AutoCloner

Multiple sequence alignment - TraesCS3B01G446800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G446800	chr3B	100.000	2966	0	0	1	2966	686045584	686042619	0.000000e+00	5478.0
1	TraesCS3B01G446800	chr3B	92.274	1592	70	25	609	2152	685980492	685978906	0.000000e+00	2209.0
2	TraesCS3B01G446800	chr3B	97.518	1249	29	2	937	2183	686022020	686020772	0.000000e+00	2134.0
3	TraesCS3B01G446800	chr3B	87.546	1622	143	31	609	2179	685942036	685940423	0.000000e+00	1821.0
4	TraesCS3B01G446800	chr3B	95.765	921	33	3	19	939	686025499	686024585	0.000000e+00	1480.0
5	TraesCS3B01G446800	chr3B	96.570	758	22	4	2212	2966	169441767	169442523	0.000000e+00	1253.0
6	TraesCS3B01G446800	chr3B	96.424	755	23	4	2214	2966	607464516	607463764	0.000000e+00	1242.0
7	TraesCS3B01G446800	chr3B	83.110	373	26	14	628	985	685910518	685910168	3.710000e-79	305.0
8	TraesCS3B01G446800	chr3B	100.000	39	0	0	947	985	685882795	685882757	4.100000e-09	73.1
9	TraesCS3B01G446800	chr3B	93.182	44	2	1	2177	2219	685431310	685431353	2.470000e-06	63.9
10	TraesCS3B01G446800	chr3D	89.754	1464	120	18	741	2179	520684406	520682948	0.000000e+00	1845.0
11	TraesCS3B01G446800	chr3D	92.506	1201	89	1	984	2183	520703528	520702328	0.000000e+00	1718.0
12	TraesCS3B01G446800	chr3D	89.755	1103	110	3	984	2083	520678218	520677116	0.000000e+00	1408.0
13	TraesCS3B01G446800	chr3D	89.753	1093	103	4	1000	2083	520641870	520640778	0.000000e+00	1389.0
14	TraesCS3B01G446800	chr3D	82.973	370	27	8	631	985	520678599	520678251	4.800000e-78	302.0
15	TraesCS3B01G446800	chr3D	89.441	161	16	1	434	593	23738740	23738580	5.010000e-48	202.0
16	TraesCS3B01G446800	chr3D	86.747	166	14	4	825	985	520656991	520656829	8.450000e-41	178.0
17	TraesCS3B01G446800	chr3A	86.703	1474	153	15	646	2083	658186488	658187954	0.000000e+00	1596.0
18	TraesCS3B01G446800	chr3A	86.499	1474	156	16	646	2083	655936991	655935525	0.000000e+00	1580.0
19	TraesCS3B01G446800	chr3A	83.113	379	20	9	628	985	655995333	655994978	3.710000e-79	305.0
20	TraesCS3B01G446800	chr2B	96.925	748	21	2	2220	2966	164116626	164117372	0.000000e+00	1253.0
21	TraesCS3B01G446800	chr2B	96.424	755	24	3	2214	2966	520908992	520908239	0.000000e+00	1242.0
22	TraesCS3B01G446800	chr2B	87.417	151	17	2	448	596	609141464	609141314	3.930000e-39	172.0
23	TraesCS3B01G446800	chr1B	96.796	749	22	2	2219	2966	433134248	433133501	0.000000e+00	1249.0
24	TraesCS3B01G446800	chr1B	91.394	581	37	6	18	593	666980848	666980276	0.000000e+00	784.0
25	TraesCS3B01G446800	chr1B	93.182	44	2	1	2177	2219	662117569	662117612	2.470000e-06	63.9
26	TraesCS3B01G446800	chr7B	96.538	751	24	2	2217	2966	10649356	10650105	0.000000e+00	1242.0
