Multiple sequence alignment - TraesCS3B01G446500
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3B01G446500
chr3B
100.000
2966
0
0
1
2966
685911118
685908153
0.000000e+00
5478.0
1
TraesCS3B01G446500
chr3B
88.084
1519
115
27
628
2114
685875546
685874062
0.000000e+00
1742.0
2
TraesCS3B01G446500
chr3B
87.061
1538
152
21
580
2085
685942038
685940516
0.000000e+00
1694.0
3
TraesCS3B01G446500
chr3B
87.019
1533
157
19
580
2086
685980494
685978978
0.000000e+00
1690.0
4
TraesCS3B01G446500
chr3B
91.466
1160
92
4
961
2113
685763609
685762450
0.000000e+00
1587.0
5
TraesCS3B01G446500
chr3B
99.545
220
1
0
2747
2966
819794368
819794587
4.600000e-108
401.0
6
TraesCS3B01G446500
chr3B
98.667
225
3
0
2742
2966
17080777
17080553
1.660000e-107
399.0
7
TraesCS3B01G446500
chr3B
83.110
373
26
11
601
951
686044957
686044600
3.710000e-79
305.0
8
TraesCS3B01G446500
chr3B
84.581
227
16
6
601
826
686024892
686024684
1.080000e-49
207.0
9
TraesCS3B01G446500
chr3B
89.899
99
8
2
832
929
685763710
685763613
3.100000e-25
126.0
10
TraesCS3B01G446500
chr3B
90.909
77
4
2
2572
2645
823326827
823326751
1.880000e-17
100.0
11
TraesCS3B01G446500
chr3D
94.571
2542
117
18
1
2530
520679202
520676670
0.000000e+00
3910.0
12
TraesCS3B01G446500
chr3D
87.997
1508
138
16
605
2086
520703919
520702429
0.000000e+00
1742.0
13
TraesCS3B01G446500
chr3D
88.344
1407
133
12
698
2085
520684435
520683041
0.000000e+00
1661.0
14
TraesCS3B01G446500
chr3D
92.253
1123
78
6
1000
2115
520641870
520640750
0.000000e+00
1583.0
15
TraesCS3B01G446500
chr3D
83.762
1010
128
27
1113
2115
520640133
520639153
0.000000e+00
924.0
16
TraesCS3B01G446500
chr3D
84.024
338
24
14
628
939
520642203
520641870
6.220000e-77
298.0
17
TraesCS3B01G446500
chr3D
94.898
98
5
0
2648
2745
520676651
520676554
1.420000e-33
154.0
18
TraesCS3B01G446500
chr3A
93.592
2091
112
13
459
2530
655995477
655993390
0.000000e+00
3099.0
19
TraesCS3B01G446500
chr3A
88.874
1528
105
31
619
2114
658186488
658187982
0.000000e+00
1820.0
20
TraesCS3B01G446500
chr3A
88.809
1528
106
31
619
2114
655936991
655935497
0.000000e+00
1814.0
21
TraesCS3B01G446500
chr3A
88.140
371
27
8
1
366
655995834
655995476
2.730000e-115
425.0
22
TraesCS3B01G446500
chr3A
98.230
226
2
1
2741
2966
729518738
729518961
7.710000e-106
394.0
23
TraesCS3B01G446500
chr3A
88.000
150
16
2
844
992
655987405
655987257
3.040000e-40
176.0
24
TraesCS3B01G446500
chr3A
90.000
100
6
1
2648
2747
655993371
655993276
3.100000e-25
126.0
25
TraesCS3B01G446500
chr3A
90.541
74
4
3
2571
2642
653223099
653223171
8.750000e-16
95.3
26
TraesCS3B01G446500
chr7A
99.550
222
1
0
2745
2966
693441291
693441512
3.560000e-109
405.0
27
TraesCS3B01G446500
chr7A
89.873
79
5
3
2572
2647
688450248
688450170
6.770000e-17
99.0
28
TraesCS3B01G446500
chr1B
99.545
220
1
0
2747
2966
60389626
60389407
4.600000e-108
401.0
29
TraesCS3B01G446500
chr1B
97.391
230
4
2
2737
2966
48262036
48261809
9.970000e-105
390.0
30
TraesCS3B01G446500
chr1B
88.750
80
5
3
2571
2647
455164129
455164051
8.750000e-16
95.3
31
TraesCS3B01G446500
chr6B
98.230
226
3
1
2741
2966
560724691
560724915
7.710000e-106
394.0
32
TraesCS3B01G446500
chr6B
96.610
236
6
1
2733
2966
263049212
263049447
9.970000e-105
390.0
33
TraesCS3B01G446500
chr2A
94.071
253
10
5
2717
2966
6304652
6304902
2.160000e-101
379.0
34
TraesCS3B01G446500
chr7B
82.278
237
35
5
332
562
28394086
28394321
6.480000e-47
198.0
35
TraesCS3B01G446500
chr7B
91.667
72
4
2
2571
2641
369857929
369857999
6.770000e-17
99.0
36
TraesCS3B01G446500
chr1D
91.892
74
5
1
2569
2642
300834994
300834922
5.230000e-18
102.0
37
TraesCS3B01G446500
chr1D
90.411
73
5
1
2572
2642
45683384
45683312
8.750000e-16
95.3
38
TraesCS3B01G446500
chr5D
91.549
71
3
3
2572
2640
24334210
24334141
8.750000e-16
95.3
39
TraesCS3B01G446500
chr5A
88.462
78
4
4
2569
2642
554751395
554751471
4.070000e-14
89.8
40
TraesCS3B01G446500
chr2D
81.522
92
16
1
326
416
304226222
304226313
1.140000e-09
75.0
41
TraesCS3B01G446500
chr4D
92.500
40
2
1
326
365
