Multiple sequence alignment - TraesCS3B01G445400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G445400 chr3B 100.000 3288 0 0 1 3288 685065654 685068941 0.000000e+00 6072.0
1 TraesCS3B01G445400 chr3B 86.701 1376 106 45 842 2184 684620860 684619529 0.000000e+00 1456.0
2 TraesCS3B01G445400 chr3B 91.324 438 32 4 1608 2039 661757601 661758038 7.860000e-166 593.0
3 TraesCS3B01G445400 chr3B 83.109 521 51 23 1720 2225 661568420 661568918 1.080000e-119 440.0
4 TraesCS3B01G445400 chr3B 93.361 241 15 1 1338 1578 661757377 661757616 4.040000e-94 355.0
5 TraesCS3B01G445400 chr3B 92.562 242 17 1 1337 1578 661785904 661786144 2.430000e-91 346.0
6 TraesCS3B01G445400 chr3B 95.946 74 1 2 2154 2225 661567116 661567189 5.760000e-23 119.0
7 TraesCS3B01G445400 chr3B 95.122 41 1 1 493 533 684620364 684620403 2.740000e-06 63.9
8 TraesCS3B01G445400 chr3B 90.000 50 4 1 493 542 685066974 685066926 2.740000e-06 63.9
9 TraesCS3B01G445400 chr3B 100.000 30 0 0 2532 2561 386178860 386178889 4.580000e-04 56.5
10 TraesCS3B01G445400 chr3D 88.267 1466 106 22 847 2269 519951239 519949797 0.000000e+00 1694.0
11 TraesCS3B01G445400 chr3D 86.734 1583 126 48 847 2384 520280649 520282192 0.000000e+00 1683.0
12 TraesCS3B01G445400 chr3D 89.308 1272 77 22 804 2023 520245358 520246622 0.000000e+00 1541.0
13 TraesCS3B01G445400 chr3D 83.667 949 87 42 1290 2225 500090704 500091597 0.000000e+00 832.0
14 TraesCS3B01G445400 chr3D 89.804 510 43 5 1536 2040 500019020 500019525 0.000000e+00 645.0
15 TraesCS3B01G445400 chr3D 91.453 351 23 4 143 493 520225171 520225514 2.970000e-130 475.0
16 TraesCS3B01G445400 chr3D 82.378 471 47 20 1735 2191 500127898 500128346 8.610000e-101 377.0
17 TraesCS3B01G445400 chr3D 83.571 420 47 16 85 494 591097556 591097963 1.110000e-99 374.0
18 TraesCS3B01G445400 chr3D 90.747 281 18 4 525 802 520225517 520225792 5.180000e-98 368.0
19 TraesCS3B01G445400 chr3D 91.083 157 14 0 2427 2583 520282205 520282361 2.570000e-51 213.0
20 TraesCS3B01G445400 chr3D 82.791 215 34 2 527 738 563271504 563271718 4.330000e-44 189.0
21 TraesCS3B01G445400 chr3D 91.791 134 8 1 1 134 520224834 520224964 2.020000e-42 183.0
22 TraesCS3B01G445400 chr3D 81.699 153 27 1 2409 2561 59919588 59919437 3.440000e-25 126.0
23 TraesCS3B01G445400 chr3D 92.683 41 2 1 493 533 519950736 519950775 1.270000e-04 58.4
24 TraesCS3B01G445400 chr3A 93.114 944 54 2 1112 2044 655668587 655669530 0.000000e+00 1373.0
25 TraesCS3B01G445400 chr3A 92.197 974 47 10 2318 3276 655669736 655670695 0.000000e+00 1351.0
26 TraesCS3B01G445400 chr3A 93.742 815 46 1 1235 2044 655786354 655787168 0.000000e+00 1218.0
27 TraesCS3B01G445400 chr3A 90.354 311 12 6 817 1112 655785569 655785876 3.080000e-105 392.0
28 TraesCS3B01G445400 chr3A 83.770 382 33 13 2195 2556 655787232 655787604 5.260000e-88 335.0
29 TraesCS3B01G445400 chr3A 87.395 238 25 4 880 1112 655668323 655668560 5.410000e-68 268.0
30 TraesCS3B01G445400 chr3A 84.733 262 30 7 2672 2930 655787947 655788201 1.510000e-63 254.0
31 TraesCS3B01G445400 chr3A 85.714 70 3 3 2122 2191 639554422 639554484 2.120000e-07 67.6
32 TraesCS3B01G445400 chr3A 85.714 70 3 3 2122 2191 639557669 639557731 2.120000e-07 67.6
33 TraesCS3B01G445400 chr3A 85.714 70 3 3 2122 2191 639560912 639560974 2.120000e-07 67.6
34 TraesCS3B01G445400 chr3A 85.714 70 3 3 2122 2191 639564160 639564222 2.120000e-07 67.6
35 TraesCS3B01G445400 chr5B 78.924 669 91 31 85 738 418510262 418510895 3.050000e-110 409.0
36 TraesCS3B01G445400 chr4A 85.176 398 44 10 96 487 688390447 688390835 8.550000e-106 394.0
37 TraesCS3B01G445400 chrUn 85.411 377 40 8 73 439 37868968 37868597 8.610000e-101 377.0
38 TraesCS3B01G445400 chrUn 85.411 377 40 8 73 439 333561956 333561585 8.610000e-101 377.0
39 TraesCS3B01G445400 chrUn 82.028 217 36 2 525 738 473532664 473532880 7.250000e-42 182.0
40 TraesCS3B01G445400 chr5A 83.535 413 44 15 85 487 54458804 54458406 6.700000e-97 364.0
41 TraesCS3B01G445400 chr5A 82.883 111 15 3 2452 2560 671369286 671369178 2.700000e-16 97.1
42 TraesCS3B01G445400 chr5A 78.378 111 19 5 2668 2777 27790606 27790500 2.120000e-07 67.6
43 TraesCS3B01G445400 chr2A 83.051 413 48 13 85 487 69300809 69301209 4.040000e-94 355.0
44 TraesCS3B01G445400 chr1A 82.716 405 50 13 96 493 158721077 158720686 3.140000e-90 342.0
45 TraesCS3B01G445400 chr6A 82.282 412 53 13 85 486 454098539 454098138 4.060000e-89 339.0
46 TraesCS3B01G445400 chr6A 78.505 107 8 4 2485 2579 573638768 573638871 4.580000e-04 56.5
47 TraesCS3B01G445400 chr1B 83.486 218 33 2 525 739 394913637 394913420 2.000000e-47 200.0
48 TraesCS3B01G445400 chr1D 84.135 208 28 4 535 738 397181423 397181629 2.590000e-46 196.0
49 TraesCS3B01G445400 chr2D 84.343 198 28 3 544 738 24711538 24711341 1.200000e-44 191.0
50 TraesCS3B01G445400 chr2B 82.353 136 24 0 2426 2561 131810092 131809957 5.760000e-23 119.0
51 TraesCS3B01G445400 chr2B 100.000 30 0 0 2532 2561 131109763 131109792 4.580000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G445400 chr3B 685065654 685068941 3287 False 6072.000000 6072 100.000000 1 3288 1 chr3B.!!$F4 3287
1 TraesCS3B01G445400 chr3B 684619529 684620860 1331 True 1456.000000 1456 86.701000 842 2184 1 chr3B.!!$R1 1342
2 TraesCS3B01G445400 chr3B 661757377 661758038 661 False 474.000000 593 92.342500 1338 2039 2 chr3B.!!$F6 701
3 TraesCS3B01G445400 chr3B 661567116 661568918 1802 False 279.500000 440 89.527500 1720 2225 2 chr3B.!!$F5 505
4 TraesCS3B01G445400 chr3D 519949797 519951239 1442 True 1694.000000 1694 88.267000 847 2269 1 chr3D.!!$R2 1422
5 TraesCS3B01G445400 chr3D 520245358 520246622 1264 False 1541.000000 1541 89.308000 804 2023 1 chr3D.!!$F5 1219
6 TraesCS3B01G445400 chr3D 520280649 520282361 1712 False 948.000000 1683 88.908500 847 2583 2 chr3D.!!$F9 1736
7 TraesCS3B01G445400 chr3D 500090704 500091597 893 False 832.000000 832 83.667000 1290 2225 1 chr3D.!!$F2 935
8 TraesCS3B01G445400 chr3D 500019020 500019525 505 False 645.000000 645 89.804000 1536 2040 1 chr3D.!!$F1 504
9 TraesCS3B01G445400 chr3D 520224834 520225792 958 False 342.000000 475 91.330333 1 802 3 chr3D.!!$F8 801
10 TraesCS3B01G445400 chr3A 655668323 655670695 2372 False 997.333333 1373 90.902000 880 3276 3 chr3A.!!$F2 2396
11 TraesCS3B01G445400 chr3A 655785569 655788201 2632 False 549.750000 1218 88.149750 817 2930 4 chr3A.!!$F3 2113
12 TraesCS3B01G445400 chr5B 418510262 418510895 633 False 409.000000 409 78.924000 85 738 1 chr5B.!!$F1 653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
171 370 0.034059 AGGGCTCTGTGTTCTTCGTG 59.966 55.0 0.0 0.0 0.0 4.35 F
482 683 0.039165 CTCAGGCGCCTTCAAAAACC 60.039 55.0 30.6 0.0 0.0 3.27 F
622 823 0.249197 TCGAGCAGAGATTGATGCCG 60.249 55.0 0.0 0.0 43.6 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1886 3356 0.958382 TGCCCGTCCTTCAAAATCCG 60.958 55.000 0.00 0.00 0.00 4.18 R