27	TraesCS3B01G446800	chr7B	93.182	44	2	1	2177	2219	696226235	696226278	2.470000e-06	63.9
28	TraesCS3B01G446800	chr6B	96.662	749	22	3	2219	2966	140924699	140925445	0.000000e+00	1242.0
29	TraesCS3B01G446800	chr6B	96.291	755	25	3	2214	2966	94043101	94042348	0.000000e+00	1236.0
30	TraesCS3B01G446800	chr6B	93.182	44	2	1	2177	2219	134881917	134881960	2.470000e-06	63.9
31	TraesCS3B01G446800	chr6B	93.182	44	2	1	2177	2219	472692381	472692424	2.470000e-06	63.9
32	TraesCS3B01G446800	chr6B	93.182	44	2	1	2177	2219	626066291	626066248	2.470000e-06	63.9
33	TraesCS3B01G446800	chr4B	96.419	754	26	1	2214	2966	640266022	640266775	0.000000e+00	1242.0
34	TraesCS3B01G446800	chr7D	90.741	162	14	1	434	594	34147826	34147987	6.440000e-52	215.0
35	TraesCS3B01G446800	chr6D	89.286	84	8	1	18	100	354994740	354994823	1.450000e-18	104.0
36	TraesCS3B01G446800	chr5B	95.349	43	2	0	2177	2219	384974147	384974105	5.300000e-08	69.4
37	TraesCS3B01G446800	chr4A	93.182	44	2	1	2177	2219	692305292	692305249	2.470000e-06	63.9
38	TraesCS3B01G446800	chr4A	93.182	44	2	1	2177	2219	731899975	731899932	2.470000e-06	63.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G446800	chr3B	686042619	686045584	2965	True	5478	5478	100.0000	1	2966	1	chr3B.!!$R6	2965
1	TraesCS3B01G446800	chr3B	685978906	685980492	1586	True	2209	2209	92.2740	609	2152	1	chr3B.!!$R5	1543
2	TraesCS3B01G446800	chr3B	685940423	685942036	1613	True	1821	1821	87.5460	609	2179	1	chr3B.!!$R4	1570
3	TraesCS3B01G446800	chr3B	686020772	686025499	4727	True	1807	2134	96.6415	19	2183	2	chr3B.!!$R7	2164
4	TraesCS3B01G446800	chr3B	169441767	169442523	756	False	1253	1253	96.5700	2212	2966	1	chr3B.!!$F1	754
5	TraesCS3B01G446800	chr3B	607463764	607464516	752	True	1242	1242	96.4240	2214	2966	1	chr3B.!!$R1	752
6	TraesCS3B01G446800	chr3D	520682948	520684406	1458	True	1845	1845	89.7540	741	2179	1	chr3D.!!$R4	1438
7	TraesCS3B01G446800	chr3D	520702328	520703528	1200	True	1718	1718	92.5060	984	2183	1	chr3D.!!$R5	1199
8	TraesCS3B01G446800	chr3D	520640778	520641870	1092	True	1389	1389	89.7530	1000	2083	1	chr3D.!!$R2	1083
9	TraesCS3B01G446800	chr3D	520677116	520678599	1483	True	855	1408	86.3640	631	2083	2	chr3D.!!$R6	1452
10	TraesCS3B01G446800	chr3A	658186488	658187954	1466	False	1596	1596	86.7030	646	2083	1	chr3A.!!$F1	1437
11	TraesCS3B01G446800	chr3A	655935525	655936991	1466	True	1580	1580	86.4990	646	2083	1	chr3A.!!$R1	1437
12	TraesCS3B01G446800	chr2B	164116626	164117372	746	False	1253	1253	96.9250	2220	2966	1	chr2B.!!$F1	746
13	TraesCS3B01G446800	chr2B	520908239	520908992	753	True	1242	1242	96.4240	2214	2966	1	chr2B.!!$R1	752