16139334
16139372
4.130000e-04
56.5
42
TraesCS3B01G446500
chr6A
100.000
29
0
0
2147
2175
86319291
86319263
1.000000e-03
54.7
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3B01G446500
chr3B
685908153
685911118
2965
True
5478.000000
5478
100.000000
1
2966
1
chr3B.!!$R3
2965
1
TraesCS3B01G446500
chr3B
685874062
685875546
1484
True
1742.000000
1742
88.084000
628
2114
1
chr3B.!!$R2
1486
2
TraesCS3B01G446500
chr3B
685940516
685942038
1522
True
1694.000000
1694
87.061000
580
2085
1
chr3B.!!$R4
1505
3
TraesCS3B01G446500
chr3B
685978978
685980494
1516
True
1690.000000
1690
87.019000
580
2086
1
chr3B.!!$R5
1506
4
TraesCS3B01G446500
chr3B
685762450
685763710
1260
True
856.500000
1587
90.682500
832
2113
2
chr3B.!!$R9
1281
5
TraesCS3B01G446500
chr3D
520676554
520684435
7881
True
1908.333333
3910
92.604333
1
2745
3
chr3D.!!$R3
2744
6
TraesCS3B01G446500
chr3D
520702429
520703919
1490
True
1742.000000
1742
87.997000
605
2086
1
chr3D.!!$R1
1481
7
TraesCS3B01G446500
chr3D
520639153
520642203
3050
True
935.000000
1583
86.679667
628
2115
3
chr3D.!!$R2
1487
8
TraesCS3B01G446500
chr3A
658186488
658187982
1494
False
1820.000000
1820
88.874000
619
2114
1
chr3A.!!$F2
1495
9
TraesCS3B01G446500
chr3A
655935497
655936991
1494
True
1814.000000
1814
88.809000
619
2114
1
chr3A.!!$R1
1495
10
TraesCS3B01G446500
chr3A
655993276
655995834
2558
True
1216.666667
3099
90.577333
1
2747
3
chr3A.!!$R3
2746
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
117
5358
0.039256
GCTCTTTTGCAACGCATGGA
60.039
50.0
0.0
0.0
38.76
3.41
F
1302
6626
0.689080
ACCTCCCAGCGATCATGACT
60.689
55.0
0.0
0.0
0.00
3.41
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1545
6869
0.039035
ACTTCTCCTGGAGCGTCTCT
59.961
55.0
19.08
0.0
0.00
3.1
R
2602
9535
0.037512
CTCCTCGGCCTATGCATCAG
60.038
60.0
0.19
0.0
40.13
2.9
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
114
5354
2.228582
TGTATGCTCTTTTGCAACGCAT
59.771
40.909
21.01
21.01
46.61
4.73
117
5358
0.039256
GCTCTTTTGCAACGCATGGA
60.039
50.000
0.00
0.00
38.76
3.41
232
5474
2.103373
GTGTGGCTGATCTGGTCTCTA
58.897
52.381
1.46
0.00
0.00
2.43
299
5545
2.112297
ACAAACCATGGTCGCCGT
59.888
55.556
20.07
10.13
0.00
5.68
323
5569
7.375808
CGTGGAATGCAACATATACAACATAAC
59.624
37.037
0.00
0.00
0.00
1.89
679
5937
1.257743
TTCAGGACGACCTCTTCCAG
58.742
55.000
2.57
0.00
45.94
3.86
1189
6513
3.700970
TCATCCAGAACGCCCGCA
61.701
61.111
0.00
0.00
0.00
5.69
1190
6514
3.499737
CATCCAGAACGCCCGCAC
61.500
66.667
0.00
0.00
0.00
5.34
1290
6614
2.879233
GCTGGACAACGACCTCCCA
61.879
63.158
0.00
0.00
0.00
4.37
1302
6626
0.689080
ACCTCCCAGCGATCATGACT
60.689
55.000
0.00
0.00
0.00
3.41
1545
6869
0.464013
CGAGCCCCTTCGACTCTCTA
60.464
60.000
0.00
0.00
43.03
2.43
1582
6906
1.494721
AGTTCAGAAACTTGGGCCTCA
59.505
47.619
4.53
0.00
43.28
3.86
1589
6913
0.110486
AACTTGGGCCTCAACGACAT
59.890
50.000
4.53
0.00
0.00
3.06
1700
7024
0.532862
ACGCTGGTGAACCTTGACAG
60.533
55.000
0.37
0.00
36.82
3.51
1754
7078
2.594303
CAACCTCTTGCGTGGCCA
60.594
61.111
0.00
0.00
0.00
5.36
1755
7079
1.973281
CAACCTCTTGCGTGGCCAT
60.973
57.895
9.72
0.00
0.00
4.40
1847
8768
1.908483
GGTTCTCCGGAAGCCAGAT
59.092
57.895
5.23
0.00
42.22
2.90
1851
8772
0.399091
TCTCCGGAAGCCAGATGGAT
60.399
55.000
5.23
0.00
37.39
3.41
1875
8796
1.024579
TCAAGAATTTCGCGGCCTCC
61.025
55.000
6.13
0.00
0.00
4.30
1898
8819
5.046014
CCATGGTCAAAATGGGGAACATAAA
60.046
40.000
2.57
0.00
39.34
1.40
2139
9062
3.252458
AGTGTTACAAGAAAACGGGATGC
59.748
43.478
0.00
0.00
0.00
3.91
2173
9096
1.066002
ACCGAACACTCTTCGACGAAA
59.934
47.619
12.03
2.42
43.97
3.46
2178
9101
4.027621
CGAACACTCTTCGACGAAATATGG
60.028
45.833
12.03
0.00
43.97
2.74
2224
9147
8.352201
TGGACTTGATACAGAACTCAATTTTTG
58.648
33.333
0.00
0.00
31.39
2.44
2234
9157
9.603921
ACAGAACTCAATTTTTGACATCATTTT
57.396
25.926
0.00
0.00
35.46
1.82
2369
9295
6.904626
AGACTTTCCATGGAATTGCTAGTAT
58.095
36.000
27.53
20.28
33.79
2.12
2372
9298
6.543831
ACTTTCCATGGAATTGCTAGTATGTC
59.456
38.462
27.53
0.00
33.79
3.06
2416
9342
6.401153