1954 3425 1.135139 CTGATCGACCGTGGAAGATGT 59.865 52.381 0.00 0.00 0.00 3.06 R
2407 3949 1.377987 GGTAAGCGTTGGATGGCCA 60.378 57.895 8.56 8.56 44.17 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 4.093115 CGATTGTGTCGTACTGTAGTCTCT 59.907 45.833 0.00 0.00 45.19 3.10
78 79 2.286872 GTACTGTAGTCTCTGCCGCTA 58.713 52.381 0.00 0.00 0.00 4.26
83 84 2.888464 TAGTCTCTGCCGCTACCGCT 62.888 60.000 0.00 0.00 0.00 5.52
106 107 6.607600 GCTTGAGAAATTTATTAGGTCCCCTT 59.392 38.462 0.00 0.00 34.61 3.95
154 353 0.546598 GGTGGGGTGGATCTACAAGG 59.453 60.000 11.67 0.00 0.00 3.61
171 370 0.034059 AGGGCTCTGTGTTCTTCGTG 59.966 55.000 0.00 0.00 0.00 4.35
192 391 6.037830 TCGTGAACGTCTAGTGATCATCATAA 59.962 38.462 0.00 0.00 40.80 1.90
229 428 5.514274 AATTTTCTCTCGTTCTTTTGGCA 57.486 34.783 0.00 0.00 0.00 4.92
262 462 5.823353 GGTTAGAGAGTTTCTATCCTCGTG 58.177 45.833 9.56 0.00 41.85 4.35
294 494 7.658179 TTATTCGGATCTGATGAGTTTATGC 57.342 36.000 4.74 0.00 0.00 3.14
301 501 6.763135 GGATCTGATGAGTTTATGCTGTTGTA 59.237 38.462 0.00 0.00 0.00 2.41
384 585 8.579006 TGATGAAAATATAGTGATTCAATGGCC 58.421 33.333 0.00 0.00 35.62 5.36
385 586 8.716674 ATGAAAATATAGTGATTCAATGGCCT 57.283 30.769 3.32 0.00 35.62 5.19
386 587 7.944061 TGAAAATATAGTGATTCAATGGCCTG 58.056 34.615 3.32 0.00 0.00 4.85
387 588 5.972107 AATATAGTGATTCAATGGCCTGC 57.028 39.130 3.32 0.00 0.00 4.85
388 589 2.804986 TAGTGATTCAATGGCCTGCA 57.195 45.000 3.32 0.00 0.00 4.41
389 590 1.180029 AGTGATTCAATGGCCTGCAC 58.820 50.000 3.32 0.00 0.00 4.57
390 591 1.180029 GTGATTCAATGGCCTGCACT 58.820 50.000 3.32 0.00 0.00 4.40
391 592 1.547372 GTGATTCAATGGCCTGCACTT 59.453 47.619 3.32 0.00 0.00 3.16
392 593 1.820519 TGATTCAATGGCCTGCACTTC 59.179 47.619 3.32 0.00 0.00 3.01
393 594 2.097825 GATTCAATGGCCTGCACTTCT 58.902 47.619 3.32 0.00 0.00 2.85
394 595 2.877097 TTCAATGGCCTGCACTTCTA 57.123 45.000 3.32 0.00 0.00 2.10
395 596 2.408271 TCAATGGCCTGCACTTCTAG 57.592 50.000 3.32 0.00 0.00 2.43
396 597 1.065199 TCAATGGCCTGCACTTCTAGG 60.065 52.381 3.32 0.00 37.14 3.02
397 598 0.257039 AATGGCCTGCACTTCTAGGG 59.743 55.000 3.32 0.00 34.58 3.53
398 599 1.639635 ATGGCCTGCACTTCTAGGGG 61.640 60.000 3.32 0.00 34.58 4.79
399 600 2.592308 GCCTGCACTTCTAGGGGG 59.408 66.667 0.00 0.00 34.58 5.40
400 601 2.301738 GCCTGCACTTCTAGGGGGT 61.302 63.158 0.00 0.00 34.58 4.95
401 602 1.908483 CCTGCACTTCTAGGGGGTC 59.092 63.158 0.00 0.00 0.00 4.46
402 603 0.909610 CCTGCACTTCTAGGGGGTCA 60.910 60.000 0.00 0.00 0.00 4.02
403 604 1.207791 CTGCACTTCTAGGGGGTCAT 58.792 55.000 0.00 0.00 0.00 3.06
404 605 1.139853 CTGCACTTCTAGGGGGTCATC 59.860 57.143 0.00 0.00 0.00 2.92
405 606 0.470341 GCACTTCTAGGGGGTCATCC 59.530 60.000 0.00 0.00 0.00 3.51
406 607 1.972207 GCACTTCTAGGGGGTCATCCT 60.972 57.143 0.00 0.00 38.36 3.24
407 608 2.043227 CACTTCTAGGGGGTCATCCTC 58.957 57.143 0.00 0.00 35.92 3.71
408 609 1.333177 CTTCTAGGGGGTCATCCTCG 58.667 60.000 0.00 0.00 42.27 4.63
409 610 0.105658 TTCTAGGGGGTCATCCTCGG 60.106 60.000 0.00 0.00 42.27 4.63
410 611 2.122989 TAGGGGGTCATCCTCGGC 60.123 66.667 0.00 0.00 42.27 5.54
411 612 3.768833 TAGGGGGTCATCCTCGGCC 62.769 68.421 0.00 0.00 42.27 6.13
414 615 3.407967 GGGTCATCCTCGGCCCAA 61.408 66.667 0.00 0.00 40.76 4.12
415 616 2.190578 GGTCATCCTCGGCCCAAG 59.809 66.667 0.00 0.00 0.00 3.61
416 617 2.367202 GGTCATCCTCGGCCCAAGA 61.367 63.158 0.00 0.00 0.00 3.02
417 618 1.153349 GTCATCCTCGGCCCAAGAC 60.153 63.158 0.00 0.00 0.00 3.01
418 619 2.202932 CATCCTCGGCCCAAGACG 60.203 66.667 0.00 0.00 0.00 4.18
419 620 2.683933 ATCCTCGGCCCAAGACGT 60.684 61.111 0.00 0.00 0.00 4.34
420 621 2.291043 ATCCTCGGCCCAAGACGTT 61.291 57.895 0.00 0.00 0.00 3.99
421 622 2.240162 ATCCTCGGCCCAAGACGTTC 62.240 60.000 0.00 0.00 0.00 3.95
422 623 2.342279 CTCGGCCCAAGACGTTCA 59.658 61.111 0.00 0.00 0.00 3.18
423 624 1.079127 CTCGGCCCAAGACGTTCAT 60.079 57.895 0.00 0.00 0.00 2.57
424 625 1.079405 TCGGCCCAAGACGTTCATC 60.079 57.895 0.00 0.00 0.00 2.92
425 626 2.452813 CGGCCCAAGACGTTCATCG 61.453 63.158 0.00 0.00 46.00 3.84
426 627 1.079405 GGCCCAAGACGTTCATCGA 60.079 57.895 0.00 0.00 42.86 3.59
427 628 0.462047 GGCCCAAGACGTTCATCGAT 60.462 55.000 0.00 0.00 42.86 3.59
428 629 0.931005 GCCCAAGACGTTCATCGATC 59.069 55.000 0.00 0.00 42.86 3.69
429 630 1.739035 GCCCAAGACGTTCATCGATCA 60.739 52.381 0.00 0.00 42.86 2.92
430 631 2.616960 CCCAAGACGTTCATCGATCAA 58.383 47.619 0.00 0.00 42.86 2.57
431 632 2.604914 CCCAAGACGTTCATCGATCAAG 59.395 50.000 0.00 0.00 42.86 3.02
432 633 2.604914 CCAAGACGTTCATCGATCAAGG 59.395 50.000 0.00 0.00 42.86 3.61
433 634 1.927895 AGACGTTCATCGATCAAGGC 58.072 50.000 1.38 0.00 42.86 4.35
434 635 1.478510 AGACGTTCATCGATCAAGGCT 59.521 47.619 1.38 0.00 42.86 4.58
435 636 2.093973 AGACGTTCATCGATCAAGGCTT 60.094 45.455 1.38 0.00 42.86 4.35
436 637 2.271800 ACGTTCATCGATCAAGGCTTC 58.728 47.619 1.38 0.00 42.86 3.86
437 638 1.594862 CGTTCATCGATCAAGGCTTCC 59.405 52.381 0.00 0.00 42.86 3.46
438 639 1.943340 GTTCATCGATCAAGGCTTCCC 59.057 52.381 0.00 0.00 0.00 3.97
439 640 1.203237 TCATCGATCAAGGCTTCCCA 58.797 50.000 0.00 0.00 0.00 4.37
440 641 1.770658 TCATCGATCAAGGCTTCCCAT 59.229 47.619 0.00 0.00 0.00 4.00
441 642 2.149578 CATCGATCAAGGCTTCCCATC 58.850 52.381 0.00 0.00 0.00 3.51
442 643 0.469917 TCGATCAAGGCTTCCCATCC 59.530 55.000 0.00 0.00 0.00 3.51
443 644 0.536006 CGATCAAGGCTTCCCATCCC 60.536 60.000 0.00 0.00 0.00 3.85
444 645 0.178978 GATCAAGGCTTCCCATCCCC 60.179 60.000 0.00 0.00 0.00 4.81
445 646 0.925720 ATCAAGGCTTCCCATCCCCA 60.926 55.000 0.00 0.00 0.00 4.96
446 647 0.925720 TCAAGGCTTCCCATCCCCAT 60.926 55.000 0.00 0.00 0.00 4.00
447 648 0.468771 CAAGGCTTCCCATCCCCATC 60.469 60.000 0.00 0.00 0.00 3.51
448 649 0.628668 AAGGCTTCCCATCCCCATCT 60.629 55.000 0.00 0.00 0.00 2.90
449 650 0.628668 AGGCTTCCCATCCCCATCTT 60.629 55.000 0.00 0.00 0.00 2.40
450 651 0.262876 GGCTTCCCATCCCCATCTTT 59.737 55.000 0.00 0.00 0.00 2.52
451 652 1.343377 GGCTTCCCATCCCCATCTTTT 60.343 52.381 0.00 0.00 0.00 2.27
452 653 2.470990 GCTTCCCATCCCCATCTTTTT 58.529 47.619 0.00 0.00 0.00 1.94
453 654 3.629796 GGCTTCCCATCCCCATCTTTTTA 60.630 47.826 0.00 0.00 0.00 1.52
454 655 3.638627 GCTTCCCATCCCCATCTTTTTAG 59.361 47.826 0.00 0.00 0.00 1.85
455 656 4.631169 GCTTCCCATCCCCATCTTTTTAGA 60.631 45.833 0.00 0.00 0.00 2.10
456 657 5.709594 CTTCCCATCCCCATCTTTTTAGAT 58.290 41.667 0.00 0.00 0.00 1.98
457 658 5.065613 TCCCATCCCCATCTTTTTAGATG 57.934 43.478 7.93 7.93 43.79 2.90
465 666 4.802876 CATCTTTTTAGATGGGCGACTC 57.197 45.455 7.16 0.00 41.31 3.36
466 667 3.973206 TCTTTTTAGATGGGCGACTCA 57.027 42.857 0.00 0.00 0.00 3.41
467 668 3.861840 TCTTTTTAGATGGGCGACTCAG 58.138 45.455 0.00 0.00 0.00 3.35
468 669 2.691409 TTTTAGATGGGCGACTCAGG 57.309 50.000 0.00 0.00 0.00 3.86
469 670 0.178068 TTTAGATGGGCGACTCAGGC 59.822 55.000 0.00 0.00 0.00 4.85
470 671 2.016393 TTAGATGGGCGACTCAGGCG 62.016 60.000 0.00 0.00 37.59 5.52