14	TraesCS3B01G446800	chr1B	433133501	433134248	747	True	1249	1249	96.7960	2219	2966	1	chr1B.!!$R1	747
15	TraesCS3B01G446800	chr1B	666980276	666980848	572	True	784	784	91.3940	18	593	1	chr1B.!!$R2	575
16	TraesCS3B01G446800	chr7B	10649356	10650105	749	False	1242	1242	96.5380	2217	2966	1	chr7B.!!$F1	749
17	TraesCS3B01G446800	chr6B	140924699	140925445	746	False	1242	1242	96.6620	2219	2966	1	chr6B.!!$F2	747
18	TraesCS3B01G446800	chr6B	94042348	94043101	753	True	1236	1236	96.2910	2214	2966	1	chr6B.!!$R1	752
19	TraesCS3B01G446800	chr4B	640266022	640266775	753	False	1242	1242	96.4190	2214	2966	1	chr4B.!!$F1	752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
467	472	0.247185	ATTGTGCTTTTCCCGGCATG	59.753	50.0	0.0	0.0	40.66	4.06	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2200	4856	0.613012	AGCTCCCCCAAAAGATGTGC	60.613	55.0	0.0	0.0	0.0	4.57	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
198	203	2.092807	TGATGTGATCCTCCATGGTGTG	60.093	50.000	12.58	3.89	37.07	3.82
208	213	3.218453	CTCCATGGTGTGTGGTTTGTTA	58.782	45.455	12.58	0.00	37.96	2.41
230	235	2.224090	TGTCTTTGGCTAGTAACACGCA	60.224	45.455	0.00	0.00	0.00	5.24
279	284	1.767289	ACGTACGTCTCAGCTTTGTG	58.233	50.000	16.72	0.00	0.00	3.33
381	386	1.980052	CCACGGCCTCCTTGTTCTA	59.020	57.895	0.00	0.00	0.00	2.10
388	393	1.002773	GCCTCCTTGTTCTACCGGAAA	59.997	52.381	9.46	0.00	35.51	3.13
444	449	0.398696	ACACAGTTGTATTCCCGGCA	59.601	50.000	0.00	0.00	32.60	5.69
467	472	0.247185	ATTGTGCTTTTCCCGGCATG	59.753	50.000	0.00	0.00	40.66	4.06
468	473	1.814772	TTGTGCTTTTCCCGGCATGG	61.815	55.000	0.00	0.00	40.66	3.66
613	618	8.812513	TTTCCTATCACATTTGTTGATCTGAT	57.187	30.769	0.00	0.00	0.00	2.90
695	705	6.900186	ACCTCTTCTCTTAGATCATCAAGGAA	59.100	38.462	0.00	1.72	0.00	3.36
1362	4009	3.004315	GGTTTGATGTGGTTGACGACATT	59.996	43.478	12.08	0.00	43.69	2.71
1372	4019	3.181497	GGTTGACGACATTAAGCATGCAT	60.181	43.478	21.98	11.22	36.14	3.96
1614	4261	4.475135	GTCGCCCTCCAAGGAGCC	62.475	72.222	10.68	3.17	37.67	4.70
1650	4297	2.481854	GCACAATGCCAATTCACACAA	58.518	42.857	0.00	0.00	37.42	3.33
2129	4782	2.817258	TCGCGAACCCATTCTTTTCATT	59.183	40.909	6.20	0.00	32.12	2.57
2185	4841	9.695526	TCAAATCACTTTACCATCATTCAAAAG	57.304	29.630	0.00	0.00	34.19	2.27
2186	4842	8.437742	CAAATCACTTTACCATCATTCAAAAGC	58.562	33.333	0.00	0.00	31.78	3.51
2187	4843	6.647334	TCACTTTACCATCATTCAAAAGCA	57.353	33.333	0.00	0.00	31.78	3.91
2188	4844	7.048629	TCACTTTACCATCATTCAAAAGCAA	57.951	32.000	0.00	0.00	31.78	3.91
2189	4845	7.495901	TCACTTTACCATCATTCAAAAGCAAA	58.504	30.769	0.00	0.00	31.78	3.68
2190	4846	8.149647	TCACTTTACCATCATTCAAAAGCAAAT	58.850	29.630	0.00	0.00	31.78	2.32