GCTTGTTGAAGACTTTCCGTGTATAG
60.401
42.308
0.00
0.00
32.09
1.31
2417
9343
4.927425
TGTTGAAGACTTTCCGTGTATAGC
59.073
41.667
0.00
0.00
32.09
2.97
2508
9440
1.888512
GATGTGGACAGGTTGCATGTT
59.111
47.619
0.00
0.00
0.00
2.71
2511
9443
3.291584
TGTGGACAGGTTGCATGTTAAA
58.708
40.909
0.00
0.00
0.00
1.52
2540
9473
9.735362
AATCATATATTAGGAGGCCTCTATTGA
57.265
33.333
31.36
22.19
34.61
2.57
2541
9474
9.735362
ATCATATATTAGGAGGCCTCTATTGAA
57.265
33.333
31.36
17.78
34.61
2.69
2542
9475
9.560860
TCATATATTAGGAGGCCTCTATTGAAA
57.439
33.333
31.36
16.30
34.61
2.69
2599
9532
4.990543
ATAAATGTGGTCGTATGCATCG
57.009
40.909
0.19
7.36
0.00
3.84
2600
9533
2.309528
AATGTGGTCGTATGCATCGT
57.690
45.000
0.19
0.00
0.00
3.73
2601
9534
2.309528
ATGTGGTCGTATGCATCGTT
57.690
45.000
0.19
0.00
0.00
3.85
2602
9535
1.635844
TGTGGTCGTATGCATCGTTC
58.364
50.000
0.19
5.44
0.00
3.95
2603
9536
1.203758
TGTGGTCGTATGCATCGTTCT
59.796
47.619
0.19
0.00
0.00
3.01
2604
9537
1.588404
GTGGTCGTATGCATCGTTCTG
59.412
52.381
0.19
0.00
0.00
3.02
2605
9538
1.474879
TGGTCGTATGCATCGTTCTGA
59.525
47.619
0.19
0.00
0.00
3.27
2606
9539
2.100749
TGGTCGTATGCATCGTTCTGAT
59.899
45.455
0.19
0.00
38.01
2.90
2615
9548
2.175878
ATCGTTCTGATGCATAGGCC
57.824
50.000
0.00
0.00
40.13
5.19
2616
9549
0.249447
TCGTTCTGATGCATAGGCCG
60.249
55.000
0.00
0.00
40.13
6.13
2617
9550
0.249447
CGTTCTGATGCATAGGCCGA
60.249
55.000
0.00
0.00
40.13
5.54
2618
9551
1.506493
GTTCTGATGCATAGGCCGAG
58.494
55.000
0.00
0.00
40.13
4.63
2619
9552
0.394192
TTCTGATGCATAGGCCGAGG
59.606
55.000
0.00
0.00
40.13
4.63
2620
9553
0.469892
TCTGATGCATAGGCCGAGGA
60.470
55.000
0.20
0.00
40.13
3.71
2621
9554
0.037512
CTGATGCATAGGCCGAGGAG
60.038
60.000
0.20
0.00
40.13
3.69
2622
9555
0.760567
TGATGCATAGGCCGAGGAGT
60.761
55.000
0.20
0.00
40.13
3.85
2623
9556
0.037790
GATGCATAGGCCGAGGAGTC
60.038
60.000
0.20
0.00
40.13
3.36
2624
9557
1.476007
ATGCATAGGCCGAGGAGTCC
61.476
60.000
0.20
0.00
40.13
3.85
2625
9558
2.873525
GCATAGGCCGAGGAGTCCC
61.874
68.421
5.25
0.00
0.00
4.46
2626
9559
2.201771
ATAGGCCGAGGAGTCCCC
59.798
66.667
5.25
0.00
0.00
4.81
2638
9571
4.536295
AGGAGTCCCCTTTCAAAAAGAA
57.464
40.909
5.25
0.00
44.85
2.52
2639
9572
4.878968
AGGAGTCCCCTTTCAAAAAGAAA
58.121
39.130
5.25
0.00
44.85
2.52
2640
9573
5.277250
AGGAGTCCCCTTTCAAAAAGAAAA
58.723
37.500
5.25
0.00
44.85
2.29
2641
9574
5.724370
AGGAGTCCCCTTTCAAAAAGAAAAA
59.276
36.000
5.25
0.00
44.85
1.94
2685
9618
2.285368
TCTCGGCCCATTCCTGGT
60.285
61.111
0.00
0.00
41.37
4.00
2753
9686
8.990163
TTAAGGAAAATTAAACTCTCACTGGT
57.010
30.769
0.00
0.00
0.00
4.00
2754
9687
6.884280
AGGAAAATTAAACTCTCACTGGTG
57.116
37.500
0.00
0.00
0.00
4.17
2755
9688
5.770162
AGGAAAATTAAACTCTCACTGGTGG
59.230
40.000
0.70
0.00
0.00
4.61
2756
9689
5.768164
GGAAAATTAAACTCTCACTGGTGGA
59.232
40.000
0.70
0.00
0.00
4.02
2757
9690
6.264518
GGAAAATTAAACTCTCACTGGTGGAA
59.735
38.462
0.70
0.00
0.00
3.53
2758
9691
7.201875
GGAAAATTAAACTCTCACTGGTGGAAA
60.202
37.037
0.70
0.00
0.00
3.13
2759
9692
7.654022
AAATTAAACTCTCACTGGTGGAAAA
57.346
32.000
0.70
0.00
0.00
2.29
2760
9693
7.654022
AATTAAACTCTCACTGGTGGAAAAA
57.346
32.000
0.70
0.00
0.00
1.94
2761
9694
6.693315
TTAAACTCTCACTGGTGGAAAAAG
57.307
37.500
0.70
0.00
0.00
2.27
2762
9695
3.214696
ACTCTCACTGGTGGAAAAAGG
57.785
47.619
0.70
0.00
0.00
3.11
2763
9696
2.158608
ACTCTCACTGGTGGAAAAAGGG
60.159
50.000
0.70
0.00
0.00
3.95
2764
9697
0.961753
CTCACTGGTGGAAAAAGGGC
59.038
55.000
0.70
0.00
0.00
5.19
2765
9698
0.469144
TCACTGGTGGAAAAAGGGCC
60.469
55.000
0.00
0.00
0.00
5.80
2766
9699
0.469892
CACTGGTGGAAAAAGGGCCT
60.470
55.000
0.00
0.00
0.00
5.19
2767
9700
0.264657
ACTGGTGGAAAAAGGGCCTT
59.735
50.000
14.48
14.48
0.00
4.35
2768
9701
1.343985
ACTGGTGGAAAAAGGGCCTTT
60.344
47.619
25.68
25.68
34.94
3.11
2769
9702
1.070601
CTGGTGGAAAAAGGGCCTTTG
59.929
52.381
31.06
12.80
33.64
2.77
2770
9703
0.396435
GGTGGAAAAAGGGCCTTTGG
59.604
55.000
31.06
0.00
33.64
3.28
2771
9704
1.128200
GTGGAAAAAGGGCCTTTGGT
58.872
50.000
31.06
21.81
33.64
3.67
2772
9705
1.070134
