Multiple sequence alignment - TraesCS3B01G445600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G445600 chr3B 100.000 2882 0 0 1 2882 685224238 685227119 0.000000e+00 5323.0
1 TraesCS3B01G445600 chr3B 87.375 1101 77 28 1798 2882 503983208 503984262 0.000000e+00 1206.0
2 TraesCS3B01G445600 chr2B 97.143 1085 26 5 1798 2882 791285683 791284604 0.000000e+00 1827.0
3 TraesCS3B01G445600 chr1A 96.999 933 24 2 1950 2882 493731652 493732580 0.000000e+00 1565.0
4 TraesCS3B01G445600 chr1A 89.909 882 51 18 1796 2661 517325879 517326738 0.000000e+00 1101.0
5 TraesCS3B01G445600 chr1A 92.547 161 11 1 2722 2882 517326775 517326934 2.230000e-56 230.0
6 TraesCS3B01G445600 chr1A 94.231 104 2 2 1797 1898 493731366 493731467 3.840000e-34 156.0
7 TraesCS3B01G445600 chr7A 87.125 1033 72 33 1867 2882 706403998 706403010 0.000000e+00 1114.0
8 TraesCS3B01G445600 chr7A 88.976 889 52 20 1795 2661 712073244 712074108 0.000000e+00 1057.0
9 TraesCS3B01G445600 chr7A 92.547 161 11 1 2722 2882 712074145 712074304 2.230000e-56 230.0
10 TraesCS3B01G445600 chr3A 87.735 905 62 23 1798 2685 584031713 584032585 0.000000e+00 1011.0
11 TraesCS3B01G445600 chr3A 89.244 595 43 10 1216 1793 655726893 655727483 0.000000e+00 725.0
12 TraesCS3B01G445600 chr3A 88.202 356 27 5 829 1182 655726256 655726598 7.430000e-111 411.0
13 TraesCS3B01G445600 chr3A 88.806 268 11 7 363 621 655725891 655726148 7.750000e-81 311.0
14 TraesCS3B01G445600 chr3A 93.789 161 10 0 2722 2882 584032569 584032729 2.870000e-60 243.0
15 TraesCS3B01G445600 chr3A 95.413 109 3 2 622 729 655726109 655726216 3.820000e-39 172.0
16 TraesCS3B01G445600 chr4A 86.688 924 69 25 1798 2685 428830219 428829314 0.000000e+00 976.0
17 TraesCS3B01G445600 chr1D 93.312 613 26 7 2084 2686 481611729 481612336 0.000000e+00 891.0
18 TraesCS3B01G445600 chr1D 98.137 161 3 0 2722 2882 481612319 481612479 6.080000e-72 281.0
19 TraesCS3B01G445600 chr4B 79.274 936 124 41 1793 2686 623347451 623348358 8.890000e-165 590.0
20 TraesCS3B01G445600 chr4D 83.657 361 52 6 6 362 30553698 30554055 1.650000e-87 333.0
21 TraesCS3B01G445600 chr5A 83.425 362 52 7 6 362 544716522 544716164 2.140000e-86 329.0
22 TraesCS3B01G445600 chr5A 83.562 365 46 12 6 362 544738771 544738413 2.140000e-86 329.0
23 TraesCS3B01G445600 chr5A 83.562 365 46 12 6 362 544782382 544782024 2.140000e-86 329.0
24 TraesCS3B01G445600 chr5A 83.288 365 47 12 6 362 544760048 544759690 9.960000e-85 324.0
25 TraesCS3B01G445600 chr5A 82.451 359 59 4 6 362 400772561 400772917 7.750000e-81 311.0
26 TraesCS3B01G445600 chr5A 93.023 43 2 1 2681 2722 547375373 547375331 8.620000e-06 62.1
27 TraesCS3B01G445600 chr7B 84.731 334 44 7 34 362 230228883 230228552 7.700000e-86 327.0
28 TraesCS3B01G445600 chr6A 83.056 360 55 6 6 362 552716322 552716678 3.580000e-84 322.0
29 TraesCS3B01G445600 chr5B 82.920 363 52 9 6 362 473780790 473781148 4.630000e-83 318.0
30 TraesCS3B01G445600 chr5B 75.103 486 67 33 1807 2256 562640832 562640365 8.210000e-41 178.0
31 TraesCS3B01G445600 chr3D 89.450 218 14 6 2477 2686 134640244 134640460 1.700000e-67 267.0
32 TraesCS3B01G445600 chr2D 89.241 158 17 0 2725 2882 573650316 573650473 6.300000e-47 198.0
33 TraesCS3B01G445600 chr2D 72.917 432 78 27 1798 2215 103241990 103241584 2.350000e-21 113.0
34 TraesCS3B01G445600 chr5D 82.143 112 18 2 1186 1295 362880407 362880296 8.500000e-16 95.3
35 TraesCS3B01G445600 chr2A 93.617 47 1 2 2681 2725 183553653 183553607 5.150000e-08 69.4
36 TraesCS3B01G445600 chr1B 97.500 40 1 0 2683 2722 279445735 279445696 5.150000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G445600 chr3B 685224238 685227119 2881 False 5323.00 5323 100.00000 1 2882 1 chr3B.!!$F2 2881
1 TraesCS3B01G445600 chr3B 503983208 503984262 1054 False 1206.00 1206 87.37500 1798 2882 1 chr3B.!!$F1 1084
2 TraesCS3B01G445600 chr2B 791284604 791285683 1079 True 1827.00 1827 97.14300 1798 2882 1 chr2B.!!$R1 1084
3 TraesCS3B01G445600 chr1A 493731366 493732580 1214 False 860.50 1565 95.61500 1797 2882 2 chr1A.!!$F1 1085
4 TraesCS3B01G445600 chr1A 517325879 517326934 1055 False 665.50 1101 91.22800 1796 2882 2 chr1A.!!$F2 1086
5 TraesCS3B01G445600 chr7A 706403010 706403998 988 True 1114.00 1114 87.12500 1867 2882 1 chr7A.!!$R1 1015
6 TraesCS3B01G445600 chr7A 712073244 712074304 1060 False 643.50 1057 90.76150 1795 2882 2 chr7A.!!$F1 1087
7 TraesCS3B01G445600 chr3A 584031713 584032729 1016 False 627.00 1011 90.76200 1798 2882 2 chr3A.!!$F1 1084
8 TraesCS3B01G445600 chr3A 655725891 655727483 1592 False 404.75 725 90.41625 363 1793 4 chr3A.!!$F2 1430
9 TraesCS3B01G445600 chr4A 428829314 428830219 905 True 976.00 976 86.68800 1798 2685 1 chr4A.!!$R1 887
10 TraesCS3B01G445600 chr1D 481611729 481612479 750 False 586.00 891 95.72450 2084 2882 2 chr1D.!!$F1 798
11 TraesCS3B01G445600 chr4B 623347451 623348358 907 False 590.00 590 79.27400 1793 2686 1 chr4B.!!$F1 893

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
986 997 0.038343 GCTCGATCCAGATCCAGAGC 60.038 60.0 16.59 16.59 40.98 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2262 2729 0.67996 TGCACAGCGCCTAGAGTCTA 60.68 55.0 2.29 0.0 41.33 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.959361 CATAAAAGGTGGTGGAGAATATTCG 58.041 40.000 9.78 0.00 0.00 3.34
25 26 2.622064 AGGTGGTGGAGAATATTCGC 57.378 50.000 10.44 10.44 0.00 4.70
26 27 1.141053 AGGTGGTGGAGAATATTCGCC 59.859 52.381 26.29 26.29 45.94 5.54
33 34 3.577649 GGAGAATATTCGCCGAGATGA 57.422 47.619 20.57 0.00 37.41 2.92
34 35 3.914312 GGAGAATATTCGCCGAGATGAA 58.086 45.455 20.57 0.00 37.41 2.57
35 36 3.923461 GGAGAATATTCGCCGAGATGAAG 59.077 47.826 20.57 0.00 37.41 3.02
36 37 4.551388 GAGAATATTCGCCGAGATGAAGT 58.449 43.478 9.78 0.00 0.00 3.01
37 38 4.950050 AGAATATTCGCCGAGATGAAGTT 58.050 39.130 9.78 0.00 0.00 2.66
38 39 5.360591 AGAATATTCGCCGAGATGAAGTTT 58.639 37.500 9.78 0.00 0.00 2.66
39 40 5.235186 AGAATATTCGCCGAGATGAAGTTTG 59.765 40.000 9.78 0.00 0.00 2.93
40 41 2.163818 TTCGCCGAGATGAAGTTTGT 57.836 45.000 0.00 0.00 0.00 2.83
41 42 2.163818 TCGCCGAGATGAAGTTTGTT 57.836 45.000 0.00 0.00 0.00 2.83
42 43 3.306917 TCGCCGAGATGAAGTTTGTTA 57.693 42.857 0.00 0.00 0.00 2.41
43 44 3.250744 TCGCCGAGATGAAGTTTGTTAG 58.749 45.455 0.00 0.00 0.00 2.34
44 45 3.057104 TCGCCGAGATGAAGTTTGTTAGA 60.057 43.478 0.00 0.00 0.00 2.10
45 46 3.678072 CGCCGAGATGAAGTTTGTTAGAA 59.322 43.478 0.00 0.00 0.00 2.10
46 47 4.330074 CGCCGAGATGAAGTTTGTTAGAAT 59.670 41.667 0.00 0.00 0.00 2.40
47 48 5.163854 CGCCGAGATGAAGTTTGTTAGAATT 60.164 40.000 0.00 0.00 0.00 2.17
48 49 6.024049 GCCGAGATGAAGTTTGTTAGAATTG 58.976 40.000 0.00 0.00 0.00 2.32
49 50 6.348540 GCCGAGATGAAGTTTGTTAGAATTGT 60.349 38.462 0.00 0.00 0.00 2.71
50 51 7.017645 CCGAGATGAAGTTTGTTAGAATTGTG 58.982 38.462 0.00 0.00 0.00 3.33
51 52 7.307989 CCGAGATGAAGTTTGTTAGAATTGTGT 60.308 37.037 0.00 0.00 0.00 3.72
52 53 7.742089 CGAGATGAAGTTTGTTAGAATTGTGTC 59.258 37.037 0.00 0.00 0.00 3.67
53 54 7.576236 AGATGAAGTTTGTTAGAATTGTGTCG 58.424 34.615 0.00 0.00 0.00 4.35
54 55 6.912203 TGAAGTTTGTTAGAATTGTGTCGA 57.088 33.333 0.00 0.00 0.00 4.20
55 56 7.310072 TGAAGTTTGTTAGAATTGTGTCGAA 57.690 32.000 0.00 0.00 0.00 3.71
56 57 7.925993 TGAAGTTTGTTAGAATTGTGTCGAAT 58.074 30.769 0.00 0.00 0.00 3.34
57 58 9.047371 TGAAGTTTGTTAGAATTGTGTCGAATA 57.953 29.630 0.00 0.00 0.00 1.75
71 72 8.780846 TTGTGTCGAATATATTTGTACAAGGT 57.219 30.769 21.33 4.73 31.91 3.50
72 73 9.872721 TTGTGTCGAATATATTTGTACAAGGTA 57.127 29.630 21.33 6.80 31.91 3.08
73 74 9.524106 TGTGTCGAATATATTTGTACAAGGTAG 57.476 33.333 8.56 0.00 0.00 3.18
74 75 8.975439 GTGTCGAATATATTTGTACAAGGTAGG 58.025 37.037 8.56 0.00 0.00 3.18
75 76 8.698210 TGTCGAATATATTTGTACAAGGTAGGT 58.302 33.333 8.56 0.00 0.00 3.08
83 84 7.739498 ATTTGTACAAGGTAGGTAACAGTTG 57.261 36.000 8.56 0.00 41.41 3.16
84 85 5.217978 TGTACAAGGTAGGTAACAGTTGG 57.782 43.478 0.00 0.00 41.41 3.77
85 86 4.900652 TGTACAAGGTAGGTAACAGTTGGA 59.099 41.667 0.00 0.00 41.41 3.53
86 87 4.347360 ACAAGGTAGGTAACAGTTGGAC 57.653 45.455 0.00 0.00 41.41 4.02