2191	4847	8.437742	CACTTTACCATCATTCAAAAGCAAATC	58.562	33.333	0.00	0.00	31.78	2.17
2192	4848	8.149647	ACTTTACCATCATTCAAAAGCAAATCA	58.850	29.630	0.00	0.00	31.78	2.57
2193	4849	9.158233	CTTTACCATCATTCAAAAGCAAATCAT	57.842	29.630	0.00	0.00	0.00	2.45
2194	4850	8.706492	TTACCATCATTCAAAAGCAAATCATC	57.294	30.769	0.00	0.00	0.00	2.92
2195	4851	6.942976	ACCATCATTCAAAAGCAAATCATCT	58.057	32.000	0.00	0.00	0.00	2.90
2196	4852	8.070034	ACCATCATTCAAAAGCAAATCATCTA	57.930	30.769	0.00	0.00	0.00	1.98
2197	4853	8.701895	ACCATCATTCAAAAGCAAATCATCTAT	58.298	29.630	0.00	0.00	0.00	1.98
2201	4857	9.687210	TCATTCAAAAGCAAATCATCTATATGC	57.313	29.630	0.00	0.00	37.28	3.14
2202	4858	9.471084	CATTCAAAAGCAAATCATCTATATGCA	57.529	29.630	0.00	0.00	39.42	3.96
2203	4859	8.861033	TTCAAAAGCAAATCATCTATATGCAC	57.139	30.769	0.00	0.00	39.42	4.57
2204	4860	7.998580	TCAAAAGCAAATCATCTATATGCACA	58.001	30.769	0.00	0.00	39.42	4.57
2205	4861	8.635328	TCAAAAGCAAATCATCTATATGCACAT	58.365	29.630	0.00	0.00	39.42	3.21
2206	4862	8.912658	CAAAAGCAAATCATCTATATGCACATC	58.087	33.333	0.00	0.00	39.42	3.06
2207	4863	7.997773	AAGCAAATCATCTATATGCACATCT	57.002	32.000	0.00	0.00	39.42	2.90
2208	4864	7.997773	AGCAAATCATCTATATGCACATCTT	57.002	32.000	0.00	0.00	39.42	2.40
2209	4865	8.405418	AGCAAATCATCTATATGCACATCTTT	57.595	30.769	0.00	0.00	39.42	2.52
2210	4866	8.857098	AGCAAATCATCTATATGCACATCTTTT	58.143	29.630	0.00	0.00	39.42	2.27
2211	4867	8.912658	GCAAATCATCTATATGCACATCTTTTG	58.087	33.333	0.00	0.00	37.00	2.44
2212	4868	9.406828	CAAATCATCTATATGCACATCTTTTGG	57.593	33.333	0.00	0.00	32.76	3.28
2213	4869	7.698506	ATCATCTATATGCACATCTTTTGGG	57.301	36.000	0.00	0.00	32.76	4.12
2214	4870	6.005823	TCATCTATATGCACATCTTTTGGGG	58.994	40.000	0.00	0.00	32.76	4.96
2215	4871	4.728772	TCTATATGCACATCTTTTGGGGG	58.271	43.478	0.00	0.00	0.00	5.40
2224	4880	1.444933	TCTTTTGGGGGAGCTGAAGA	58.555	50.000	0.00	0.00	0.00	2.87
2372	5028	7.061054	ACATAGTGTCACTAGTATGCCTCTAA	58.939	38.462	17.43	0.00	37.44	2.10
2428	5084	6.611642	AGTTTCCTAGCCATAGACATGAGTTA	59.388	38.462	0.00	0.00	33.67	2.24
2525	5182	8.487313	TTGATCGTTTAGTATGTTGCTATTGT	57.513	30.769	0.00	0.00	0.00	2.71
2638	5295	7.825270	TCACAACGTAACTGGGTGATTATAAAT	59.175	33.333	0.00	0.00	33.88	1.40
2695	5352	4.757149	AGTTGGCATATTTCGAGATTAGGC	59.243	41.667	0.00	0.65	0.00	3.93
2744	5401	0.759436	TCTGGGCCCTCTCGGTAATC	60.759	60.000	25.70	0.00	0.00	1.75
2776	5433	3.967332	AAGCCTTGCAAGCAATGTAAT	57.033	38.095	21.43	0.00	32.93	1.89
2899	5556	4.574828	GGCAAGTAACATACCGATGACAAT	59.425	41.667	0.00	0.00	36.48	2.71

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	2.417243	GGATCCCGTGCAAATTTCAAGG	60.417	50.000	0.00	12.34	33.70	3.61
