAT	57.733	42.857	14.43	0.00	39.71	4.58
733	755	2.742053	GTTGAGGCTCACAATTTAGCGA	59.258	45.455	18.55	0.00	39.71	4.93
734	756	2.483877	TGTTGAGGCTCACAATTTAGCG	59.516	45.455	18.55	0.00	39.71	4.26
735	757	4.708726	ATGTTGAGGCTCACAATTTAGC	57.291	40.909	18.55	0.00	38.03	3.09
736	758	5.122239	TCGAATGTTGAGGCTCACAATTTAG	59.878	40.000	18.55	15.89	0.00	1.85
737	759	5.000591	TCGAATGTTGAGGCTCACAATTTA	58.999	37.500	18.55	9.35	0.00	1.40
738	760	3.820467	TCGAATGTTGAGGCTCACAATTT	59.180	39.130	18.55	10.48	0.00	1.82
739	761	3.411446	TCGAATGTTGAGGCTCACAATT	58.589	40.909	18.55	18.73	0.00	2.32
740	762	3.005554	CTCGAATGTTGAGGCTCACAAT	58.994	45.455	18.55	10.94	0.00	2.71
741	763	2.416747	CTCGAATGTTGAGGCTCACAA	58.583	47.619	18.55	8.84	0.00	3.33
742	764	1.941209	GCTCGAATGTTGAGGCTCACA	60.941	52.381	18.55	18.08	33.99	3.58
743	765	0.723981	GCTCGAATGTTGAGGCTCAC	59.276	55.000	18.55	12.93	33.99	3.51
744	766	0.610174	AGCTCGAATGTTGAGGCTCA	59.390	50.000	14.43	14.43	33.99	4.26
745	767	1.285578	GAGCTCGAATGTTGAGGCTC	58.714	55.000	7.79	7.79	33.99	4.70
746	768	0.107945	GGAGCTCGAATGTTGAGGCT	60.108	55.000	7.83	0.00	33.99	4.58
747	769	0.107945	AGGAGCTCGAATGTTGAGGC	60.108	55.000	7.83	0.00	33.99	4.70
748	770	3.526931	TTAGGAGCTCGAATGTTGAGG	57.473	47.619	7.83	0.00	33.99	3.86
749	771	4.499183	AGTTTAGGAGCTCGAATGTTGAG	58.501	43.478	7.83	0.00	36.53	3.02
750	772	4.021456	TGAGTTTAGGAGCTCGAATGTTGA	60.021	41.667	7.83	0.00	36.04	3.18
751	773	4.245660	TGAGTTTAGGAGCTCGAATGTTG	58.754	43.478	7.83	0.00	36.04	3.33
752	774	4.537135	TGAGTTTAGGAGCTCGAATGTT	57.463	40.909	7.83	0.00	36.04	2.71
753	775	4.160439	TCATGAGTTTAGGAGCTCGAATGT	59.840	41.667	7.83	0.00	36.04	2.71
754	776	4.505922	GTCATGAGTTTAGGAGCTCGAATG	59.494	45.833	7.83	2.96	36.04	2.67
755	777	4.404073	AGTCATGAGTTTAGGAGCTCGAAT	59.596	41.667	7.83	0.00	36.04	3.34
756	778	3.764434	AGTCATGAGTTTAGGAGCTCGAA	59.236	43.478	7.83	1.24	36.04	3.71
757	779	3.357203	AGTCATGAGTTTAGGAGCTCGA	58.643	45.455	7.83	0.00	36.04	4.04
758	780	3.791973	AGTCATGAGTTTAGGAGCTCG	57.208	47.619	7.83	0.00	36.04	5.03
759	781	7.907214	TTTTTAGTCATGAGTTTAGGAGCTC	57.093	36.000	8.68	4.71	34.08	4.09
781	803	6.930731	TCTAAGCAGTTTGTTTCCTGTTTTT	58.069	32.000	0.00	0.00	34.55	1.94
782	804	6.524101	TCTAAGCAGTTTGTTTCCTGTTTT	57.476	33.333	0.00	0.00	34.55	2.43
783	805	6.513393	CGATCTAAGCAGTTTGTTTCCTGTTT	60.513	38.462	0.00	0.00	36.34	2.83
