Multiple sequence alignment - TraesCS3B01G446500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G446500 chr3B 100.000 2966 0 0 1 2966 685911118 685908153 0.000000e+00 5478.0
1 TraesCS3B01G446500 chr3B 88.084 1519 115 27 628 2114 685875546 685874062 0.000000e+00 1742.0
2 TraesCS3B01G446500 chr3B 87.061 1538 152 21 580 2085 685942038 685940516 0.000000e+00 1694.0
3 TraesCS3B01G446500 chr3B 87.019 1533 157 19 580 2086 685980494 685978978 0.000000e+00 1690.0
4 TraesCS3B01G446500 chr3B 91.466 1160 92 4 961 2113 685763609 685762450 0.000000e+00 1587.0
5 TraesCS3B01G446500 chr3B 99.545 220 1 0 2747 2966 819794368 819794587 4.600000e-108 401.0
6 TraesCS3B01G446500 chr3B 98.667 225 3 0 2742 2966 17080777 17080553 1.660000e-107 399.0
7 TraesCS3B01G446500 chr3B 83.110 373 26 11 601 951 686044957 686044600 3.710000e-79 305.0
8 TraesCS3B01G446500 chr3B 84.581 227 16 6 601 826 686024892 686024684 1.080000e-49 207.0
9 TraesCS3B01G446500 chr3B 89.899 99 8 2 832 929 685763710 685763613 3.100000e-25 126.0
10 TraesCS3B01G446500 chr3B 90.909 77 4 2 2572 2645 823326827 823326751 1.880000e-17 100.0
11 TraesCS3B01G446500 chr3D 94.571 2542 117 18 1 2530 520679202 520676670 0.000000e+00 3910.0
12 TraesCS3B01G446500 chr3D 87.997 1508 138 16 605 2086 520703919 520702429 0.000000e+00 1742.0
13 TraesCS3B01G446500 chr3D 88.344 1407 133 12 698 2085 520684435 520683041 0.000000e+00 1661.0
14 TraesCS3B01G446500 chr3D 92.253 1123 78 6 1000 2115 520641870 520640750 0.000000e+00 1583.0
15 TraesCS3B01G446500 chr3D 83.762 1010 128 27 1113 2115 520640133 520639153 0.000000e+00 924.0
16 TraesCS3B01G446500 chr3D 84.024 338 24 14 628 939 520642203 520641870 6.220000e-77 298.0
17 TraesCS3B01G446500 chr3D 94.898 98 5 0 2648 2745 520676651 520676554 1.420000e-33 154.0
18 TraesCS3B01G446500 chr3A 93.592 2091 112 13 459 2530 655995477 655993390 0.000000e+00 3099.0
19 TraesCS3B01G446500 chr3A 88.874 1528 105 31 619 2114 658186488 658187982 0.000000e+00 1820.0
20 TraesCS3B01G446500 chr3A 88.809 1528 106 31 619 2114 655936991 655935497 0.000000e+00 1814.0
21 TraesCS3B01G446500 chr3A 88.140 371 27 8 1 366 655995834 655995476 2.730000e-115 425.0
22 TraesCS3B01G446500 chr3A 98.230 226 2 1 2741 2966 729518738 729518961 7.710000e-106 394.0
23 TraesCS3B01G446500 chr3A 88.000 150 16 2 844 992 655987405 655987257 3.040000e-40 176.0
24 TraesCS3B01G446500 chr3A 90.000 100 6 1 2648 2747 655993371 655993276 3.100000e-25 126.0
25 TraesCS3B01G446500 chr3A 90.541 74 4 3 2571 2642 653223099 653223171 8.750000e-16 95.3
26 TraesCS3B01G446500 chr7A 99.550 222 1 0 2745 2966 693441291 693441512 3.560000e-109 405.0
27 TraesCS3B01G446500 chr7A 89.873 79 5 3 2572 2647 688450248 688450170 6.770000e-17 99.0
28 TraesCS3B01G446500 chr1B 99.545 220 1 0 2747 2966 60389626 60389407 4.600000e-108 401.0
29 TraesCS3B01G446500 chr1B 97.391 230 4 2 2737 2966 48262036 48261809 9.970000e-105 390.0
30 TraesCS3B01G446500 chr1B 88.750 80 5 3 2571 2647 455164129 455164051 8.750000e-16 95.3
31 TraesCS3B01G446500 chr6B 98.230 226 3 1 2741 2966 560724691 560724915 7.710000e-106 394.0
32 TraesCS3B01G446500 chr6B 96.610 236 6 1 2733 2966 263049212 263049447 9.970000e-105 390.0
33 TraesCS3B01G446500 chr2A 94.071 253 10 5 2717 2966 6304652 6304902 2.160000e-101 379.0
34 TraesCS3B01G446500 chr7B 82.278 237 35 5 332 562 28394086 28394321 6.480000e-47 198.0
35 TraesCS3B01G446500 chr7B 91.667 72 4 2 2571 2641 369857929 369857999 6.770000e-17 99.0
36 TraesCS3B01G446500 chr1D 91.892 74 5 1 2569 2642 300834994 300834922 5.230000e-18 102.0
37 TraesCS3B01G446500 chr1D 90.411 73 5 1 2572 2642 45683384 45683312 8.750000e-16 95.3
38 TraesCS3B01G446500 chr5D 91.549 71 3 3 2572 2640 24334210 24334141 8.750000e-16 95.3
39 TraesCS3B01G446500 chr5A 88.462 78 4 4 2569 2642 554751395 554751471 4.070000e-14 89.8
40 TraesCS3B01G446500 chr2D 81.522 92 16 1 326 416 304226222 304226313 1.140000e-09 75.0
41 TraesCS3B01G446500 chr4D 92.500 40 2 1 326 365 16139334 16139372 4.130000e-04 56.5