477 678 2.048222 CGACTCAGGCGCCTTCAA 60.048 61.111 30.60 14.80 0.00 2.69
478 679 1.667830 CGACTCAGGCGCCTTCAAA 60.668 57.895 30.60 11.97 0.00 2.69
479 680 1.227999 CGACTCAGGCGCCTTCAAAA 61.228 55.000 30.60 9.19 0.00 2.44
480 681 0.951558 GACTCAGGCGCCTTCAAAAA 59.048 50.000 30.60 7.23 0.00 1.94
481 682 0.668535 ACTCAGGCGCCTTCAAAAAC 59.331 50.000 30.60 0.00 0.00 2.43
482 683 0.039165 CTCAGGCGCCTTCAAAAACC 60.039 55.000 30.60 0.00 0.00 3.27
483 684 0.753479 TCAGGCGCCTTCAAAAACCA 60.753 50.000 30.60 0.00 0.00 3.67
484 685 0.318120 CAGGCGCCTTCAAAAACCAT 59.682 50.000 30.60 0.00 0.00 3.55
485 686 1.047801 AGGCGCCTTCAAAAACCATT 58.952 45.000 27.08 0.00 0.00 3.16
486 687 2.029470 CAGGCGCCTTCAAAAACCATTA 60.029 45.455 30.60 0.00 0.00 1.90
487 688 2.231235 AGGCGCCTTCAAAAACCATTAG 59.769 45.455 27.08 0.00 0.00 1.73
488 689 2.029380 GGCGCCTTCAAAAACCATTAGT 60.029 45.455 22.15 0.00 0.00 2.24
489 690 3.191791 GGCGCCTTCAAAAACCATTAGTA 59.808 43.478 22.15 0.00 0.00 1.82
490 691 4.412207 GCGCCTTCAAAAACCATTAGTAG 58.588 43.478 0.00 0.00 0.00 2.57
491 692 4.082949 GCGCCTTCAAAAACCATTAGTAGT 60.083 41.667 0.00 0.00 0.00 2.73
492 693 5.122711 GCGCCTTCAAAAACCATTAGTAGTA 59.877 40.000 0.00 0.00 0.00 1.82
493 694 6.674760 GCGCCTTCAAAAACCATTAGTAGTAG 60.675 42.308 0.00 0.00 0.00 2.57
494 695 6.183360 CGCCTTCAAAAACCATTAGTAGTAGG 60.183 42.308 0.00 0.00 0.00 3.18
495 696 6.657966 GCCTTCAAAAACCATTAGTAGTAGGT 59.342 38.462 0.00 0.00 35.47 3.08
496 697 7.148289 GCCTTCAAAAACCATTAGTAGTAGGTC 60.148 40.741 0.00 0.00 32.05 3.85
497 698 7.336176 CCTTCAAAAACCATTAGTAGTAGGTCC 59.664 40.741 0.00 0.00 32.05 4.46
498 699 7.563724 TCAAAAACCATTAGTAGTAGGTCCT 57.436 36.000 0.00 0.00 32.05 3.85
499 700 7.391620 TCAAAAACCATTAGTAGTAGGTCCTG 58.608 38.462 0.00 0.00 32.05 3.86
500 701 6.947376 AAAACCATTAGTAGTAGGTCCTGT 57.053 37.500 0.00 0.00 32.05 4.00
501 702 6.541934 AAACCATTAGTAGTAGGTCCTGTC 57.458 41.667 0.00 0.00 32.05 3.51
502 703 4.544683 ACCATTAGTAGTAGGTCCTGTCC 58.455 47.826 0.00 0.00 0.00 4.02
503 704 3.568853 CCATTAGTAGTAGGTCCTGTCCG 59.431 52.174 0.00 0.00 0.00 4.79
504 705 3.287867 TTAGTAGTAGGTCCTGTCCGG 57.712 52.381 0.00 0.00 0.00 5.14
505 706 0.395448 AGTAGTAGGTCCTGTCCGGC 60.395 60.000 0.00 0.00 0.00 6.13
506 707 1.452651 TAGTAGGTCCTGTCCGGCG 60.453 63.158 0.00 0.00 0.00 6.46
507 708 2.898920 TAGTAGGTCCTGTCCGGCGG 62.899 65.000 22.51 22.51 0.00 6.13
528 729 4.125695 GGACGAGTCCCGGGTTCG 62.126 72.222 33.31 33.31 43.94 3.95
530 731 3.621892 GACGAGTCCCGGGTTCGTG 62.622 68.421 40.11 25.13 46.38 4.35
532 733 3.998672 GAGTCCCGGGTTCGTGCA 61.999 66.667 22.86 0.00 33.95 4.57
533 734 3.310860 GAGTCCCGGGTTCGTGCAT 62.311 63.158 22.86 0.00 33.95 3.96
534 735 3.124921 GTCCCGGGTTCGTGCATG 61.125 66.667 22.86 0.00 33.95 4.06
535 736 3.632080 TCCCGGGTTCGTGCATGT 61.632 61.111 22.86 0.00 33.95 3.21
536 737 3.430862 CCCGGGTTCGTGCATGTG 61.431 66.667 14.18 0.00 33.95 3.21
537 738 4.101790 CCGGGTTCGTGCATGTGC 62.102 66.667 5.68 0.00 42.50 4.57
547 748 3.762293 GCATGTGCAAGGGTGACA 58.238 55.556 0.00 0.00 41.59 3.58
548 749 2.040330 GCATGTGCAAGGGTGACAA 58.960 52.632 0.00 0.00 41.59 3.18
549 750 0.318955 GCATGTGCAAGGGTGACAAC 60.319 55.000 0.00 0.00 41.59 3.32
550 751 1.031235 CATGTGCAAGGGTGACAACA 58.969 50.000 0.00 0.00 0.00 3.33
551 752 1.614903 CATGTGCAAGGGTGACAACAT 59.385 47.619 0.00 0.00 0.00 2.71
552 753 1.317613 TGTGCAAGGGTGACAACATC 58.682 50.000 0.00 0.00 0.00 3.06
553 754 1.317613 GTGCAAGGGTGACAACATCA 58.682 50.000 0.00 0.00 33.79 3.07
554 755 1.888512 GTGCAAGGGTGACAACATCAT 59.111 47.619 0.00 0.00 40.28 2.45
555 756 2.297033 GTGCAAGGGTGACAACATCATT 59.703 45.455 0.00 0.00 40.28 2.57
557 758 2.297033 GCAAGGGTGACAACATCATTGT 59.703 45.455 9.04 0.00 46.37 2.71
558 759 3.612479 GCAAGGGTGACAACATCATTGTC 60.612 47.826 11.90 11.90 46.37 3.18
559 760 2.795329 AGGGTGACAACATCATTGTCC 58.205 47.619 15.26 8.04 46.01 4.02
560 761 2.108075 AGGGTGACAACATCATTGTCCA 59.892 45.455 15.26 3.45 46.01 4.02
561 762 2.489329 GGGTGACAACATCATTGTCCAG 59.511 50.000 15.26 0.00 46.01 3.86
562 763 3.149196 GGTGACAACATCATTGTCCAGT 58.851 45.455 15.26 0.00 46.01 4.00
563 764 3.058016 GGTGACAACATCATTGTCCAGTG 60.058 47.826 15.26 0.00 46.01 3.66
564 765 2.553602 TGACAACATCATTGTCCAGTGC 59.446 45.455 15.26 0.00 46.01 4.40
565 766 2.553602 GACAACATCATTGTCCAGTGCA 59.446 45.455 8.31 0.00 42.07 4.57
566 767 2.957680 ACAACATCATTGTCCAGTGCAA 59.042 40.909 0.00 0.00 34.06 4.08
567 768 3.575256 ACAACATCATTGTCCAGTGCAAT 59.425 39.130 0.00 0.00 37.06 3.56
568 769 4.039488 ACAACATCATTGTCCAGTGCAATT 59.961 37.500 0.00 0.00 34.68 2.32
569 770 4.182693 ACATCATTGTCCAGTGCAATTG 57.817 40.909 0.00 0.00 34.68 2.32
570 771 2.728690 TCATTGTCCAGTGCAATTGC 57.271 45.000 23.69 23.69 42.50 3.56
571 772 7.474983 AACATCATTGTCCAGTGCAATTGCA 62.475 40.000 28.80 28.80 41.56 4.08
583 784 2.724349 GCAATTGCAGCCTCTTTATCG 58.276 47.619 25.36 0.00 41.59 2.92
584 785 2.355756 GCAATTGCAGCCTCTTTATCGA 59.644 45.455 25.36 0.00 41.59 3.59
585 786 3.181497 GCAATTGCAGCCTCTTTATCGAA 60.181 43.478 25.36 0.00 41.59 3.71
586 787 4.595116 CAATTGCAGCCTCTTTATCGAAG 58.405 43.478 0.00 0.00 36.67 3.79
587 788 1.656652 TGCAGCCTCTTTATCGAAGC 58.343 50.000 0.00 0.00 35.24 3.86
588 789 0.940833 GCAGCCTCTTTATCGAAGCC 59.059 55.000 0.00 0.00 35.24 4.35
589 790 1.474143 GCAGCCTCTTTATCGAAGCCT 60.474 52.381 0.00 0.00 35.24 4.58
590 791 2.911484 CAGCCTCTTTATCGAAGCCTT 58.089 47.619 0.00 0.00 35.24 4.35
591 792 3.274288 CAGCCTCTTTATCGAAGCCTTT 58.726 45.455 0.00 0.00 35.24 3.11
592 793 3.311048 CAGCCTCTTTATCGAAGCCTTTC 59.689 47.826 0.00 0.00 35.24 2.62
593 794 3.055094 AGCCTCTTTATCGAAGCCTTTCA 60.055 43.478 0.00 0.00 35.24 2.69
594 795 3.689649 GCCTCTTTATCGAAGCCTTTCAA 59.310 43.478 0.00 0.00 35.24 2.69
595 796 4.201861 GCCTCTTTATCGAAGCCTTTCAAG 60.202 45.833 0.00 0.00 35.24 3.02
596 797 4.938226 CCTCTTTATCGAAGCCTTTCAAGT 59.062 41.667 0.00 0.00 35.24 3.16
597 798 6.106673 CCTCTTTATCGAAGCCTTTCAAGTA 58.893 40.000 0.00 0.00 35.24 2.24
598 799 6.763610 CCTCTTTATCGAAGCCTTTCAAGTAT 59.236 38.462 0.00 0.00 35.24 2.12
599 800 7.281100 CCTCTTTATCGAAGCCTTTCAAGTATT 59.719 37.037 0.00 0.00 35.24 1.89
600 801 8.561738 TCTTTATCGAAGCCTTTCAAGTATTT 57.438 30.769 0.00 0.00 35.24 1.40
601 802 8.665685 TCTTTATCGAAGCCTTTCAAGTATTTC 58.334 33.333 0.00 0.00 35.24 2.17
602 803 8.561738 TTTATCGAAGCCTTTCAAGTATTTCT 57.438 30.769 0.00 0.00 32.67 2.52
603 804 8.561738 TTATCGAAGCCTTTCAAGTATTTCTT 57.438 30.769 0.00 0.00 36.75 2.52
604 805 6.481954 TCGAAGCCTTTCAAGTATTTCTTC 57.518 37.500 0.00 0.00 33.63 2.87
605 806 5.316770 CGAAGCCTTTCAAGTATTTCTTCG 58.683 41.667 6.65 6.65 43.22 3.79
606 807 6.481954 GAAGCCTTTCAAGTATTTCTTCGA 57.518 37.500 0.00 0.00 33.63 3.71
607 808 6.487689 AAGCCTTTCAAGTATTTCTTCGAG 57.512 37.500 0.00 0.00 33.63 4.04