87 88 3.971971 ACAAGGTAGGTAACAGTTGGACT 59.028 43.478 0.00 0.00 41.41 3.85
88 89 4.411212 ACAAGGTAGGTAACAGTTGGACTT 59.589 41.667 0.00 0.00 41.41 3.01
89 90 4.618920 AGGTAGGTAACAGTTGGACTTG 57.381 45.455 0.00 0.00 41.41 3.16
90 91 3.326880 AGGTAGGTAACAGTTGGACTTGG 59.673 47.826 0.00 0.00 41.41 3.61
91 92 3.325716 GGTAGGTAACAGTTGGACTTGGA 59.674 47.826 0.00 0.00 41.41 3.53
92 93 3.771577 AGGTAACAGTTGGACTTGGAG 57.228 47.619 0.00 0.00 41.41 3.86
93 94 3.046374 AGGTAACAGTTGGACTTGGAGT 58.954 45.455 0.00 0.00 41.41 3.85
94 95 3.071167 AGGTAACAGTTGGACTTGGAGTC 59.929 47.826 0.00 0.00 41.67 3.36
95 96 2.240493 AACAGTTGGACTTGGAGTCG 57.760 50.000 2.33 0.00 45.96 4.18
96 97 1.120530 ACAGTTGGACTTGGAGTCGT 58.879 50.000 2.33 0.00 45.96 4.34
97 98 2.313317 ACAGTTGGACTTGGAGTCGTA 58.687 47.619 2.33 0.00 45.96 3.43
98 99 2.035576 ACAGTTGGACTTGGAGTCGTAC 59.964 50.000 2.33 3.38 45.96 3.67
99 100 2.035449 CAGTTGGACTTGGAGTCGTACA 59.965 50.000 11.29 0.00 45.96 2.90
100 101 2.296471 AGTTGGACTTGGAGTCGTACAG 59.704 50.000 11.29 0.00 45.96 2.74
101 102 1.991121 TGGACTTGGAGTCGTACAGT 58.009 50.000 2.33 0.00 45.96 3.55
102 103 1.611977 TGGACTTGGAGTCGTACAGTG 59.388 52.381 2.33 0.00 45.96 3.66
103 104 1.612463 GGACTTGGAGTCGTACAGTGT 59.388 52.381 0.00 0.00 45.96 3.55
104 105 2.816087 GGACTTGGAGTCGTACAGTGTA 59.184 50.000 0.00 0.00 45.96 2.90
105 106 3.442977 GGACTTGGAGTCGTACAGTGTAT 59.557 47.826 6.21 0.00 45.96 2.29
106 107 4.637534 GGACTTGGAGTCGTACAGTGTATA 59.362 45.833 6.21 0.00 45.96 1.47
107 108 5.220815 GGACTTGGAGTCGTACAGTGTATAG 60.221 48.000 6.21 4.44 45.96 1.31
108 109 5.494724 ACTTGGAGTCGTACAGTGTATAGA 58.505 41.667 6.21 6.78 0.00 1.98
109 110 5.353678 ACTTGGAGTCGTACAGTGTATAGAC 59.646 44.000 23.30 23.30 0.00 2.59
110 111 4.835678 TGGAGTCGTACAGTGTATAGACA 58.164 43.478 28.14 15.09 0.00 3.41
111 112 4.874396 TGGAGTCGTACAGTGTATAGACAG 59.126 45.833 28.14 10.18 35.82 3.51
112 113 4.272991 GGAGTCGTACAGTGTATAGACAGG 59.727 50.000 28.14 8.91 35.82 4.00
113 114 4.197750 AGTCGTACAGTGTATAGACAGGG 58.802 47.826 28.14 3.86 35.82 4.45
114 115 3.944015 GTCGTACAGTGTATAGACAGGGT 59.056 47.826 24.68 0.00 35.82 4.34
115 116 5.104776 AGTCGTACAGTGTATAGACAGGGTA 60.105 44.000 28.14 0.00 35.82 3.69
116 117 5.762218 GTCGTACAGTGTATAGACAGGGTAT 59.238 44.000 24.68 0.00 35.82 2.73
117 118 5.761726 TCGTACAGTGTATAGACAGGGTATG 59.238 44.000 6.21 11.66 35.82 2.39
118 119 5.761726 CGTACAGTGTATAGACAGGGTATGA 59.238 44.000 6.21 0.00 35.88 2.15
119 120 6.430308 CGTACAGTGTATAGACAGGGTATGAT 59.570 42.308 6.21 0.00 35.88 2.45
120 121 6.656632 ACAGTGTATAGACAGGGTATGATG 57.343 41.667 2.50 0.00 35.82 3.07
121 122 6.136857 ACAGTGTATAGACAGGGTATGATGT 58.863 40.000 2.50 0.00 35.82 3.06
122 123 7.295340 ACAGTGTATAGACAGGGTATGATGTA 58.705 38.462 2.50 0.00 35.82 2.29
123 124 7.950684 ACAGTGTATAGACAGGGTATGATGTAT 59.049 37.037 2.50 0.00 35.82 2.29
124 125 8.807118 CAGTGTATAGACAGGGTATGATGTATT 58.193 37.037 2.50 0.00 35.82 1.89
125 126 8.807118 AGTGTATAGACAGGGTATGATGTATTG 58.193 37.037 2.50 0.00 35.82 1.90
126 127 8.585881 GTGTATAGACAGGGTATGATGTATTGT 58.414 37.037 0.00 0.00 35.82 2.71
127 128 9.154632 TGTATAGACAGGGTATGATGTATTGTT 57.845 33.333 0.00 0.00 0.00 2.83
128 129 9.640963 GTATAGACAGGGTATGATGTATTGTTC 57.359 37.037 0.00 0.00 0.00 3.18
129 130 6.814954 AGACAGGGTATGATGTATTGTTCT 57.185 37.500 0.00 0.00 0.00 3.01
130 131 7.914427 AGACAGGGTATGATGTATTGTTCTA 57.086 36.000 0.00 0.00 0.00 2.10
131 132 8.497910 AGACAGGGTATGATGTATTGTTCTAT 57.502 34.615 0.00 0.00 0.00 1.98
132 133 8.938883 AGACAGGGTATGATGTATTGTTCTATT 58.061 33.333 0.00 0.00 0.00 1.73
135 136 9.658799 CAGGGTATGATGTATTGTTCTATTAGG 57.341 37.037 0.00 0.00 0.00 2.69
136 137 9.615660 AGGGTATGATGTATTGTTCTATTAGGA 57.384 33.333 0.00 0.00 0.00 2.94
137 138 9.654663 GGGTATGATGTATTGTTCTATTAGGAC 57.345 37.037 0.00 0.00 0.00 3.85
142 143 9.599866 TGATGTATTGTTCTATTAGGACACTTG 57.400 33.333 4.20 0.00 0.00 3.16
143 144 9.601217 GATGTATTGTTCTATTAGGACACTTGT 57.399 33.333 4.20 0.00 0.00 3.16
172 173 6.530601 AAACCTCTTATATAATGCAGGGGT 57.469 37.500 15.06 8.42 0.00 4.95
173 174 7.642094 AAACCTCTTATATAATGCAGGGGTA 57.358 36.000 15.06 0.00 0.00 3.69
174 175 6.875972 ACCTCTTATATAATGCAGGGGTAG 57.124 41.667 15.06 0.00 0.00 3.18
175 176 6.571624 ACCTCTTATATAATGCAGGGGTAGA 58.428 40.000 15.06 0.00 0.00 2.59
176 177 6.440965 ACCTCTTATATAATGCAGGGGTAGAC 59.559 42.308 15.06 0.00 0.00 2.59
177 178 6.440647 CCTCTTATATAATGCAGGGGTAGACA 59.559 42.308 0.00 0.00 0.00 3.41
178 179 7.038302 CCTCTTATATAATGCAGGGGTAGACAA 60.038 40.741 0.00 0.00 0.00 3.18
179 180 8.449423 TCTTATATAATGCAGGGGTAGACAAT 57.551 34.615 0.00 0.00 0.00 2.71
180 181 8.321353 TCTTATATAATGCAGGGGTAGACAATG 58.679 37.037 0.00 0.00 0.00 2.82
181 182 6.702449 ATATAATGCAGGGGTAGACAATGA 57.298 37.500 0.00 0.00 0.00 2.57
182 183 3.959495 AATGCAGGGGTAGACAATGAT 57.041 42.857 0.00 0.00 0.00 2.45
183 184 2.715749 TGCAGGGGTAGACAATGATG 57.284 50.000 0.00 0.00 0.00 3.07
184 185 1.915489 TGCAGGGGTAGACAATGATGT 59.085 47.619 0.00 0.00 44.25 3.06
185 186 3.111484 TGCAGGGGTAGACAATGATGTA 58.889 45.455 0.00 0.00 40.74 2.29
186 187 3.521531 TGCAGGGGTAGACAATGATGTAA 59.478 43.478 0.00 0.00 40.74 2.41
187 188 3.877508 GCAGGGGTAGACAATGATGTAAC 59.122 47.826 0.00 0.00 40.74 2.50
188 189 4.625324 GCAGGGGTAGACAATGATGTAACA 60.625 45.833 0.00 0.00 40.74 2.41
189 190 5.684704 CAGGGGTAGACAATGATGTAACAT 58.315 41.667 0.00 0.00 40.74 2.71
190 191 6.687901 GCAGGGGTAGACAATGATGTAACATA 60.688 42.308 0.00 0.00 40.74 2.29
191 192 7.453393 CAGGGGTAGACAATGATGTAACATAT 58.547 38.462 0.00 0.00 40.74 1.78
192 193 7.388776 CAGGGGTAGACAATGATGTAACATATG 59.611 40.741 0.00 0.00 40.74 1.78
193 194 6.149474 GGGGTAGACAATGATGTAACATATGC 59.851 42.308 1.58 0.00 40.74 3.14
194 195 6.149474 GGGTAGACAATGATGTAACATATGCC 59.851 42.308 1.58 0.00 40.74 4.40
195 196 6.710295 GGTAGACAATGATGTAACATATGCCA 59.290 38.462 1.58 0.00 40.74 4.92
196 197 7.228507 GGTAGACAATGATGTAACATATGCCAA 59.771 37.037 1.58 0.00 40.74 4.52
197 198 7.031226 AGACAATGATGTAACATATGCCAAC 57.969 36.000 1.58 0.00 40.74 3.77
198 199 6.602803 AGACAATGATGTAACATATGCCAACA 59.397 34.615 1.58 5.28 40.74 3.33
199 200 7.286087 AGACAATGATGTAACATATGCCAACAT 59.714 33.333 14.60 14.60 40.74 2.71
200 201 8.462589 ACAATGATGTAACATATGCCAACATA 57.537 30.769 14.65 7.31 39.50 2.29
201 202 8.911965 ACAATGATGTAACATATGCCAACATAA 58.088 29.630 14.65 10.18 39.02 1.90
202 203 9.917129 CAATGATGTAACATATGCCAACATAAT 57.083 29.630 14.65 11.57 41.99 1.28
205 206 8.729756 TGATGTAACATATGCCAACATAATAGC 58.270 33.333 14.65 6.38 41.99 2.97
206 207 8.634335 ATGTAACATATGCCAACATAATAGCA 57.366 30.769 13.57 0.00 41.99 3.49
212 213 4.927049 ATGCCAACATAATAGCATAGGCT 58.073 39.130 7.23 7.23 43.85 4.58
213 214 5.327732 ATGCCAACATAATAGCATAGGCTT 58.672 37.500 7.42 0.00 43.85 4.35
214 215 5.184479 ATGCCAACATAATAGCATAGGCTTG 59.816 40.000 7.42 1.63 43.85 4.01
215 216 8.239259 ATGCCAACATAATAGCATAGGCTTGC 62.239 42.308 7.42 11.97 43.85 4.01
221 222 2.597340 GCATAGGCTTGCAGGGGA 59.403 61.111 14.15 0.00 42.31 4.81
222 223 1.527844 GCATAGGCTTGCAGGGGAG 60.528 63.158 14.15 0.00 42.31 4.30
223 224 1.527844 CATAGGCTTGCAGGGGAGC 60.528 63.158 0.00 0.00 38.17 4.70
261 262 2.889617 CGGGTGACTGGTATGCGA 59.110 61.111 0.00 0.00 0.00 5.10
262 263 1.441729 CGGGTGACTGGTATGCGAT 59.558 57.895 0.00 0.00 0.00 4.58
263 264 0.671796 CGGGTGACTGGTATGCGATA 59.328 55.000 0.00 0.00 0.00 2.92
264 265 1.272490 CGGGTGACTGGTATGCGATAT 59.728 52.381 0.00 0.00 0.00 1.63
265 266 2.288825 CGGGTGACTGGTATGCGATATT 60.289 50.000 0.00 0.00 0.00 1.28
266 267 3.067106 GGGTGACTGGTATGCGATATTG 58.933 50.000 0.00 0.00 0.00 1.90
267 268 3.494398 GGGTGACTGGTATGCGATATTGT 60.494 47.826 0.00 0.00 0.00 2.71
268 269 3.494626 GGTGACTGGTATGCGATATTGTG 59.505 47.826 0.00 0.00 0.00 3.33
269 270 4.368315 GTGACTGGTATGCGATATTGTGA 58.632 43.478 0.00 0.00 0.00 3.58
270 271 4.991056 GTGACTGGTATGCGATATTGTGAT 59.009 41.667 0.00 0.00 0.00 3.06
271 272 4.990426 TGACTGGTATGCGATATTGTGATG 59.010 41.667 0.00 0.00 0.00 3.07
272 273 4.318332 ACTGGTATGCGATATTGTGATGG 58.682 43.478 0.00 0.00 0.00 3.51