784	806	5.049405	CGATCTAAGCAGTTTGTTTCCTGTT	60.049	40.000	0.00	0.00	0.00	3.16
785	807	4.452455	CGATCTAAGCAGTTTGTTTCCTGT	59.548	41.667	0.00	0.00	0.00	4.00
786	808	4.690748	TCGATCTAAGCAGTTTGTTTCCTG	59.309	41.667	0.00	0.00	0.00	3.86
787	809	4.894784	TCGATCTAAGCAGTTTGTTTCCT	58.105	39.130	0.00	0.00	0.00	3.36
788	810	5.582665	AGATCGATCTAAGCAGTTTGTTTCC	59.417	40.000	26.27	0.00	34.85	3.13
789	811	6.654793	AGATCGATCTAAGCAGTTTGTTTC	57.345	37.500	26.27	0.00	34.85	2.78
790	812	9.817809	TTATAGATCGATCTAAGCAGTTTGTTT	57.182	29.630	32.78	17.39	42.20	2.83
791	813	9.988815	ATTATAGATCGATCTAAGCAGTTTGTT	57.011	29.630	32.78	17.83	42.20	2.83
792	814	9.632807	GATTATAGATCGATCTAAGCAGTTTGT	57.367	33.333	32.78	18.45	42.20	2.83
793	815	9.853555	AGATTATAGATCGATCTAAGCAGTTTG	57.146	33.333	32.78	0.00	42.20	2.93
795	817	8.682710	GGAGATTATAGATCGATCTAAGCAGTT	58.317	37.037	32.78	20.30	42.20	3.16
796	818	7.284489	GGGAGATTATAGATCGATCTAAGCAGT	59.716	40.741	32.78	20.92	42.20	4.40
797	819	7.502226	AGGGAGATTATAGATCGATCTAAGCAG	59.498	40.741	32.78	0.00	42.20	4.24
798	820	7.350382	AGGGAGATTATAGATCGATCTAAGCA	58.650	38.462	32.78	21.54	42.20	3.91
799	821	7.817418	AGGGAGATTATAGATCGATCTAAGC	57.183	40.000	32.78	23.75	42.20	3.09
806	828	9.290988	GCTATCATTAGGGAGATTATAGATCGA	57.709	37.037	0.00	0.00	0.00	3.59
807	829	9.072375	TGCTATCATTAGGGAGATTATAGATCG	57.928	37.037	0.00	0.00	0.00	3.69
809	831	9.153479	GGTGCTATCATTAGGGAGATTATAGAT	57.847	37.037	0.00	0.00	0.00	1.98
810	832	8.122481	TGGTGCTATCATTAGGGAGATTATAGA	58.878	37.037	0.00	0.00	0.00	1.98
811	833	8.311395	TGGTGCTATCATTAGGGAGATTATAG	57.689	38.462	0.00	0.00	0.00	1.31
812	834	8.860517	ATGGTGCTATCATTAGGGAGATTATA	57.139	34.615	0.00	0.00	0.00	0.98
813	835	7.761981	ATGGTGCTATCATTAGGGAGATTAT	57.238	36.000	0.00	0.00	0.00	1.28
814	836	8.860517	ATATGGTGCTATCATTAGGGAGATTA	57.139	34.615	0.00	0.00	0.00	1.75
815	837	7.761981	ATATGGTGCTATCATTAGGGAGATT	57.238	36.000	0.00	0.00	0.00	2.40
816	838	8.878211	CATATATGGTGCTATCATTAGGGAGAT	58.122	37.037	4.68	0.00	0.00	2.75
817	839	7.846311	ACATATATGGTGCTATCATTAGGGAGA	59.154	37.037	16.96	0.00	0.00	3.71
818	840	7.930325	CACATATATGGTGCTATCATTAGGGAG	59.070	40.741	16.96	0.00	0.00	4.30
819	841	7.402941	ACACATATATGGTGCTATCATTAGGGA	59.597	37.037	16.96	0.00	39.87	4.20
820	842	7.568349	ACACATATATGGTGCTATCATTAGGG	58.432	38.462	16.96	0.00	39.87	3.53