42 TraesCS3B01G446500 chr6A 100.000 29 0 0 2147 2175 86319291 86319263 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G446500 chr3B 685908153 685911118 2965 True 5478.000000 5478 100.000000 1 2966 1 chr3B.!!$R3 2965
1 TraesCS3B01G446500 chr3B 685874062 685875546 1484 True 1742.000000 1742 88.084000 628 2114 1 chr3B.!!$R2 1486
2 TraesCS3B01G446500 chr3B 685940516 685942038 1522 True 1694.000000 1694 87.061000 580 2085 1 chr3B.!!$R4 1505
3 TraesCS3B01G446500 chr3B 685978978 685980494 1516 True 1690.000000 1690 87.019000 580 2086 1 chr3B.!!$R5 1506
4 TraesCS3B01G446500 chr3B 685762450 685763710 1260 True 856.500000 1587 90.682500 832 2113 2 chr3B.!!$R9 1281
5 TraesCS3B01G446500 chr3D 520676554 520684435 7881 True 1908.333333 3910 92.604333 1 2745 3 chr3D.!!$R3 2744
6 TraesCS3B01G446500 chr3D 520702429 520703919 1490 True 1742.000000 1742 87.997000 605 2086 1 chr3D.!!$R1 1481
7 TraesCS3B01G446500 chr3D 520639153 520642203 3050 True 935.000000 1583 86.679667 628 2115 3 chr3D.!!$R2 1487
8 TraesCS3B01G446500 chr3A 658186488 658187982 1494 False 1820.000000 1820 88.874000 619 2114 1 chr3A.!!$F2 1495
9 TraesCS3B01G446500 chr3A 655935497 655936991 1494 True 1814.000000 1814 88.809000 619 2114 1 chr3A.!!$R1 1495
10 TraesCS3B01G446500 chr3A 655993276 655995834 2558 True 1216.666667 3099 90.577333 1 2747 3 chr3A.!!$R3 2746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
117 5358 0.039256 GCTCTTTTGCAACGCATGGA 60.039 50.0 0.0 0.0 38.76 3.41 F
1302 6626 0.689080 ACCTCCCAGCGATCATGACT 60.689 55.0 0.0 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1545 6869 0.039035 ACTTCTCCTGGAGCGTCTCT 59.961 55.0 19.08 0.0 0.00 3.1 R
2602 9535 0.037512 CTCCTCGGCCTATGCATCAG 60.038 60.0 0.19 0.0 40.13 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 5354 2.228582 TGTATGCTCTTTTGCAACGCAT 59.771 40.909 21.01 21.01 46.61 4.73
117 5358 0.039256 GCTCTTTTGCAACGCATGGA 60.039 50.000 0.00 0.00 38.76 3.41
232 5474 2.103373 GTGTGGCTGATCTGGTCTCTA 58.897 52.381 1.46 0.00 0.00 2.43
299 5545 2.112297 ACAAACCATGGTCGCCGT 59.888 55.556 20.07 10.13 0.00 5.68
323 5569 7.375808 CGTGGAATGCAACATATACAACATAAC 59.624 37.037 0.00 0.00 0.00 1.89
679 5937 1.257743 TTCAGGACGACCTCTTCCAG 58.742 55.000 2.57 0.00 45.94 3.86
1189 6513 3.700970 TCATCCAGAACGCCCGCA 61.701 61.111 0.00 0.00 0.00 5.69
1190 6514 3.499737 CATCCAGAACGCCCGCAC 61.500 66.667 0.00 0.00 0.00 5.34
1290 6614 2.879233 GCTGGACAACGACCTCCCA 61.879 63.158 0.00 0.00 0.00 4.37
1302 6626 0.689080 ACCTCCCAGCGATCATGACT 60.689 55.000 0.00 0.00 0.00 3.41
1545 6869 0.464013 CGAGCCCCTTCGACTCTCTA 60.464 60.000 0.00 0.00 43.03 2.43
1582 6906 1.494721 AGTTCAGAAACTTGGGCCTCA 59.505 47.619 4.53 0.00 43.28 3.86
1589 6913 0.110486 AACTTGGGCCTCAACGACAT 59.890 50.000 4.53 0.00 0.00 3.06
1700 7024 0.532862 ACGCTGGTGAACCTTGACAG 60.533 55.000 0.37 0.00 36.82 3.51
1754 7078 2.594303 CAACCTCTTGCGTGGCCA 60.594 61.111 0.00 0.00 0.00 5.36
1755 7079 1.973281 CAACCTCTTGCGTGGCCAT 60.973 57.895 9.72 0.00 0.00 4.40
1847 8768 1.908483 GGTTCTCCGGAAGCCAGAT 59.092 57.895 5.23 0.00 42.22 2.90
1851 8772 0.399091 TCTCCGGAAGCCAGATGGAT 60.399 55.000 5.23 0.00 37.39 3.41
1875 8796 1.024579 TCAAGAATTTCGCGGCCTCC 61.025 55.000 6.13 0.00 0.00 4.30
1898 8819 5.046014 CCATGGTCAAAATGGGGAACATAAA 60.046 40.000 2.57 0.00 39.34 1.40
2139 9062 3.252458 AGTGTTACAAGAAAACGGGATGC 59.748 43.478 0.00 0.00 0.00 3.91
2173 9096 1.066002 ACCGAACACTCTTCGACGAAA 59.934 47.619 12.03 2.42 43.97 3.46
2178 9101 4.027621 CGAACACTCTTCGACGAAATATGG 60.028 45.833 12.03 0.00 43.97 2.74
2224 9147 8.352201 TGGACTTGATACAGAACTCAATTTTTG 58.648 33.333 0.00 0.00 31.39 2.44
2234 9157 9.603921 ACAGAACTCAATTTTTGACATCATTTT 57.396 25.926 0.00 0.00 35.46 1.82
2369 9295 6.904626 AGACTTTCCATGGAATTGCTAGTAT 58.095 36.000 27.53 20.28 33.79 2.12
2372 9298 6.543831 ACTTTCCATGGAATTGCTAGTATGTC 59.456 38.462 27.53 0.00 33.79 3.06
2416 9342 6.401153 GCTTGTTGAAGACTTTCCGTGTATAG 60.401 42.308 0.00 0.00 32.09 1.31