273 274 4.202357 ACTGGTATGCGATATTGTGATGGT 60.202 41.667 0.00 0.00 0.00 3.55
274 275 4.064388 TGGTATGCGATATTGTGATGGTG 58.936 43.478 0.00 0.00 0.00 4.17
275 276 4.065088 GGTATGCGATATTGTGATGGTGT 58.935 43.478 0.00 0.00 0.00 4.16
276 277 4.152402 GGTATGCGATATTGTGATGGTGTC 59.848 45.833 0.00 0.00 0.00 3.67
277 278 3.258971 TGCGATATTGTGATGGTGTCA 57.741 42.857 0.00 0.00 0.00 3.58
284 285 2.840974 GTGATGGTGTCACGGGAAG 58.159 57.895 0.00 0.00 46.99 3.46
285 286 0.673644 GTGATGGTGTCACGGGAAGG 60.674 60.000 0.00 0.00 46.99 3.46
286 287 0.834261 TGATGGTGTCACGGGAAGGA 60.834 55.000 0.00 0.00 0.00 3.36
287 288 0.108138 GATGGTGTCACGGGAAGGAG 60.108 60.000 0.00 0.00 0.00 3.69
288 289 2.047179 GGTGTCACGGGAAGGAGC 60.047 66.667 0.00 0.00 0.00 4.70
289 290 2.741092 GTGTCACGGGAAGGAGCA 59.259 61.111 0.00 0.00 0.00 4.26
290 291 1.296715 GTGTCACGGGAAGGAGCAT 59.703 57.895 0.00 0.00 0.00 3.79
291 292 0.741221 GTGTCACGGGAAGGAGCATC 60.741 60.000 0.00 0.00 0.00 3.91
292 293 0.904865 TGTCACGGGAAGGAGCATCT 60.905 55.000 0.00 0.00 33.73 2.90
293 294 0.460987 GTCACGGGAAGGAGCATCTG 60.461 60.000 0.00 0.00 33.73 2.90
294 295 0.904865 TCACGGGAAGGAGCATCTGT 60.905 55.000 0.00 0.00 33.73 3.41
295 296 0.824109 CACGGGAAGGAGCATCTGTA 59.176 55.000 0.00 0.00 33.73 2.74
296 297 1.115467 ACGGGAAGGAGCATCTGTAG 58.885 55.000 0.00 0.00 33.73 2.74
297 298 1.115467 CGGGAAGGAGCATCTGTAGT 58.885 55.000 0.00 0.00 33.73 2.73
298 299 1.067821 CGGGAAGGAGCATCTGTAGTC 59.932 57.143 0.00 0.00 33.73 2.59
299 300 2.111384 GGGAAGGAGCATCTGTAGTCA 58.889 52.381 0.00 0.00 33.73 3.41
300 301 2.102252 GGGAAGGAGCATCTGTAGTCAG 59.898 54.545 0.00 0.00 42.54 3.51
301 302 2.102252 GGAAGGAGCATCTGTAGTCAGG 59.898 54.545 0.00 0.00 41.59 3.86
302 303 1.118838 AGGAGCATCTGTAGTCAGGC 58.881 55.000 0.00 0.00 41.59 4.85
303 304 0.105778 GGAGCATCTGTAGTCAGGCC 59.894 60.000 0.00 0.00 41.59 5.19
304 305 0.105778 GAGCATCTGTAGTCAGGCCC 59.894 60.000 0.00 0.00 41.59 5.80
305 306 0.326048 AGCATCTGTAGTCAGGCCCT 60.326 55.000 0.00 0.00 41.59 5.19
306 307 0.105778 GCATCTGTAGTCAGGCCCTC 59.894 60.000 0.00 0.00 41.59 4.30
307 308 0.387202 CATCTGTAGTCAGGCCCTCG 59.613 60.000 0.00 0.00 41.59 4.63
308 309 0.259065 ATCTGTAGTCAGGCCCTCGA 59.741 55.000 0.00 0.00 41.59 4.04
309 310 0.394488 TCTGTAGTCAGGCCCTCGAG 60.394 60.000 5.13 5.13 41.59 4.04
310 311 0.394488 CTGTAGTCAGGCCCTCGAGA 60.394 60.000 15.71 0.00 37.97 4.04
311 312 0.259065 TGTAGTCAGGCCCTCGAGAT 59.741 55.000 15.71 0.00 0.00 2.75
312 313 0.671251 GTAGTCAGGCCCTCGAGATG 59.329 60.000 15.71 5.73 0.00 2.90
313 314 0.259065 TAGTCAGGCCCTCGAGATGT 59.741 55.000 15.71 0.00 0.00 3.06
314 315 0.259065 AGTCAGGCCCTCGAGATGTA 59.741 55.000 15.71 0.00 0.00 2.29
315 316 0.671251 GTCAGGCCCTCGAGATGTAG 59.329 60.000 15.71 0.68 0.00 2.74
316 317 1.109920 TCAGGCCCTCGAGATGTAGC 61.110 60.000 15.71 8.31 0.00 3.58
317 318 1.834822 AGGCCCTCGAGATGTAGCC 60.835 63.158 15.71 16.71 40.79 3.93
318 319 2.134287 GGCCCTCGAGATGTAGCCA 61.134 63.158 15.71 0.00 40.20 4.75
319 320 1.476007 GGCCCTCGAGATGTAGCCAT 61.476 60.000 15.71 0.00 40.20 4.40
320 321 1.257743 GCCCTCGAGATGTAGCCATA 58.742 55.000 15.71 0.00 0.00 2.74
321 322 1.827969 GCCCTCGAGATGTAGCCATAT 59.172 52.381 15.71 0.00 0.00 1.78
322 323 2.159170 GCCCTCGAGATGTAGCCATATC 60.159 54.545 15.71 0.00 36.23 1.63
330 331 5.078411 AGATGTAGCCATATCGATGAACC 57.922 43.478 8.54 0.00 34.73 3.62
331 332 4.774726 AGATGTAGCCATATCGATGAACCT 59.225 41.667 8.54 2.13 34.73 3.50
332 333 4.521130 TGTAGCCATATCGATGAACCTC 57.479 45.455 8.54 0.00 34.73 3.85
333 334 3.895041 TGTAGCCATATCGATGAACCTCA 59.105 43.478 8.54 0.00 34.73 3.86
334 335 4.528206 TGTAGCCATATCGATGAACCTCAT 59.472 41.667 8.54 0.00 40.34 2.90
335 336 4.630644 AGCCATATCGATGAACCTCATT 57.369 40.909 8.54 0.00 37.20 2.57
336 337 5.745312 AGCCATATCGATGAACCTCATTA 57.255 39.130 8.54 0.00 37.20 1.90
337 338 6.114187 AGCCATATCGATGAACCTCATTAA 57.886 37.500 8.54 0.00 37.20 1.40
338 339 5.934625 AGCCATATCGATGAACCTCATTAAC 59.065 40.000 8.54 0.00 37.20 2.01
339 340 5.700832 GCCATATCGATGAACCTCATTAACA 59.299 40.000 8.54 0.00 37.20 2.41
340 341 6.204688 GCCATATCGATGAACCTCATTAACAA 59.795 38.462 8.54 0.00 37.20 2.83
341 342 7.255104 GCCATATCGATGAACCTCATTAACAAA 60.255 37.037 8.54 0.00 37.20 2.83
342 343 8.786898 CCATATCGATGAACCTCATTAACAAAT 58.213 33.333 8.54 0.00 37.20 2.32
343 344 9.817365 CATATCGATGAACCTCATTAACAAATC 57.183 33.333 8.54 0.00 37.20 2.17
344 345 9.784531 ATATCGATGAACCTCATTAACAAATCT 57.215 29.630 8.54 0.00 37.20 2.40
345 346 7.539712 TCGATGAACCTCATTAACAAATCTC 57.460 36.000 0.00 0.00 37.20 2.75
346 347 6.255670 TCGATGAACCTCATTAACAAATCTCG 59.744 38.462 0.00 0.00 37.20 4.04
347 348 6.510157 CGATGAACCTCATTAACAAATCTCGG 60.510 42.308 0.00 0.00 37.20 4.63
348 349 5.556915 TGAACCTCATTAACAAATCTCGGT 58.443 37.500 0.00 0.00 0.00 4.69
349 350 6.703319 TGAACCTCATTAACAAATCTCGGTA 58.297 36.000 0.00 0.00 0.00 4.02
350 351 7.335627 TGAACCTCATTAACAAATCTCGGTAT 58.664 34.615 0.00 0.00 0.00 2.73
351 352 7.494625 TGAACCTCATTAACAAATCTCGGTATC 59.505 37.037 0.00 0.00 0.00 2.24
352 353 5.983720 ACCTCATTAACAAATCTCGGTATCG 59.016 40.000 0.00 0.00 37.82 2.92
353 354 5.983720 CCTCATTAACAAATCTCGGTATCGT 59.016 40.000 0.00 0.00 37.69 3.73
354 355 6.074302 CCTCATTAACAAATCTCGGTATCGTG 60.074 42.308 0.00 0.00 37.69 4.35
355 356 6.334989 TCATTAACAAATCTCGGTATCGTGT 58.665 36.000 0.00 0.00 37.69 4.49
356 357 6.474427 TCATTAACAAATCTCGGTATCGTGTC 59.526 38.462 0.00 0.00 37.69 3.67
357 358 4.451629 AACAAATCTCGGTATCGTGTCT 57.548 40.909 0.00 0.00 37.69 3.41
358 359 4.451629 ACAAATCTCGGTATCGTGTCTT 57.548 40.909 0.00 0.00 37.69 3.01
359 360 4.174009 ACAAATCTCGGTATCGTGTCTTG 58.826 43.478 0.00 4.30 37.69 3.02
360 361 4.174009 CAAATCTCGGTATCGTGTCTTGT 58.826 43.478 0.00 0.00 37.69 3.16
361 362 2.913777 TCTCGGTATCGTGTCTTGTG 57.086 50.000 0.00 0.00 37.69 3.33
374 375 0.666274 TCTTGTGCTACGCGTCTTGG 60.666 55.000 18.63 6.02 0.00 3.61
384 385 5.162075 GCTACGCGTCTTGGATTATTCTAT 58.838 41.667 18.63 0.00 0.00 1.98
385 386 6.072342 TGCTACGCGTCTTGGATTATTCTATA 60.072 38.462 18.63 0.00 0.00 1.31
386 387 6.469595 GCTACGCGTCTTGGATTATTCTATAG 59.530 42.308 18.63 1.53 0.00 1.31
387 388 5.162075 ACGCGTCTTGGATTATTCTATAGC 58.838 41.667 5.58 0.00 0.00 2.97
388 389 4.263209 CGCGTCTTGGATTATTCTATAGCG 59.737 45.833 0.00 0.00 35.64 4.26
389 390 5.162075 GCGTCTTGGATTATTCTATAGCGT 58.838 41.667 0.00 0.00 0.00 5.07
392 402 6.641314 CGTCTTGGATTATTCTATAGCGTGTT 59.359 38.462 0.00 0.00 0.00 3.32
394 404 8.827677 GTCTTGGATTATTCTATAGCGTGTTTT 58.172 33.333 0.00 0.00 0.00 2.43
487 497 2.834618 GCCATTTGATCGGGTCGGC 61.835 63.158 0.00 0.00 0.00 5.54
525 535 2.225255 GCCTGAAAGTCTTTGAGAGCAC 59.775 50.000 12.80 0.00 0.00 4.40
526 536 3.470709 CCTGAAAGTCTTTGAGAGCACA 58.529 45.455 12.80 0.00 0.00 4.57
527 537 3.497640 CCTGAAAGTCTTTGAGAGCACAG 59.502 47.826 12.80 7.06 0.00 3.66
528 538 4.375272 CTGAAAGTCTTTGAGAGCACAGA 58.625 43.478 5.94 0.00 0.00 3.41
529 539 4.375272 TGAAAGTCTTTGAGAGCACAGAG 58.625 43.478 1.60 0.00 31.86 3.35
530 540 2.453983 AGTCTTTGAGAGCACAGAGC 57.546 50.000 0.00 0.00 46.19 4.09
553 563 5.630680 GCAGAGTCAATTAACCAAACACATG 59.369 40.000 0.00 0.00 0.00 3.21
562 572 0.238289 CCAAACACATGCACTCGACC 59.762 55.000 0.00 0.00 0.00 4.79
573 583 1.094073 CACTCGACCGGGTCTCGTAT 61.094 60.000 23.86 3.35 37.11 3.06
591 601 3.417969 CGTATTGACGTTATCTCTCGTGC 59.582 47.826 0.00 0.00 44.31 5.34
592 602 1.891178 TTGACGTTATCTCTCGTGCG 58.109 50.000 0.00 0.00 40.39 5.34
593 603 0.522705 TGACGTTATCTCTCGTGCGC 60.523 55.000 0.00 0.00 40.39 6.09
594 604 1.521749 GACGTTATCTCTCGTGCGCG 61.522 60.000 14.79 14.79 40.39 6.86
595 605 1.582937 CGTTATCTCTCGTGCGCGT 60.583 57.895 20.50 1.80 39.49 6.01
596 606 0.315625 CGTTATCTCTCGTGCGCGTA 60.316 55.000 20.50 0.00 39.49 4.42
597 607 1.659491 CGTTATCTCTCGTGCGCGTAT 60.659 52.381 20.50 11.40 39.49 3.06
598 608 1.709203 GTTATCTCTCGTGCGCGTATG 59.291 52.381 20.50 10.41 39.49 2.39
599 609 0.237498 TATCTCTCGTGCGCGTATGG 59.763 55.000 20.50 7.47 39.49 2.74
600 610 1.725557 ATCTCTCGTGCGCGTATGGT 61.726 55.000 20.50 4.07 39.49 3.55