GTGGAAAAAGGGCCTTTGGTC
59.930
52.381
31.06
27.31
33.64
4.02
2773
9706
0.317160
GGAAAAAGGGCCTTTGGTCG
59.683
55.000
31.06
0.00
33.64
4.79
2774
9707
0.319555
GAAAAAGGGCCTTTGGTCGC
60.320
55.000
31.06
14.98
33.64
5.19
2775
9708
2.082629
AAAAAGGGCCTTTGGTCGCG
62.083
55.000
31.06
0.00
33.64
5.87
2779
9712
3.733960
GGCCTTTGGTCGCGGTTC
61.734
66.667
6.13
0.00
0.00
3.62
2780
9713
4.084888
GCCTTTGGTCGCGGTTCG
62.085
66.667
6.13
0.00
40.15
3.95
2791
9724
2.953821
CGGTTCGCAACTGCCATT
59.046
55.556
0.00
0.00
37.91
3.16
2792
9725
2.167161
CGGTTCGCAACTGCCATTA
58.833
52.632
0.00
0.00
37.91
1.90
2793
9726
0.096976
CGGTTCGCAACTGCCATTAG
59.903
55.000
0.00
0.00
37.91
1.73
2794
9727
1.165270
GGTTCGCAACTGCCATTAGT
58.835
50.000
0.00
0.00
37.91
2.24
2795
9728
1.130561
GGTTCGCAACTGCCATTAGTC
59.869
52.381
0.00
0.00
37.91
2.59
2796
9729
1.075542
TTCGCAACTGCCATTAGTCG
58.924
50.000
0.00
0.00
37.91
4.18
2797
9730
1.060937
CGCAACTGCCATTAGTCGC
59.939
57.895
0.00
0.00
37.91
5.19
2798
9731
1.060937
GCAACTGCCATTAGTCGCG
59.939
57.895
0.00
0.00
34.31
5.87
2799
9732
1.715585
CAACTGCCATTAGTCGCGG
59.284
57.895
6.13
0.00
37.39
6.46
2800
9733
1.019278
CAACTGCCATTAGTCGCGGT
61.019
55.000
6.13
0.00
46.47
5.68
2801
9734
1.295423
ACTGCCATTAGTCGCGGTT
59.705
52.632
6.13
0.00
41.86
4.44
2802
9735
1.019278
ACTGCCATTAGTCGCGGTTG
61.019
55.000
6.13
0.00
41.86
3.77
2803
9736
2.309764
CTGCCATTAGTCGCGGTTGC
62.310
60.000
6.13
0.28
37.91
4.17
2831
9764
4.781959
CCGAACGGGCGCGACTAA
62.782
66.667
30.98
0.00
0.00
2.24
2832
9765
2.806198
CGAACGGGCGCGACTAAA
60.806
61.111
30.98
0.00
0.00
1.85
2833
9766
2.785105
CGAACGGGCGCGACTAAAG
61.785
63.158
30.98
10.35
0.00
1.85
2834
9767
2.433664
AACGGGCGCGACTAAAGG
60.434
61.111
30.98
0.00
0.00
3.11
2858
9791
2.854522
CCCCCTTTAGTCGCAGTTG
58.145
57.895
0.00
0.00
0.00
3.16
2859
9792
1.305930
CCCCCTTTAGTCGCAGTTGC
61.306
60.000
0.00
0.00
37.78
4.17
2860
9793
0.321653
CCCCTTTAGTCGCAGTTGCT
60.322
55.000
2.29
0.00
39.32
3.91
2861
9794
1.523758
CCCTTTAGTCGCAGTTGCTT
58.476
50.000
2.29
0.00
39.32
3.91
2862
9795
2.614481
CCCCTTTAGTCGCAGTTGCTTA
60.614
50.000
2.29
0.00
39.32
3.09
2863
9796
3.071479
CCCTTTAGTCGCAGTTGCTTAA
58.929
45.455
2.29
0.00
39.32
1.85
2864
9797
3.125316
CCCTTTAGTCGCAGTTGCTTAAG
59.875
47.826
0.00
0.00
39.32
1.85
2865
9798
3.994392
CCTTTAGTCGCAGTTGCTTAAGA
59.006
43.478
6.67
0.00
39.32
2.10
2866
9799
4.451096
CCTTTAGTCGCAGTTGCTTAAGAA
59.549
41.667
6.67
0.00
39.32
2.52
2867
9800
4.985044
TTAGTCGCAGTTGCTTAAGAAC
57.015
40.909
6.67
8.02
39.32
3.01
2868
9801
2.143925
AGTCGCAGTTGCTTAAGAACC
58.856
47.619
6.67
0.00
39.32
3.62
2869
9802
1.136336
GTCGCAGTTGCTTAAGAACCG
60.136
52.381
6.67
8.00
39.32
4.44
2870
9803
0.452784
CGCAGTTGCTTAAGAACCGC
60.453
55.000
6.67
10.47
39.32
5.68
2871
9804
0.452784
GCAGTTGCTTAAGAACCGCG
60.453
55.000
6.67
0.00
38.21
6.46
2872
9805
1.144969
CAGTTGCTTAAGAACCGCGA
58.855
50.000
8.23
0.00
0.00
5.87
2873
9806
1.136336
CAGTTGCTTAAGAACCGCGAC
60.136
52.381
8.23
1.13
38.13
5.19
2874
9807
1.145803
GTTGCTTAAGAACCGCGACT
58.854
50.000
8.23
0.30
35.64
4.18
2875
9808
2.029649
AGTTGCTTAAGAACCGCGACTA
60.030
45.455
8.23
0.00
44.33
2.59
2876
9809
2.728690
TGCTTAAGAACCGCGACTAA
57.271
45.000
8.23
0.00
0.00
2.24
2877
9810
3.029320
TGCTTAAGAACCGCGACTAAA
57.971
42.857
8.23
0.00
0.00
1.85
2878
9811
2.991190
TGCTTAAGAACCGCGACTAAAG
59.009
45.455
8.23
4.60
0.00
1.85
2879
9812
2.347755
GCTTAAGAACCGCGACTAAAGG
59.652
50.000
8.23
0.00
0.00
3.11
2880
9813
2.000429
TAAGAACCGCGACTAAAGGC
58.000
50.000
8.23
0.00
0.00
4.35
2881
9814
0.672711
AAGAACCGCGACTAAAGGCC
60.673
55.000
8.23
0.00
0.00
5.19
2882
9815
2.046604
AACCGCGACTAAAGGCCC
60.047
61.111
8.23
0.00
0.00
5.80
2883
9816
3.945304
AACCGCGACTAAAGGCCCG
62.945
63.158
8.23
0.00
0.00
6.13
2884
9817
4.446413
CCGCGACTAAAGGCCCGT
62.446
66.667
8.23
0.00
0.00
5.28
2885
9818
2.884207
CGCGACTAAAGGCCCGTC
60.884
66.667
0.00
0.02
0.00
4.79
2886
9819
2.510918
GCGACTAAAGGCCCGTCC
60.511
66.667
0.00
0.00
0.00
4.79
2887
9820
2.975536
CGACTAAAGGCCCGTCCA
59.024