2417 9343 4.927425 TGTTGAAGACTTTCCGTGTATAGC 59.073 41.667 0.00 0.00 32.09 2.97
2508 9440 1.888512 GATGTGGACAGGTTGCATGTT 59.111 47.619 0.00 0.00 0.00 2.71
2511 9443 3.291584 TGTGGACAGGTTGCATGTTAAA 58.708 40.909 0.00 0.00 0.00 1.52
2540 9473 9.735362 AATCATATATTAGGAGGCCTCTATTGA 57.265 33.333 31.36 22.19 34.61 2.57
2541 9474 9.735362 ATCATATATTAGGAGGCCTCTATTGAA 57.265 33.333 31.36 17.78 34.61 2.69
2542 9475 9.560860 TCATATATTAGGAGGCCTCTATTGAAA 57.439 33.333 31.36 16.30 34.61 2.69
2599 9532 4.990543 ATAAATGTGGTCGTATGCATCG 57.009 40.909 0.19 7.36 0.00 3.84
2600 9533 2.309528 AATGTGGTCGTATGCATCGT 57.690 45.000 0.19 0.00 0.00 3.73
2601 9534 2.309528 ATGTGGTCGTATGCATCGTT 57.690 45.000 0.19 0.00 0.00 3.85
2602 9535 1.635844 TGTGGTCGTATGCATCGTTC 58.364 50.000 0.19 5.44 0.00 3.95
2603 9536 1.203758 TGTGGTCGTATGCATCGTTCT 59.796 47.619 0.19 0.00 0.00 3.01
2604 9537 1.588404 GTGGTCGTATGCATCGTTCTG 59.412 52.381 0.19 0.00 0.00 3.02
2605 9538 1.474879 TGGTCGTATGCATCGTTCTGA 59.525 47.619 0.19 0.00 0.00 3.27
2606 9539 2.100749 TGGTCGTATGCATCGTTCTGAT 59.899 45.455 0.19 0.00 38.01 2.90
2615 9548 2.175878 ATCGTTCTGATGCATAGGCC 57.824 50.000 0.00 0.00 40.13 5.19
2616 9549 0.249447 TCGTTCTGATGCATAGGCCG 60.249 55.000 0.00 0.00 40.13 6.13
2617 9550 0.249447 CGTTCTGATGCATAGGCCGA 60.249 55.000 0.00 0.00 40.13 5.54
2618 9551 1.506493 GTTCTGATGCATAGGCCGAG 58.494 55.000 0.00 0.00 40.13 4.63
2619 9552 0.394192 TTCTGATGCATAGGCCGAGG 59.606 55.000 0.00 0.00 40.13 4.63
2620 9553 0.469892 TCTGATGCATAGGCCGAGGA 60.470 55.000 0.20 0.00 40.13 3.71
2621 9554 0.037512 CTGATGCATAGGCCGAGGAG 60.038 60.000 0.20 0.00 40.13 3.69
2622 9555 0.760567 TGATGCATAGGCCGAGGAGT 60.761 55.000 0.20 0.00 40.13 3.85
2623 9556 0.037790 GATGCATAGGCCGAGGAGTC 60.038 60.000 0.20 0.00 40.13 3.36
2624 9557 1.476007 ATGCATAGGCCGAGGAGTCC 61.476 60.000 0.20 0.00 40.13 3.85
2625 9558 2.873525 GCATAGGCCGAGGAGTCCC 61.874 68.421 5.25 0.00 0.00 4.46
2626 9559 2.201771 ATAGGCCGAGGAGTCCCC 59.798 66.667 5.25 0.00 0.00 4.81
2638 9571 4.536295 AGGAGTCCCCTTTCAAAAAGAA 57.464 40.909 5.25 0.00 44.85 2.52
2639 9572 4.878968 AGGAGTCCCCTTTCAAAAAGAAA 58.121 39.130 5.25 0.00 44.85 2.52
2640 9573 5.277250 AGGAGTCCCCTTTCAAAAAGAAAA 58.723 37.500 5.25 0.00 44.85 2.29
2641 9574 5.724370 AGGAGTCCCCTTTCAAAAAGAAAAA 59.276 36.000 5.25 0.00 44.85 1.94
2685 9618 2.285368 TCTCGGCCCATTCCTGGT 60.285 61.111 0.00 0.00 41.37 4.00
2753 9686 8.990163 TTAAGGAAAATTAAACTCTCACTGGT 57.010 30.769 0.00 0.00 0.00 4.00
2754 9687 6.884280 AGGAAAATTAAACTCTCACTGGTG 57.116 37.500 0.00 0.00 0.00 4.17
2755 9688 5.770162 AGGAAAATTAAACTCTCACTGGTGG 59.230 40.000 0.70 0.00 0.00 4.61
2756 9689 5.768164 GGAAAATTAAACTCTCACTGGTGGA 59.232 40.000 0.70 0.00 0.00 4.02
2757 9690 6.264518 GGAAAATTAAACTCTCACTGGTGGAA 59.735 38.462 0.70 0.00 0.00 3.53
2758 9691 7.201875 GGAAAATTAAACTCTCACTGGTGGAAA 60.202 37.037 0.70 0.00 0.00 3.13
2759 9692 7.654022 AAATTAAACTCTCACTGGTGGAAAA 57.346 32.000 0.70 0.00 0.00 2.29
2760 9693 7.654022 AATTAAACTCTCACTGGTGGAAAAA 57.346 32.000 0.70 0.00 0.00 1.94
2761 9694 6.693315 TTAAACTCTCACTGGTGGAAAAAG 57.307 37.500 0.70 0.00 0.00 2.27
2762 9695 3.214696 ACTCTCACTGGTGGAAAAAGG 57.785 47.619 0.70 0.00 0.00 3.11
2763 9696 2.158608 ACTCTCACTGGTGGAAAAAGGG 60.159 50.000 0.70 0.00 0.00 3.95
2764 9697 0.961753 CTCACTGGTGGAAAAAGGGC 59.038 55.000 0.70 0.00 0.00 5.19
2765 9698 0.469144 TCACTGGTGGAAAAAGGGCC 60.469 55.000 0.00 0.00 0.00 5.80
2766 9699 0.469892 CACTGGTGGAAAAAGGGCCT 60.470 55.000 0.00 0.00 0.00 5.19
2767 9700 0.264657 ACTGGTGGAAAAAGGGCCTT 59.735 50.000 14.48 14.48 0.00 4.35
2768 9701 1.343985 ACTGGTGGAAAAAGGGCCTTT 60.344 47.619 25.68 25.68 34.94 3.11
2769 9702 1.070601 CTGGTGGAAAAAGGGCCTTTG 59.929 52.381 31.06 12.80 33.64 2.77
2770 9703 0.396435 GGTGGAAAAAGGGCCTTTGG 59.604 55.000 31.06 0.00 33.64 3.28
2771 9704 1.128200 GTGGAAAAAGGGCCTTTGGT 58.872 50.000 31.06 21.81 33.64 3.67
2772 9705 1.070134 GTGGAAAAAGGGCCTTTGGTC 59.930 52.381 31.06 27.31 33.64 4.02