1	2	2.493278	AGGATCCCGTGCAAATTTCAAG	59.507	45.455	8.55	0.00	0.00	3.02
2	3	2.230992	CAGGATCCCGTGCAAATTTCAA	59.769	45.455	8.55	0.00	0.00	2.69
3	4	1.818060	CAGGATCCCGTGCAAATTTCA	59.182	47.619	8.55	0.00	0.00	2.69
7	8	0.394352	GACCAGGATCCCGTGCAAAT	60.394	55.000	8.55	0.00	0.00	2.32
8	9	1.002624	GACCAGGATCCCGTGCAAA	60.003	57.895	8.55	0.00	0.00	3.68
9	10	1.773856	TTGACCAGGATCCCGTGCAA	61.774	55.000	8.55	5.88	0.00	4.08
10	11	1.561769	ATTGACCAGGATCCCGTGCA	61.562	55.000	8.55	0.00	0.00	4.57
11	12	0.815615	GATTGACCAGGATCCCGTGC	60.816	60.000	8.55	0.00	0.00	5.34
12	13	0.179045	GGATTGACCAGGATCCCGTG	60.179	60.000	8.55	0.28	36.61	4.94
13	14	0.326618	AGGATTGACCAGGATCCCGT	60.327	55.000	8.55	4.74	42.28	5.28
14	15	0.107456	CAGGATTGACCAGGATCCCG	59.893	60.000	8.55	0.00	42.28	5.14
15	16	0.475906	CCAGGATTGACCAGGATCCC	59.524	60.000	8.55	0.00	46.67	3.85
16	17	0.179006	GCCAGGATTGACCAGGATCC	60.179	60.000	2.48	2.48	46.67	3.36
198	203	4.584327	AGCCAAAGACATAACAAACCAC	57.416	40.909	0.00	0.00	0.00	4.16
208	213	3.000727	GCGTGTTACTAGCCAAAGACAT	58.999	45.455	0.00	0.00	0.00	3.06
381	386	3.306571	GCTAGACTACCTGTTTTTCCGGT	60.307	47.826	0.00	0.00	37.42	5.28
388	393	2.226962	TCCCGCTAGACTACCTGTTT	57.773	50.000	0.00	0.00	0.00	2.83
467	472	0.891904	TTCGCCCTAACCAGTTTGCC	60.892	55.000	0.00	0.00	0.00	4.52
468	473	0.521735	CTTCGCCCTAACCAGTTTGC	59.478	55.000	0.00	0.00	0.00	3.68
590	595	6.261603	GCATCAGATCAACAAATGTGATAGGA	59.738	38.462	0.00	0.00	37.50	2.94
592	597	7.023197	TGCATCAGATCAACAAATGTGATAG	57.977	36.000	0.00	0.00	37.50	2.08
601	606	5.319140	CAAGGATTGCATCAGATCAACAA	57.681	39.130	0.00	0.00	40.39	2.83
695	705	4.382147	GCGAGAATAAGTTGGAAGAGGTCT	60.382	45.833	0.00	0.00	0.00	3.85
1082	3723	2.440796	CGGCATGACCATGGGCTT	60.441	61.111	21.02	10.26	39.16	4.35
1372	4019	2.361104	GGGGCACGCATTCTCCAA	60.361	61.111	0.00	0.00	42.57	3.53
1650	4297	2.281070	CCGGCACTGCAGTTCTGT	60.281	61.111	18.94	0.00	0.00	3.41
1816	4463	1.201647	GGAGAACCTGTGAACGATCGA	59.798	52.381	24.34	0.00	0.00	3.59
2129	4782	6.061441	TGCTTATTGAAAACAAGTCTCTGGA	58.939	36.000	0.00	0.00	0.00	3.86
2183	4839	7.997773	AGATGTGCATATAGATGATTTGCTT	57.002	32.000	0.39	0.00	41.58	3.91
2184	4840	7.997773	AAGATGTGCATATAGATGATTTGCT	57.002	32.000	0.39	0.00	41.58	3.91
2185	4841	8.912658	CAAAAGATGTGCATATAGATGATTTGC	58.087	33.333	0.39	0.00	41.44	3.68
2186	4842	9.406828	CCAAAAGATGTGCATATAGATGATTTG	57.593	33.333	0.39	2.86	34.73	2.32
2187	4843	8.582437	CCCAAAAGATGTGCATATAGATGATTT	58.418	33.333	0.39	0.00	34.73	2.17
2188	4844	7.177921	CCCCAAAAGATGTGCATATAGATGATT	59.822	37.037	0.39	0.00	34.73	2.57