608 809 4.393371 AGCCTTTCAAGTATTTCTTCGAGC 59.607 41.667 0.00 0.00 33.63 5.03
609 810 4.154195 GCCTTTCAAGTATTTCTTCGAGCA 59.846 41.667 0.00 0.00 33.63 4.26
610 811 5.672321 GCCTTTCAAGTATTTCTTCGAGCAG 60.672 44.000 0.00 0.00 33.63 4.24
611 812 5.639506 CCTTTCAAGTATTTCTTCGAGCAGA 59.360 40.000 0.00 0.00 33.63 4.26
612 813 6.183360 CCTTTCAAGTATTTCTTCGAGCAGAG 60.183 42.308 0.00 0.00 33.63 3.35
613 814 5.644977 TCAAGTATTTCTTCGAGCAGAGA 57.355 39.130 0.00 0.00 33.63 3.10
614 815 6.214191 TCAAGTATTTCTTCGAGCAGAGAT 57.786 37.500 0.00 0.00 33.63 2.75
615 816 6.634805 TCAAGTATTTCTTCGAGCAGAGATT 58.365 36.000 0.00 0.00 33.63 2.40
616 817 6.533012 TCAAGTATTTCTTCGAGCAGAGATTG 59.467 38.462 0.00 0.00 33.63 2.67
617 818 6.214191 AGTATTTCTTCGAGCAGAGATTGA 57.786 37.500 0.00 0.00 0.00 2.57
618 819 6.815089 AGTATTTCTTCGAGCAGAGATTGAT 58.185 36.000 0.00 0.00 0.00 2.57
619 820 5.987777 ATTTCTTCGAGCAGAGATTGATG 57.012 39.130 0.00 0.00 0.00 3.07
620 821 2.819115 TCTTCGAGCAGAGATTGATGC 58.181 47.619 0.00 0.00 42.87 3.91
621 822 1.865970 CTTCGAGCAGAGATTGATGCC 59.134 52.381 0.00 0.00 43.60 4.40
622 823 0.249197 TCGAGCAGAGATTGATGCCG 60.249 55.000 0.00 0.00 43.60 5.69
623 824 1.829349 CGAGCAGAGATTGATGCCGC 61.829 60.000 0.00 0.00 43.60 6.53
624 825 1.829349 GAGCAGAGATTGATGCCGCG 61.829 60.000 0.00 0.00 43.60 6.46
625 826 1.884464 GCAGAGATTGATGCCGCGA 60.884 57.895 8.23 0.00 36.41 5.87
626 827 1.431488 GCAGAGATTGATGCCGCGAA 61.431 55.000 8.23 0.00 36.41 4.70
627 828 0.580578 CAGAGATTGATGCCGCGAAG 59.419 55.000 8.23 0.00 0.00 3.79
628 829 0.461548 AGAGATTGATGCCGCGAAGA 59.538 50.000 8.23 0.00 0.00 2.87
629 830 1.134699 AGAGATTGATGCCGCGAAGAA 60.135 47.619 8.23 0.00 0.00 2.52
630 831 1.260033 GAGATTGATGCCGCGAAGAAG 59.740 52.381 8.23 0.00 0.00 2.85
631 832 0.305922 GATTGATGCCGCGAAGAAGG 59.694 55.000 8.23 0.00 0.00 3.46
632 833 0.392998 ATTGATGCCGCGAAGAAGGT 60.393 50.000 8.23 0.00 0.00 3.50
633 834 1.298157 TTGATGCCGCGAAGAAGGTG 61.298 55.000 8.23 0.00 0.00 4.00
634 835 1.741770 GATGCCGCGAAGAAGGTGT 60.742 57.895 8.23 0.00 0.00 4.16
635 836 1.696832 GATGCCGCGAAGAAGGTGTC 61.697 60.000 8.23 0.00 0.00 3.67
636 837 2.357034 GCCGCGAAGAAGGTGTCA 60.357 61.111 8.23 0.00 0.00 3.58
637 838 1.959226 GCCGCGAAGAAGGTGTCAA 60.959 57.895 8.23 0.00 0.00 3.18
638 839 1.503818 GCCGCGAAGAAGGTGTCAAA 61.504 55.000 8.23 0.00 0.00 2.69
639 840 0.512952 CCGCGAAGAAGGTGTCAAAG 59.487 55.000 8.23 0.00 0.00 2.77
640 841 1.497991 CGCGAAGAAGGTGTCAAAGA 58.502 50.000 0.00 0.00 0.00 2.52
641 842 1.457303 CGCGAAGAAGGTGTCAAAGAG 59.543 52.381 0.00 0.00 0.00 2.85
642 843 2.755650 GCGAAGAAGGTGTCAAAGAGA 58.244 47.619 0.00 0.00 0.00 3.10
643 844 3.330267 GCGAAGAAGGTGTCAAAGAGAT 58.670 45.455 0.00 0.00 0.00 2.75
644 845 3.748568 GCGAAGAAGGTGTCAAAGAGATT 59.251 43.478 0.00 0.00 0.00 2.40
645 846 4.214332 GCGAAGAAGGTGTCAAAGAGATTT 59.786 41.667 0.00 0.00 0.00 2.17
646 847 5.615764 GCGAAGAAGGTGTCAAAGAGATTTC 60.616 44.000 0.00 0.00 0.00 2.17
647 848 5.466728 CGAAGAAGGTGTCAAAGAGATTTCA 59.533 40.000 0.00 0.00 0.00 2.69
648 849 6.148480 CGAAGAAGGTGTCAAAGAGATTTCAT 59.852 38.462 0.00 0.00 0.00 2.57
649 850 7.308229 CGAAGAAGGTGTCAAAGAGATTTCATT 60.308 37.037 0.00 0.00 0.00 2.57
650 851 8.924511 AAGAAGGTGTCAAAGAGATTTCATTA 57.075 30.769 0.00 0.00 0.00 1.90
651 852 9.525826 AAGAAGGTGTCAAAGAGATTTCATTAT 57.474 29.630 0.00 0.00 0.00 1.28
655 856 9.965902 AGGTGTCAAAGAGATTTCATTATAACT 57.034 29.630 0.00 0.00 0.00 2.24
677 878 7.885009 ACTCTTAGTCATAGGAGTTACTTCC 57.115 40.000 0.00 0.00 43.70 3.46
678 879 7.645002 ACTCTTAGTCATAGGAGTTACTTCCT 58.355 38.462 8.09 8.09 43.70 3.36
689 890 6.779860 AGGAGTTACTTCCTATTTTCTTGCA 58.220 36.000 2.35 0.00 45.76 4.08
690 891 7.406104 AGGAGTTACTTCCTATTTTCTTGCAT 58.594 34.615 0.00 0.00 45.76 3.96
691 892 7.554476 AGGAGTTACTTCCTATTTTCTTGCATC 59.446 37.037 0.00 0.00 45.76 3.91
692 893 7.554476 GGAGTTACTTCCTATTTTCTTGCATCT 59.446 37.037 0.00 0.00 34.27 2.90
693 894 8.870075 AGTTACTTCCTATTTTCTTGCATCTT 57.130 30.769 0.00 0.00 0.00 2.40
694 895 9.959721 AGTTACTTCCTATTTTCTTGCATCTTA 57.040 29.630 0.00 0.00 0.00 2.10
696 897 7.872113 ACTTCCTATTTTCTTGCATCTTAGG 57.128 36.000 0.00 0.00 0.00 2.69
697 898 7.406104 ACTTCCTATTTTCTTGCATCTTAGGT 58.594 34.615 0.00 0.00 0.00 3.08
698 899 7.890655 ACTTCCTATTTTCTTGCATCTTAGGTT 59.109 33.333 0.00 0.00 0.00 3.50
699 900 7.865706 TCCTATTTTCTTGCATCTTAGGTTC 57.134 36.000 0.00 0.00 0.00 3.62
700 901 7.402054 TCCTATTTTCTTGCATCTTAGGTTCA 58.598 34.615 0.00 0.00 0.00 3.18
701 902 7.888021 TCCTATTTTCTTGCATCTTAGGTTCAA 59.112 33.333 0.00 0.00 0.00 2.69
702 903 8.522830 CCTATTTTCTTGCATCTTAGGTTCAAA 58.477 33.333 0.00 0.00 0.00 2.69
706 907 9.912634 TTTTCTTGCATCTTAGGTTCAAATAAG 57.087 29.630 0.00 0.00 0.00 1.73
707 908 8.635765 TTCTTGCATCTTAGGTTCAAATAAGT 57.364 30.769 0.00 0.00 32.09 2.24
708 909 8.044060 TCTTGCATCTTAGGTTCAAATAAGTG 57.956 34.615 0.00 0.00 32.09 3.16
709 910 7.665559 TCTTGCATCTTAGGTTCAAATAAGTGT 59.334 33.333 0.00 0.00 32.09 3.55
710 911 8.856153 TTGCATCTTAGGTTCAAATAAGTGTA 57.144 30.769 0.00 0.00 32.09 2.90
711 912 9.461312 TTGCATCTTAGGTTCAAATAAGTGTAT 57.539 29.630 0.00 0.00 32.09 2.29
712 913 8.892723 TGCATCTTAGGTTCAAATAAGTGTATG 58.107 33.333 0.00 0.00 32.09 2.39
713 914 8.893727 GCATCTTAGGTTCAAATAAGTGTATGT 58.106 33.333 0.00 0.00 32.09 2.29
715 916 9.959721 ATCTTAGGTTCAAATAAGTGTATGTGT 57.040 29.630 0.00 0.00 32.09 3.72
728 929 9.865321 ATAAGTGTATGTGTAATTGTTACGAGT 57.135 29.630 0.00 0.00 38.98 4.18
730 931 9.865321 AAGTGTATGTGTAATTGTTACGAGTAT 57.135 29.630 0.00 0.00 38.98 2.12
731 932 9.297586 AGTGTATGTGTAATTGTTACGAGTATG 57.702 33.333 0.00 0.00 38.98 2.39
732 933 9.292846 GTGTATGTGTAATTGTTACGAGTATGA 57.707 33.333 0.00 0.00 38.98 2.15
733 934 9.857957 TGTATGTGTAATTGTTACGAGTATGAA 57.142 29.630 0.00 0.00 38.98 2.57
776 977 9.582431 TTTATATGACTCAAAGAAACTAGGACG 57.418 33.333 0.00 0.00 0.00 4.79
777 978 5.723672 ATGACTCAAAGAAACTAGGACGA 57.276 39.130 0.00 0.00 0.00 4.20
778 979 5.524971 TGACTCAAAGAAACTAGGACGAA 57.475 39.130 0.00 0.00 0.00 3.85
779 980 5.529791 TGACTCAAAGAAACTAGGACGAAG 58.470 41.667 0.00 0.00 0.00 3.79
780 981 5.301045 TGACTCAAAGAAACTAGGACGAAGA 59.699 40.000 0.00 0.00 0.00 2.87
781 982 6.015350 TGACTCAAAGAAACTAGGACGAAGAT 60.015 38.462 0.00 0.00 0.00 2.40
782 983 7.176165 TGACTCAAAGAAACTAGGACGAAGATA 59.824 37.037 0.00 0.00 0.00 1.98
783 984 7.540299 ACTCAAAGAAACTAGGACGAAGATAG 58.460 38.462 0.00 0.00 0.00 2.08
784 985 7.177041 ACTCAAAGAAACTAGGACGAAGATAGT 59.823 37.037 0.00 0.00 0.00 2.12
785 986 7.893658 TCAAAGAAACTAGGACGAAGATAGTT 58.106 34.615 0.00 0.00 40.55 2.24
786 987 7.813148 TCAAAGAAACTAGGACGAAGATAGTTG 59.187 37.037 0.00 0.00 39.17 3.16
787 988 6.837471 AGAAACTAGGACGAAGATAGTTGT 57.163 37.500 0.00 0.00 39.17 3.32
788 989 7.934855 AGAAACTAGGACGAAGATAGTTGTA 57.065 36.000 0.00 0.00 39.17 2.41
789 990 8.345724 AGAAACTAGGACGAAGATAGTTGTAA 57.654 34.615 0.00 0.00 39.17 2.41