821	843	9.755804	CTACACATATATGGTGCTATCATTAGG	57.244	37.037	16.96	0.00	39.87	2.69
822	844	9.755804	CCTACACATATATGGTGCTATCATTAG	57.244	37.037	16.96	8.09	39.87	1.73
823	845	9.267071	ACCTACACATATATGGTGCTATCATTA	57.733	33.333	16.96	0.59	39.87	1.90
824	846	8.150827	ACCTACACATATATGGTGCTATCATT	57.849	34.615	16.96	0.00	39.87	2.57
825	847	7.739995	ACCTACACATATATGGTGCTATCAT	57.260	36.000	16.96	0.16	39.87	2.45
826	848	8.695456	CATACCTACACATATATGGTGCTATCA	58.305	37.037	16.96	0.00	39.87	2.15
827	849	8.914011	TCATACCTACACATATATGGTGCTATC	58.086	37.037	16.96	0.00	39.87	2.08
828	850	8.838649	TCATACCTACACATATATGGTGCTAT	57.161	34.615	16.96	1.55	39.87	2.97
829	851	7.893833	ACTCATACCTACACATATATGGTGCTA	59.106	37.037	16.96	7.25	39.87	3.49
830	852	6.726299	ACTCATACCTACACATATATGGTGCT	59.274	38.462	16.96	6.63	39.87	4.40
831	853	6.936279	ACTCATACCTACACATATATGGTGC	58.064	40.000	16.96	0.00	39.87	5.01
832	854	9.020731	TGTACTCATACCTACACATATATGGTG	57.979	37.037	16.96	13.76	41.95	4.17
833	855	9.244292	CTGTACTCATACCTACACATATATGGT	57.756	37.037	16.96	13.25	35.05	3.55
834	856	9.462606	TCTGTACTCATACCTACACATATATGG	57.537	37.037	16.96	8.37	0.00	2.74
837	859	9.682465	GGATCTGTACTCATACCTACACATATA	57.318	37.037	0.00	0.00	0.00	0.86
838	860	8.170730	TGGATCTGTACTCATACCTACACATAT	58.829	37.037	0.00	0.00	0.00	1.78
839	861	7.523415	TGGATCTGTACTCATACCTACACATA	58.477	38.462	0.00	0.00	0.00	2.29
840	862	6.373759	TGGATCTGTACTCATACCTACACAT	58.626	40.000	0.00	0.00	0.00	3.21
841	863	5.762279	TGGATCTGTACTCATACCTACACA	58.238	41.667	0.00	0.00	0.00	3.72
842	864	6.071840	GGATGGATCTGTACTCATACCTACAC	60.072	46.154	0.00	0.00	0.00	2.90
843	865	6.010850	GGATGGATCTGTACTCATACCTACA	58.989	44.000	0.00	0.00	0.00	2.74
844	866	6.249951	AGGATGGATCTGTACTCATACCTAC	58.750	44.000	0.00	0.00	0.00	3.18
845	867	6.275855	AGAGGATGGATCTGTACTCATACCTA	59.724	42.308	11.17	0.00	0.00	3.08
846	868	5.075761	AGAGGATGGATCTGTACTCATACCT	59.924	44.000	11.17	0.00	0.00	3.08
847	869	5.184864	CAGAGGATGGATCTGTACTCATACC	59.815	48.000	11.17	0.00	39.48	2.73
848	870	6.266168	CAGAGGATGGATCTGTACTCATAC	57.734	45.833	11.17	0.00	39.48	2.39
863	885	1.809271	CGCCACAGATTCCAGAGGATG	60.809	57.143	0.00	0.00	0.00	3.51
864	886	0.467384	CGCCACAGATTCCAGAGGAT	59.533	55.000	0.00	0.00	0.00	3.24
865	887	0.904865	ACGCCACAGATTCCAGAGGA	60.905	55.000	0.00	0.00	0.00	3.71