2773 9706 0.317160 GGAAAAAGGGCCTTTGGTCG 59.683 55.000 31.06 0.00 33.64 4.79
2774 9707 0.319555 GAAAAAGGGCCTTTGGTCGC 60.320 55.000 31.06 14.98 33.64 5.19
2775 9708 2.082629 AAAAAGGGCCTTTGGTCGCG 62.083 55.000 31.06 0.00 33.64 5.87
2779 9712 3.733960 GGCCTTTGGTCGCGGTTC 61.734 66.667 6.13 0.00 0.00 3.62
2780 9713 4.084888 GCCTTTGGTCGCGGTTCG 62.085 66.667 6.13 0.00 40.15 3.95
2791 9724 2.953821 CGGTTCGCAACTGCCATT 59.046 55.556 0.00 0.00 37.91 3.16
2792 9725 2.167161 CGGTTCGCAACTGCCATTA 58.833 52.632 0.00 0.00 37.91 1.90
2793 9726 0.096976 CGGTTCGCAACTGCCATTAG 59.903 55.000 0.00 0.00 37.91 1.73
2794 9727 1.165270 GGTTCGCAACTGCCATTAGT 58.835 50.000 0.00 0.00 37.91 2.24
2795 9728 1.130561 GGTTCGCAACTGCCATTAGTC 59.869 52.381 0.00 0.00 37.91 2.59
2796 9729 1.075542 TTCGCAACTGCCATTAGTCG 58.924 50.000 0.00 0.00 37.91 4.18
2797 9730 1.060937 CGCAACTGCCATTAGTCGC 59.939 57.895 0.00 0.00 37.91 5.19
2798 9731 1.060937 GCAACTGCCATTAGTCGCG 59.939 57.895 0.00 0.00 34.31 5.87
2799 9732 1.715585 CAACTGCCATTAGTCGCGG 59.284 57.895 6.13 0.00 37.39 6.46
2800 9733 1.019278 CAACTGCCATTAGTCGCGGT 61.019 55.000 6.13 0.00 46.47 5.68
2801 9734 1.295423 ACTGCCATTAGTCGCGGTT 59.705 52.632 6.13 0.00 41.86 4.44
2802 9735 1.019278 ACTGCCATTAGTCGCGGTTG 61.019 55.000 6.13 0.00 41.86 3.77
2803 9736 2.309764 CTGCCATTAGTCGCGGTTGC 62.310 60.000 6.13 0.28 37.91 4.17
2831 9764 4.781959 CCGAACGGGCGCGACTAA 62.782 66.667 30.98 0.00 0.00 2.24
2832 9765 2.806198 CGAACGGGCGCGACTAAA 60.806 61.111 30.98 0.00 0.00 1.85
2833 9766 2.785105 CGAACGGGCGCGACTAAAG 61.785 63.158 30.98 10.35 0.00 1.85
2834 9767 2.433664 AACGGGCGCGACTAAAGG 60.434 61.111 30.98 0.00 0.00 3.11
2858 9791 2.854522 CCCCCTTTAGTCGCAGTTG 58.145 57.895 0.00 0.00 0.00 3.16
2859 9792 1.305930 CCCCCTTTAGTCGCAGTTGC 61.306 60.000 0.00 0.00 37.78 4.17
2860 9793 0.321653 CCCCTTTAGTCGCAGTTGCT 60.322 55.000 2.29 0.00 39.32 3.91
2861 9794 1.523758 CCCTTTAGTCGCAGTTGCTT 58.476 50.000 2.29 0.00 39.32 3.91
2862 9795 2.614481 CCCCTTTAGTCGCAGTTGCTTA 60.614 50.000 2.29 0.00 39.32 3.09
2863 9796 3.071479 CCCTTTAGTCGCAGTTGCTTAA 58.929 45.455 2.29 0.00 39.32 1.85
2864 9797 3.125316 CCCTTTAGTCGCAGTTGCTTAAG 59.875 47.826 0.00 0.00 39.32 1.85
2865 9798 3.994392 CCTTTAGTCGCAGTTGCTTAAGA 59.006 43.478 6.67 0.00 39.32 2.10
2866 9799 4.451096 CCTTTAGTCGCAGTTGCTTAAGAA 59.549 41.667 6.67 0.00 39.32 2.52
2867 9800 4.985044 TTAGTCGCAGTTGCTTAAGAAC 57.015 40.909 6.67 8.02 39.32 3.01
2868 9801 2.143925 AGTCGCAGTTGCTTAAGAACC 58.856 47.619 6.67 0.00 39.32 3.62
2869 9802 1.136336 GTCGCAGTTGCTTAAGAACCG 60.136 52.381 6.67 8.00 39.32 4.44
2870 9803 0.452784 CGCAGTTGCTTAAGAACCGC 60.453 55.000 6.67 10.47 39.32 5.68
2871 9804 0.452784 GCAGTTGCTTAAGAACCGCG 60.453 55.000 6.67 0.00 38.21 6.46
2872 9805 1.144969 CAGTTGCTTAAGAACCGCGA 58.855 50.000 8.23 0.00 0.00 5.87
2873 9806 1.136336 CAGTTGCTTAAGAACCGCGAC 60.136 52.381 8.23 1.13 38.13 5.19
2874 9807 1.145803 GTTGCTTAAGAACCGCGACT 58.854 50.000 8.23 0.30 35.64 4.18
2875 9808 2.029649 AGTTGCTTAAGAACCGCGACTA 60.030 45.455 8.23 0.00 44.33 2.59
2876 9809 2.728690 TGCTTAAGAACCGCGACTAA 57.271 45.000 8.23 0.00 0.00 2.24
2877 9810 3.029320 TGCTTAAGAACCGCGACTAAA 57.971 42.857 8.23 0.00 0.00 1.85
2878 9811 2.991190 TGCTTAAGAACCGCGACTAAAG 59.009 45.455 8.23 4.60 0.00 1.85
2879 9812 2.347755 GCTTAAGAACCGCGACTAAAGG 59.652 50.000 8.23 0.00 0.00 3.11
2880 9813 2.000429 TAAGAACCGCGACTAAAGGC 58.000 50.000 8.23 0.00 0.00 4.35
2881 9814 0.672711 AAGAACCGCGACTAAAGGCC 60.673 55.000 8.23 0.00 0.00 5.19
2882 9815 2.046604 AACCGCGACTAAAGGCCC 60.047 61.111 8.23 0.00 0.00 5.80
2883 9816 3.945304 AACCGCGACTAAAGGCCCG 62.945 63.158 8.23 0.00 0.00 6.13
2884 9817 4.446413 CCGCGACTAAAGGCCCGT 62.446 66.667 8.23 0.00 0.00 5.28
2885 9818 2.884207 CGCGACTAAAGGCCCGTC 60.884 66.667 0.00 0.02 0.00 4.79
2886 9819 2.510918 GCGACTAAAGGCCCGTCC 60.511 66.667 0.00 0.00 0.00 4.79
2887 9820 2.975536 CGACTAAAGGCCCGTCCA 59.024 61.111 0.00 0.00 37.29 4.02