790 991 8.242739 AGAAACTAGGACGAAGATAGTTGTAAC 58.757 37.037 0.00 0.00 39.17 2.50
791 992 7.458409 AACTAGGACGAAGATAGTTGTAACA 57.542 36.000 0.00 0.00 38.11 2.41
792 993 7.642082 ACTAGGACGAAGATAGTTGTAACAT 57.358 36.000 0.00 0.00 0.00 2.71
793 994 7.481642 ACTAGGACGAAGATAGTTGTAACATG 58.518 38.462 0.00 0.00 0.00 3.21
794 995 5.109903 AGGACGAAGATAGTTGTAACATGC 58.890 41.667 0.00 0.00 0.00 4.06
795 996 4.868171 GGACGAAGATAGTTGTAACATGCA 59.132 41.667 0.00 0.00 0.00 3.96
796 997 5.005779 GGACGAAGATAGTTGTAACATGCAG 59.994 44.000 0.00 0.00 0.00 4.41
797 998 4.870426 ACGAAGATAGTTGTAACATGCAGG 59.130 41.667 0.00 0.00 0.00 4.85
798 999 5.109210 CGAAGATAGTTGTAACATGCAGGA 58.891 41.667 4.84 0.00 0.00 3.86
799 1000 5.005779 CGAAGATAGTTGTAACATGCAGGAC 59.994 44.000 4.84 0.00 0.00 3.85
800 1001 4.770795 AGATAGTTGTAACATGCAGGACC 58.229 43.478 4.84 0.00 0.00 4.46
801 1002 4.471386 AGATAGTTGTAACATGCAGGACCT 59.529 41.667 4.84 0.00 0.00 3.85
802 1003 3.059352 AGTTGTAACATGCAGGACCTC 57.941 47.619 4.84 0.00 0.00 3.85
810 1011 2.894387 GCAGGACCTCGAGCATGC 60.894 66.667 10.51 10.51 0.00 4.06
859 1074 2.921754 GCCGGATGTATGAGCGTATAAC 59.078 50.000 5.05 0.00 0.00 1.89
877 1092 6.701841 CGTATAACTGCACCTAAACAGATGAT 59.298 38.462 0.00 0.00 37.35 2.45
878 1093 7.865889 CGTATAACTGCACCTAAACAGATGATA 59.134 37.037 0.00 0.00 37.35 2.15
913 1128 2.139917 TCGAAAACCAATCCTGTGTCG 58.860 47.619 0.00 0.00 0.00 4.35
941 1156 3.555168 CGACTACAGCTCCCTTTCTTGTT 60.555 47.826 0.00 0.00 0.00 2.83
979 1194 5.280062 GCACCCTCCTTTTATATACTCCTCC 60.280 48.000 0.00 0.00 0.00 4.30
987 1202 1.533469 ATATACTCCTCCGCACCGCC 61.533 60.000 0.00 0.00 0.00 6.13
988 1203 2.914756 TATACTCCTCCGCACCGCCA 62.915 60.000 0.00 0.00 0.00 5.69
1029 1251 9.868277 ACAAGAGATCTCTAATCTAACAACAAG 57.132 33.333 25.37 0.00 39.39 3.16
1036 1267 6.807230 TCTCTAATCTAACAACAAGAAGCGAC 59.193 38.462 0.00 0.00 0.00 5.19
1057 1290 2.478709 CCGAGATCTAGATATGCACCGC 60.479 54.545 4.18 0.00 0.00 5.68
1505 2098 3.584052 CCCTCGACTACCTCGCCG 61.584 72.222 0.00 0.00 42.62 6.46
1506 2099 2.513204 CCTCGACTACCTCGCCGA 60.513 66.667 0.00 0.00 42.62 5.54
1507 2100 2.535788 CCTCGACTACCTCGCCGAG 61.536 68.421 7.25 7.25 45.54 4.63
1744 3214 1.756950 CTACCTCGGCCAGCAGGTA 60.757 63.158 19.52 19.52 41.55 3.08
1954 3425 2.282674 CTGCTTCAGGGCCTGCAA 60.283 61.111 29.02 20.63 34.90 4.08
2081 3572 2.281762 GCGTCGATCATTGGTAGTTCAC 59.718 50.000 0.00 0.00 0.00 3.18
2241 3757 9.929722 TTTAGTGATGCGTGATGTAATAATTTC 57.070 29.630 0.00 0.00 0.00 2.17
2290 3808 6.795114 GTGTATAAACAACCTTCAATCGTGTG 59.205 38.462 0.00 0.00 37.36 3.82
2291 3809 6.706716 TGTATAAACAACCTTCAATCGTGTGA 59.293 34.615 0.00 0.00 30.91 3.58
2407 3949 7.445707 TGTTCGTAGATAGTGATATGAAGAGCT 59.554 37.037 0.00 0.00 35.04 4.09
2444 3986 3.853475 ACCGTAAACCTTCATCCGTAAG 58.147 45.455 0.00 0.00 0.00 2.34
2446 3988 4.161001 ACCGTAAACCTTCATCCGTAAGAT 59.839 41.667 0.00 0.00 43.02 2.40
2497 4039 4.629634 AGACGACATAATTCATGCAAACGA 59.370 37.500 0.00 0.00 38.29 3.85
2615 4347 1.639722 TCTTGACGAGTTCCCCATCA 58.360 50.000 0.00 0.00 0.00 3.07
2618 4350 1.275666 TGACGAGTTCCCCATCATGT 58.724 50.000 0.00 0.00 0.00 3.21
3014 4805 9.093970 TCAATAAAGAAGTATCACCGTGTATTG 57.906 33.333 0.00 3.08 0.00 1.90
3015 4806 9.093970 CAATAAAGAAGTATCACCGTGTATTGA 57.906 33.333 0.00 0.00 30.40 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 2.483106 GCAGAGACTACAGTACGACACA 59.517 50.000 0.00 0.00 0.00 3.72
57 58 0.248134 GCGGCAGAGACTACAGTACG 60.248 60.000 0.00 0.00 0.00 3.67
78 79 5.589050 GGACCTAATAAATTTCTCAAGCGGT 59.411 40.000 0.00 0.00 0.00 5.68
154 353 1.865865 TTCACGAAGAACACAGAGCC 58.134 50.000 0.00 0.00 0.00 4.70
208 407 4.580580 ACTGCCAAAAGAACGAGAGAAAAT 59.419 37.500 0.00 0.00 0.00 1.82
229 428 2.826488 ACTCTCTAACCTCATGGCACT 58.174 47.619 0.00 0.00 36.63 4.40
260 459 6.030548 TCAGATCCGAATAATCAGATCCAC 57.969 41.667 1.12 0.00 39.38 4.02
261 461 6.438425 TCATCAGATCCGAATAATCAGATCCA 59.562 38.462 1.12 0.00 39.38 3.41
262 462 6.871844 TCATCAGATCCGAATAATCAGATCC 58.128 40.000 1.12 0.00 39.38 3.36
267 467 9.428097 CATAAACTCATCAGATCCGAATAATCA 57.572 33.333 0.00 0.00 0.00 2.57
378 579 0.257039 CCCTAGAAGTGCAGGCCATT 59.743 55.000 5.01 0.00 0.00 3.16
379 580 1.639635 CCCCTAGAAGTGCAGGCCAT 61.640 60.000 5.01 0.00 0.00 4.40
380 581 2.300967 CCCCTAGAAGTGCAGGCCA 61.301 63.158 5.01 0.00 0.00 5.36
381 582 2.592308 CCCCTAGAAGTGCAGGCC 59.408 66.667 0.00 0.00 0.00 5.19
382 583 2.258748 GACCCCCTAGAAGTGCAGGC 62.259 65.000 0.00 0.00 0.00 4.85
383 584 0.909610 TGACCCCCTAGAAGTGCAGG 60.910 60.000 0.00 0.00 0.00 4.85
384 585 1.139853 GATGACCCCCTAGAAGTGCAG 59.860 57.143 0.00 0.00 0.00 4.41
385 586 1.204146 GATGACCCCCTAGAAGTGCA 58.796 55.000 0.00 0.00 0.00 4.57
386 587 0.470341 GGATGACCCCCTAGAAGTGC 59.530 60.000 0.00 0.00 0.00 4.40
387 588 2.043227 GAGGATGACCCCCTAGAAGTG 58.957 57.143 0.00 0.00 36.73 3.16
388 589 1.411787 CGAGGATGACCCCCTAGAAGT 60.412 57.143 0.00 0.00 36.73 3.01
389 590 1.333177 CGAGGATGACCCCCTAGAAG 58.667 60.000 0.00 0.00 36.73 2.85
390 591 0.105658 CCGAGGATGACCCCCTAGAA 60.106 60.000 0.00 0.00 36.73 2.10
391 592 1.542175 CCGAGGATGACCCCCTAGA 59.458 63.158 0.00 0.00 36.73 2.43
392 593 2.210711 GCCGAGGATGACCCCCTAG 61.211 68.421 0.00 0.00 36.73 3.02
393 594 2.122989 GCCGAGGATGACCCCCTA 60.123 66.667 0.00 0.00 36.73 3.53
397 598 3.406595 CTTGGGCCGAGGATGACCC 62.407 68.421 13.46 0.00 43.14 4.46
398 599 2.190578 CTTGGGCCGAGGATGACC 59.809 66.667 13.46 0.00 0.00 4.02
399 600 1.153349 GTCTTGGGCCGAGGATGAC 60.153 63.158 20.82 7.99 0.00 3.06
400 601 2.721167 CGTCTTGGGCCGAGGATGA 61.721 63.158 20.82 0.00 0.00 2.92
401 602 2.202932 CGTCTTGGGCCGAGGATG 60.203 66.667 20.82 3.53 0.00 3.51
402 603 2.240162 GAACGTCTTGGGCCGAGGAT 62.240 60.000 20.82 2.32 0.00 3.24
403 604 2.920912 AACGTCTTGGGCCGAGGA 60.921 61.111 20.82 4.87 0.00 3.71
404 605 2.434359 GAACGTCTTGGGCCGAGG 60.434 66.667 20.82 10.03 0.00 4.63
405 606 1.079127 ATGAACGTCTTGGGCCGAG 60.079 57.895 15.18 15.18 0.00 4.63
406 607 1.079405 GATGAACGTCTTGGGCCGA 60.079 57.895 0.00 0.00 0.00 5.54
407 608 2.452813 CGATGAACGTCTTGGGCCG 61.453 63.158 0.00 0.00 37.22 6.13
408 609 0.462047 ATCGATGAACGTCTTGGGCC 60.462 55.000 0.00 0.00 43.13 5.80
409 610 0.931005 GATCGATGAACGTCTTGGGC 59.069 55.000 0.54 0.00 43.13 5.36
410 611 2.293677 TGATCGATGAACGTCTTGGG 57.706 50.000 0.54 0.00 43.13 4.12
411 612 2.604914 CCTTGATCGATGAACGTCTTGG 59.395 50.000 0.54 0.00 43.13 3.61
412 613 2.029728 GCCTTGATCGATGAACGTCTTG 59.970 50.000 0.54 0.00 43.13 3.02
413 614 2.093973 AGCCTTGATCGATGAACGTCTT 60.094 45.455 0.54 0.00 43.13 3.01
414 615 1.478510 AGCCTTGATCGATGAACGTCT 59.521 47.619 0.54 0.00 43.13 4.18
415 616 1.927895 AGCCTTGATCGATGAACGTC 58.072 50.000 0.54 0.00 43.13 4.34
416 617 2.271800 GAAGCCTTGATCGATGAACGT 58.728 47.619 0.54 0.00 43.13 3.99