866	888	0.824109	TACGCCACAGATTCCAGAGG	59.176	55.000	0.00	0.00	0.00	3.69
867	889	2.898729	ATACGCCACAGATTCCAGAG	57.101	50.000	0.00	0.00	0.00	3.35
868	890	3.006859	CCATATACGCCACAGATTCCAGA	59.993	47.826	0.00	0.00	0.00	3.86
869	891	3.329386	CCATATACGCCACAGATTCCAG	58.671	50.000	0.00	0.00	0.00	3.86
870	892	2.549992	GCCATATACGCCACAGATTCCA	60.550	50.000	0.00	0.00	0.00	3.53
871	893	2.076863	GCCATATACGCCACAGATTCC	58.923	52.381	0.00	0.00	0.00	3.01
872	894	2.996621	GAGCCATATACGCCACAGATTC	59.003	50.000	0.00	0.00	0.00	2.52
873	895	2.368548	TGAGCCATATACGCCACAGATT	59.631	45.455	0.00	0.00	0.00	2.40
874	896	1.970640	TGAGCCATATACGCCACAGAT	59.029	47.619	0.00	0.00	0.00	2.90
875	897	1.408969	TGAGCCATATACGCCACAGA	58.591	50.000	0.00	0.00	0.00	3.41
876	898	2.341257	GATGAGCCATATACGCCACAG	58.659	52.381	0.00	0.00	0.00	3.66
877	899	1.001974	GGATGAGCCATATACGCCACA	59.998	52.381	0.00	0.00	36.34	4.17
878	900	1.001974	TGGATGAGCCATATACGCCAC	59.998	52.381	0.00	0.00	43.33	5.01
879	901	1.347062	TGGATGAGCCATATACGCCA	58.653	50.000	0.00	0.00	43.33	5.69
889	911	4.424711	TGGGCCGTTGGATGAGCC	62.425	66.667	0.00	0.00	44.99	4.70
890	912	2.252072	TAGTGGGCCGTTGGATGAGC	62.252	60.000	0.00	0.00	0.00	4.26
891	913	0.462047	GTAGTGGGCCGTTGGATGAG	60.462	60.000	0.00	0.00	0.00	2.90
892	914	1.195442	TGTAGTGGGCCGTTGGATGA	61.195	55.000	0.00	0.00	0.00	2.92
893	915	0.744414	CTGTAGTGGGCCGTTGGATG	60.744	60.000	0.00	0.00	0.00	3.51
894	916	1.602237	CTGTAGTGGGCCGTTGGAT	59.398	57.895	0.00	0.00	0.00	3.41
895	917	3.065306	CTGTAGTGGGCCGTTGGA	58.935	61.111	0.00	0.00	0.00	3.53
896	918	2.746277	GCTGTAGTGGGCCGTTGG	60.746	66.667	0.00	0.00	0.00	3.77
897	919	1.741770	GAGCTGTAGTGGGCCGTTG	60.742	63.158	0.00	0.00	0.00	4.10
898	920	1.913762	AGAGCTGTAGTGGGCCGTT	60.914	57.895	0.00	0.00	0.00	4.44
899	921	2.283966	AGAGCTGTAGTGGGCCGT	60.284	61.111	0.00	0.00	0.00	5.68
900	922	2.185350	CAGAGCTGTAGTGGGCCG	59.815	66.667	0.00	0.00	0.00	6.13
901	923	2.586792	CCAGAGCTGTAGTGGGCC	59.413	66.667	0.00	0.00	0.00	5.80
902	924	2.124942	GCCAGAGCTGTAGTGGGC	60.125	66.667	0.00	0.00	35.50	5.36
912	934	2.338785	GCTTGTTCCCAGCCAGAGC	61.339	63.158	0.00	0.00	40.32	4.09
913	935	3.993535	GCTTGTTCCCAGCCAGAG	58.006	61.111	0.00	0.00	0.00	3.35
922	944	9.729256	CTCCTATAGAGAAACAGGGCTTGTTCC	62.729	48.148	15.75	2.48	45.16	3.62