2888 9821 1.447314 CGACTAAAGGCCCGTCCAC 60.447 63.158 0.00 0.00 37.29 4.02
2889 9822 1.447314 GACTAAAGGCCCGTCCACG 60.447 63.158 0.00 0.00 37.29 4.94
2890 9823 2.163601 GACTAAAGGCCCGTCCACGT 62.164 60.000 0.00 0.00 37.29 4.49
2891 9824 1.740296 CTAAAGGCCCGTCCACGTG 60.740 63.158 9.08 9.08 37.29 4.49
2892 9825 3.242897 TAAAGGCCCGTCCACGTGG 62.243 63.158 29.26 29.26 37.29 4.94
2925 9858 3.078836 CGGGGCGGAGGACCTTTA 61.079 66.667 0.00 0.00 43.03 1.85
2926 9859 2.908796 GGGGCGGAGGACCTTTAG 59.091 66.667 0.00 0.00 43.03 1.85
2927 9860 1.993948 GGGGCGGAGGACCTTTAGT 60.994 63.158 0.00 0.00 43.03 2.24
2928 9861 1.521141 GGGCGGAGGACCTTTAGTC 59.479 63.158 0.00 0.00 45.51 2.59
2936 9869 3.808583 GACCTTTAGTCGCGGTTCT 57.191 52.632 6.13 5.42 35.30 3.01
2937 9870 2.075979 GACCTTTAGTCGCGGTTCTT 57.924 50.000 6.13 0.00 35.30 2.52
2938 9871 1.991264 GACCTTTAGTCGCGGTTCTTC 59.009 52.381 6.13 0.00 35.30 2.87
2939 9872 1.617357 ACCTTTAGTCGCGGTTCTTCT 59.383 47.619 6.13 0.00 0.00 2.85
2940 9873 1.993370 CCTTTAGTCGCGGTTCTTCTG 59.007 52.381 6.13 0.00 0.00 3.02
2941 9874 1.993370 CTTTAGTCGCGGTTCTTCTGG 59.007 52.381 6.13 0.00 0.00 3.86
2942 9875 0.389426 TTAGTCGCGGTTCTTCTGGC 60.389 55.000 6.13 0.00 0.00 4.85
2943 9876 2.221906 TAGTCGCGGTTCTTCTGGCC 62.222 60.000 6.13 0.00 0.00 5.36
2944 9877 3.621805 TCGCGGTTCTTCTGGCCA 61.622 61.111 4.71 4.71 0.00 5.36
2945 9878 2.668212 CGCGGTTCTTCTGGCCAA 60.668 61.111 7.01 0.00 0.00 4.52
2946 9879 2.954611 GCGGTTCTTCTGGCCAAC 59.045 61.111 7.01 0.29 0.00 3.77
2947 9880 2.626780 GCGGTTCTTCTGGCCAACC 61.627 63.158 12.82 12.82 36.91 3.77
2948 9881 3.668386 GGTTCTTCTGGCCAACCG 58.332 61.111 7.01 0.00 39.70 4.44
2949 9882 2.626780 GGTTCTTCTGGCCAACCGC 61.627 63.158 7.01 0.00 39.70 5.68
2950 9883 2.668212 TTCTTCTGGCCAACCGCG 60.668 61.111 7.01 0.00 39.70 6.46
2951 9884 3.171828 TTCTTCTGGCCAACCGCGA 62.172 57.895 8.23 0.00 39.70 5.87
2952 9885 3.423154 CTTCTGGCCAACCGCGAC 61.423 66.667 8.23 0.00 39.70 5.19
2953 9886 3.883744 CTTCTGGCCAACCGCGACT 62.884 63.158 8.23 0.00 39.70 4.18
2954 9887 2.501223 CTTCTGGCCAACCGCGACTA 62.501 60.000 8.23 0.00 39.70 2.59
2955 9888 2.047655 CTGGCCAACCGCGACTAA 60.048 61.111 8.23 0.00 39.70 2.24
2956 9889 1.669760 CTGGCCAACCGCGACTAAA 60.670 57.895 8.23 0.00 39.70 1.85
2957 9890 1.635663 CTGGCCAACCGCGACTAAAG 61.636 60.000 8.23 0.00 39.70 1.85
2958 9891 2.396157 GGCCAACCGCGACTAAAGG 61.396 63.158 8.23 1.23 38.94 3.11
2959 9892 3.035576 GCCAACCGCGACTAAAGGC 62.036 63.158 8.23 8.51 0.00 4.35
2960 9893 2.396157 CCAACCGCGACTAAAGGCC 61.396 63.158 8.23 0.00 0.00 5.19
2961 9894 2.433664 AACCGCGACTAAAGGCCG 60.434 61.111 8.23 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 5265 8.844865 ATATGCCTATAGTATCCTCATGTTGA 57.155 34.615 0.00 0.00 0.00 3.18
91 5325 3.438434 TGCGTTGCAAAAGAGCATACATA 59.562 39.130 0.00 0.00 45.19 2.29
114 5354 6.442541 TTCTTCTAGTGGGTTAATTGTCCA 57.557 37.500 0.00 0.00 0.00 4.02
117 5358 7.295340 ACCTTTTCTTCTAGTGGGTTAATTGT 58.705 34.615 0.00 0.00 0.00 2.71
177 5419 9.396022 CCTTAGCTTACATTTCTTCCATCTTTA 57.604 33.333 0.00 0.00 0.00 1.85
299 5545 8.286191 TGTTATGTTGTATATGTTGCATTCCA 57.714 30.769 0.00 0.00 0.00 3.53
545 5796 1.404986 CCCGCGTTCCTAAATGTGAGA 60.405 52.381 4.92 0.00 34.45 3.27
659 5916 1.827969 CTGGAAGAGGTCGTCCTGAAT 59.172 52.381 5.76 0.00 45.24 2.57
660 5917 1.257743 CTGGAAGAGGTCGTCCTGAA 58.742 55.000 5.76 0.00 45.24 3.02
679 5937 2.223021 TGAATGATTAGCGCGAACAAGC 60.223 45.455 12.10 2.81 0.00 4.01
842 6151 9.351570 GAACGGTTTGTAAGCTATATATAGTCC 57.648 37.037 18.81 5.64 32.96 3.85
1201 6525 4.119363 GAGGCTGGCTGGGATGCA 62.119 66.667 9.06 0.00 34.04 3.96
1290 6614 2.361757 CTCCTTCTCAGTCATGATCGCT 59.638 50.000 0.00 0.00 34.12 4.93
1302 6626 1.613630 GGCAGGGACCTCCTTCTCA 60.614 63.158 0.00 0.00 45.47 3.27
1545 6869 0.039035 ACTTCTCCTGGAGCGTCTCT 59.961 55.000 19.08 0.00 0.00 3.10
1589 6913 1.701031 TTGGAGGGCGACAAGGTCAA 61.701 55.000 0.00 0.00 32.09 3.18
1700 7024 0.680061 AAAGACGTCAGGGGTGACTC 59.320 55.000 19.50 1.66 36.71 3.36