417 618 1.594862 GGAAGCCTTGATCGATGAACG 59.405 52.381 0.54 0.00 44.09 3.95
418 619 1.943340 GGGAAGCCTTGATCGATGAAC 59.057 52.381 0.54 0.00 0.00 3.18
419 620 1.559219 TGGGAAGCCTTGATCGATGAA 59.441 47.619 0.54 0.00 0.00 2.57
420 621 1.203237 TGGGAAGCCTTGATCGATGA 58.797 50.000 0.54 0.00 0.00 2.92
421 622 2.149578 GATGGGAAGCCTTGATCGATG 58.850 52.381 0.54 0.00 0.00 3.84
422 623 1.072965 GGATGGGAAGCCTTGATCGAT 59.927 52.381 0.00 0.00 0.00 3.59
423 624 0.469917 GGATGGGAAGCCTTGATCGA 59.530 55.000 0.00 0.00 0.00 3.59
424 625 0.536006 GGGATGGGAAGCCTTGATCG 60.536 60.000 0.00 0.00 0.00 3.69
425 626 0.178978 GGGGATGGGAAGCCTTGATC 60.179 60.000 0.00 0.00 0.00 2.92
426 627 0.925720 TGGGGATGGGAAGCCTTGAT 60.926 55.000 0.00 0.00 0.00 2.57
427 628 0.925720 ATGGGGATGGGAAGCCTTGA 60.926 55.000 0.00 0.00 0.00 3.02
428 629 0.468771 GATGGGGATGGGAAGCCTTG 60.469 60.000 0.00 0.00 0.00 3.61
429 630 0.628668 AGATGGGGATGGGAAGCCTT 60.629 55.000 0.00 0.00 0.00 4.35
430 631 0.628668 AAGATGGGGATGGGAAGCCT 60.629 55.000 0.00 0.00 0.00 4.58
431 632 0.262876 AAAGATGGGGATGGGAAGCC 59.737 55.000 0.00 0.00 0.00 4.35
432 633 2.165357 AAAAGATGGGGATGGGAAGC 57.835 50.000 0.00 0.00 0.00 3.86
433 634 5.129368 TCTAAAAAGATGGGGATGGGAAG 57.871 43.478 0.00 0.00 0.00 3.46
434 635 5.457686 CATCTAAAAAGATGGGGATGGGAA 58.542 41.667 7.37 0.00 41.31 3.97
435 636 5.065613 CATCTAAAAAGATGGGGATGGGA 57.934 43.478 7.37 0.00 41.31 4.37
444 645 4.191544 TGAGTCGCCCATCTAAAAAGATG 58.808 43.478 8.16 8.16 43.79 2.90
445 646 4.446371 CTGAGTCGCCCATCTAAAAAGAT 58.554 43.478 0.00 0.00 0.00 2.40
446 647 3.369471 CCTGAGTCGCCCATCTAAAAAGA 60.369 47.826 0.00 0.00 0.00 2.52
447 648 2.939103 CCTGAGTCGCCCATCTAAAAAG 59.061 50.000 0.00 0.00 0.00 2.27
448 649 2.939640 GCCTGAGTCGCCCATCTAAAAA 60.940 50.000 0.00 0.00 0.00 1.94
449 650 1.406887 GCCTGAGTCGCCCATCTAAAA 60.407 52.381 0.00 0.00 0.00 1.52
450 651 0.178068 GCCTGAGTCGCCCATCTAAA 59.822 55.000 0.00 0.00 0.00 1.85
451 652 1.823295 GCCTGAGTCGCCCATCTAA 59.177 57.895 0.00 0.00 0.00 2.10
452 653 2.490148 CGCCTGAGTCGCCCATCTA 61.490 63.158 0.00 0.00 0.00 1.98
453 654 3.842923 CGCCTGAGTCGCCCATCT 61.843 66.667 0.00 0.00 0.00 2.90
460 661 1.227999 TTTTGAAGGCGCCTGAGTCG 61.228 55.000 33.60 0.00 0.00 4.18
461 662 0.951558 TTTTTGAAGGCGCCTGAGTC 59.048 50.000 33.60 24.64 0.00 3.36
462 663 0.668535 GTTTTTGAAGGCGCCTGAGT 59.331 50.000 33.60 15.90 0.00 3.41
463 664 0.039165 GGTTTTTGAAGGCGCCTGAG 60.039 55.000 33.60 0.00 0.00 3.35
464 665 0.753479 TGGTTTTTGAAGGCGCCTGA 60.753 50.000 33.60 17.95 0.00 3.86
465 666 0.318120 ATGGTTTTTGAAGGCGCCTG 59.682 50.000 33.60 0.00 0.00 4.85
466 667 1.047801 AATGGTTTTTGAAGGCGCCT 58.952 45.000 27.08 27.08 0.00 5.52
467 668 2.029380 ACTAATGGTTTTTGAAGGCGCC 60.029 45.455 21.89 21.89 0.00 6.53
468 669 3.297830 ACTAATGGTTTTTGAAGGCGC 57.702 42.857 0.00 0.00 0.00 6.53
469 670 5.622770 ACTACTAATGGTTTTTGAAGGCG 57.377 39.130 0.00 0.00 0.00 5.52
470 671 6.657966 ACCTACTACTAATGGTTTTTGAAGGC 59.342 38.462 0.00 0.00 0.00 4.35
471 672 7.336176 GGACCTACTACTAATGGTTTTTGAAGG 59.664 40.741 0.00 0.00 32.30 3.46
472 673 8.101419 AGGACCTACTACTAATGGTTTTTGAAG 58.899 37.037 0.00 0.00 32.30 3.02
473 674 7.881232 CAGGACCTACTACTAATGGTTTTTGAA 59.119 37.037 0.00 0.00 32.30 2.69
474 675 7.016858 ACAGGACCTACTACTAATGGTTTTTGA 59.983 37.037 0.00 0.00 32.30 2.69
475 676 7.166167 ACAGGACCTACTACTAATGGTTTTTG 58.834 38.462 0.00 0.00 32.30 2.44
476 677 7.325725 ACAGGACCTACTACTAATGGTTTTT 57.674 36.000 0.00 0.00 32.30 1.94
477 678 6.070366 GGACAGGACCTACTACTAATGGTTTT 60.070 42.308 0.00 0.00 32.30 2.43
478 679 5.424573 GGACAGGACCTACTACTAATGGTTT 59.575 44.000 0.00 0.00 32.30 3.27
479 680 4.961099 GGACAGGACCTACTACTAATGGTT 59.039 45.833 0.00 0.00 32.30 3.67
480 681 4.544683 GGACAGGACCTACTACTAATGGT 58.455 47.826 0.00 0.00 35.23 3.55
481 682 3.568853 CGGACAGGACCTACTACTAATGG 59.431 52.174 0.00 0.00 0.00 3.16
482 683 3.568853 CCGGACAGGACCTACTACTAATG 59.431 52.174 0.00 0.00 45.00 1.90
483 684 3.830121 CCGGACAGGACCTACTACTAAT 58.170 50.000 0.00 0.00 45.00 1.73
484 685 2.684927 GCCGGACAGGACCTACTACTAA 60.685 54.545 5.05 0.00 45.00 2.24
485 686 1.133976 GCCGGACAGGACCTACTACTA 60.134 57.143 5.05 0.00 45.00 1.82
486 687 0.395448 GCCGGACAGGACCTACTACT 60.395 60.000 5.05 0.00 45.00 2.57
487 688 1.722636 CGCCGGACAGGACCTACTAC 61.723 65.000 5.05 0.00 45.00 2.73
488 689 1.452651 CGCCGGACAGGACCTACTA 60.453 63.158 5.05 0.00 45.00 1.82
489 690 2.754658 CGCCGGACAGGACCTACT 60.755 66.667 5.05 0.00 45.00 2.57
490 691 3.834799 CCGCCGGACAGGACCTAC 61.835 72.222 5.05 0.00 45.00 3.18
512 713 3.368571 ACGAACCCGGGACTCGTC 61.369 66.667 34.57 20.30 41.76 4.20
513 714 3.677648 CACGAACCCGGGACTCGT 61.678 66.667 34.57 34.57 46.14 4.18
515 716 3.310860 ATGCACGAACCCGGGACTC 62.311 63.158 32.02 21.73 43.04 3.36
516 717 3.319198 ATGCACGAACCCGGGACT 61.319 61.111 32.02 14.53 43.04 3.85
517 718 3.124921 CATGCACGAACCCGGGAC 61.125 66.667 32.02 19.61 43.04 4.46
518 719 3.632080 ACATGCACGAACCCGGGA 61.632 61.111 32.02 1.69 43.04 5.14
519 720 3.430862 CACATGCACGAACCCGGG 61.431 66.667 22.25 22.25 43.30 5.73
520 721 4.101790 GCACATGCACGAACCCGG 62.102 66.667 0.00 0.00 41.59 5.73
530 731 0.318955 GTTGTCACCCTTGCACATGC 60.319 55.000 0.00 0.00 42.50 4.06
531 732 1.031235 TGTTGTCACCCTTGCACATG 58.969 50.000 0.00 0.00 0.00 3.21
532 733 1.888512 GATGTTGTCACCCTTGCACAT 59.111 47.619 0.00 0.00 0.00 3.21
533 734 1.317613 GATGTTGTCACCCTTGCACA 58.682 50.000 0.00 0.00 0.00 4.57
534 735 1.317613 TGATGTTGTCACCCTTGCAC 58.682 50.000 0.00 0.00 0.00 4.57
535 736 2.291209 ATGATGTTGTCACCCTTGCA 57.709 45.000 0.00 0.00 40.28 4.08
536 737 2.297033 ACAATGATGTTGTCACCCTTGC 59.703 45.455 0.00 0.00 40.28 4.01
537 738 4.164822 GACAATGATGTTGTCACCCTTG 57.835 45.455 14.17 0.00 45.89 3.61
544 745 2.553602 TGCACTGGACAATGATGTTGTC 59.446 45.455 11.41 11.41 45.89 3.18
545 746 2.585330 TGCACTGGACAATGATGTTGT 58.415 42.857 0.00 0.00 40.74 3.32
546 747 3.646611 TTGCACTGGACAATGATGTTG 57.353 42.857 0.00 0.00 40.74 3.33
547 748 4.562082 CAATTGCACTGGACAATGATGTT 58.438 39.130 0.00 0.00 40.74 2.71
548 749 3.615592 GCAATTGCACTGGACAATGATGT 60.616 43.478 25.36 0.00 41.20 3.06
549 750 2.927477 GCAATTGCACTGGACAATGATG 59.073 45.455 25.36 0.00 37.78 3.07
550 751 3.241067 GCAATTGCACTGGACAATGAT 57.759 42.857 25.36 0.00 37.78 2.45
551 752 2.728690 GCAATTGCACTGGACAATGA 57.271 45.000 25.36 0.00 37.78 2.57
562 763 7.383629 CTTCGATAAAGAGGCTGCAATTGCA 62.384 44.000 30.12 30.12 42.45 4.08
563 764 2.355756 TCGATAAAGAGGCTGCAATTGC 59.644 45.455 23.69 23.69 42.50 3.56
564 765 4.595116 CTTCGATAAAGAGGCTGCAATTG 58.405 43.478 0.00 0.00 37.12 2.32
565 766 3.065925 GCTTCGATAAAGAGGCTGCAATT 59.934 43.478 0.50 0.00 39.71 2.32
566 767 2.615912 GCTTCGATAAAGAGGCTGCAAT 59.384 45.455 0.50 0.00 39.71 3.56
567 768 2.009774 GCTTCGATAAAGAGGCTGCAA 58.990 47.619 0.50 0.00 39.71 4.08