61.111
0.00
0.00
37.29
4.02
2888
9821
1.447314
CGACTAAAGGCCCGTCCAC
60.447
63.158
0.00
0.00
37.29
4.02
2889
9822
1.447314
GACTAAAGGCCCGTCCACG
60.447
63.158
0.00
0.00
37.29
4.94
2890
9823
2.163601
GACTAAAGGCCCGTCCACGT
62.164
60.000
0.00
0.00
37.29
4.49
2891
9824
1.740296
CTAAAGGCCCGTCCACGTG
60.740
63.158
9.08
9.08
37.29
4.49
2892
9825
3.242897
TAAAGGCCCGTCCACGTGG
62.243
63.158
29.26
29.26
37.29
4.94
2925
9858
3.078836
CGGGGCGGAGGACCTTTA
61.079
66.667
0.00
0.00
43.03
1.85
2926
9859
2.908796
GGGGCGGAGGACCTTTAG
59.091
66.667
0.00
0.00
43.03
1.85
2927
9860
1.993948
GGGGCGGAGGACCTTTAGT
60.994
63.158
0.00
0.00
43.03
2.24
2928
9861
1.521141
GGGCGGAGGACCTTTAGTC
59.479
63.158
0.00
0.00
45.51
2.59
2936
9869
3.808583
GACCTTTAGTCGCGGTTCT
57.191
52.632
6.13
5.42
35.30
3.01
2937
9870
2.075979
GACCTTTAGTCGCGGTTCTT
57.924
50.000
6.13
0.00
35.30
2.52
2938
9871
1.991264
GACCTTTAGTCGCGGTTCTTC
59.009
52.381
6.13
0.00
35.30
2.87
2939
9872
1.617357
ACCTTTAGTCGCGGTTCTTCT
59.383
47.619
6.13
0.00
0.00
2.85
2940
9873
1.993370
CCTTTAGTCGCGGTTCTTCTG
59.007
52.381
6.13
0.00
0.00
3.02
2941
9874
1.993370
CTTTAGTCGCGGTTCTTCTGG
59.007
52.381
6.13
0.00
0.00
3.86
2942
9875
0.389426
TTAGTCGCGGTTCTTCTGGC
60.389
55.000
6.13
0.00
0.00
4.85
2943
9876
2.221906
TAGTCGCGGTTCTTCTGGCC
62.222
60.000
6.13
0.00
0.00
5.36
2944
9877
3.621805
TCGCGGTTCTTCTGGCCA
61.622
61.111
4.71
4.71
0.00
5.36
2945
9878
2.668212
CGCGGTTCTTCTGGCCAA
60.668
61.111
7.01
0.00
0.00
4.52
2946
9879
2.954611
GCGGTTCTTCTGGCCAAC
59.045
61.111
7.01
0.29
0.00
3.77
2947
9880
2.626780
GCGGTTCTTCTGGCCAACC
61.627
63.158
12.82
12.82
36.91
3.77
2948
9881
3.668386
GGTTCTTCTGGCCAACCG
58.332
61.111
7.01
0.00
39.70
4.44
2949
9882
2.626780
GGTTCTTCTGGCCAACCGC
61.627
63.158
7.01
0.00
39.70
5.68
2950
9883
2.668212
TTCTTCTGGCCAACCGCG
60.668
61.111
7.01
0.00
39.70
6.46
2951
9884
3.171828
TTCTTCTGGCCAACCGCGA
62.172
57.895
8.23
0.00
39.70
5.87
2952
9885
3.423154
CTTCTGGCCAACCGCGAC
61.423
66.667
8.23
0.00
39.70
5.19
2953
9886
3.883744
CTTCTGGCCAACCGCGACT
62.884
63.158
8.23
0.00
39.70
4.18
2954
9887
2.501223
CTTCTGGCCAACCGCGACTA
62.501
60.000
8.23
0.00
39.70
2.59
2955
9888
2.047655
CTGGCCAACCGCGACTAA
60.048
61.111
8.23
0.00
39.70
2.24
2956
9889
1.669760
CTGGCCAACCGCGACTAAA
60.670
57.895
8.23
0.00
39.70
1.85
2957
9890
1.635663
CTGGCCAACCGCGACTAAAG
61.636
60.000
8.23
0.00
39.70
1.85
2958
9891
2.396157
GGCCAACCGCGACTAAAGG
61.396
63.158
8.23
1.23
38.94
3.11
2959
9892
3.035576
GCCAACCGCGACTAAAGGC
62.036
63.158
8.23
8.51
0.00
4.35
2960
9893
2.396157
CCAACCGCGACTAAAGGCC
61.396
63.158
8.23
0.00
0.00
5.19
2961
9894
2.433664
AACCGCGACTAAAGGCCG
60.434
61.111
8.23
0.00
0.00
6.13
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
31
5265
8.844865
ATATGCCTATAGTATCCTCATGTTGA
57.155
34.615
0.00
0.00
0.00
3.18
91
5325
3.438434
TGCGTTGCAAAAGAGCATACATA
59.562
39.130
0.00
0.00
45.19
2.29
114
5354
6.442541
TTCTTCTAGTGGGTTAATTGTCCA
57.557
37.500
0.00
0.00
0.00
4.02
117
5358
7.295340
ACCTTTTCTTCTAGTGGGTTAATTGT
58.705
34.615
0.00
0.00
0.00
2.71
177
5419
9.396022
CCTTAGCTTACATTTCTTCCATCTTTA
57.604
33.333
0.00
0.00
0.00
1.85
299
5545
8.286191
TGTTATGTTGTATATGTTGCATTCCA
57.714
30.769
0.00
0.00
0.00
3.53
545
5796
1.404986
CCCGCGTTCCTAAATGTGAGA
60.405
52.381
4.92
0.00
34.45
3.27
659
5916
1.827969
CTGGAAGAGGTCGTCCTGAAT
59.172
52.381
5.76
0.00
45.24
2.57
660
5917
1.257743
CTGGAAGAGGTCGTCCTGAA
58.742
55.000
5.76
0.00
45.24
3.02
679
5937
2.223021
TGAATGATTAGCGCGAACAAGC
60.223
45.455
12.10
2.81
0.00
4.01
842
6151
9.351570
GAACGGTTTGTAAGCTATATATAGTCC
57.648
37.037
18.81
5.64
32.96
3.85
1201
6525
4.119363
GAGGCTGGCTGGGATGCA
62.119
66.667
9.06
0.00
34.04
3.96
1290
6614
2.361757
CTCCTTCTCAGTCATGATCGCT
59.638
50.000
0.00
0.00
34.12
4.93
1302
6626
1.613630
GGCAGGGACCTCCTTCTCA
60.614
63.158
0.00
0.00
45.47
3.27
1545
6869
0.039035
ACTTCTCCTGGAGCGTCTCT
59.961
55.000
19.08
0.00
0.00
3.10
1589
6913
1.701031
TTGGAGGGCGACAAGGTCAA
61.701
55.000
0.00
0.00
32.09
3.18
1700
7024
0.680061