923	945	6.906426	CTCCTATAGAGAAACAGGGCTTGTTC	60.906	46.154	15.75	9.22	45.16	3.18
924	946	5.104735	CTCCTATAGAGAAACAGGGCTTGTT	60.105	44.000	9.43	9.43	46.50	2.83
925	947	4.362677	TCCTATAGAGAAACAGGGCTTGT	58.637	43.478	0.00	0.00	43.45	3.16
926	948	4.407296	ACTCCTATAGAGAAACAGGGCTTG	59.593	45.833	0.00	0.00	46.50	4.01
927	949	4.625963	ACTCCTATAGAGAAACAGGGCTT	58.374	43.478	0.00	0.00	46.50	4.35
928	950	4.273300	ACTCCTATAGAGAAACAGGGCT	57.727	45.455	0.00	0.00	46.50	5.19
929	951	5.141910	AGTACTCCTATAGAGAAACAGGGC	58.858	45.833	0.00	0.00	46.50	5.19
930	952	7.519927	ACTAGTACTCCTATAGAGAAACAGGG	58.480	42.308	0.00	0.00	46.50	4.45
931	953	8.434392	AGACTAGTACTCCTATAGAGAAACAGG	58.566	40.741	0.00	0.00	46.50	4.00
932	954	9.485206	GAGACTAGTACTCCTATAGAGAAACAG	57.515	40.741	0.00	0.00	46.50	3.16
933	955	8.431222	GGAGACTAGTACTCCTATAGAGAAACA	58.569	40.741	23.48	0.00	46.50	2.83
934	956	8.837788	GGAGACTAGTACTCCTATAGAGAAAC	57.162	42.308	23.48	2.43	46.50	2.78
946	968	0.822944	GCCGGGGGAGACTAGTACTC	60.823	65.000	2.18	4.63	0.00	2.59
947	969	1.229643	GCCGGGGGAGACTAGTACT	59.770	63.158	2.18	0.00	0.00	2.73
948	970	1.831726	GGCCGGGGGAGACTAGTAC	60.832	68.421	2.18	0.00	0.00	2.73
949	971	2.605299	GGCCGGGGGAGACTAGTA	59.395	66.667	2.18	0.00	0.00	1.82
950	972	4.835891	CGGCCGGGGGAGACTAGT	62.836	72.222	20.10	0.00	0.00	2.57
970	992	2.034221	GCCTTCGGAAGTGGGCTT	59.966	61.111	16.07	0.00	42.80	4.35
971	993	4.394712	CGCCTTCGGAAGTGGGCT	62.395	66.667	16.07	0.00	43.47	5.19
972	994	4.699522	ACGCCTTCGGAAGTGGGC	62.700	66.667	16.07	12.31	42.73	5.36
973	995	2.032071	AACGCCTTCGGAAGTGGG	59.968	61.111	16.07	16.14	40.69	4.61
974	996	2.033194	GGAACGCCTTCGGAAGTGG	61.033	63.158	16.07	9.77	40.69	4.00
975	997	0.882927	TTGGAACGCCTTCGGAAGTG	60.883	55.000	16.07	10.61	40.69	3.16
976	998	0.179040	TTTGGAACGCCTTCGGAAGT	60.179	50.000	16.07	0.00	40.69	3.01
977	999	0.237498	GTTTGGAACGCCTTCGGAAG	59.763	55.000	10.82	10.82	40.69	3.46
978	1000	1.167781	GGTTTGGAACGCCTTCGGAA	61.168	55.000	0.00	0.00	40.69	4.30
979	1001	1.598685	GGTTTGGAACGCCTTCGGA	60.599	57.895	0.00	0.00	40.69	4.55
980	1002	2.622962	GGGTTTGGAACGCCTTCGG	61.623	63.158	0.00	0.00	40.69	4.30
981	1003	1.574702	GAGGGTTTGGAACGCCTTCG	61.575	60.000	4.52	0.00	44.60	3.79
982	1004	1.574702	CGAGGGTTTGGAACGCCTTC	61.575	60.000	4.52	0.00	44.60	3.46
993	1015	0.887836	GGAACGCCTTTCGAGGGTTT	60.888	55.000	6.97	2.39	41.67	3.27