601 611 2.202557 TCTCGTGCGCGTATGGTG 60.203 61.111 20.50 9.81 39.49 4.17
602 612 2.506217 CTCGTGCGCGTATGGTGT 60.506 61.111 20.50 0.00 39.49 4.16
603 613 2.048970 TCGTGCGCGTATGGTGTT 60.049 55.556 20.50 0.00 39.49 3.32
604 614 0.799152 CTCGTGCGCGTATGGTGTTA 60.799 55.000 20.50 0.00 39.49 2.41
605 615 0.388263 TCGTGCGCGTATGGTGTTAA 60.388 50.000 20.50 0.00 39.49 2.01
606 616 0.439214 CGTGCGCGTATGGTGTTAAA 59.561 50.000 12.43 0.00 0.00 1.52
607 617 1.784115 CGTGCGCGTATGGTGTTAAAC 60.784 52.381 12.43 0.00 0.00 2.01
608 618 1.194997 GTGCGCGTATGGTGTTAAACA 59.805 47.619 8.43 0.00 0.00 2.83
609 619 1.871676 TGCGCGTATGGTGTTAAACAA 59.128 42.857 8.43 0.00 0.00 2.83
610 620 2.484651 TGCGCGTATGGTGTTAAACAAT 59.515 40.909 8.43 0.00 0.00 2.71
611 621 3.058155 TGCGCGTATGGTGTTAAACAATT 60.058 39.130 8.43 0.00 0.00 2.32
612 622 3.299542 GCGCGTATGGTGTTAAACAATTG 59.700 43.478 8.43 3.24 0.00 2.32
613 623 3.299542 CGCGTATGGTGTTAAACAATTGC 59.700 43.478 5.05 0.00 0.00 3.56
614 624 4.230657 GCGTATGGTGTTAAACAATTGCA 58.769 39.130 5.05 0.00 0.00 4.08
615 625 4.681942 GCGTATGGTGTTAAACAATTGCAA 59.318 37.500 5.05 0.00 0.00 4.08
616 626 5.164100 GCGTATGGTGTTAAACAATTGCAAG 60.164 40.000 4.94 0.00 0.00 4.01
617 627 5.344665 CGTATGGTGTTAAACAATTGCAAGG 59.655 40.000 4.94 1.96 0.00 3.61
618 628 4.065321 TGGTGTTAAACAATTGCAAGGG 57.935 40.909 4.94 1.55 0.00 3.95
619 629 3.181461 TGGTGTTAAACAATTGCAAGGGG 60.181 43.478 4.94 0.00 0.00 4.79
620 630 3.181459 GGTGTTAAACAATTGCAAGGGGT 60.181 43.478 4.94 0.00 0.00 4.95
644 654 2.048970 TCGTGCGCGTATGGTGTT 60.049 55.556 20.50 0.00 39.49 3.32
657 667 5.454232 GCGTATGGTGTTATACAATTGCAAC 59.546 40.000 0.00 8.14 34.02 4.17
706 716 1.300931 CCATATGCGGTGGACCTCG 60.301 63.158 0.00 0.00 39.12 4.63
720 730 3.772572 TGGACCTCGATTGGACTGAATTA 59.227 43.478 0.00 0.00 0.00 1.40
722 732 4.811557 GGACCTCGATTGGACTGAATTAAG 59.188 45.833 0.00 0.00 0.00 1.85
723 733 4.192317 ACCTCGATTGGACTGAATTAAGC 58.808 43.478 0.00 0.00 0.00 3.09
725 735 3.194861 TCGATTGGACTGAATTAAGCCG 58.805 45.455 0.00 0.00 0.00 5.52
726 736 3.118920 TCGATTGGACTGAATTAAGCCGA 60.119 43.478 0.00 0.00 0.00 5.54
727 737 3.809832 CGATTGGACTGAATTAAGCCGAT 59.190 43.478 5.95 5.95 0.00 4.18
728 738 4.319046 CGATTGGACTGAATTAAGCCGATG 60.319 45.833 9.58 2.12 0.00 3.84
729 739 3.627395 TGGACTGAATTAAGCCGATGT 57.373 42.857 0.00 0.00 0.00 3.06
730 740 3.950397 TGGACTGAATTAAGCCGATGTT 58.050 40.909 0.00 0.00 0.00 2.71
731 741 4.331968 TGGACTGAATTAAGCCGATGTTT 58.668 39.130 0.00 0.00 0.00 2.83
732 742 4.764823 TGGACTGAATTAAGCCGATGTTTT 59.235 37.500 0.00 0.00 0.00 2.43
733 743 5.242838 TGGACTGAATTAAGCCGATGTTTTT 59.757 36.000 0.00 0.00 0.00 1.94
734 744 5.800438 GGACTGAATTAAGCCGATGTTTTTC 59.200 40.000 0.00 0.00 0.00 2.29
735 745 6.349363 GGACTGAATTAAGCCGATGTTTTTCT 60.349 38.462 0.00 0.00 0.00 2.52
736 746 6.981722 ACTGAATTAAGCCGATGTTTTTCTT 58.018 32.000 0.00 0.00 0.00 2.52
737 747 7.433680 ACTGAATTAAGCCGATGTTTTTCTTT 58.566 30.769 0.00 0.00 0.00 2.52
738 748 7.926018 ACTGAATTAAGCCGATGTTTTTCTTTT 59.074 29.630 0.00 0.00 0.00 2.27
739 749 8.655651 TGAATTAAGCCGATGTTTTTCTTTTT 57.344 26.923 0.00 0.00 0.00 1.94
740 750 8.547069 TGAATTAAGCCGATGTTTTTCTTTTTG 58.453 29.630 0.00 0.00 0.00 2.44
741 751 4.794248 AAGCCGATGTTTTTCTTTTTGC 57.206 36.364 0.00 0.00 0.00 3.68
742 752 2.794350 AGCCGATGTTTTTCTTTTTGCG 59.206 40.909 0.00 0.00 0.00 4.85
743 753 2.096958 GCCGATGTTTTTCTTTTTGCGG 60.097 45.455 0.00 0.00 39.23 5.69
744 754 3.376540 CCGATGTTTTTCTTTTTGCGGA 58.623 40.909 0.00 0.00 38.57 5.54
745 755 3.425193 CCGATGTTTTTCTTTTTGCGGAG 59.575 43.478 0.00 0.00 38.57 4.63
746 756 4.286910 CGATGTTTTTCTTTTTGCGGAGA 58.713 39.130 0.00 0.00 0.00 3.71
747 757 4.737765 CGATGTTTTTCTTTTTGCGGAGAA 59.262 37.500 0.00 0.00 0.00 2.87
748 758 5.231147 CGATGTTTTTCTTTTTGCGGAGAAA 59.769 36.000 0.00 0.00 39.42 2.52
749 759 6.237701 CGATGTTTTTCTTTTTGCGGAGAAAA 60.238 34.615 7.06 7.06 45.22 2.29
750 760 6.401955 TGTTTTTCTTTTTGCGGAGAAAAG 57.598 33.333 13.88 13.88 46.50 2.27
751 761 5.929415 TGTTTTTCTTTTTGCGGAGAAAAGT 59.071 32.000 17.12 0.00 46.50 2.66
796 806 6.208599 ACCAAGTGGACATAACTAAACCATTG 59.791 38.462 3.83 0.00 38.94 2.82
797 807 5.897377 AGTGGACATAACTAAACCATTGC 57.103 39.130 0.00 0.00 33.19 3.56
798 808 4.394920 AGTGGACATAACTAAACCATTGCG 59.605 41.667 0.00 0.00 33.19 4.85
799 809 3.692101 TGGACATAACTAAACCATTGCGG 59.308 43.478 0.00 0.00 42.50 5.69
800 810 3.066203 GGACATAACTAAACCATTGCGGG 59.934 47.826 0.00 0.00 40.22 6.13
801 811 3.942748 GACATAACTAAACCATTGCGGGA 59.057 43.478 0.00 0.00 40.22 5.14
802 812 4.337145 ACATAACTAAACCATTGCGGGAA 58.663 39.130 0.00 0.00 40.22 3.97
803 813 4.398044 ACATAACTAAACCATTGCGGGAAG 59.602 41.667 0.00 0.00 40.22 3.46
816 826 1.233019 CGGGAAGCATCATTAGCAGG 58.767 55.000 0.00 0.00 0.00 4.85
817 827 1.475751 CGGGAAGCATCATTAGCAGGT 60.476 52.381 0.00 0.00 0.00 4.00
818 828 2.659428 GGGAAGCATCATTAGCAGGTT 58.341 47.619 0.00 0.00 0.00 3.50
819 829 2.620585 GGGAAGCATCATTAGCAGGTTC 59.379 50.000 0.00 0.00 37.66 3.62
820 830 3.978718 GAAGCATCATTAGCAGGTTCC 57.021 47.619 0.00 0.00 33.65 3.62
821 831 3.282021 GAAGCATCATTAGCAGGTTCCA 58.718 45.455 0.00 0.00 33.65 3.53
822 832 2.648059 AGCATCATTAGCAGGTTCCAC 58.352 47.619 0.00 0.00 0.00 4.02
823 833 2.240667 AGCATCATTAGCAGGTTCCACT 59.759 45.455 0.00 0.00 0.00 4.00
824 834 3.455910 AGCATCATTAGCAGGTTCCACTA 59.544 43.478 0.00 0.00 0.00 2.74
825 835 3.561725 GCATCATTAGCAGGTTCCACTAC 59.438 47.826 0.00 0.00 0.00 2.73
826 836 4.684485 GCATCATTAGCAGGTTCCACTACT 60.684 45.833 0.00 0.00 0.00 2.57
827 837 4.737855 TCATTAGCAGGTTCCACTACTC 57.262 45.455 0.00 0.00 0.00 2.59
832 842 2.895404 AGCAGGTTCCACTACTCGTAAA 59.105 45.455 0.00 0.00 0.00 2.01
844 854 7.124298 TCCACTACTCGTAAACTACTACTAGGA 59.876 40.741 0.00 0.00 0.00 2.94
884 894 1.597195 TGTGCGTCTTGTTGTAGCAAG 59.403 47.619 2.49 2.49 45.18 4.01
889 899 4.209112 GCGTCTTGTTGTAGCAAGTTTAC 58.791 43.478 8.07 0.21 44.41 2.01
895 905 1.872388 TGTAGCAAGTTTACGCAGCA 58.128 45.000 0.00 0.00 0.00 4.41
896 906 2.214347 TGTAGCAAGTTTACGCAGCAA 58.786 42.857 0.00 0.00 0.00 3.91
901 911 2.032030 GCAAGTTTACGCAGCAAGAGAA 60.032 45.455 0.00 0.00 0.00 2.87
902 912 3.545633 CAAGTTTACGCAGCAAGAGAAC 58.454 45.455 0.00 0.00 0.00 3.01
907 917 4.624336 TTACGCAGCAAGAGAACAAAAA 57.376 36.364 0.00 0.00 0.00 1.94
923 934 4.002316 ACAAAAAGCAAAAGCAAGCTCAA 58.998 34.783 0.00 0.00 40.90 3.02
980 991 2.097466 GCTAGCTAGCTCGATCCAGATC 59.903 54.545 33.71 4.59 45.62 2.75
981 992 1.544724 AGCTAGCTCGATCCAGATCC 58.455 55.000 12.68 0.00 34.40 3.36
982 993 1.202989 AGCTAGCTCGATCCAGATCCA 60.203 52.381 12.68 0.00 34.40 3.41
983 994 1.202114 GCTAGCTCGATCCAGATCCAG 59.798 57.143 7.70 0.26 34.40 3.86
984 995 2.789213 CTAGCTCGATCCAGATCCAGA 58.211 52.381 6.47 0.00 34.40 3.86
985 996 1.619654 AGCTCGATCCAGATCCAGAG 58.380 55.000 6.47 7.17 34.40 3.35
986 997 0.038343 GCTCGATCCAGATCCAGAGC 60.038 60.000 16.59 16.59 40.98 4.09
987 998 0.240678 CTCGATCCAGATCCAGAGCG 59.759 60.000 12.58 12.58 42.92 5.03
988 999 1.175347 TCGATCCAGATCCAGAGCGG 61.175 60.000 17.08 3.03 41.92 5.52
1049 1060 2.267681 GACCGCTTCGATGTCTCCGT 62.268 60.000 0.00 0.00 0.00 4.69
1059 1070 4.796231 GTCTCCGTGCCGATGCGT 62.796 66.667 0.00 0.00 41.78 5.24
1094 1105 4.445448 GGGAACTAGGATCGACTGGTACTA 60.445 50.000 0.00 0.00 31.47 1.82
1098 1109 3.211718 AGGATCGACTGGTACTACCTC 57.788 52.381 6.79 0.00 39.58 3.85
1120 1131 5.198207 TCCGTCTAGGATCATTAGTGTTCA 58.802 41.667 0.00 0.00 45.98 3.18
1126 1137 8.516234 GTCTAGGATCATTAGTGTTCATCGTAT 58.484 37.037 0.00 0.00 0.00 3.06
1131 1142 9.438291 GGATCATTAGTGTTCATCGTATTTTTG 57.562 33.333 0.00 0.00 0.00 2.44
1157 1168 8.987890 GTTAAAGTTTGACCACATTAATGCATT 58.012 29.630 17.56 17.56 0.00 3.56
1162 1173 9.369904 AGTTTGACCACATTAATGCATTTAATC 57.630 29.630 18.75 6.87 38.23 1.75
1300 1587 6.545666 CCATAGACTAGTATATCAGGGCAGAG 59.454 46.154 7.06 0.00 0.00 3.35
1318 1605 5.064834 GGCAGAGGTAGCATGTTTTAGTTAC 59.935 44.000 0.00 0.00 0.00 2.50
1322 1609 8.818057 CAGAGGTAGCATGTTTTAGTTACATAC 58.182 37.037 0.00 0.00 34.59 2.39