AAAGACGTCAGGGGTGACTC
59.320
55.000
19.50
1.66
36.71
3.36
1809
8730
4.892379
CGAACGATCGGCGCGGTA
62.892
66.667
20.98
2.33
45.32
4.02
1847
8768
4.379394
CCGCGAAATTCTTGAAGAAATCCA
60.379
41.667
12.10
0.00
37.82
3.41
1851
8772
2.351350
GGCCGCGAAATTCTTGAAGAAA
60.351
45.455
12.10
0.00
37.82
2.52
1875
8796
5.674052
TTATGTTCCCCATTTTGACCATG
57.326
39.130
0.00
0.00
34.86
3.66
1916
8837
3.372025
GCAGTTGTTCCTAATCTCCCCAT
60.372
47.826
0.00
0.00
0.00
4.00
2110
9033
7.499895
TCCCGTTTTCTTGTAACACTCTAAAAT
59.500
33.333
0.00
0.00
0.00
1.82
2115
9038
4.411256
TCCCGTTTTCTTGTAACACTCT
57.589
40.909
0.00
0.00
0.00
3.24
2139
9062
3.963724
GTGTTCGGTTTGTACATGAAACG
59.036
43.478
10.76
10.76
34.67
3.60
2173
9096
6.725834
ACACTTTCTGTTTGAAATCCCCATAT
59.274
34.615
0.00
0.00
42.96
1.78
2178
9101
4.340950
TCCACACTTTCTGTTTGAAATCCC
59.659
41.667
0.00
0.00
42.96
3.85
2369
9295
7.333528
AGCAACACTTTTGATTTAGAAGACA
57.666
32.000
0.00
0.00
0.00
3.41
2372
9298
7.992180
ACAAGCAACACTTTTGATTTAGAAG
57.008
32.000
0.00
0.00
36.04
2.85
2386
9312
4.105486
GGAAAGTCTTCAACAAGCAACAC
58.895
43.478
0.00
0.00
32.75
3.32
2416
9342
3.119065
ACGAGGGACTTTTAGCTTCTAGC
60.119
47.826
0.00
0.00
41.55
3.42
2417
9343
4.722361
ACGAGGGACTTTTAGCTTCTAG
57.278
45.455
0.00
0.00
41.55
2.43
2476
9403
4.643334
CCTGTCCACATCATCAATCAACAT
59.357
41.667
0.00
0.00
0.00
2.71
2477
9404
4.011698
CCTGTCCACATCATCAATCAACA
58.988
43.478
0.00
0.00
0.00
3.33
2478
9405
4.012374
ACCTGTCCACATCATCAATCAAC
58.988
43.478
0.00
0.00
0.00
3.18
2573
9506
8.652463
CGATGCATACGACCACATTTATAAATA
58.348
33.333
10.34
0.00
0.00
1.40
2574
9507
7.172532
ACGATGCATACGACCACATTTATAAAT
59.827
33.333
20.36
4.81
34.70
1.40
2575
9508
6.480651
ACGATGCATACGACCACATTTATAAA
59.519
34.615
20.36
0.00
34.70
1.40
2577
9510
5.534407
ACGATGCATACGACCACATTTATA
58.466
37.500
20.36
0.00
34.70
0.98
2578
9511
4.377021
ACGATGCATACGACCACATTTAT
58.623
39.130
20.36
0.00
34.70
1.40
2579
9512
3.787785
ACGATGCATACGACCACATTTA
58.212
40.909
20.36
0.00
34.70
1.40
2580
9513
2.627945
ACGATGCATACGACCACATTT
58.372
42.857
20.36
0.00
34.70
2.32
2581
9514
2.309528
ACGATGCATACGACCACATT
57.690
45.000
20.36
0.00
34.70
2.71
2582
9515
2.159099
AGAACGATGCATACGACCACAT
60.159
45.455
20.36
0.00
34.70
3.21
2583
9516
1.203758
AGAACGATGCATACGACCACA
59.796
47.619
20.36
0.00
34.70
4.17
2584
9517
1.588404
CAGAACGATGCATACGACCAC
59.412
52.381
20.36
10.77
34.70
4.16
2585
9518
1.474879
TCAGAACGATGCATACGACCA
59.525
47.619
20.36
5.97
34.70
4.02
2586
9519
2.203800
TCAGAACGATGCATACGACC
57.796
50.000
20.36
12.84
34.70
4.79
2587
9520
3.760264
CATCAGAACGATGCATACGAC
57.240
47.619
20.36
14.47
44.95
4.34
2596
9529
1.606480
CGGCCTATGCATCAGAACGAT
60.606
52.381
0.19
0.00
40.13
3.73
2597
9530
0.249447
CGGCCTATGCATCAGAACGA
60.249
55.000
0.19
0.00
40.13
3.85
2598
9531
0.249447
TCGGCCTATGCATCAGAACG
60.249
55.000
0.19
3.31
40.13
3.95
2599
9532
1.506493
CTCGGCCTATGCATCAGAAC
58.494
55.000
0.19
0.00
40.13
3.01
2600
9533
0.394192
CCTCGGCCTATGCATCAGAA
59.606
55.000
0.19
0.00
40.13
3.02
2601
9534
0.469892
TCCTCGGCCTATGCATCAGA
60.470
55.000
0.19
0.00
40.13
3.27
2602
9535
0.037512
CTCCTCGGCCTATGCATCAG
60.038
60.000
0.19
0.00
40.13
2.90
2603
9536
0.760567
ACTCCTCGGCCTATGCATCA
60.761
55.000
0.19
0.00
40.13
3.07
2604
9537
0.037790
GACTCCTCGGCCTATGCATC
60.038
60.000
0.19
0.00
40.13
3.91
2605
9538
1.476007
GGACTCCTCGGCCTATGCAT
61.476
60.000
3.79
3.79
40.13
3.96
2606
9539
2.134287
GGACTCCTCGGCCTATGCA
61.134
63.158
0.00
0.00
40.13
3.96
2607
9540
2.737830
GGACTCCTCGGCCTATGC
59.262
66.667
0.00
0.00
0.00
3.14
2608
9541
2.210711
GGGGACTCCTCGGCCTATG
61.211
68.421
0.00
0.00
0.00
2.23
2609
9542
2.201771
GGGGACTCCTCGGCCTAT
59.798
66.667
0.00
0.00
0.00
2.57
2610
9543
3.028098
AGGGGACTCCTCGGCCTA
61.028
66.667
0.00
0.00
44.06
3.93
2618
9551
5.607939
TTTTCTTTTTGAAAGGGGACTCC
57.392
39.130
1.04
0.00
44.40
3.85
2642
9575
1.135915
TCAGCCGCATTGTGTGTTTTT
59.864
42.857
0.00
0.00
0.00
1.94
2643
9576
0.743688
TCAGCCGCATTGTGTGTTTT
59.256
45.000
0.00
0.00
0.00
2.43
2644
9577