568 769 1.656652 GCTTCGATAAAGAGGCTGCA 58.343 50.000 0.50 0.00 39.71 4.41
569 770 0.940833 GGCTTCGATAAAGAGGCTGC 59.059 55.000 0.00 0.00 42.07 5.25
570 771 2.611225 AGGCTTCGATAAAGAGGCTG 57.389 50.000 9.13 0.00 42.07 4.85
571 772 3.055094 TGAAAGGCTTCGATAAAGAGGCT 60.055 43.478 0.00 4.42 42.07 4.58
572 773 3.270877 TGAAAGGCTTCGATAAAGAGGC 58.729 45.455 0.00 0.00 41.73 4.70
573 774 4.938226 ACTTGAAAGGCTTCGATAAAGAGG 59.062 41.667 0.00 0.00 37.12 3.69
574 775 7.778470 ATACTTGAAAGGCTTCGATAAAGAG 57.222 36.000 0.00 0.00 37.12 2.85
575 776 8.561738 AAATACTTGAAAGGCTTCGATAAAGA 57.438 30.769 0.00 0.00 37.12 2.52
576 777 8.669243 AGAAATACTTGAAAGGCTTCGATAAAG 58.331 33.333 0.00 3.28 38.08 1.85
577 778 8.561738 AGAAATACTTGAAAGGCTTCGATAAA 57.438 30.769 0.00 0.00 33.94 1.40
578 779 8.561738 AAGAAATACTTGAAAGGCTTCGATAA 57.438 30.769 0.00 0.00 37.45 1.75
579 780 8.197988 GAAGAAATACTTGAAAGGCTTCGATA 57.802 34.615 0.00 0.00 39.13 2.92
580 781 7.078011 GAAGAAATACTTGAAAGGCTTCGAT 57.922 36.000 0.00 0.00 39.13 3.59
581 782 6.481954 GAAGAAATACTTGAAAGGCTTCGA 57.518 37.500 0.00 0.00 39.13 3.71
582 783 5.316770 CGAAGAAATACTTGAAAGGCTTCG 58.683 41.667 0.00 0.00 44.53 3.79
583 784 6.481954 TCGAAGAAATACTTGAAAGGCTTC 57.518 37.500 0.00 0.00 39.13 3.86
584 785 5.106515 GCTCGAAGAAATACTTGAAAGGCTT 60.107 40.000 0.00 0.00 39.13 4.35
585 786 4.393371 GCTCGAAGAAATACTTGAAAGGCT 59.607 41.667 0.00 0.00 39.13 4.58
586 787 4.154195 TGCTCGAAGAAATACTTGAAAGGC 59.846 41.667 0.00 0.00 39.13 4.35
587 788 5.639506 TCTGCTCGAAGAAATACTTGAAAGG 59.360 40.000 0.00 0.00 39.13 3.11
588 789 6.587990 TCTCTGCTCGAAGAAATACTTGAAAG 59.412 38.462 0.00 0.00 39.13 2.62
589 790 6.455647 TCTCTGCTCGAAGAAATACTTGAAA 58.544 36.000 0.00 0.00 39.13 2.69
590 791 6.025749 TCTCTGCTCGAAGAAATACTTGAA 57.974 37.500 0.00 0.00 39.13 2.69
591 792 5.644977 TCTCTGCTCGAAGAAATACTTGA 57.355 39.130 0.00 0.00 39.13 3.02
592 793 6.533012 TCAATCTCTGCTCGAAGAAATACTTG 59.467 38.462 0.00 0.00 39.13 3.16
593 794 6.634805 TCAATCTCTGCTCGAAGAAATACTT 58.365 36.000 0.00 0.00 42.03 2.24
594 795 6.214191 TCAATCTCTGCTCGAAGAAATACT 57.786 37.500 0.00 0.00 34.09 2.12
595 796 6.563753 GCATCAATCTCTGCTCGAAGAAATAC 60.564 42.308 0.00 0.00 34.09 1.89
596 797 5.464722 GCATCAATCTCTGCTCGAAGAAATA 59.535 40.000 0.00 0.00 34.09 1.40
597 798 4.272991 GCATCAATCTCTGCTCGAAGAAAT 59.727 41.667 0.00 0.00 34.09 2.17
598 799 3.620374 GCATCAATCTCTGCTCGAAGAAA 59.380 43.478 0.00 0.00 34.09 2.52
599 800 3.193263 GCATCAATCTCTGCTCGAAGAA 58.807 45.455 0.00 0.00 34.09 2.52
600 801 2.482664 GGCATCAATCTCTGCTCGAAGA 60.483 50.000 0.00 0.00 38.45 2.87
601 802 1.865970 GGCATCAATCTCTGCTCGAAG 59.134 52.381 0.00 0.00 38.45 3.79
602 803 1.803998 CGGCATCAATCTCTGCTCGAA 60.804 52.381 0.00 0.00 38.45 3.71
603 804 0.249197 CGGCATCAATCTCTGCTCGA 60.249 55.000 0.00 0.00 38.45 4.04
604 805 1.829349 GCGGCATCAATCTCTGCTCG 61.829 60.000 0.00 0.00 38.45 5.03
605 806 1.829349 CGCGGCATCAATCTCTGCTC 61.829 60.000 0.00 0.00 38.45 4.26
606 807 1.886313 CGCGGCATCAATCTCTGCT 60.886 57.895 0.00 0.00 38.45 4.24
607 808 1.431488 TTCGCGGCATCAATCTCTGC 61.431 55.000 6.13 0.00 37.66 4.26
608 809 0.580578 CTTCGCGGCATCAATCTCTG 59.419 55.000 6.13 0.00 0.00 3.35
609 810 0.461548 TCTTCGCGGCATCAATCTCT 59.538 50.000 6.13 0.00 0.00 3.10
610 811 1.260033 CTTCTTCGCGGCATCAATCTC 59.740 52.381 6.13 0.00 0.00 2.75
611 812 1.293924 CTTCTTCGCGGCATCAATCT 58.706 50.000 6.13 0.00 0.00 2.40
612 813 0.305922 CCTTCTTCGCGGCATCAATC 59.694 55.000 6.13 0.00 0.00 2.67
613 814 0.392998 ACCTTCTTCGCGGCATCAAT 60.393 50.000 6.13 0.00 0.00 2.57
614 815 1.003839 ACCTTCTTCGCGGCATCAA 60.004 52.632 6.13 0.00 0.00 2.57
615 816 1.741401 CACCTTCTTCGCGGCATCA 60.741 57.895 6.13 0.00 0.00 3.07
616 817 1.696832 GACACCTTCTTCGCGGCATC 61.697 60.000 6.13 0.00 0.00 3.91
617 818 1.741770 GACACCTTCTTCGCGGCAT 60.742 57.895 6.13 0.00 0.00 4.40
618 819 2.357034 GACACCTTCTTCGCGGCA 60.357 61.111 6.13 0.00 0.00 5.69
619 820 1.503818 TTTGACACCTTCTTCGCGGC 61.504 55.000 6.13 0.00 0.00 6.53
620 821 0.512952 CTTTGACACCTTCTTCGCGG 59.487 55.000 6.13 0.00 0.00 6.46
621 822 1.457303 CTCTTTGACACCTTCTTCGCG 59.543 52.381 0.00 0.00 0.00 5.87
622 823 2.755650 TCTCTTTGACACCTTCTTCGC 58.244 47.619 0.00 0.00 0.00 4.70
623 824 5.466728 TGAAATCTCTTTGACACCTTCTTCG 59.533 40.000 0.00 0.00 0.00 3.79
624 825 6.867662 TGAAATCTCTTTGACACCTTCTTC 57.132 37.500 0.00 0.00 0.00 2.87
625 826 7.830099 AATGAAATCTCTTTGACACCTTCTT 57.170 32.000 0.00 0.00 0.00 2.52
629 830 9.965902 AGTTATAATGAAATCTCTTTGACACCT 57.034 29.630 0.00 0.00 0.00 4.00
651 852 9.406113 GGAAGTAACTCCTATGACTAAGAGTTA 57.594 37.037 7.24 7.24 45.31 2.24
652 853 8.117312 AGGAAGTAACTCCTATGACTAAGAGTT 58.883 37.037 9.03 9.03 44.43 3.01
653 854 7.645002 AGGAAGTAACTCCTATGACTAAGAGT 58.355 38.462 0.00 0.00 44.43 3.24
666 867 7.554476 AGATGCAAGAAAATAGGAAGTAACTCC 59.446 37.037 0.00 0.00 35.51 3.85
667 868 8.499403 AGATGCAAGAAAATAGGAAGTAACTC 57.501 34.615 0.00 0.00 0.00 3.01
668 869 8.870075 AAGATGCAAGAAAATAGGAAGTAACT 57.130 30.769 0.00 0.00 0.00 2.24
670 871 9.396022 CCTAAGATGCAAGAAAATAGGAAGTAA 57.604 33.333 0.00 0.00 32.05 2.24
671 872 8.548877 ACCTAAGATGCAAGAAAATAGGAAGTA 58.451 33.333 14.45 0.00 34.07 2.24
672 873 7.406104 ACCTAAGATGCAAGAAAATAGGAAGT 58.594 34.615 14.45 0.00 34.07 3.01
673 874 7.872113 ACCTAAGATGCAAGAAAATAGGAAG 57.128 36.000 14.45 0.00 34.07 3.46
674 875 7.888021 TGAACCTAAGATGCAAGAAAATAGGAA 59.112 33.333 14.45 2.51 34.07 3.36
675 876 7.402054 TGAACCTAAGATGCAAGAAAATAGGA 58.598 34.615 14.45 0.00 34.07 2.94
676 877 7.630242 TGAACCTAAGATGCAAGAAAATAGG 57.370 36.000 0.00 0.03 35.62 2.57
680 881 9.912634 CTTATTTGAACCTAAGATGCAAGAAAA 57.087 29.630 0.00 0.00 0.00 2.29
681 882 9.077885 ACTTATTTGAACCTAAGATGCAAGAAA 57.922 29.630 0.00 0.00 0.00 2.52
682 883 8.514594 CACTTATTTGAACCTAAGATGCAAGAA 58.485 33.333 0.00 0.00 0.00 2.52
683 884 7.665559 ACACTTATTTGAACCTAAGATGCAAGA 59.334 33.333 0.00 0.00 0.00 3.02
684 885 7.820648 ACACTTATTTGAACCTAAGATGCAAG 58.179 34.615 0.00 0.00 0.00 4.01
685 886 7.759489 ACACTTATTTGAACCTAAGATGCAA 57.241 32.000 0.00 0.00 0.00 4.08
686 887 8.892723 CATACACTTATTTGAACCTAAGATGCA 58.107 33.333 0.00 0.00 0.00 3.96
687 888 8.893727 ACATACACTTATTTGAACCTAAGATGC 58.106 33.333 1.91 0.00 0.00 3.91
689 890 9.959721 ACACATACACTTATTTGAACCTAAGAT 57.040 29.630 1.91 0.00 0.00 2.40
702 903 9.865321 ACTCGTAACAATTACACATACACTTAT 57.135 29.630 0.11 0.00 35.89 1.73
704 905 9.865321 ATACTCGTAACAATTACACATACACTT 57.135 29.630 0.11 0.00 35.89 3.16
705 906 9.297586 CATACTCGTAACAATTACACATACACT 57.702 33.333 0.11 0.00 35.89 3.55
706 907 9.292846 TCATACTCGTAACAATTACACATACAC 57.707 33.333 0.11 0.00 35.89 2.90
707 908 9.857957 TTCATACTCGTAACAATTACACATACA 57.142 29.630 0.11 0.00 35.89 2.29
750 951 9.582431 CGTCCTAGTTTCTTTGAGTCATATAAA 57.418 33.333 0.00 0.00 0.00 1.40
751 952 8.963725 TCGTCCTAGTTTCTTTGAGTCATATAA 58.036 33.333 0.00 0.00 0.00 0.98