1324 1611 8.718102 AGGTAGCATGTTTTAGTTACATACAG 57.282 34.615 0.00 0.00 34.59 2.74
1378 1673 8.986477 TCAAACTGATCCATATATATCGTGTG 57.014 34.615 0.00 0.00 0.00 3.82
1554 1855 2.807045 GTGCTCACAGACCGCTCG 60.807 66.667 0.00 0.00 0.00 5.03
1563 1864 1.086067 CAGACCGCTCGTTCATGCAT 61.086 55.000 0.00 0.00 0.00 3.96
1566 1867 0.530650 ACCGCTCGTTCATGCATAGG 60.531 55.000 0.00 0.00 0.00 2.57
1569 1870 1.154205 GCTCGTTCATGCATAGGCGT 61.154 55.000 0.00 0.00 45.35 5.68
1593 1894 0.947244 AATTCATCTTCGGCGCCATC 59.053 50.000 28.98 0.00 0.00 3.51
1595 1896 0.107703 TTCATCTTCGGCGCCATCTT 60.108 50.000 28.98 3.33 0.00 2.40
1596 1897 0.107703 TCATCTTCGGCGCCATCTTT 60.108 50.000 28.98 4.59 0.00 2.52
1597 1898 0.028505 CATCTTCGGCGCCATCTTTG 59.971 55.000 28.98 14.09 0.00 2.77
1630 1931 4.227134 CTCCTCGCCACCCATCCG 62.227 72.222 0.00 0.00 0.00 4.18
1689 1990 2.440796 CATCCCAAGGCGGTGCAT 60.441 61.111 0.00 0.00 0.00 3.96
1725 2026 3.809832 ACTTCAAGGTCATCTTCAACACG 59.190 43.478 0.00 0.00 32.41 4.49
1728 2029 1.800805 AGGTCATCTTCAACACGCTG 58.199 50.000 0.00 0.00 0.00 5.18
1737 2038 3.923864 AACACGCTGCCCGACTCA 61.924 61.111 0.61 0.00 41.02 3.41
2082 2533 1.636340 GATCACGCAACGATTCCCG 59.364 57.895 0.00 0.00 45.44 5.14
2202 2667 3.942748 TCCTAATTTGTGTATGTTCGCCC 59.057 43.478 0.00 0.00 0.00 6.13
2262 2729 2.248248 TGTTCTCCCTCAATCGTCTGT 58.752 47.619 0.00 0.00 0.00 3.41
2714 3265 4.015872 CAGTACACCTGCTTTTTCCCTA 57.984 45.455 0.00 0.00 33.59 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.531287 GCGAATATTCTCCACCACCTTTTAT 59.469 40.000 13.45 0.00 0.00 1.40
2 3 4.879545 GCGAATATTCTCCACCACCTTTTA 59.120 41.667 13.45 0.00 0.00 1.52
3 4 3.694566 GCGAATATTCTCCACCACCTTTT 59.305 43.478 13.45 0.00 0.00 2.27
5 6 2.421529 GGCGAATATTCTCCACCACCTT 60.422 50.000 17.79 0.00 32.39 3.50
6 7 1.141053 GGCGAATATTCTCCACCACCT 59.859 52.381 17.79 0.00 32.39 4.00
7 8 1.594331 GGCGAATATTCTCCACCACC 58.406 55.000 17.79 3.15 32.39 4.61
8 9 1.202486 TCGGCGAATATTCTCCACCAC 60.202 52.381 21.40 0.00 31.58 4.16
9 10 1.068588 CTCGGCGAATATTCTCCACCA 59.931 52.381 21.40 6.47 31.58 4.17
10 11 1.340248 TCTCGGCGAATATTCTCCACC 59.660 52.381 21.40 12.50 31.58 4.61
11 12 2.795175 TCTCGGCGAATATTCTCCAC 57.205 50.000 21.40 5.87 31.58 4.02
12 13 2.890945 TCATCTCGGCGAATATTCTCCA 59.109 45.455 21.40 9.83 31.58 3.86
13 14 3.577649 TCATCTCGGCGAATATTCTCC 57.422 47.619 12.13 13.55 0.00 3.71
14 15 4.551388 ACTTCATCTCGGCGAATATTCTC 58.449 43.478 12.13 5.39 0.00 2.87
15 16 4.592485 ACTTCATCTCGGCGAATATTCT 57.408 40.909 12.13 0.00 0.00 2.40
16 17 5.006746 ACAAACTTCATCTCGGCGAATATTC 59.993 40.000 12.13 5.30 0.00 1.75
17 18 4.876107 ACAAACTTCATCTCGGCGAATATT 59.124 37.500 12.13 0.00 0.00 1.28
18 19 4.442706 ACAAACTTCATCTCGGCGAATAT 58.557 39.130 12.13 4.68 0.00 1.28
19 20 3.857052 ACAAACTTCATCTCGGCGAATA 58.143 40.909 12.13 1.96 0.00 1.75
20 21 2.699954 ACAAACTTCATCTCGGCGAAT 58.300 42.857 12.13 4.88 0.00 3.34
21 22 2.163818 ACAAACTTCATCTCGGCGAA 57.836 45.000 12.13 2.34 0.00 4.70
22 23 2.163818 AACAAACTTCATCTCGGCGA 57.836 45.000 10.14 10.14 0.00 5.54
23 24 3.250744 TCTAACAAACTTCATCTCGGCG 58.749 45.455 0.00 0.00 0.00 6.46
24 25 5.803020 ATTCTAACAAACTTCATCTCGGC 57.197 39.130 0.00 0.00 0.00 5.54
25 26 7.017645 CACAATTCTAACAAACTTCATCTCGG 58.982 38.462 0.00 0.00 0.00 4.63
26 27 7.576236 ACACAATTCTAACAAACTTCATCTCG 58.424 34.615 0.00 0.00 0.00 4.04
27 28 7.742089 CGACACAATTCTAACAAACTTCATCTC 59.258 37.037 0.00 0.00 0.00 2.75
28 29 7.441157 TCGACACAATTCTAACAAACTTCATCT 59.559 33.333 0.00 0.00 0.00 2.90
29 30 7.572759 TCGACACAATTCTAACAAACTTCATC 58.427 34.615 0.00 0.00 0.00 2.92
30 31 7.490962 TCGACACAATTCTAACAAACTTCAT 57.509 32.000 0.00 0.00 0.00 2.57
31 32 6.912203 TCGACACAATTCTAACAAACTTCA 57.088 33.333 0.00 0.00 0.00 3.02
45 46 9.391006 ACCTTGTACAAATATATTCGACACAAT 57.609 29.630 10.03 0.00 0.00 2.71
46 47 8.780846 ACCTTGTACAAATATATTCGACACAA 57.219 30.769 10.03 6.57 0.00 3.33
47 48 9.524106 CTACCTTGTACAAATATATTCGACACA 57.476 33.333 10.03 0.00 0.00 3.72
48 49 8.975439 CCTACCTTGTACAAATATATTCGACAC 58.025 37.037 10.03 0.00 0.00 3.67
49 50 8.698210 ACCTACCTTGTACAAATATATTCGACA 58.302 33.333 10.03 1.24 0.00 4.35
57 58 9.444600 CAACTGTTACCTACCTTGTACAAATAT 57.555 33.333 10.03 0.68 0.00 1.28
58 59 7.879160 CCAACTGTTACCTACCTTGTACAAATA 59.121 37.037 10.03 4.60 0.00 1.40
59 60 6.713450 CCAACTGTTACCTACCTTGTACAAAT 59.287 38.462 10.03 3.59 0.00 2.32
60 61 6.056884 CCAACTGTTACCTACCTTGTACAAA 58.943 40.000 10.03 0.00 0.00 2.83
61 62 5.366186 TCCAACTGTTACCTACCTTGTACAA 59.634 40.000 8.28 8.28 0.00 2.41
62 63 4.900652 TCCAACTGTTACCTACCTTGTACA 59.099 41.667 0.00 0.00 0.00 2.90
63 64 5.011431 AGTCCAACTGTTACCTACCTTGTAC 59.989 44.000 0.00 0.00 0.00 2.90
64 65 5.149976 AGTCCAACTGTTACCTACCTTGTA 58.850 41.667 0.00 0.00 0.00 2.41
65 66 3.971971 AGTCCAACTGTTACCTACCTTGT 59.028 43.478 0.00 0.00 0.00 3.16
66 67 4.618920 AGTCCAACTGTTACCTACCTTG 57.381 45.455 0.00 0.00 0.00 3.61
67 68 4.202430 CCAAGTCCAACTGTTACCTACCTT 60.202 45.833 0.00 0.00 0.00 3.50
68 69 3.326880 CCAAGTCCAACTGTTACCTACCT 59.673 47.826 0.00 0.00 0.00 3.08
69 70 3.325716 TCCAAGTCCAACTGTTACCTACC 59.674 47.826 0.00 0.00 0.00 3.18
70 71 4.040095 ACTCCAAGTCCAACTGTTACCTAC 59.960 45.833 0.00 0.00 0.00 3.18
71 72 4.228824 ACTCCAAGTCCAACTGTTACCTA 58.771 43.478 0.00 0.00 0.00 3.08
72 73 3.046374 ACTCCAAGTCCAACTGTTACCT 58.954 45.455 0.00 0.00 0.00 3.08
73 74 3.400255 GACTCCAAGTCCAACTGTTACC 58.600 50.000 0.00 0.00 39.28 2.85
74 75 3.057734 CGACTCCAAGTCCAACTGTTAC 58.942 50.000 1.69 0.00 42.12 2.50
75 76 2.696707 ACGACTCCAAGTCCAACTGTTA 59.303 45.455 1.69 0.00 42.12 2.41
76 77 1.485066 ACGACTCCAAGTCCAACTGTT 59.515 47.619 1.69 0.00 42.12 3.16
77 78 1.120530 ACGACTCCAAGTCCAACTGT 58.879 50.000 1.69 0.00 42.12 3.55
78 79 2.035449 TGTACGACTCCAAGTCCAACTG 59.965 50.000 1.69 0.00 42.12 3.16
79 80 2.296471 CTGTACGACTCCAAGTCCAACT 59.704 50.000 1.69 0.00 42.12 3.16
80 81 2.035576 ACTGTACGACTCCAAGTCCAAC 59.964 50.000 1.69 1.58 42.12 3.77
81 82 2.035449 CACTGTACGACTCCAAGTCCAA 59.965 50.000 1.69 0.00 42.12 3.53
82 83 1.611977 CACTGTACGACTCCAAGTCCA 59.388 52.381 1.69 0.00 42.12 4.02
83 84 1.612463 ACACTGTACGACTCCAAGTCC 59.388 52.381 1.69 0.00 42.12 3.85
84 85 4.698583 ATACACTGTACGACTCCAAGTC 57.301 45.455 0.00 0.00 41.71 3.01
85 86 5.353678 GTCTATACACTGTACGACTCCAAGT 59.646 44.000 10.91 0.00 0.00 3.16
86 87 5.353400 TGTCTATACACTGTACGACTCCAAG 59.647 44.000 15.93 0.00 0.00 3.61
87 88 5.247862 TGTCTATACACTGTACGACTCCAA 58.752 41.667 15.93 0.99 0.00 3.53
88 89 4.835678 TGTCTATACACTGTACGACTCCA 58.164 43.478 15.93 1.29 0.00 3.86
89 90 4.272991 CCTGTCTATACACTGTACGACTCC 59.727 50.000 15.93 0.00 0.00 3.85
90 91 4.272991 CCCTGTCTATACACTGTACGACTC 59.727 50.000 15.93 0.49 0.00 3.36
91 92 4.197750 CCCTGTCTATACACTGTACGACT 58.802 47.826 15.93 0.00 0.00 4.18
92 93 3.944015 ACCCTGTCTATACACTGTACGAC 59.056 47.826 11.14 11.14 0.00 4.34
93 94 4.226427 ACCCTGTCTATACACTGTACGA 57.774 45.455 0.00 0.00 0.00 3.43
94 95 5.761726 TCATACCCTGTCTATACACTGTACG 59.238 44.000 0.00 0.00 0.00 3.67
95 96 7.230913 ACATCATACCCTGTCTATACACTGTAC 59.769 40.741 0.00 0.00 0.00 2.90
96 97 7.295340 ACATCATACCCTGTCTATACACTGTA 58.705 38.462 0.00 0.00 0.00 2.74
97 98 6.136857 ACATCATACCCTGTCTATACACTGT 58.863 40.000 0.00 0.00 0.00 3.55
98 99 6.656632 ACATCATACCCTGTCTATACACTG 57.343 41.667 0.00 0.00 0.00 3.66
99 100 8.807118 CAATACATCATACCCTGTCTATACACT 58.193 37.037 0.00 0.00 0.00 3.55
100 101 8.585881 ACAATACATCATACCCTGTCTATACAC 58.414 37.037 0.00 0.00 0.00 2.90
101 102 8.721133 ACAATACATCATACCCTGTCTATACA 57.279 34.615 0.00 0.00 0.00 2.29
102 103 9.640963 GAACAATACATCATACCCTGTCTATAC 57.359 37.037 0.00 0.00 0.00 1.47
103 104 9.601810 AGAACAATACATCATACCCTGTCTATA 57.398 33.333 0.00 0.00 0.00 1.31
104 105 8.497910 AGAACAATACATCATACCCTGTCTAT 57.502 34.615 0.00 0.00 0.00 1.98
105 106 7.914427 AGAACAATACATCATACCCTGTCTA 57.086 36.000 0.00 0.00 0.00 2.59
106 107 6.814954 AGAACAATACATCATACCCTGTCT 57.185 37.500 0.00 0.00 0.00 3.41
109 110 9.658799 CCTAATAGAACAATACATCATACCCTG 57.341 37.037 0.00 0.00 0.00 4.45