2189	4845	6.662234	CCCCAAAAGATGTGCATATAGATGAT	59.338	38.462	0.39	0.00	34.73	2.45
2190	4846	6.005823	CCCCAAAAGATGTGCATATAGATGA	58.994	40.000	0.39	0.00	34.73	2.92
2191	4847	5.184479	CCCCCAAAAGATGTGCATATAGATG	59.816	44.000	0.00	0.00	36.02	2.90
2192	4848	5.074929	TCCCCCAAAAGATGTGCATATAGAT	59.925	40.000	0.00	0.00	0.00	1.98
2193	4849	4.415179	TCCCCCAAAAGATGTGCATATAGA	59.585	41.667	0.00	0.00	0.00	1.98
2194	4850	4.728772	TCCCCCAAAAGATGTGCATATAG	58.271	43.478	0.00	0.00	0.00	1.31
2195	4851	4.728772	CTCCCCCAAAAGATGTGCATATA	58.271	43.478	0.00	0.00	0.00	0.86
2196	4852	3.569491	CTCCCCCAAAAGATGTGCATAT	58.431	45.455	0.00	0.00	0.00	1.78
2197	4853	2.949963	GCTCCCCCAAAAGATGTGCATA	60.950	50.000	0.00	0.00	0.00	3.14
2198	4854	1.856629	CTCCCCCAAAAGATGTGCAT	58.143	50.000	0.00	0.00	0.00	3.96
2199	4855	0.899717	GCTCCCCCAAAAGATGTGCA	60.900	55.000	0.00	0.00	0.00	4.57
2200	4856	0.613012	AGCTCCCCCAAAAGATGTGC	60.613	55.000	0.00	0.00	0.00	4.57
2201	4857	1.180029	CAGCTCCCCCAAAAGATGTG	58.820	55.000	0.00	0.00	0.00	3.21
2202	4858	1.075601	TCAGCTCCCCCAAAAGATGT	58.924	50.000	0.00	0.00	31.06	3.06
2203	4859	2.097825	CTTCAGCTCCCCCAAAAGATG	58.902	52.381	0.00	0.00	0.00	2.90
2204	4860	1.995542	TCTTCAGCTCCCCCAAAAGAT	59.004	47.619	0.00	0.00	0.00	2.40
2205	4861	1.444933	TCTTCAGCTCCCCCAAAAGA	58.555	50.000	0.00	0.00	0.00	2.52
2206	4862	2.292828	TTCTTCAGCTCCCCCAAAAG	57.707	50.000	0.00	0.00	0.00	2.27
2207	4863	2.765689	TTTCTTCAGCTCCCCCAAAA	57.234	45.000	0.00	0.00	0.00	2.44
2208	4864	2.765689	TTTTCTTCAGCTCCCCCAAA	57.234	45.000	0.00	0.00	0.00	3.28
2209	4865	2.999185	ATTTTCTTCAGCTCCCCCAA	57.001	45.000	0.00	0.00	0.00	4.12
2210	4866	3.902218	CATATTTTCTTCAGCTCCCCCA	58.098	45.455	0.00	0.00	0.00	4.96
2211	4867	2.625314	GCATATTTTCTTCAGCTCCCCC	59.375	50.000	0.00	0.00	0.00	5.40
2212	4868	2.625314	GGCATATTTTCTTCAGCTCCCC	59.375	50.000	0.00	0.00	0.00	4.81
2213	4869	2.625314	GGGCATATTTTCTTCAGCTCCC	59.375	50.000	0.00	0.00	0.00	4.30
2214	4870	3.560105	AGGGCATATTTTCTTCAGCTCC	58.440	45.455	0.00	0.00	0.00	4.70
2215	4871	5.615289	TCTAGGGCATATTTTCTTCAGCTC	58.385	41.667	0.00	0.00	0.00	4.09
2372	5028	8.622157	CATCTTTGATTCAATGAGCTAGTCAAT	58.378	33.333	16.99	0.00	39.19	2.57
2428	5084	6.772233	TGATGTGATCCCGTTAATCAAATGAT	59.228	34.615	0.00	0.00	32.39	2.45
2525	5182	9.739276	AGGAACATGTATAAGTCATGAAGAAAA	57.261	29.630	0.00	0.00	43.47	2.29
2638	5295	1.075536	TGGAGACACCTGTAGAGCTCA	59.924	52.381	17.77	0.00	39.86	4.26
2744	5401	3.544684	TGCAAGGCTTATAGTGATGTGG	58.455	45.455	0.00	0.00	0.00	4.17
2776	5433	7.766738	TGCATCATTCCGTAACTAACTCATTAA	59.233	33.333	0.00	0.00	0.00	1.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.