Multiple sequence alignment - TraesCS3B01G445200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G445200 chr3B 100.000 3336 0 0 1 3336 685040317 685036982 0.000000e+00 6161.0
1 TraesCS3B01G445200 chr3B 97.554 736 18 0 2601 3336 685032123 685031388 0.000000e+00 1260.0
2 TraesCS3B01G445200 chr3B 97.147 736 21 0 2601 3336 805321015 805320280 0.000000e+00 1243.0
3 TraesCS3B01G445200 chr3B 96.875 736 22 1 2601 3336 805326606 805325872 0.000000e+00 1230.0
4 TraesCS3B01G445200 chr3B 83.906 1280 155 29 1048 2291 757807620 757808884 0.000000e+00 1175.0
5 TraesCS3B01G445200 chr3B 83.091 1236 161 30 1099 2305 757739782 757738566 0.000000e+00 1081.0
6 TraesCS3B01G445200 chr3B 82.320 1267 182 32 1048 2289 757734144 757735393 0.000000e+00 1061.0
7 TraesCS3B01G445200 chr3B 80.741 1241 201 28 1071 2289 757773415 757772191 0.000000e+00 933.0
8 TraesCS3B01G445200 chr3B 97.382 191 5 0 1 191 217794051 217794241 3.210000e-85 326.0
9 TraesCS3B01G445200 chr3B 97.382 191 5 0 1 191 768297531 768297721 3.210000e-85 326.0
10 TraesCS3B01G445200 chr3B 91.129 124 11 0 2475 2598 685016750 685016627 5.720000e-38 169.0
11 TraesCS3B01G445200 chr3A 95.361 1660 62 7 691 2337 655637450 655635793 0.000000e+00 2625.0
12 TraesCS3B01G445200 chr3A 79.918 1713 214 66 670 2289 703394736 703396411 0.000000e+00 1138.0
13 TraesCS3B01G445200 chr3A 83.669 1243 163 26 1071 2290 703304281 703303056 0.000000e+00 1134.0
14 TraesCS3B01G445200 chr3A 81.797 1269 186 35 1048 2289 703270275 703271525 0.000000e+00 1022.0
15 TraesCS3B01G445200 chr3D 95.577 1379 50 3 1045 2412 520191930 520190552 0.000000e+00 2198.0
16 TraesCS3B01G445200 chr3D 80.319 1692 198 62 703 2291 570558786 570560445 0.000000e+00 1155.0
17 TraesCS3B01G445200 chr3D 82.306 1266 185 29 1048 2289 570393678 570394928 0.000000e+00 1061.0
18 TraesCS3B01G445200 chr3D 80.422 1231 193 33 1071 2277 570496372 570495166 0.000000e+00 894.0
19 TraesCS3B01G445200 chr3D 79.299 1227 191 33 1051 2256 570379584 570380768 0.000000e+00 800.0
20 TraesCS3B01G445200 chr3D 79.504 1210 173 45 1077 2256 570281060 570282224 0.000000e+00 791.0
21 TraesCS3B01G445200 chr3D 95.560 473 19 2 197 668 69791505 69791034 0.000000e+00 756.0
22 TraesCS3B01G445200 chr3D 78.606 1234 190 41 1051 2256 570328429 570329616 0.000000e+00 749.0
23 TraesCS3B01G445200 chr3D 82.209 652 85 16 1662 2290 570400565 570399922 1.760000e-147 532.0
24 TraesCS3B01G445200 chr3D 84.962 532 72 8 1072 1599 570401328 570400801 1.760000e-147 532.0
25 TraesCS3B01G445200 chr3D 94.667 300 8 4 670 967 520192357 520192064 3.030000e-125 459.0
26 TraesCS3B01G445200 chr6B 97.015 737 21 1 2601 3336 146700945 146701681 0.000000e+00 1238.0
27 TraesCS3B01G445200 chr6B 96.467 736 26 0 2601 3336 146706397 146707132 0.000000e+00 1216.0
28 TraesCS3B01G445200 chr6B 96.196 736 28 0 2601 3336 574867326 574866591 0.000000e+00 1205.0
29 TraesCS3B01G445200 chr6B 95.924 736 30 0 2601 3336 186558745 186559480 0.000000e+00 1194.0
30 TraesCS3B01G445200 chr6B 95.652 736 30 1 2601 3336 574861893 574861160 0.000000e+00 1181.0
31 TraesCS3B01G445200 chr6B 95.388 477 13 3 200 668 550754897 550754422 0.000000e+00 750.0
32 TraesCS3B01G445200 chr6B 96.280 457 16 1 197 653 662212864 662212409 0.000000e+00 749.0
33 TraesCS3B01G445200 chr6B 88.618 123 13 1 2475 2597 429158935 429159056 7.460000e-32 148.0
34 TraesCS3B01G445200 chr5B 96.875 736 23 0 2601 3336 512501572 512500837 0.000000e+00 1232.0
35 TraesCS3B01G445200 chr5B 98.249 457 7 1 197 653 536223707 536223252 0.000000e+00 798.0
36 TraesCS3B01G445200 chr5B 95.137 473 21 2 197 668 60883943 60883472 0.000000e+00 745.0
37 TraesCS3B01G445200 chr5B 97.917 192 4 0 1 192 536224984 536224793 1.920000e-87 333.0
38 TraesCS3B01G445200 chr5B 88.148 135 8 2 542 668 704975092 704975226 1.600000e-33 154.0
39 TraesCS3B01G445200 chr2B 96.937 457 13 1 197 653 9708092 9707637 0.000000e+00 765.0
40 TraesCS3B01G445200 chr2B 97.396 192 5 0 1 192 635526666 635526857 8.920000e-86 327.0