110 111 9.615660 TCCTAATAGAACAATACATCATACCCT 57.384 33.333 0.00 0.00 0.00 4.34
111 112 9.654663 GTCCTAATAGAACAATACATCATACCC 57.345 37.037 0.00 0.00 0.00 3.69
116 117 9.599866 CAAGTGTCCTAATAGAACAATACATCA 57.400 33.333 0.00 0.00 0.00 3.07
117 118 9.601217 ACAAGTGTCCTAATAGAACAATACATC 57.399 33.333 0.00 0.00 0.00 3.06
146 147 9.346515 ACCCCTGCATTATATAAGAGGTTTATA 57.653 33.333 13.26 0.00 0.00 0.98
147 148 8.232098 ACCCCTGCATTATATAAGAGGTTTAT 57.768 34.615 13.26 0.00 0.00 1.40
148 149 7.642094 ACCCCTGCATTATATAAGAGGTTTA 57.358 36.000 13.26 0.00 0.00 2.01
149 150 6.530601 ACCCCTGCATTATATAAGAGGTTT 57.469 37.500 13.26 2.34 0.00 3.27
150 151 7.023120 TCTACCCCTGCATTATATAAGAGGTT 58.977 38.462 13.26 6.18 0.00 3.50
151 152 6.440965 GTCTACCCCTGCATTATATAAGAGGT 59.559 42.308 13.26 9.79 0.00 3.85
152 153 6.440647 TGTCTACCCCTGCATTATATAAGAGG 59.559 42.308 1.02 6.24 0.00 3.69
153 154 7.482169 TGTCTACCCCTGCATTATATAAGAG 57.518 40.000 1.02 0.00 0.00 2.85
154 155 7.865530 TTGTCTACCCCTGCATTATATAAGA 57.134 36.000 1.02 0.00 0.00 2.10
155 156 8.321353 TCATTGTCTACCCCTGCATTATATAAG 58.679 37.037 1.02 0.00 0.00 1.73
156 157 8.213489 TCATTGTCTACCCCTGCATTATATAA 57.787 34.615 0.00 0.00 0.00 0.98
157 158 7.806680 TCATTGTCTACCCCTGCATTATATA 57.193 36.000 0.00 0.00 0.00 0.86
158 159 6.702449 TCATTGTCTACCCCTGCATTATAT 57.298 37.500 0.00 0.00 0.00 0.86
159 160 6.044287 ACATCATTGTCTACCCCTGCATTATA 59.956 38.462 0.00 0.00 0.00 0.98
160 161 5.163055 ACATCATTGTCTACCCCTGCATTAT 60.163 40.000 0.00 0.00 0.00 1.28
161 162 4.165950 ACATCATTGTCTACCCCTGCATTA 59.834 41.667 0.00 0.00 0.00 1.90
162 163 3.053395 ACATCATTGTCTACCCCTGCATT 60.053 43.478 0.00 0.00 0.00 3.56
163 164 2.511218 ACATCATTGTCTACCCCTGCAT 59.489 45.455 0.00 0.00 0.00 3.96
164 165 1.915489 ACATCATTGTCTACCCCTGCA 59.085 47.619 0.00 0.00 0.00 4.41
165 166 2.717639 ACATCATTGTCTACCCCTGC 57.282 50.000 0.00 0.00 0.00 4.85
166 167 5.097742 TGTTACATCATTGTCTACCCCTG 57.902 43.478 0.00 0.00 37.28 4.45
167 168 5.975988 ATGTTACATCATTGTCTACCCCT 57.024 39.130 0.00 0.00 37.28 4.79
168 169 6.149474 GCATATGTTACATCATTGTCTACCCC 59.851 42.308 0.00 0.00 37.28 4.95
169 170 6.149474 GGCATATGTTACATCATTGTCTACCC 59.851 42.308 0.00 0.00 37.28 3.69
170 171 6.710295 TGGCATATGTTACATCATTGTCTACC 59.290 38.462 0.00 0.00 37.28 3.18
171 172 7.728847 TGGCATATGTTACATCATTGTCTAC 57.271 36.000 0.00 0.00 37.28 2.59
172 173 7.772757 TGTTGGCATATGTTACATCATTGTCTA 59.227 33.333 0.00 0.00 37.28 2.59
173 174 6.602803 TGTTGGCATATGTTACATCATTGTCT 59.397 34.615 0.00 0.00 37.28 3.41
174 175 6.794374 TGTTGGCATATGTTACATCATTGTC 58.206 36.000 0.00 1.04 37.28 3.18
175 176 6.772360 TGTTGGCATATGTTACATCATTGT 57.228 33.333 0.00 0.00 39.98 2.71
176 177 9.917129 ATTATGTTGGCATATGTTACATCATTG 57.083 29.630 17.10 0.00 37.42 2.82
179 180 8.729756 GCTATTATGTTGGCATATGTTACATCA 58.270 33.333 17.10 13.03 37.42 3.07
180 181 8.729756 TGCTATTATGTTGGCATATGTTACATC 58.270 33.333 17.10 9.21 37.42 3.06
181 182 8.634335 TGCTATTATGTTGGCATATGTTACAT 57.366 30.769 17.49 17.49 37.42 2.29
182 183 8.634335 ATGCTATTATGTTGGCATATGTTACA 57.366 30.769 4.29 6.83 42.55 2.41
184 185 9.394767 CCTATGCTATTATGTTGGCATATGTTA 57.605 33.333 4.29 0.00 43.59 2.41
185 186 7.148018 GCCTATGCTATTATGTTGGCATATGTT 60.148 37.037 4.29 0.00 43.59 2.71
186 187 6.319658 GCCTATGCTATTATGTTGGCATATGT 59.680 38.462 4.29 0.00 43.59 2.29
187 188 6.732154 GCCTATGCTATTATGTTGGCATATG 58.268 40.000 0.00 0.00 43.59 1.78
188 189 6.949352 GCCTATGCTATTATGTTGGCATAT 57.051 37.500 6.89 0.00 43.59 1.78
204 205 1.527844 CTCCCCTGCAAGCCTATGC 60.528 63.158 0.10 0.10 46.58 3.14
205 206 1.527844 GCTCCCCTGCAAGCCTATG 60.528 63.158 0.00 0.00 32.22 2.23
206 207 2.922234 GCTCCCCTGCAAGCCTAT 59.078 61.111 0.00 0.00 32.22 2.57
239 240 2.666098 ATACCAGTCACCCGGGCAC 61.666 63.158 24.08 18.41 0.00 5.01
240 241 2.285069 ATACCAGTCACCCGGGCA 60.285 61.111 24.08 3.91 0.00 5.36
241 242 2.189521 CATACCAGTCACCCGGGC 59.810 66.667 24.08 3.92 0.00 6.13
242 243 2.189521 GCATACCAGTCACCCGGG 59.810 66.667 22.25 22.25 0.00 5.73
243 244 2.028125 ATCGCATACCAGTCACCCGG 62.028 60.000 0.00 0.00 0.00 5.73
244 245 0.671796 TATCGCATACCAGTCACCCG 59.328 55.000 0.00 0.00 0.00 5.28
245 246 3.067106 CAATATCGCATACCAGTCACCC 58.933 50.000 0.00 0.00 0.00 4.61
246 247 3.494626 CACAATATCGCATACCAGTCACC 59.505 47.826 0.00 0.00 0.00 4.02
247 248 4.368315 TCACAATATCGCATACCAGTCAC 58.632 43.478 0.00 0.00 0.00 3.67
248 249 4.664150 TCACAATATCGCATACCAGTCA 57.336 40.909 0.00 0.00 0.00 3.41
249 250 4.389992 CCATCACAATATCGCATACCAGTC 59.610 45.833 0.00 0.00 0.00 3.51
250 251 4.202357 ACCATCACAATATCGCATACCAGT 60.202 41.667 0.00 0.00 0.00 4.00
251 252 4.152938 CACCATCACAATATCGCATACCAG 59.847 45.833 0.00 0.00 0.00 4.00
252 253 4.064388 CACCATCACAATATCGCATACCA 58.936 43.478 0.00 0.00 0.00 3.25
253 254 4.065088 ACACCATCACAATATCGCATACC 58.935 43.478 0.00 0.00 0.00 2.73
254 255 4.749598 TGACACCATCACAATATCGCATAC 59.250 41.667 0.00 0.00 29.99 2.39
255 256 4.954875 TGACACCATCACAATATCGCATA 58.045 39.130 0.00 0.00 29.99 3.14
256 257 3.807553 TGACACCATCACAATATCGCAT 58.192 40.909 0.00 0.00 29.99 4.73
257 258 3.258971 TGACACCATCACAATATCGCA 57.741 42.857 0.00 0.00 29.99 5.10
267 268 0.834261 TCCTTCCCGTGACACCATCA 60.834 55.000 0.00 0.00 33.79 3.07
268 269 0.108138 CTCCTTCCCGTGACACCATC 60.108 60.000 0.00 0.00 0.00 3.51
269 270 1.983224 CTCCTTCCCGTGACACCAT 59.017 57.895 0.00 0.00 0.00 3.55
270 271 2.879233 GCTCCTTCCCGTGACACCA 61.879 63.158 0.00 0.00 0.00 4.17
271 272 2.047179 GCTCCTTCCCGTGACACC 60.047 66.667 0.00 0.00 0.00 4.16
272 273 0.741221 GATGCTCCTTCCCGTGACAC 60.741 60.000 0.00 0.00 0.00 3.67
273 274 0.904865 AGATGCTCCTTCCCGTGACA 60.905 55.000 0.00 0.00 0.00 3.58
274 275 0.460987 CAGATGCTCCTTCCCGTGAC 60.461 60.000 0.00 0.00 0.00 3.67
275 276 0.904865 ACAGATGCTCCTTCCCGTGA 60.905 55.000 0.00 0.00 0.00 4.35
276 277 0.824109 TACAGATGCTCCTTCCCGTG 59.176 55.000 0.00 0.00 0.00 4.94
277 278 1.115467 CTACAGATGCTCCTTCCCGT 58.885 55.000 0.00 0.00 0.00 5.28
278 279 1.067821 GACTACAGATGCTCCTTCCCG 59.932 57.143 0.00 0.00 0.00 5.14
279 280 2.102252 CTGACTACAGATGCTCCTTCCC 59.898 54.545 0.00 0.00 46.03 3.97
280 281 2.102252 CCTGACTACAGATGCTCCTTCC 59.898 54.545 0.00 0.00 46.03 3.46
281 282 2.482839 GCCTGACTACAGATGCTCCTTC 60.483 54.545 0.00 0.00 46.03 3.46
282 283 1.484240 GCCTGACTACAGATGCTCCTT 59.516 52.381 0.00 0.00 46.03 3.36
283 284 1.118838 GCCTGACTACAGATGCTCCT 58.881 55.000 0.00 0.00 46.03 3.69
284 285 0.105778 GGCCTGACTACAGATGCTCC 59.894 60.000 0.00 0.00 46.03 4.70
285 286 0.105778 GGGCCTGACTACAGATGCTC 59.894 60.000 0.84 0.00 46.03 4.26
286 287 0.326048 AGGGCCTGACTACAGATGCT 60.326 55.000 4.50 0.00 46.03 3.79
287 288 0.105778 GAGGGCCTGACTACAGATGC 59.894 60.000 12.95 0.00 46.03 3.91
288 289 0.387202 CGAGGGCCTGACTACAGATG 59.613 60.000 12.95 0.00 46.03 2.90
289 290 0.259065 TCGAGGGCCTGACTACAGAT 59.741 55.000 12.95 0.00 46.03 2.90
290 291 0.394488 CTCGAGGGCCTGACTACAGA 60.394 60.000 12.95 0.00 46.03 3.41
291 292 0.394488 TCTCGAGGGCCTGACTACAG 60.394 60.000 12.95 0.00 43.12 2.74
292 293 0.259065 ATCTCGAGGGCCTGACTACA 59.741 55.000 12.95 0.00 0.00 2.74
293 294 0.671251 CATCTCGAGGGCCTGACTAC 59.329 60.000 12.95 0.00 0.00 2.73
294 295 0.259065 ACATCTCGAGGGCCTGACTA 59.741 55.000 12.95 0.00 0.00 2.59
295 296 0.259065 TACATCTCGAGGGCCTGACT 59.741 55.000 12.95 0.00 0.00 3.41
296 297 0.671251 CTACATCTCGAGGGCCTGAC 59.329 60.000 12.95 0.00 0.00 3.51
297 298 1.109920 GCTACATCTCGAGGGCCTGA 61.110 60.000 12.95 8.24 0.00 3.86
298 299 1.365633 GCTACATCTCGAGGGCCTG 59.634 63.158 12.95 3.26 0.00 4.85
299 300 1.834822 GGCTACATCTCGAGGGCCT 60.835 63.158 5.25 5.25 36.96 5.19
300 301 1.476007 ATGGCTACATCTCGAGGGCC 61.476 60.000 13.56 17.35 39.93 5.80
301 302 1.257743 TATGGCTACATCTCGAGGGC 58.742 55.000 13.56 8.89 38.53 5.19
302 303 3.791973 GATATGGCTACATCTCGAGGG 57.208 52.381 13.56 8.03 38.53 4.30
307 308 5.105554 AGGTTCATCGATATGGCTACATCTC 60.106 44.000 0.00 0.00 38.53 2.75
308 309 4.774726 AGGTTCATCGATATGGCTACATCT 59.225 41.667 0.00 0.00 38.53 2.90