0.961019
ATCAGCCGCATTGTGTGTTT
59.039
45.000
0.00
0.00
0.00
2.83
2645
9578
0.523072
GATCAGCCGCATTGTGTGTT
59.477
50.000
0.00
0.00
0.00
3.32
2646
9579
1.308069
GGATCAGCCGCATTGTGTGT
61.308
55.000
0.00
0.00
0.00
3.72
2647
9580
1.430632
GGATCAGCCGCATTGTGTG
59.569
57.895
0.00
0.00
0.00
3.82
2648
9581
3.909662
GGATCAGCCGCATTGTGT
58.090
55.556
0.00
0.00
0.00
3.72
2672
9605
0.395724
CCACTTACCAGGAATGGGCC
60.396
60.000
0.00
0.00
0.00
5.80
2685
9618
4.141287
ACTTTGCATGTAGTTGCCACTTA
58.859
39.130
0.00
0.00
42.06
2.24
2747
9680
0.469892
AGGCCCTTTTTCCACCAGTG
60.470
55.000
0.00
0.00
0.00
3.66
2748
9681
0.264657
AAGGCCCTTTTTCCACCAGT
59.735
50.000
0.00
0.00
0.00
4.00
2749
9682
1.070601
CAAAGGCCCTTTTTCCACCAG
59.929
52.381
5.84
0.00
30.60
4.00
2750
9683
1.127343
CAAAGGCCCTTTTTCCACCA
58.873
50.000
5.84
0.00
30.60
4.17
2751
9684
0.396435
CCAAAGGCCCTTTTTCCACC
59.604
55.000
5.84
0.00
30.60
4.61
2752
9685
1.070134
GACCAAAGGCCCTTTTTCCAC
59.930
52.381
5.84
0.00
30.60
4.02
2753
9686
1.419381
GACCAAAGGCCCTTTTTCCA
58.581
50.000
5.84
0.00
30.60
3.53
2754
9687
0.317160
CGACCAAAGGCCCTTTTTCC
59.683
55.000
5.84
0.00
30.60
3.13
2755
9688
0.319555
GCGACCAAAGGCCCTTTTTC
60.320
55.000
5.84
5.31
30.60
2.29
2756
9689
1.745890
GCGACCAAAGGCCCTTTTT
59.254
52.632
5.84
0.00
30.60
1.94
2757
9690
2.561037
CGCGACCAAAGGCCCTTTT
61.561
57.895
5.84
0.00
30.60
2.27
2758
9691
2.983592
CGCGACCAAAGGCCCTTT
60.984
61.111
1.93
1.93
33.58
3.11
2762
9695
3.733960
GAACCGCGACCAAAGGCC
61.734
66.667
8.23
0.00
0.00
5.19
2763
9696
4.084888
CGAACCGCGACCAAAGGC
62.085
66.667
8.23
0.00
44.57
4.35
2764
9697
4.084888
GCGAACCGCGACCAAAGG
62.085
66.667
8.23
0.00
44.55
3.11
2774
9707
0.096976
CTAATGGCAGTTGCGAACCG
59.903
55.000
0.00
0.00
43.26
4.44
2775
9708
1.130561
GACTAATGGCAGTTGCGAACC
59.869
52.381
0.00
0.00
43.26
3.62
2776
9709
1.201921
CGACTAATGGCAGTTGCGAAC
60.202
52.381
0.00
0.00
43.26
3.95
2777
9710
1.075542
CGACTAATGGCAGTTGCGAA
58.924
50.000
0.00
0.00
43.26
4.70
2778
9711
1.358725
GCGACTAATGGCAGTTGCGA
61.359
55.000
14.22
0.00
44.02
5.10
2779
9712
1.060937
GCGACTAATGGCAGTTGCG
59.939
57.895
0.00
0.70
44.02
4.85
2781
9714
1.019278
ACCGCGACTAATGGCAGTTG
61.019
55.000
8.23
0.00
33.66
3.16
2782
9715
0.321298
AACCGCGACTAATGGCAGTT
60.321
50.000
8.23
0.00
0.00
3.16
2783
9716
1.019278
CAACCGCGACTAATGGCAGT
61.019
55.000
8.23
0.00
0.00
4.40
2784
9717
1.715585
CAACCGCGACTAATGGCAG
59.284
57.895
8.23
0.00
0.00
4.85
2785
9718
2.395360
GCAACCGCGACTAATGGCA
61.395
57.895
8.23
0.00
0.00
4.92
2786
9719
2.403586
GCAACCGCGACTAATGGC
59.596
61.111
8.23
0.00
0.00
4.40
2814
9747
4.781959
TTAGTCGCGCCCGTTCGG
62.782
66.667
0.00
4.08
35.54
4.30
2815
9748
2.785105
CTTTAGTCGCGCCCGTTCG
61.785
63.158
0.00
0.00
35.54
3.95
2816
9749
2.450345
CCTTTAGTCGCGCCCGTTC
61.450
63.158
0.00
0.00
35.54
3.95
2817
9750
2.433664
CCTTTAGTCGCGCCCGTT
60.434
61.111
0.00
0.00
35.54
4.44
2840
9773
1.305930
GCAACTGCGACTAAAGGGGG
61.306
60.000
0.00
0.00
0.00
5.40
2841
9774
2.171635
GCAACTGCGACTAAAGGGG
58.828
57.895
0.00
0.00
0.00
4.79
2849
9782
4.847488
GCGGTTCTTAAGCAACTGCGAC
62.847
54.545
23.56
9.50
44.17
5.19
2850
9783
2.791381
GCGGTTCTTAAGCAACTGCGA
61.791
52.381
23.56
0.00
44.17
5.10
2851
9784
0.452784
GCGGTTCTTAAGCAACTGCG
60.453
55.000
23.56
16.52
44.17
5.18
2852
9785
3.384702
GCGGTTCTTAAGCAACTGC
57.615
52.632
23.56
23.56
46.17
4.40
2853
9786
1.136336
GTCGCGGTTCTTAAGCAACTG
60.136
52.381
6.13
16.20
33.82
3.16
2854
9787
1.145803
GTCGCGGTTCTTAAGCAACT
58.854
50.000
6.13
0.00
0.00
3.16
2855
9788
1.145803
AGTCGCGGTTCTTAAGCAAC
58.854
50.000
6.13
3.71
0.00
4.17
2856
9789
2.728690
TAGTCGCGGTTCTTAAGCAA
57.271
45.000
6.13
0.00
0.00
3.91
2857
9790
2.728690
TTAGTCGCGGTTCTTAAGCA
57.271
45.000
6.13
0.00
0.00
3.91
2858
9791
2.347755
CCTTTAGTCGCGGTTCTTAAGC
59.652
50.000
6.13
0.00
0.00
3.09
2859
9792
2.347755
GCCTTTAGTCGCGGTTCTTAAG
59.652
50.000
6.13
11.57
0.00
1.85
2860
9793
2.340337
GCCTTTAGTCGCGGTTCTTAA
58.660
47.619
6.13
2.46
0.00
1.85
2861
9794
1.404583
GGCCTTTAGTCGCGGTTCTTA
60.405