1809 8730 4.892379 CGAACGATCGGCGCGGTA 62.892 66.667 20.98 2.33 45.32 4.02
1847 8768 4.379394 CCGCGAAATTCTTGAAGAAATCCA 60.379 41.667 12.10 0.00 37.82 3.41
1851 8772 2.351350 GGCCGCGAAATTCTTGAAGAAA 60.351 45.455 12.10 0.00 37.82 2.52
1875 8796 5.674052 TTATGTTCCCCATTTTGACCATG 57.326 39.130 0.00 0.00 34.86 3.66
1916 8837 3.372025 GCAGTTGTTCCTAATCTCCCCAT 60.372 47.826 0.00 0.00 0.00 4.00
2110 9033 7.499895 TCCCGTTTTCTTGTAACACTCTAAAAT 59.500 33.333 0.00 0.00 0.00 1.82
2115 9038 4.411256 TCCCGTTTTCTTGTAACACTCT 57.589 40.909 0.00 0.00 0.00 3.24
2139 9062 3.963724 GTGTTCGGTTTGTACATGAAACG 59.036 43.478 10.76 10.76 34.67 3.60
2173 9096 6.725834 ACACTTTCTGTTTGAAATCCCCATAT 59.274 34.615 0.00 0.00 42.96 1.78
2178 9101 4.340950 TCCACACTTTCTGTTTGAAATCCC 59.659 41.667 0.00 0.00 42.96 3.85
2369 9295 7.333528 AGCAACACTTTTGATTTAGAAGACA 57.666 32.000 0.00 0.00 0.00 3.41
2372 9298 7.992180 ACAAGCAACACTTTTGATTTAGAAG 57.008 32.000 0.00 0.00 36.04 2.85
2386 9312 4.105486 GGAAAGTCTTCAACAAGCAACAC 58.895 43.478 0.00 0.00 32.75 3.32
2416 9342 3.119065 ACGAGGGACTTTTAGCTTCTAGC 60.119 47.826 0.00 0.00 41.55 3.42
2417 9343 4.722361 ACGAGGGACTTTTAGCTTCTAG 57.278 45.455 0.00 0.00 41.55 2.43
2476 9403 4.643334 CCTGTCCACATCATCAATCAACAT 59.357 41.667 0.00 0.00 0.00 2.71
2477 9404 4.011698 CCTGTCCACATCATCAATCAACA 58.988 43.478 0.00 0.00 0.00 3.33
2478 9405 4.012374 ACCTGTCCACATCATCAATCAAC 58.988 43.478 0.00 0.00 0.00 3.18
2573 9506 8.652463 CGATGCATACGACCACATTTATAAATA 58.348 33.333 10.34 0.00 0.00 1.40
2574 9507 7.172532 ACGATGCATACGACCACATTTATAAAT 59.827 33.333 20.36 4.81 34.70 1.40
2575 9508 6.480651 ACGATGCATACGACCACATTTATAAA 59.519 34.615 20.36 0.00 34.70 1.40
2577 9510 5.534407 ACGATGCATACGACCACATTTATA 58.466 37.500 20.36 0.00 34.70 0.98
2578 9511 4.377021 ACGATGCATACGACCACATTTAT 58.623 39.130 20.36 0.00 34.70 1.40
2579 9512 3.787785 ACGATGCATACGACCACATTTA 58.212 40.909 20.36 0.00 34.70 1.40
2580 9513 2.627945 ACGATGCATACGACCACATTT 58.372 42.857 20.36 0.00 34.70 2.32
2581 9514 2.309528 ACGATGCATACGACCACATT 57.690 45.000 20.36 0.00 34.70 2.71
2582 9515 2.159099 AGAACGATGCATACGACCACAT 60.159 45.455 20.36 0.00 34.70 3.21
2583 9516 1.203758 AGAACGATGCATACGACCACA 59.796 47.619 20.36 0.00 34.70 4.17
2584 9517 1.588404 CAGAACGATGCATACGACCAC 59.412 52.381 20.36 10.77 34.70 4.16
2585 9518 1.474879 TCAGAACGATGCATACGACCA 59.525 47.619 20.36 5.97 34.70 4.02
2586 9519 2.203800 TCAGAACGATGCATACGACC 57.796 50.000 20.36 12.84 34.70 4.79
2587 9520 3.760264 CATCAGAACGATGCATACGAC 57.240 47.619 20.36 14.47 44.95 4.34
2596 9529 1.606480 CGGCCTATGCATCAGAACGAT 60.606 52.381 0.19 0.00 40.13 3.73
2597 9530 0.249447 CGGCCTATGCATCAGAACGA 60.249 55.000 0.19 0.00 40.13 3.85
2598 9531 0.249447 TCGGCCTATGCATCAGAACG 60.249 55.000 0.19 3.31 40.13 3.95
2599 9532 1.506493 CTCGGCCTATGCATCAGAAC 58.494 55.000 0.19 0.00 40.13 3.01
2600 9533 0.394192 CCTCGGCCTATGCATCAGAA 59.606 55.000 0.19 0.00 40.13 3.02
2601 9534 0.469892 TCCTCGGCCTATGCATCAGA 60.470 55.000 0.19 0.00 40.13 3.27
2602 9535 0.037512 CTCCTCGGCCTATGCATCAG 60.038 60.000 0.19 0.00 40.13 2.90
2603 9536 0.760567 ACTCCTCGGCCTATGCATCA 60.761 55.000 0.19 0.00 40.13 3.07
2604 9537 0.037790 GACTCCTCGGCCTATGCATC 60.038 60.000 0.19 0.00 40.13 3.91
2605 9538 1.476007 GGACTCCTCGGCCTATGCAT 61.476 60.000 3.79 3.79 40.13 3.96
2606 9539 2.134287 GGACTCCTCGGCCTATGCA 61.134 63.158 0.00 0.00 40.13 3.96
2607 9540 2.737830 GGACTCCTCGGCCTATGC 59.262 66.667 0.00 0.00 0.00 3.14
2608 9541 2.210711 GGGGACTCCTCGGCCTATG 61.211 68.421 0.00 0.00 0.00 2.23
2609 9542 2.201771 GGGGACTCCTCGGCCTAT 59.798 66.667 0.00 0.00 0.00 2.57
2610 9543 3.028098 AGGGGACTCCTCGGCCTA 61.028 66.667 0.00 0.00 44.06 3.93
2618 9551 5.607939 TTTTCTTTTTGAAAGGGGACTCC 57.392 39.130 1.04 0.00 44.40 3.85
2642 9575 1.135915 TCAGCCGCATTGTGTGTTTTT 59.864 42.857 0.00 0.00 0.00 1.94
2643 9576 0.743688 TCAGCCGCATTGTGTGTTTT 59.256 45.000 0.00 0.00 0.00 2.43