309 310 5.078411 AGGTTCATCGATATGGCTACATC 57.922 43.478 0.00 0.00 38.53 3.06
310 311 4.528206 TGAGGTTCATCGATATGGCTACAT 59.472 41.667 0.00 0.00 41.13 2.29
311 312 3.895041 TGAGGTTCATCGATATGGCTACA 59.105 43.478 0.00 0.00 33.61 2.74
312 313 4.521130 TGAGGTTCATCGATATGGCTAC 57.479 45.455 0.00 0.00 33.61 3.58
313 314 5.745312 AATGAGGTTCATCGATATGGCTA 57.255 39.130 0.00 0.00 35.76 3.93
314 315 4.630644 AATGAGGTTCATCGATATGGCT 57.369 40.909 0.00 0.00 35.76 4.75
315 316 5.700832 TGTTAATGAGGTTCATCGATATGGC 59.299 40.000 0.00 0.00 35.76 4.40
316 317 7.728847 TTGTTAATGAGGTTCATCGATATGG 57.271 36.000 0.00 0.00 35.76 2.74
317 318 9.817365 GATTTGTTAATGAGGTTCATCGATATG 57.183 33.333 0.00 0.00 35.76 1.78
318 319 9.784531 AGATTTGTTAATGAGGTTCATCGATAT 57.215 29.630 0.00 0.00 35.76 1.63
319 320 9.261180 GAGATTTGTTAATGAGGTTCATCGATA 57.739 33.333 0.00 0.00 35.76 2.92
320 321 7.042456 CGAGATTTGTTAATGAGGTTCATCGAT 60.042 37.037 0.00 0.00 35.76 3.59
321 322 6.255670 CGAGATTTGTTAATGAGGTTCATCGA 59.744 38.462 0.00 0.00 35.76 3.59
322 323 6.414079 CGAGATTTGTTAATGAGGTTCATCG 58.586 40.000 0.00 0.00 35.76 3.84
323 324 6.316390 ACCGAGATTTGTTAATGAGGTTCATC 59.684 38.462 0.00 0.00 35.76 2.92
324 325 6.180472 ACCGAGATTTGTTAATGAGGTTCAT 58.820 36.000 0.00 0.00 39.09 2.57
325 326 5.556915 ACCGAGATTTGTTAATGAGGTTCA 58.443 37.500 0.00 0.00 0.00 3.18
326 327 7.306632 CGATACCGAGATTTGTTAATGAGGTTC 60.307 40.741 0.00 0.00 38.22 3.62
327 328 6.479001 CGATACCGAGATTTGTTAATGAGGTT 59.521 38.462 0.00 0.00 38.22 3.50
328 329 5.983720 CGATACCGAGATTTGTTAATGAGGT 59.016 40.000 0.00 0.00 38.22 3.85
329 330 5.983720 ACGATACCGAGATTTGTTAATGAGG 59.016 40.000 0.00 0.00 39.50 3.86
330 331 6.475727 ACACGATACCGAGATTTGTTAATGAG 59.524 38.462 0.00 0.00 39.50 2.90
331 332 6.334989 ACACGATACCGAGATTTGTTAATGA 58.665 36.000 0.00 0.00 39.50 2.57
332 333 6.475727 AGACACGATACCGAGATTTGTTAATG 59.524 38.462 0.00 0.00 39.50 1.90
333 334 6.570692 AGACACGATACCGAGATTTGTTAAT 58.429 36.000 0.00 0.00 39.50 1.40
334 335 5.957798 AGACACGATACCGAGATTTGTTAA 58.042 37.500 0.00 0.00 39.50 2.01
335 336 5.571784 AGACACGATACCGAGATTTGTTA 57.428 39.130 0.00 0.00 39.50 2.41
336 337 4.451629 AGACACGATACCGAGATTTGTT 57.548 40.909 0.00 0.00 39.50 2.83
337 338 4.174009 CAAGACACGATACCGAGATTTGT 58.826 43.478 0.00 0.00 39.50 2.83
338 339 4.031765 CACAAGACACGATACCGAGATTTG 59.968 45.833 0.00 0.00 39.50 2.32
339 340 4.174009 CACAAGACACGATACCGAGATTT 58.826 43.478 0.00 0.00 39.50 2.17
340 341 3.770666 CACAAGACACGATACCGAGATT 58.229 45.455 0.00 0.00 39.50 2.40
341 342 2.479730 GCACAAGACACGATACCGAGAT 60.480 50.000 0.00 0.00 39.50 2.75
342 343 1.135489 GCACAAGACACGATACCGAGA 60.135 52.381 0.00 0.00 39.50 4.04
343 344 1.135373 AGCACAAGACACGATACCGAG 60.135 52.381 0.00 0.00 39.50 4.63
344 345 0.885879 AGCACAAGACACGATACCGA 59.114 50.000 0.00 0.00 39.50 4.69
345 346 2.182825 GTAGCACAAGACACGATACCG 58.817 52.381 0.00 0.00 42.50 4.02
346 347 2.182825 CGTAGCACAAGACACGATACC 58.817 52.381 0.00 0.00 36.53 2.73
525 535 5.239306 TGTTTGGTTAATTGACTCTGCTCTG 59.761 40.000 0.00 0.00 0.00 3.35
526 536 5.239525 GTGTTTGGTTAATTGACTCTGCTCT 59.760 40.000 0.00 0.00 0.00 4.09
527 537 5.008613 TGTGTTTGGTTAATTGACTCTGCTC 59.991 40.000 0.00 0.00 0.00 4.26
528 538 4.887071 TGTGTTTGGTTAATTGACTCTGCT 59.113 37.500 0.00 0.00 0.00 4.24
529 539 5.181690 TGTGTTTGGTTAATTGACTCTGC 57.818 39.130 0.00 0.00 0.00 4.26
530 540 5.630680 GCATGTGTTTGGTTAATTGACTCTG 59.369 40.000 0.00 0.00 0.00 3.35
531 541 5.301551 TGCATGTGTTTGGTTAATTGACTCT 59.698 36.000 0.00 0.00 0.00 3.24
553 563 4.477975 CGAGACCCGGTCGAGTGC 62.478 72.222 12.04 0.46 39.92 4.40
573 583 1.891178 CGCACGAGAGATAACGTCAA 58.109 50.000 0.00 0.00 40.76 3.18
578 588 1.709203 CATACGCGCACGAGAGATAAC 59.291 52.381 5.73 0.00 43.93 1.89
579 589 1.334689 CCATACGCGCACGAGAGATAA 60.335 52.381 5.73 0.00 43.93 1.75
580 590 0.237498 CCATACGCGCACGAGAGATA 59.763 55.000 5.73 0.00 43.93 1.98
581 591 1.008424 CCATACGCGCACGAGAGAT 60.008 57.895 5.73 0.00 43.93 2.75
582 592 2.404186 ACCATACGCGCACGAGAGA 61.404 57.895 5.73 0.00 43.93 3.10
583 593 2.102357 ACCATACGCGCACGAGAG 59.898 61.111 5.73 0.00 43.93 3.20
584 594 2.202557 CACCATACGCGCACGAGA 60.203 61.111 5.73 0.00 43.93 4.04
585 595 0.799152 TAACACCATACGCGCACGAG 60.799 55.000 5.73 0.00 43.93 4.18
586 596 0.388263 TTAACACCATACGCGCACGA 60.388 50.000 5.73 0.00 43.93 4.35
588 598 1.194997 TGTTTAACACCATACGCGCAC 59.805 47.619 5.73 0.00 0.00 5.34
589 599 1.509703 TGTTTAACACCATACGCGCA 58.490 45.000 5.73 0.00 0.00 6.09
590 600 2.598000 TTGTTTAACACCATACGCGC 57.402 45.000 5.73 0.00 0.00 6.86
591 601 3.299542 GCAATTGTTTAACACCATACGCG 59.700 43.478 3.53 3.53 0.00 6.01
592 602 4.230657 TGCAATTGTTTAACACCATACGC 58.769 39.130 7.40 0.00 0.00 4.42
593 603 5.344665 CCTTGCAATTGTTTAACACCATACG 59.655 40.000 7.40 0.00 0.00 3.06
594 604 5.637387 CCCTTGCAATTGTTTAACACCATAC 59.363 40.000 7.40 0.00 0.00 2.39
595 605 5.279708 CCCCTTGCAATTGTTTAACACCATA 60.280 40.000 7.40 0.00 0.00 2.74
596 606 4.504689 CCCCTTGCAATTGTTTAACACCAT 60.505 41.667 7.40 0.00 0.00 3.55
597 607 3.181461 CCCCTTGCAATTGTTTAACACCA 60.181 43.478 7.40 0.00 0.00 4.17
598 608 3.181459 ACCCCTTGCAATTGTTTAACACC 60.181 43.478 7.40 0.00 0.00 4.16
599 609 3.807071 CACCCCTTGCAATTGTTTAACAC 59.193 43.478 7.40 0.00 0.00 3.32
600 610 3.452627 ACACCCCTTGCAATTGTTTAACA 59.547 39.130 7.40 0.00 0.00 2.41
601 611 4.066646 ACACCCCTTGCAATTGTTTAAC 57.933 40.909 7.40 0.00 0.00 2.01
602 612 4.762289 AACACCCCTTGCAATTGTTTAA 57.238 36.364 7.40 0.00 0.00 1.52
603 613 5.777732 AGATAACACCCCTTGCAATTGTTTA 59.222 36.000 16.38 9.10 32.73 2.01
604 614 4.592778 AGATAACACCCCTTGCAATTGTTT 59.407 37.500 16.38 8.39 32.73 2.83
605 615 4.159557 AGATAACACCCCTTGCAATTGTT 58.840 39.130 7.40 15.78 34.79 2.83
606 616 3.763897 GAGATAACACCCCTTGCAATTGT 59.236 43.478 7.40 0.00 0.00 2.71
607 617 3.181497 CGAGATAACACCCCTTGCAATTG 60.181 47.826 0.00 0.00 0.00 2.32
608 618 3.016736 CGAGATAACACCCCTTGCAATT 58.983 45.455 0.00 0.00 0.00 2.32
609 619 2.026262 ACGAGATAACACCCCTTGCAAT 60.026 45.455 0.00 0.00 0.00 3.56
610 620 1.349688 ACGAGATAACACCCCTTGCAA 59.650 47.619 0.00 0.00 0.00 4.08
611 621 0.981183 ACGAGATAACACCCCTTGCA 59.019 50.000 0.00 0.00 0.00 4.08
612 622 1.369625 CACGAGATAACACCCCTTGC 58.630 55.000 0.00 0.00 0.00 4.01
613 623 1.369625 GCACGAGATAACACCCCTTG 58.630 55.000 0.00 0.00 0.00 3.61
614 624 0.108329 CGCACGAGATAACACCCCTT 60.108 55.000 0.00 0.00 0.00 3.95
615 625 1.515954 CGCACGAGATAACACCCCT 59.484 57.895 0.00 0.00 0.00 4.79
616 626 2.171725 GCGCACGAGATAACACCCC 61.172 63.158 0.30 0.00 0.00 4.95
617 627 2.514013 CGCGCACGAGATAACACCC 61.514 63.158 8.75 0.00 43.93 4.61
618 628 0.523968 TACGCGCACGAGATAACACC 60.524 55.000 5.73 0.00 43.93 4.16
619 629 1.187271 CATACGCGCACGAGATAACAC 59.813 52.381 5.73 0.00 43.93 3.32
620 630 1.472990 CATACGCGCACGAGATAACA 58.527 50.000 5.73 0.00 43.93 2.41
670 680 1.505353 GACCCAGTCGAGTGGTACG 59.495 63.158 32.24 21.67 35.60 3.67
706 716 4.576463 ACATCGGCTTAATTCAGTCCAATC 59.424 41.667 0.00 0.00 0.00 2.67
720 730 3.245048 CGCAAAAAGAAAAACATCGGCTT 59.755 39.130 0.00 0.00 0.00 4.35
722 732 2.096958 CCGCAAAAAGAAAAACATCGGC 60.097 45.455 0.00 0.00 0.00 5.54
723 733 3.376540 TCCGCAAAAAGAAAAACATCGG 58.623 40.909 0.00 0.00 36.06 4.18
725 735 6.582437 TTTCTCCGCAAAAAGAAAAACATC 57.418 33.333 0.00 0.00 38.27 3.06
726 736 6.593770 ACTTTTCTCCGCAAAAAGAAAAACAT 59.406 30.769 16.89 0.00 45.72 2.71
727 737 5.929415 ACTTTTCTCCGCAAAAAGAAAAACA 59.071 32.000 16.89 0.00 45.72 2.83
728 738 6.403333 ACTTTTCTCCGCAAAAAGAAAAAC 57.597 33.333 16.89 0.00 45.72 2.43
729 739 5.287513 CGACTTTTCTCCGCAAAAAGAAAAA 59.712 36.000 16.89 0.00 45.72 1.94
730 740 4.796312 CGACTTTTCTCCGCAAAAAGAAAA 59.204 37.500 16.89 12.16 44.83 2.29
731 741 4.095185 TCGACTTTTCTCCGCAAAAAGAAA 59.905 37.500 16.89 6.65 43.32 2.52
732 742 3.623960 TCGACTTTTCTCCGCAAAAAGAA 59.376 39.130 16.89 1.60 43.32 2.52
733 743 3.199677 TCGACTTTTCTCCGCAAAAAGA 58.800 40.909 16.89 0.00 43.32 2.52
734 744 3.602390 TCGACTTTTCTCCGCAAAAAG 57.398 42.857 11.34 11.34 45.15 2.27
735 745 3.304391 CCATCGACTTTTCTCCGCAAAAA 60.304 43.478 0.00 0.00 0.00 1.94