52.381
6.13
0.00
0.00
2.10
2862
9795
0.672711
GGCCTTTAGTCGCGGTTCTT
60.673
55.000
6.13
0.00
0.00
2.52
2863
9796
1.079336
GGCCTTTAGTCGCGGTTCT
60.079
57.895
6.13
5.42
0.00
3.01
2864
9797
2.104859
GGGCCTTTAGTCGCGGTTC
61.105
63.158
6.13
0.00
0.00
3.62
2865
9798
2.046604
GGGCCTTTAGTCGCGGTT
60.047
61.111
6.13
0.00
0.00
4.44
2866
9799
4.446413
CGGGCCTTTAGTCGCGGT
62.446
66.667
6.13
0.00
35.43
5.68
2867
9800
4.446413
ACGGGCCTTTAGTCGCGG
62.446
66.667
6.13
0.00
41.92
6.46
2868
9801
2.884207
GACGGGCCTTTAGTCGCG
60.884
66.667
0.84
0.00
43.02
5.87
2869
9802
2.510918
GGACGGGCCTTTAGTCGC
60.511
66.667
0.84
0.00
35.87
5.19
2870
9803
1.447314
GTGGACGGGCCTTTAGTCG
60.447
63.158
0.84
0.00
37.63
4.18
2871
9804
1.447314
CGTGGACGGGCCTTTAGTC
60.447
63.158
0.84
7.66
37.63
2.59
2872
9805
2.212110
ACGTGGACGGGCCTTTAGT
61.212
57.895
0.84
0.00
44.95
2.24
2873
9806
1.740296
CACGTGGACGGGCCTTTAG
60.740
63.158
7.95
0.00
44.95
1.85
2874
9807
2.344500
CACGTGGACGGGCCTTTA
59.656
61.111
7.95
0.00
44.95
1.85
2875
9808
4.636435
CCACGTGGACGGGCCTTT
62.636
66.667
31.31
0.00
42.34
3.11
2907
9840
3.605412
TAAAGGTCCTCCGCCCCGA
62.605
63.158
0.00
0.00
39.05
5.14
2908
9841
3.078836
TAAAGGTCCTCCGCCCCG
61.079
66.667
0.00
0.00
39.05
5.73
2909
9842
1.969200
GACTAAAGGTCCTCCGCCCC
61.969
65.000
0.00
0.00
38.93
5.80
2910
9843
1.521141
GACTAAAGGTCCTCCGCCC
59.479
63.158
0.00
0.00
38.93
6.13
2911
9844
1.141234
CGACTAAAGGTCCTCCGCC
59.859
63.158
0.00
0.00
41.64
6.13
2912
9845
1.518792
GCGACTAAAGGTCCTCCGC
60.519
63.158
0.00
0.00
41.64
5.54
2913
9846
1.226603
CGCGACTAAAGGTCCTCCG
60.227
63.158
0.00
0.00
41.64
4.63
2914
9847
1.141234
CCGCGACTAAAGGTCCTCC
59.859
63.158
8.23
0.00
41.64
4.30
2915
9848
0.245813
AACCGCGACTAAAGGTCCTC
59.754
55.000
8.23
0.00
41.64
3.71
2916
9849
0.245813
GAACCGCGACTAAAGGTCCT
59.754
55.000
8.23
0.00
41.64
3.85
2917
9850
0.245813
AGAACCGCGACTAAAGGTCC
59.754
55.000
8.23
0.00
41.64
4.46
2918
9851
1.991264
GAAGAACCGCGACTAAAGGTC
59.009
52.381
8.23
0.00
37.26
3.85
2919
9852
1.617357
AGAAGAACCGCGACTAAAGGT
59.383
47.619
8.23
0.00
40.50
3.50
2920
9853
1.993370
CAGAAGAACCGCGACTAAAGG
59.007
52.381
8.23
0.00
0.00
3.11
2921
9854
1.993370
CCAGAAGAACCGCGACTAAAG
59.007
52.381
8.23
0.00
0.00
1.85
2922
9855
1.938016
GCCAGAAGAACCGCGACTAAA
60.938
52.381
8.23
0.00
0.00
1.85
2923
9856
0.389426
GCCAGAAGAACCGCGACTAA
60.389
55.000
8.23
0.00
0.00
2.24
2924
9857
1.214589
GCCAGAAGAACCGCGACTA
59.785
57.895
8.23
0.00
0.00
2.59
2925
9858
2.048127
GCCAGAAGAACCGCGACT
60.048
61.111
8.23
0.30
0.00
4.18
2926
9859
3.119096
GGCCAGAAGAACCGCGAC
61.119
66.667
8.23
0.00
0.00
5.19
2927
9860
3.171828
TTGGCCAGAAGAACCGCGA
62.172
57.895
8.23
0.00
0.00
5.87
2928
9861
2.668212
TTGGCCAGAAGAACCGCG
60.668
61.111
5.11
0.00
0.00
6.46
2929
9862
2.626780
GGTTGGCCAGAAGAACCGC
61.627
63.158
5.11
0.00
30.33
5.68
2930
9863
3.668386
GGTTGGCCAGAAGAACCG
58.332
61.111
5.11
0.00
30.33
4.44
2931
9864
2.626780
GCGGTTGGCCAGAAGAACC
61.627
63.158
12.82
12.82
36.55
3.62
2932
9865
2.954611
GCGGTTGGCCAGAAGAAC
59.045
61.111
5.11
0.00
34.80
3.01
2933
9866
2.668212
CGCGGTTGGCCAGAAGAA
60.668
61.111
5.11
0.00
38.94
2.52
2934
9867
3.621805
TCGCGGTTGGCCAGAAGA
61.622
61.111
5.11
0.00
38.94
2.87
2935
9868
2.501223
TAGTCGCGGTTGGCCAGAAG
62.501
60.000
5.11
1.86
38.94
2.85
2936
9869
2.102109
TTAGTCGCGGTTGGCCAGAA
62.102
55.000
5.11
0.00
38.94
3.02
2937
9870
2.102109
TTTAGTCGCGGTTGGCCAGA
62.102
55.000
5.11
0.00
38.94
3.86
2938
9871
1.635663
CTTTAGTCGCGGTTGGCCAG
61.636
60.000
5.11
0.00
38.94
4.85
2939
9872
1.669760
CTTTAGTCGCGGTTGGCCA
60.670
57.895
0.00
0.00
38.94
5.36
2940
9873
2.396157
CCTTTAGTCGCGGTTGGCC
61.396
63.158
6.13
0.00
38.94
5.36
2941
9874
3.035576
GCCTTTAGTCGCGGTTGGC
62.036
63.158
6.13
8.44
38.69
4.52
2942
9875
2.396157
GGCCTTTAGTCGCGGTTGG
61.396
63.158
6.13
1.60
0.00
3.77
2943
9876
2.736682
CGGCCTTTAGTCGCGGTTG
61.737
63.158
6.13
0.00
0.00
3.77
2944
9877
2.433664
CGGCCTTTAGTCGCGGTT
60.434
61.111
6.13
0.00
0.00
4.44
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.