2644 9577 0.961019 ATCAGCCGCATTGTGTGTTT 59.039 45.000 0.00 0.00 0.00 2.83
2645 9578 0.523072 GATCAGCCGCATTGTGTGTT 59.477 50.000 0.00 0.00 0.00 3.32
2646 9579 1.308069 GGATCAGCCGCATTGTGTGT 61.308 55.000 0.00 0.00 0.00 3.72
2647 9580 1.430632 GGATCAGCCGCATTGTGTG 59.569 57.895 0.00 0.00 0.00 3.82
2648 9581 3.909662 GGATCAGCCGCATTGTGT 58.090 55.556 0.00 0.00 0.00 3.72
2672 9605 0.395724 CCACTTACCAGGAATGGGCC 60.396 60.000 0.00 0.00 0.00 5.80
2685 9618 4.141287 ACTTTGCATGTAGTTGCCACTTA 58.859 39.130 0.00 0.00 42.06 2.24
2747 9680 0.469892 AGGCCCTTTTTCCACCAGTG 60.470 55.000 0.00 0.00 0.00 3.66
2748 9681 0.264657 AAGGCCCTTTTTCCACCAGT 59.735 50.000 0.00 0.00 0.00 4.00
2749 9682 1.070601 CAAAGGCCCTTTTTCCACCAG 59.929 52.381 5.84 0.00 30.60 4.00
2750 9683 1.127343 CAAAGGCCCTTTTTCCACCA 58.873 50.000 5.84 0.00 30.60 4.17
2751 9684 0.396435 CCAAAGGCCCTTTTTCCACC 59.604 55.000 5.84 0.00 30.60 4.61
2752 9685 1.070134 GACCAAAGGCCCTTTTTCCAC 59.930 52.381 5.84 0.00 30.60 4.02
2753 9686 1.419381 GACCAAAGGCCCTTTTTCCA 58.581 50.000 5.84 0.00 30.60 3.53
2754 9687 0.317160 CGACCAAAGGCCCTTTTTCC 59.683 55.000 5.84 0.00 30.60 3.13
2755 9688 0.319555 GCGACCAAAGGCCCTTTTTC 60.320 55.000 5.84 5.31 30.60 2.29
2756 9689 1.745890 GCGACCAAAGGCCCTTTTT 59.254 52.632 5.84 0.00 30.60 1.94
2757 9690 2.561037 CGCGACCAAAGGCCCTTTT 61.561 57.895 5.84 0.00 30.60 2.27
2758 9691 2.983592 CGCGACCAAAGGCCCTTT 60.984 61.111 1.93 1.93 33.58 3.11
2762 9695 3.733960 GAACCGCGACCAAAGGCC 61.734 66.667 8.23 0.00 0.00 5.19
2763 9696 4.084888 CGAACCGCGACCAAAGGC 62.085 66.667 8.23 0.00 44.57 4.35
2764 9697 4.084888 GCGAACCGCGACCAAAGG 62.085 66.667 8.23 0.00 44.55 3.11
2774 9707 0.096976 CTAATGGCAGTTGCGAACCG 59.903 55.000 0.00 0.00 43.26 4.44
2775 9708 1.130561 GACTAATGGCAGTTGCGAACC 59.869 52.381 0.00 0.00 43.26 3.62
2776 9709 1.201921 CGACTAATGGCAGTTGCGAAC 60.202 52.381 0.00 0.00 43.26 3.95
2777 9710 1.075542 CGACTAATGGCAGTTGCGAA 58.924 50.000 0.00 0.00 43.26 4.70
2778 9711 1.358725 GCGACTAATGGCAGTTGCGA 61.359 55.000 14.22 0.00 44.02 5.10
2779 9712 1.060937 GCGACTAATGGCAGTTGCG 59.939 57.895 0.00 0.70 44.02 4.85
2781 9714 1.019278 ACCGCGACTAATGGCAGTTG 61.019 55.000 8.23 0.00 33.66 3.16
2782 9715 0.321298 AACCGCGACTAATGGCAGTT 60.321 50.000 8.23 0.00 0.00 3.16
2783 9716 1.019278 CAACCGCGACTAATGGCAGT 61.019 55.000 8.23 0.00 0.00 4.40
2784 9717 1.715585 CAACCGCGACTAATGGCAG 59.284 57.895 8.23 0.00 0.00 4.85
2785 9718 2.395360 GCAACCGCGACTAATGGCA 61.395 57.895 8.23 0.00 0.00 4.92
2786 9719 2.403586 GCAACCGCGACTAATGGC 59.596 61.111 8.23 0.00 0.00 4.40
2814 9747 4.781959 TTAGTCGCGCCCGTTCGG 62.782 66.667 0.00 4.08 35.54 4.30
2815 9748 2.785105 CTTTAGTCGCGCCCGTTCG 61.785 63.158 0.00 0.00 35.54 3.95
2816 9749 2.450345 CCTTTAGTCGCGCCCGTTC 61.450 63.158 0.00 0.00 35.54 3.95
2817 9750 2.433664 CCTTTAGTCGCGCCCGTT 60.434 61.111 0.00 0.00 35.54 4.44
2840 9773 1.305930 GCAACTGCGACTAAAGGGGG 61.306 60.000 0.00 0.00 0.00 5.40
2841 9774 2.171635 GCAACTGCGACTAAAGGGG 58.828 57.895 0.00 0.00 0.00 4.79
2849 9782 4.847488 GCGGTTCTTAAGCAACTGCGAC 62.847 54.545 23.56 9.50 44.17 5.19
2850 9783 2.791381 GCGGTTCTTAAGCAACTGCGA 61.791 52.381 23.56 0.00 44.17 5.10
2851 9784 0.452784 GCGGTTCTTAAGCAACTGCG 60.453 55.000 23.56 16.52 44.17 5.18
2852 9785 3.384702 GCGGTTCTTAAGCAACTGC 57.615 52.632 23.56 23.56 46.17 4.40
2853 9786 1.136336 GTCGCGGTTCTTAAGCAACTG 60.136 52.381 6.13 16.20 33.82 3.16
2854 9787 1.145803 GTCGCGGTTCTTAAGCAACT 58.854 50.000 6.13 0.00 0.00 3.16
2855 9788 1.145803 AGTCGCGGTTCTTAAGCAAC 58.854 50.000 6.13 3.71 0.00 4.17
2856 9789 2.728690 TAGTCGCGGTTCTTAAGCAA 57.271 45.000 6.13 0.00 0.00 3.91
2857 9790 2.728690 TTAGTCGCGGTTCTTAAGCA 57.271 45.000 6.13 0.00 0.00 3.91
2858 9791 2.347755 CCTTTAGTCGCGGTTCTTAAGC 59.652 50.000 6.13 0.00 0.00 3.09
2859 9792 2.347755 GCCTTTAGTCGCGGTTCTTAAG 59.652 50.000 6.13 11.57 0.00 1.85
2860 9793 2.340337 GCCTTTAGTCGCGGTTCTTAA 58.660 47.619 6.13 2.46 0.00 1.85
2861 9794 1.404583 GGCCTTTAGTCGCGGTTCTTA 60.405 52.381 6.13 0.00 0.00 2.10