736 746 2.225491 CCATCGACTTTTCTCCGCAAAA 59.775 45.455 0.00 0.00 0.00 2.44
737 747 1.804151 CCATCGACTTTTCTCCGCAAA 59.196 47.619 0.00 0.00 0.00 3.68
738 748 1.270625 ACCATCGACTTTTCTCCGCAA 60.271 47.619 0.00 0.00 0.00 4.85
739 749 0.320374 ACCATCGACTTTTCTCCGCA 59.680 50.000 0.00 0.00 0.00 5.69
740 750 1.439679 AACCATCGACTTTTCTCCGC 58.560 50.000 0.00 0.00 0.00 5.54
741 751 5.796350 AATTAACCATCGACTTTTCTCCG 57.204 39.130 0.00 0.00 0.00 4.63
777 787 3.692101 CCGCAATGGTTTAGTTATGTCCA 59.308 43.478 0.00 0.00 0.00 4.02
796 806 0.590195 CTGCTAATGATGCTTCCCGC 59.410 55.000 0.00 0.00 39.77 6.13
797 807 1.233019 CCTGCTAATGATGCTTCCCG 58.767 55.000 0.00 0.00 0.00 5.14
798 808 2.355010 ACCTGCTAATGATGCTTCCC 57.645 50.000 0.00 0.00 0.00 3.97
799 809 2.620585 GGAACCTGCTAATGATGCTTCC 59.379 50.000 0.00 0.00 0.00 3.46
800 810 3.065925 GTGGAACCTGCTAATGATGCTTC 59.934 47.826 0.00 0.00 0.00 3.86
801 811 3.019564 GTGGAACCTGCTAATGATGCTT 58.980 45.455 0.00 0.00 0.00 3.91
802 812 2.240667 AGTGGAACCTGCTAATGATGCT 59.759 45.455 0.00 0.00 37.80 3.79
803 813 2.648059 AGTGGAACCTGCTAATGATGC 58.352 47.619 0.00 0.00 37.80 3.91
804 814 5.028549 AGTAGTGGAACCTGCTAATGATG 57.971 43.478 0.00 0.00 37.80 3.07
805 815 4.202161 CGAGTAGTGGAACCTGCTAATGAT 60.202 45.833 0.00 0.00 37.80 2.45
806 816 3.130516 CGAGTAGTGGAACCTGCTAATGA 59.869 47.826 0.00 0.00 37.80 2.57
807 817 3.119101 ACGAGTAGTGGAACCTGCTAATG 60.119 47.826 0.00 0.00 37.80 1.90
808 818 3.097614 ACGAGTAGTGGAACCTGCTAAT 58.902 45.455 0.00 0.00 37.80 1.73
809 819 2.522185 ACGAGTAGTGGAACCTGCTAA 58.478 47.619 0.00 0.00 37.80 3.09
810 820 2.211250 ACGAGTAGTGGAACCTGCTA 57.789 50.000 0.00 0.00 37.80 3.49
811 821 2.211250 TACGAGTAGTGGAACCTGCT 57.789 50.000 0.00 0.00 37.80 4.24
812 822 2.991866 GTTTACGAGTAGTGGAACCTGC 59.008 50.000 0.00 0.00 37.80 4.85
813 823 4.516365 AGTTTACGAGTAGTGGAACCTG 57.484 45.455 0.00 0.00 37.80 4.00
814 824 5.320277 AGTAGTTTACGAGTAGTGGAACCT 58.680 41.667 0.00 0.00 37.80 3.50
815 825 5.635417 AGTAGTTTACGAGTAGTGGAACC 57.365 43.478 0.00 0.00 37.80 3.62
816 826 7.371126 AGTAGTAGTTTACGAGTAGTGGAAC 57.629 40.000 0.00 0.00 33.33 3.62
817 827 7.766278 CCTAGTAGTAGTTTACGAGTAGTGGAA 59.234 40.741 3.91 0.00 36.30 3.53
818 828 7.124298 TCCTAGTAGTAGTTTACGAGTAGTGGA 59.876 40.741 3.91 0.00 36.30 4.02
819 829 7.268586 TCCTAGTAGTAGTTTACGAGTAGTGG 58.731 42.308 3.91 0.00 36.30 4.00
820 830 7.978975 ACTCCTAGTAGTAGTTTACGAGTAGTG 59.021 40.741 10.16 5.76 36.30 2.74
821 831 8.073467 ACTCCTAGTAGTAGTTTACGAGTAGT 57.927 38.462 10.16 0.00 36.30 2.73
822 832 8.940768 AACTCCTAGTAGTAGTTTACGAGTAG 57.059 38.462 2.44 4.97 37.19 2.57
823 833 8.531982 TGAACTCCTAGTAGTAGTTTACGAGTA 58.468 37.037 9.28 0.00 33.72 2.59
824 834 7.390027 TGAACTCCTAGTAGTAGTTTACGAGT 58.610 38.462 9.28 5.90 33.72 4.18
825 835 7.840342 TGAACTCCTAGTAGTAGTTTACGAG 57.160 40.000 9.28 5.34 33.72 4.18
826 836 7.148340 GCTTGAACTCCTAGTAGTAGTTTACGA 60.148 40.741 9.28 0.00 33.72 3.43
827 837 6.966066 GCTTGAACTCCTAGTAGTAGTTTACG 59.034 42.308 9.28 4.93 33.72 3.18
832 842 4.264262 TGGGCTTGAACTCCTAGTAGTAGT 60.264 45.833 3.91 0.00 0.00 2.73
844 854 5.746065 GCACATATATAGGTGGGCTTGAACT 60.746 44.000 24.53 0.00 41.46 3.01
884 894 3.602390 TTGTTCTCTTGCTGCGTAAAC 57.398 42.857 0.00 0.00 0.00 2.01
889 899 1.783140 GCTTTTTGTTCTCTTGCTGCG 59.217 47.619 0.00 0.00 0.00 5.18
901 911 9.624289 CAAGTTGAGCTTGCTTTTGCTTTTTGT 62.624 37.037 0.00 0.00 46.68 2.83
902 912 7.372484 CAAGTTGAGCTTGCTTTTGCTTTTTG 61.372 38.462 0.00 0.00 46.68 2.44
907 917 2.817901 CAAGTTGAGCTTGCTTTTGCT 58.182 42.857 0.00 0.00 46.68 3.91
923 934 3.771577 AGCACAAGGTAGCTTACAAGT 57.228 42.857 6.90 0.00 38.01 3.16
935 946 4.184629 AGCTAGACGAATTAAGCACAAGG 58.815 43.478 0.00 0.00 37.44 3.61
980 991 1.817099 GGTCAATGCTCCGCTCTGG 60.817 63.158 0.00 0.00 40.09 3.86
981 992 0.674581 TTGGTCAATGCTCCGCTCTG 60.675 55.000 0.00 0.00 0.00 3.35
982 993 0.254178 ATTGGTCAATGCTCCGCTCT 59.746 50.000 0.00 0.00 0.00 4.09
983 994 0.379669 CATTGGTCAATGCTCCGCTC 59.620 55.000 10.26 0.00 41.27 5.03
984 995 1.033746 CCATTGGTCAATGCTCCGCT 61.034 55.000 15.93 0.00 45.06 5.52
985 996 1.434696 CCATTGGTCAATGCTCCGC 59.565 57.895 15.93 0.00 45.06 5.54
986 997 1.033746 AGCCATTGGTCAATGCTCCG 61.034 55.000 15.93 5.93 45.06 4.63
987 998 1.135721 GAAGCCATTGGTCAATGCTCC 59.864 52.381 15.93 8.08 45.06 4.70
988 999 1.820519 TGAAGCCATTGGTCAATGCTC 59.179 47.619 15.93 12.30 45.06 4.26
989 1000 1.547372 GTGAAGCCATTGGTCAATGCT 59.453 47.619 15.93 13.62 45.06 3.79
990 1001 1.273048 TGTGAAGCCATTGGTCAATGC 59.727 47.619 15.93 11.99 45.06 3.56
991 1002 2.669113 CGTGTGAAGCCATTGGTCAATG 60.669 50.000 14.76 14.76 45.77 2.82
992 1003 1.541147 CGTGTGAAGCCATTGGTCAAT 59.459 47.619 4.26 0.00 0.00 2.57
993 1004 0.950836 CGTGTGAAGCCATTGGTCAA 59.049 50.000 4.26 0.00 0.00 3.18
994 1005 0.179032 ACGTGTGAAGCCATTGGTCA 60.179 50.000 4.26 0.00 0.00 4.02
995 1006 0.951558 AACGTGTGAAGCCATTGGTC 59.048 50.000 4.26 0.00 0.00 4.02
996 1007 0.951558 GAACGTGTGAAGCCATTGGT 59.048 50.000 4.26 0.00 0.00 3.67
997 1008 0.950836 TGAACGTGTGAAGCCATTGG 59.049 50.000 0.00 0.00 0.00 3.16
1049 1060 2.135139 GAGAAATCATACGCATCGGCA 58.865 47.619 0.00 0.00 41.24 5.69
1059 1070 4.811498 TCCTAGTTCCCGGAGAAATCATA 58.189 43.478 0.73 0.00 35.85 2.15
1098 1109 5.515797 TGAACACTAATGATCCTAGACGG 57.484 43.478 6.06 0.00 0.00 4.79
1120 1131 9.240159 GTGGTCAAACTTTAACAAAAATACGAT 57.760 29.630 0.00 0.00 0.00 3.73
1131 1142 7.938563 TGCATTAATGTGGTCAAACTTTAAC 57.061 32.000 16.61 0.00 34.44 2.01
1278 1565 5.552371 ACCTCTGCCCTGATATACTAGTCTA 59.448 44.000 0.00 0.00 0.00 2.59
1288 1575 1.973515 CATGCTACCTCTGCCCTGATA 59.026 52.381 0.00 0.00 0.00 2.15
1295 1582 5.642063 TGTAACTAAAACATGCTACCTCTGC 59.358 40.000 0.00 0.00 0.00 4.26
1300 1587 8.712285 TCTGTATGTAACTAAAACATGCTACC 57.288 34.615 0.00 0.00 39.71 3.18
1337 1628 9.249457 GATCAGTTTGATTGATTACGACTCATA 57.751 33.333 0.00 0.00 37.20 2.15
1377 1672 1.276138 CTGTCCCTGTGAGCATACACA 59.724 52.381 10.08 10.08 46.45 3.72
1378 1673 1.406069 CCTGTCCCTGTGAGCATACAC 60.406 57.143 0.00 0.00 40.68 2.90
1429 1730 1.790623 CACGTACGTCCCTTTGACAAG 59.209 52.381 19.94 0.00 44.71 3.16
1430 1731 1.855513 CACGTACGTCCCTTTGACAA 58.144 50.000 19.94 0.00 44.71 3.18
1431 1732 0.598158 GCACGTACGTCCCTTTGACA 60.598 55.000 19.94 0.00 44.71 3.58
1443 1744 0.110509 TGTCGTTCTCGAGCACGTAC 60.111 55.000 31.10 26.21 46.96 3.67
1449 1750 0.729816 GTGTCCTGTCGTTCTCGAGC 60.730 60.000 7.81 0.00 46.96 5.03
1534 1835 3.106407 GCGGTCTGTGAGCACGTC 61.106 66.667 0.00 0.00 0.00 4.34
1535 1836 3.559657 GAGCGGTCTGTGAGCACGT 62.560 63.158 7.51 0.00 0.00 4.49
1554 1855 2.212652 TGATCACGCCTATGCATGAAC 58.787 47.619 10.16 0.00 43.74 3.18
1563 1864 4.051237 CGAAGATGAATTGATCACGCCTA 58.949 43.478 7.67 0.00 41.93 3.93
1566 1867 2.600792 GCCGAAGATGAATTGATCACGC 60.601 50.000 7.67 5.74 41.93 5.34
1569 1870 1.599071 GCGCCGAAGATGAATTGATCA 59.401 47.619 7.67 0.00 43.67 2.92
1572 1873 0.392327 TGGCGCCGAAGATGAATTGA 60.392 50.000 23.90 0.00 0.00 2.57
1575 1876 0.107456 AGATGGCGCCGAAGATGAAT 59.893 50.000 23.90 6.65 0.00 2.57
1593 1894 3.365265 GGGGCCACGTGCTCAAAG 61.365 66.667 10.91 0.00 44.86 2.77
1645 1946 2.125633 GGTTCCTCGGAAGGCGAC 60.126 66.667 0.00 0.00 43.02 5.19
1674 1975 3.645660 TCATGCACCGCCTTGGGA 61.646 61.111 0.00 0.00 44.64 4.37
1689 1990 1.328279 TGAAGTCGAGGCAGAAGTCA 58.672 50.000 0.00 0.00 0.00 3.41
1725 2026 3.793144 CGCTTTGAGTCGGGCAGC 61.793 66.667 0.00 0.00 0.00 5.25
1728 2029 3.793144 CAGCGCTTTGAGTCGGGC 61.793 66.667 7.50 0.00 39.12 6.13
2202 2667 0.746659 GGCCCGGAATTGAAATCAGG 59.253 55.000 0.73 0.00 32.65 3.86
2262 2729 0.679960 TGCACAGCGCCTAGAGTCTA 60.680 55.000 2.29 0.00 41.33 2.59
2502 2986 4.794248 TCATTCAAATAAGTGATCGCCG 57.206 40.909 1.76 0.00 0.00 6.46
2561 3071 3.691575 TCAGGTTGCCCGATAAAAATCA 58.308 40.909 0.00 0.00 35.12 2.57
2762 3313 5.453762 CCATAGCAGACATTACACCATCTGA 60.454 44.000 4.33 0.00 40.92 3.27
2852 3403 1.792949 GACCGTCACAAGCACAGTAAG 59.207 52.381 0.00 0.00 0.00 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.