1038	1060	3.062466	GGAAACCCAAGGCCTCGC	61.062	66.667	5.23	0.00	0.00	5.03
1058	1086	1.448540	GCGATCTCCCATATGGCCG	60.449	63.158	16.97	13.64	0.00	6.13
1064	1092	0.537371	TCTCGCTGCGATCTCCCATA	60.537	55.000	26.15	0.00	34.61	2.74
1130	1162	0.811915	GCAGGAACACTAGCTCGAGA	59.188	55.000	18.75	0.00	0.00	4.04
1155	1187	0.251386	ACGAGGCTGAGAGGACAGAA	60.251	55.000	0.00	0.00	39.94	3.02
1236	1275	3.219928	GCGGAGAGATCGGAGGCA	61.220	66.667	0.00	0.00	0.00	4.75
1646	1706	3.362797	TTCAGTCCGAGCGCGACT	61.363	61.111	12.10	10.21	40.82	4.18
1747	1807	4.015406	TCATGGGCTTCACGCGGT	62.015	61.111	12.47	0.00	40.44	5.68
1977	2037	2.804986	TCATGGCTGCCTTGTATGAA	57.195	45.000	27.50	10.72	31.64	2.57
1991	2051	4.924937	CTGTTCTCCAGTACCCATTCATGG	60.925	50.000	0.00	0.00	40.81	3.66
2271	3584	1.067916	GCACCAACCAAACTGCTGG	59.932	57.895	0.00	0.00	42.68	4.85
2306	3619	3.898123	GGACTAGTAGATGGGAATCAGCA	59.102	47.826	3.59	0.00	33.49	4.41
2327	3640	8.582433	ACAATTAAAACACTTAAATTCACGGG	57.418	30.769	0.00	0.00	0.00	5.28
2349	3662	9.921637	AAGAACATTTTTGACACTAGAAAACAA	57.078	25.926	0.00	0.00	0.00	2.83
2366	3679	9.338622	CCTCCGTCCTAAAATATAAGAACATTT	57.661	33.333	0.00	0.00	0.00	2.32
2368	3681	8.258850	TCCTCCGTCCTAAAATATAAGAACAT	57.741	34.615	0.00	0.00	0.00	2.71
2369	3682	7.664552	TCCTCCGTCCTAAAATATAAGAACA	57.335	36.000	0.00	0.00	0.00	3.18
2370	3683	8.202811	ACTTCCTCCGTCCTAAAATATAAGAAC	58.797	37.037	0.00	0.00	0.00	3.01
2371	3684	8.315220	ACTTCCTCCGTCCTAAAATATAAGAA	57.685	34.615	0.00	0.00	0.00	2.52
2372	3685	7.909485	ACTTCCTCCGTCCTAAAATATAAGA	57.091	36.000	0.00	0.00	0.00	2.10
2378	3691	9.916360	AAAATAATACTTCCTCCGTCCTAAAAT	57.084	29.630	0.00	0.00	0.00	1.82
2379	3692	9.387257	GAAAATAATACTTCCTCCGTCCTAAAA	57.613	33.333	0.00	0.00	0.00	1.52
2380	3693	8.542080	TGAAAATAATACTTCCTCCGTCCTAAA	58.458	33.333	0.00	0.00	0.00	1.85
2381	3694	8.081517	TGAAAATAATACTTCCTCCGTCCTAA	57.918	34.615	0.00	0.00	0.00	2.69
2382	3695	7.343833	ACTGAAAATAATACTTCCTCCGTCCTA	59.656	37.037	0.00	0.00	0.00	2.94
2383	3696	6.156429	ACTGAAAATAATACTTCCTCCGTCCT	59.844	38.462	0.00	0.00	0.00	3.85
2384	3697	6.346896	ACTGAAAATAATACTTCCTCCGTCC	58.653	40.000	0.00	0.00	0.00	4.79
2385	3698	7.011202	GGAACTGAAAATAATACTTCCTCCGTC	59.989	40.741	0.00	0.00	0.00	4.79
2386	3699	6.822170	GGAACTGAAAATAATACTTCCTCCGT	59.178	38.462	0.00	0.00	0.00	4.69