2862 9795 0.672711 GGCCTTTAGTCGCGGTTCTT 60.673 55.000 6.13 0.00 0.00 2.52
2863 9796 1.079336 GGCCTTTAGTCGCGGTTCT 60.079 57.895 6.13 5.42 0.00 3.01
2864 9797 2.104859 GGGCCTTTAGTCGCGGTTC 61.105 63.158 6.13 0.00 0.00 3.62
2865 9798 2.046604 GGGCCTTTAGTCGCGGTT 60.047 61.111 6.13 0.00 0.00 4.44
2866 9799 4.446413 CGGGCCTTTAGTCGCGGT 62.446 66.667 6.13 0.00 35.43 5.68
2867 9800 4.446413 ACGGGCCTTTAGTCGCGG 62.446 66.667 6.13 0.00 41.92 6.46
2868 9801 2.884207 GACGGGCCTTTAGTCGCG 60.884 66.667 0.84 0.00 43.02 5.87
2869 9802 2.510918 GGACGGGCCTTTAGTCGC 60.511 66.667 0.84 0.00 35.87 5.19
2870 9803 1.447314 GTGGACGGGCCTTTAGTCG 60.447 63.158 0.84 0.00 37.63 4.18
2871 9804 1.447314 CGTGGACGGGCCTTTAGTC 60.447 63.158 0.84 7.66 37.63 2.59
2872 9805 2.212110 ACGTGGACGGGCCTTTAGT 61.212 57.895 0.84 0.00 44.95 2.24
2873 9806 1.740296 CACGTGGACGGGCCTTTAG 60.740 63.158 7.95 0.00 44.95 1.85
2874 9807 2.344500 CACGTGGACGGGCCTTTA 59.656 61.111 7.95 0.00 44.95 1.85
2875 9808 4.636435 CCACGTGGACGGGCCTTT 62.636 66.667 31.31 0.00 42.34 3.11
2907 9840 3.605412 TAAAGGTCCTCCGCCCCGA 62.605 63.158 0.00 0.00 39.05 5.14
2908 9841 3.078836 TAAAGGTCCTCCGCCCCG 61.079 66.667 0.00 0.00 39.05 5.73
2909 9842 1.969200 GACTAAAGGTCCTCCGCCCC 61.969 65.000 0.00 0.00 38.93 5.80
2910 9843 1.521141 GACTAAAGGTCCTCCGCCC 59.479 63.158 0.00 0.00 38.93 6.13
2911 9844 1.141234 CGACTAAAGGTCCTCCGCC 59.859 63.158 0.00 0.00 41.64 6.13
2912 9845 1.518792 GCGACTAAAGGTCCTCCGC 60.519 63.158 0.00 0.00 41.64 5.54
2913 9846 1.226603 CGCGACTAAAGGTCCTCCG 60.227 63.158 0.00 0.00 41.64 4.63
2914 9847 1.141234 CCGCGACTAAAGGTCCTCC 59.859 63.158 8.23 0.00 41.64 4.30
2915 9848 0.245813 AACCGCGACTAAAGGTCCTC 59.754 55.000 8.23 0.00 41.64 3.71
2916 9849 0.245813 GAACCGCGACTAAAGGTCCT 59.754 55.000 8.23 0.00 41.64 3.85
2917 9850 0.245813 AGAACCGCGACTAAAGGTCC 59.754 55.000 8.23 0.00 41.64 4.46
2918 9851 1.991264 GAAGAACCGCGACTAAAGGTC 59.009 52.381 8.23 0.00 37.26 3.85
2919 9852 1.617357 AGAAGAACCGCGACTAAAGGT 59.383 47.619 8.23 0.00 40.50 3.50
2920 9853 1.993370 CAGAAGAACCGCGACTAAAGG 59.007 52.381 8.23 0.00 0.00 3.11
2921 9854 1.993370 CCAGAAGAACCGCGACTAAAG 59.007 52.381 8.23 0.00 0.00 1.85
2922 9855 1.938016 GCCAGAAGAACCGCGACTAAA 60.938 52.381 8.23 0.00 0.00 1.85
2923 9856 0.389426 GCCAGAAGAACCGCGACTAA 60.389 55.000 8.23 0.00 0.00 2.24
2924 9857 1.214589 GCCAGAAGAACCGCGACTA 59.785 57.895 8.23 0.00 0.00 2.59
2925 9858 2.048127 GCCAGAAGAACCGCGACT 60.048 61.111 8.23 0.30 0.00 4.18
2926 9859 3.119096 GGCCAGAAGAACCGCGAC 61.119 66.667 8.23 0.00 0.00 5.19
2927 9860 3.171828 TTGGCCAGAAGAACCGCGA 62.172 57.895 8.23 0.00 0.00 5.87
2928 9861 2.668212 TTGGCCAGAAGAACCGCG 60.668 61.111 5.11 0.00 0.00 6.46
2929 9862 2.626780 GGTTGGCCAGAAGAACCGC 61.627 63.158 5.11 0.00 30.33 5.68
2930 9863 3.668386 GGTTGGCCAGAAGAACCG 58.332 61.111 5.11 0.00 30.33 4.44
2931 9864 2.626780 GCGGTTGGCCAGAAGAACC 61.627 63.158 12.82 12.82 36.55 3.62
2932 9865 2.954611 GCGGTTGGCCAGAAGAAC 59.045 61.111 5.11 0.00 34.80 3.01
2933 9866 2.668212 CGCGGTTGGCCAGAAGAA 60.668 61.111 5.11 0.00 38.94 2.52
2934 9867 3.621805 TCGCGGTTGGCCAGAAGA 61.622 61.111 5.11 0.00 38.94 2.87
2935 9868 2.501223 TAGTCGCGGTTGGCCAGAAG 62.501 60.000 5.11 1.86 38.94 2.85
2936 9869 2.102109 TTAGTCGCGGTTGGCCAGAA 62.102 55.000 5.11 0.00 38.94 3.02
2937 9870 2.102109 TTTAGTCGCGGTTGGCCAGA 62.102 55.000 5.11 0.00 38.94 3.86
2938 9871 1.635663 CTTTAGTCGCGGTTGGCCAG 61.636 60.000 5.11 0.00 38.94 4.85
2939 9872 1.669760 CTTTAGTCGCGGTTGGCCA 60.670 57.895 0.00 0.00 38.94 5.36
2940 9873 2.396157 CCTTTAGTCGCGGTTGGCC 61.396 63.158 6.13 0.00 38.94 5.36
2941 9874 3.035576 GCCTTTAGTCGCGGTTGGC 62.036 63.158 6.13 8.44 38.69 4.52
2942 9875 2.396157 GGCCTTTAGTCGCGGTTGG 61.396 63.158 6.13 1.60 0.00 3.77
2943 9876 2.736682 CGGCCTTTAGTCGCGGTTG 61.737 63.158 6.13 0.00 0.00 3.77
2944 9877 2.433664 CGGCCTTTAGTCGCGGTT 60.434 61.111 6.13 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.