752 953 8.515695 TCGTCCTAGTTTCTTTGAGTCATATA 57.484 34.615 0.00 0.00 0.00 0.86
753 954 7.406031 TCGTCCTAGTTTCTTTGAGTCATAT 57.594 36.000 0.00 0.00 0.00 1.78
754 955 6.829229 TCGTCCTAGTTTCTTTGAGTCATA 57.171 37.500 0.00 0.00 0.00 2.15
755 956 5.723672 TCGTCCTAGTTTCTTTGAGTCAT 57.276 39.130 0.00 0.00 0.00 3.06
756 957 5.301045 TCTTCGTCCTAGTTTCTTTGAGTCA 59.699 40.000 0.00 0.00 0.00 3.41
757 958 5.770417 TCTTCGTCCTAGTTTCTTTGAGTC 58.230 41.667 0.00 0.00 0.00 3.36
758 959 5.786264 TCTTCGTCCTAGTTTCTTTGAGT 57.214 39.130 0.00 0.00 0.00 3.41
759 960 7.540299 ACTATCTTCGTCCTAGTTTCTTTGAG 58.460 38.462 0.00 0.00 0.00 3.02
760 961 7.463961 ACTATCTTCGTCCTAGTTTCTTTGA 57.536 36.000 0.00 0.00 0.00 2.69
761 962 7.599245 ACAACTATCTTCGTCCTAGTTTCTTTG 59.401 37.037 0.00 0.00 34.35 2.77
762 963 7.668492 ACAACTATCTTCGTCCTAGTTTCTTT 58.332 34.615 0.00 0.00 34.35 2.52
763 964 7.229581 ACAACTATCTTCGTCCTAGTTTCTT 57.770 36.000 0.00 0.00 34.35 2.52
764 965 6.837471 ACAACTATCTTCGTCCTAGTTTCT 57.163 37.500 0.00 0.00 34.35 2.52
765 966 8.025445 TGTTACAACTATCTTCGTCCTAGTTTC 58.975 37.037 0.00 0.00 34.35 2.78
766 967 7.889469 TGTTACAACTATCTTCGTCCTAGTTT 58.111 34.615 0.00 0.00 34.35 2.66
767 968 7.458409 TGTTACAACTATCTTCGTCCTAGTT 57.542 36.000 0.00 0.00 36.41 2.24
768 969 7.481642 CATGTTACAACTATCTTCGTCCTAGT 58.518 38.462 0.00 0.00 0.00 2.57
769 970 6.418226 GCATGTTACAACTATCTTCGTCCTAG 59.582 42.308 0.00 0.00 0.00 3.02
770 971 6.127563 TGCATGTTACAACTATCTTCGTCCTA 60.128 38.462 0.00 0.00 0.00 2.94
771 972 5.109903 GCATGTTACAACTATCTTCGTCCT 58.890 41.667 0.00 0.00 0.00 3.85
772 973 4.868171 TGCATGTTACAACTATCTTCGTCC 59.132 41.667 0.00 0.00 0.00 4.79
773 974 5.005779 CCTGCATGTTACAACTATCTTCGTC 59.994 44.000 0.00 0.00 0.00 4.20
774 975 4.870426 CCTGCATGTTACAACTATCTTCGT 59.130 41.667 0.00 0.00 0.00 3.85
775 976 5.005779 GTCCTGCATGTTACAACTATCTTCG 59.994 44.000 0.00 0.00 0.00 3.79
776 977 5.294552 GGTCCTGCATGTTACAACTATCTTC 59.705 44.000 0.00 0.00 0.00 2.87
777 978 5.045578 AGGTCCTGCATGTTACAACTATCTT 60.046 40.000 0.00 0.00 0.00 2.40
778 979 4.471386 AGGTCCTGCATGTTACAACTATCT 59.529 41.667 0.00 0.00 0.00 1.98
779 980 4.770795 AGGTCCTGCATGTTACAACTATC 58.229 43.478 0.00 0.00 0.00 2.08
780 981 4.680708 CGAGGTCCTGCATGTTACAACTAT 60.681 45.833 0.00 0.00 0.00 2.12
781 982 3.368013 CGAGGTCCTGCATGTTACAACTA 60.368 47.826 0.00 0.00 0.00 2.24
782 983 2.612972 CGAGGTCCTGCATGTTACAACT 60.613 50.000 0.00 0.00 0.00 3.16
783 984 1.732259 CGAGGTCCTGCATGTTACAAC 59.268 52.381 0.00 0.00 0.00 3.32
784 985 1.621317 TCGAGGTCCTGCATGTTACAA 59.379 47.619 0.00 0.00 0.00 2.41
785 986 1.204704 CTCGAGGTCCTGCATGTTACA 59.795 52.381 3.91 0.00 0.00 2.41
786 987 1.927895 CTCGAGGTCCTGCATGTTAC 58.072 55.000 3.91 0.00 0.00 2.50
787 988 0.175760 GCTCGAGGTCCTGCATGTTA 59.824 55.000 15.58 0.00 0.00 2.41
788 989 1.078848 GCTCGAGGTCCTGCATGTT 60.079 57.895 15.58 0.00 0.00 2.71
789 990 1.620739 ATGCTCGAGGTCCTGCATGT 61.621 55.000 15.58 0.00 43.41 3.21
790 991 1.145598 ATGCTCGAGGTCCTGCATG 59.854 57.895 15.58 0.00 43.41 4.06
791 992 1.145598 CATGCTCGAGGTCCTGCAT 59.854 57.895 15.58 8.19 45.57 3.96
792 993 2.580815 CATGCTCGAGGTCCTGCA 59.419 61.111 15.58 5.83 39.83 4.41
793 994 2.894387 GCATGCTCGAGGTCCTGC 60.894 66.667 15.58 9.35 0.00 4.85
794 995 1.521010 CAGCATGCTCGAGGTCCTG 60.521 63.158 19.68 0.00 0.00 3.86
795 996 2.729479 CCAGCATGCTCGAGGTCCT 61.729 63.158 19.68 0.00 31.97 3.85
796 997 2.202987 CCAGCATGCTCGAGGTCC 60.203 66.667 19.68 0.00 31.97 4.46
797 998 2.202987 CCCAGCATGCTCGAGGTC 60.203 66.667 19.68 0.00 31.97 3.85
798 999 3.005539 ACCCAGCATGCTCGAGGT 61.006 61.111 19.68 21.27 31.97 3.85
799 1000 2.513204 CACCCAGCATGCTCGAGG 60.513 66.667 19.68 20.59 31.97 4.63
800 1001 1.376424 AACACCCAGCATGCTCGAG 60.376 57.895 19.68 11.91 31.97 4.04
801 1002 1.672030 CAACACCCAGCATGCTCGA 60.672 57.895 19.68 0.00 31.97 4.04
802 1003 1.915614 GACAACACCCAGCATGCTCG 61.916 60.000 19.68 12.09 31.97 5.03
859 1074 5.986135 GGTACTATCATCTGTTTAGGTGCAG 59.014 44.000 0.00 0.00 34.92 4.41
877 1092 6.092748 GGTTTTCGAGTCAAATACGGTACTA 58.907 40.000 0.00 0.00 0.00 1.82
878 1093 4.925646 GGTTTTCGAGTCAAATACGGTACT 59.074 41.667 0.00 0.00 0.00 2.73
913 1128 1.385756 GGGAGCTGTAGTCGGACTCC 61.386 65.000 15.05 8.55 39.85 3.85
979 1194 2.676016 ATTGTGTTGTTGGCGGTGCG 62.676 55.000 0.00 0.00 0.00 5.34
987 1202 8.131100 AGATCTCTTGTTGTAATTGTGTTGTTG 58.869 33.333 0.00 0.00 0.00 3.33
988 1203 8.225603 AGATCTCTTGTTGTAATTGTGTTGTT 57.774 30.769 0.00 0.00 0.00 2.83
1029 1251 4.729458 GCATATCTAGATCTCGGTCGCTTC 60.729 50.000 8.95 0.00 0.00 3.86
1036 1267 2.478709 GCGGTGCATATCTAGATCTCGG 60.479 54.545 8.95 2.39 0.00 4.63
1273 1864 2.431942 GGGTAGTGCACGTCCACG 60.432 66.667 26.01 0.00 46.33 4.94
1468 2059 3.834447 CTTGTCGTCGTGCGGGTCA 62.834 63.158 0.00 0.00 41.72 4.02
1744 3214 1.226859 CATGGTGGCGACGTCGTAT 60.227 57.895 35.48 20.04 42.22 3.06
1886 3356 0.958382 TGCCCGTCCTTCAAAATCCG 60.958 55.000 0.00 0.00 0.00 4.18
1954 3425 1.135139 CTGATCGACCGTGGAAGATGT 59.865 52.381 0.00 0.00 0.00 3.06
1995 3477 4.100653 TGCACATTGGAATTCTTGACCAAA 59.899 37.500 5.23 0.00 44.91 3.28
2123 3615 7.882179 AGAAAAACAAACGCTTGACCTATAAT 58.118 30.769 5.39 0.00 36.33 1.28
2124 3616 7.012515 TGAGAAAAACAAACGCTTGACCTATAA 59.987 33.333 5.39 0.00 36.33 0.98
2265 3783 6.795114 CACACGATTGAAGGTTGTTTATACAC 59.205 38.462 0.00 0.00 32.98 2.90
2279 3797 2.984471 GCGTAGAAGTCACACGATTGAA 59.016 45.455 8.98 0.00 37.89 2.69
2284 3802 2.495409 TTTGCGTAGAAGTCACACGA 57.505 45.000 8.98 0.00 37.89 4.35
2290 3808 4.389077 AGTGCTTGTATTTGCGTAGAAGTC 59.611 41.667 0.00 0.00 30.12 3.01
2291 3809 4.152402 CAGTGCTTGTATTTGCGTAGAAGT 59.848 41.667 0.00 0.00 30.12 3.01
2407 3949 1.377987 GGTAAGCGTTGGATGGCCA 60.378 57.895 8.56 8.56 44.17 5.36
2467 4009 5.369187 CATGAATTATGTCGTCTTCGCATC 58.631 41.667 0.00 0.00 36.16 3.91
2894 4684 5.347635 CACAGACATCTTTTGAAATGCATGG 59.652 40.000 0.00 0.00 0.00 3.66
2897 4687 5.067544 TGTCACAGACATCTTTTGAAATGCA 59.932 36.000 0.00 0.00 37.67 3.96
2898 4688 5.522456 TGTCACAGACATCTTTTGAAATGC 58.478 37.500 0.00 0.00 37.67 3.56
2954 4745 4.023536 ACATTTTTCAAACTACGCGGTCAT 60.024 37.500 12.47 0.00 0.00 3.06
2955 4746 3.312973 ACATTTTTCAAACTACGCGGTCA 59.687 39.130 12.47 0.00 0.00 4.02
2956 4747 3.880610 ACATTTTTCAAACTACGCGGTC 58.119 40.909 12.47 0.00 0.00 4.79
2957 4748 3.974871 ACATTTTTCAAACTACGCGGT 57.025 38.095 12.47 0.00 0.00 5.68
2959 4750 3.666797 GGGAACATTTTTCAAACTACGCG 59.333 43.478 3.53 3.53 0.00 6.01
2960 4751 4.866921 AGGGAACATTTTTCAAACTACGC 58.133 39.130 0.00 0.00 0.00 4.42
2961 4752 7.812648 TGATAGGGAACATTTTTCAAACTACG 58.187 34.615 0.00 0.00 0.00 3.51
3217 5008 7.375053 TCGGTTTTCTATCAATTTTTCCTTGG 58.625 34.615 0.00 0.00 0.00 3.61
3224 5015 9.769093 CGTTTCTATCGGTTTTCTATCAATTTT 57.231 29.630 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.