2387	3700	7.048512	AGGAACTGAAAATAATACTTCCTCCG	58.951	38.462	0.00	0.00	37.18	4.63
2388	3701	8.809468	AAGGAACTGAAAATAATACTTCCTCC	57.191	34.615	0.00	0.00	40.86	4.30
2390	3703	9.807921	TCAAAGGAACTGAAAATAATACTTCCT	57.192	29.630	0.00	0.00	40.86	3.36
2414	3727	9.761504	ACACAATGATAATGTTTTGTCAATTCA	57.238	25.926	0.00	0.00	36.68	2.57
2497	3810	8.864024	CAATATATCATGATGGACTCGTTACAC	58.136	37.037	18.72	0.00	0.00	2.90
2602	3932	4.998672	AGCACCGTTAAGTAATACAAGCAA	59.001	37.500	0.00	0.00	0.00	3.91
2603	3933	4.390603	CAGCACCGTTAAGTAATACAAGCA	59.609	41.667	0.00	0.00	0.00	3.91
2683	4014	7.711772	CGTATGTACTTACCCAACCAATTCATA	59.288	37.037	12.03	0.00	0.00	2.15
2722	4053	0.320421	ACACCGTAGCGCATGAACTT	60.320	50.000	11.47	0.00	0.00	2.66
2769	4100	1.200716	AGCAATGGTTCTCGCAACATG	59.799	47.619	0.00	0.00	0.00	3.21
2839	4170	0.514691	CTCTTGACCTGCGCAAAGTC	59.485	55.000	25.69	25.69	0.00	3.01
2842	4173	2.260869	GGCTCTTGACCTGCGCAAA	61.261	57.895	13.05	0.94	0.00	3.68
2865	4196	3.068732	CGAATCTGATTCCCAGCTACTGA	59.931	47.826	21.32	0.00	42.62	3.41
2884	4215	1.068588	CTGATCCGGGTGCTATTCGAA	59.931	52.381	0.00	0.00	0.00	3.71
2890	4221	3.950232	GGACTGATCCGGGTGCTA	58.050	61.111	0.00	0.00	34.48	3.49
2900	4231	0.035630	GCTGCTGAACTGGGACTGAT	60.036	55.000	0.00	0.00	0.00	2.90
2902	4233	0.535780	TTGCTGCTGAACTGGGACTG	60.536	55.000	0.00	0.00	0.00	3.51
2922	4253	1.967066	CTATGTCTCAGGGAATCGCCT	59.033	52.381	0.00	0.00	36.66	5.52
2926	4257	4.036144	GCTTTTGCTATGTCTCAGGGAATC	59.964	45.833	0.00	0.00	43.35	2.52
2992	4335	3.134127	GACGGGGCAGGCAACATC	61.134	66.667	0.00	0.00	41.41	3.06
3082	4425	2.285368	AGACCGCCTGGGGATGAA	60.285	61.111	12.98	0.00	41.60	2.57
3112	4455	1.647334	AAGTCAAAACCCGGGGTGGA	61.647	55.000	27.92	17.85	42.00	4.02
3115	4458	1.830847	GCAAGTCAAAACCCGGGGT	60.831	57.895	27.92	18.49	37.65	4.95
3154	4497	0.322975	CGAGGGCCTATGGAATGGAG	59.677	60.000	5.73	0.00	0.00	3.86
3190	4533	2.030958	GCTGCCAATGGTTGCAAGC	61.031	57.895	21.51	21.51	36.98	4.01
3197	4540	4.066139	GGGGGAGCTGCCAATGGT	62.066	66.667	26.95	0.00	38.95	3.55
3223	4566	4.667573	TGTGGTGGCACAATAGGAATAAA	58.332	39.130	20.82	0.00	44.16	1.40
3275	4618	2.192263	GTGGAAGTTGGAGGAGAGGAT	58.808	52.381	0.00	0.00	0.00	3.24
3319	4662	6.462909	GGGAAAAGTTGGAAAACATCACATCT	60.463	38.462	0.00	0.00	0.00	2.90

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.