41 TraesCS3B01G445200 chr2B 97.396 192 5 0 1 192 769062604 769062413 8.920000e-86 327.0
42 TraesCS3B01G445200 chr2B 93.333 120 8 0 2476 2595 87759962 87760081 9.510000e-41 178.0
43 TraesCS3B01G445200 chr2B 89.683 126 13 0 2475 2600 87702609 87702484 9.580000e-36 161.0
44 TraesCS3B01G445200 chr2B 81.022 137 14 6 542 668 295319573 295319707 7.620000e-17 99.0
45 TraesCS3B01G445200 chr1B 95.258 485 14 3 197 673 328666207 328666690 0.000000e+00 760.0
46 TraesCS3B01G445200 chr1B 94.340 477 25 2 197 672 629317919 629318394 0.000000e+00 730.0
47 TraesCS3B01G445200 chr7A 96.070 458 16 2 197 653 504211026 504210570 0.000000e+00 745.0
48 TraesCS3B01G445200 chr7A 89.256 121 13 0 2475 2595 485521877 485521757 5.760000e-33 152.0
49 TraesCS3B01G445200 chr1A 92.961 483 24 4 200 674 256979365 256978885 0.000000e+00 695.0
50 TraesCS3B01G445200 chr1A 78.986 138 16 7 542 668 59723216 59723081 7.670000e-12 82.4
51 TraesCS3B01G445200 chr7B 97.917 192 4 0 1 192 149603132 149603323 1.920000e-87 333.0
52 TraesCS3B01G445200 chr7B 87.302 126 12 3 2475 2600 645134150 645134029 1.250000e-29 141.0
53 TraesCS3B01G445200 chr4B 97.396 192 5 0 1 192 37302367 37302176 8.920000e-86 327.0
54 TraesCS3B01G445200 chr4A 97.396 192 5 0 1 192 740772804 740772995 8.920000e-86 327.0
55 TraesCS3B01G445200 chrUn 97.382 191 5 0 1 191 348689331 348689521 3.210000e-85 326.0
56 TraesCS3B01G445200 chr7D 88.018 217 26 0 1525 1741 565060544 565060328 1.190000e-64 257.0
57 TraesCS3B01G445200 chr7D 91.870 123 10 0 2475 2597 465915100 465914978 4.420000e-39 172.0
58 TraesCS3B01G445200 chr1D 91.057 123 11 0 2475 2597 477192988 477192866 2.060000e-37 167.0
59 TraesCS3B01G445200 chr1D 89.683 126 12 1 2472 2597 477198058 477197934 3.440000e-35 159.0
60 TraesCS3B01G445200 chr5A 90.099 101 2 1 576 668 624924355 624924455 1.260000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G445200 chr3B 685036982 685040317 3335 True 6161.0 6161 100.0000 1 3336 1 chr3B.!!$R3 3335
1 TraesCS3B01G445200 chr3B 685031388 685032123 735 True 1260.0 1260 97.5540 2601 3336 1 chr3B.!!$R2 735
2 TraesCS3B01G445200 chr3B 805320280 805321015 735 True 1243.0 1243 97.1470 2601 3336 1 chr3B.!!$R6 735
3 TraesCS3B01G445200 chr3B 805325872 805326606 734 True 1230.0 1230 96.8750 2601 3336 1 chr3B.!!$R7 735
4 TraesCS3B01G445200 chr3B 757807620 757808884 1264 False 1175.0 1175 83.9060 1048 2291 1 chr3B.!!$F3 1243
5 TraesCS3B01G445200 chr3B 757738566 757739782 1216 True 1081.0 1081 83.0910 1099 2305 1 chr3B.!!$R4 1206
6 TraesCS3B01G445200 chr3B 757734144 757735393 1249 False 1061.0 1061 82.3200 1048 2289 1 chr3B.!!$F2 1241
7 TraesCS3B01G445200 chr3B 757772191 757773415 1224 True 933.0 933 80.7410 1071 2289 1 chr3B.!!$R5 1218
8 TraesCS3B01G445200 chr3A 655635793 655637450 1657 True 2625.0 2625 95.3610 691 2337 1 chr3A.!!$R1 1646
9 TraesCS3B01G445200 chr3A 703394736 703396411 1675 False 1138.0 1138 79.9180 670 2289 1 chr3A.!!$F2 1619
10 TraesCS3B01G445200 chr3A 703303056 703304281 1225 True 1134.0 1134 83.6690 1071 2290 1 chr3A.!!$R2 1219
11 TraesCS3B01G445200 chr3A 703270275 703271525 1250 False 1022.0 1022 81.7970 1048 2289 1 chr3A.!!$F1 1241
12 TraesCS3B01G445200 chr3D 520190552 520192357 1805 True 1328.5 2198 95.1220 670 2412 2 chr3D.!!$R3 1742
13 TraesCS3B01G445200 chr3D 570558786 570560445 1659 False 1155.0 1155 80.3190 703 2291 1 chr3D.!!$F5 1588
14 TraesCS3B01G445200 chr3D 570393678 570394928 1250 False 1061.0 1061 82.3060 1048 2289 1 chr3D.!!$F4 1241
15 TraesCS3B01G445200 chr3D 570495166 570496372 1206 True 894.0 894 80.4220 1071 2277 1 chr3D.!!$R2 1206
16 TraesCS3B01G445200 chr3D 570379584 570380768 1184 False 800.0 800 79.2990 1051 2256 1 chr3D.!!$F3 1205
17 TraesCS3B01G445200 chr3D 570281060 570282224 1164 False 791.0 791 79.5040 1077 2256 1 chr3D.!!$F1 1179
18 TraesCS3B01G445200 chr3D 570328429 570329616 1187 False 749.0 749 78.6060 1051 2256 1 chr3D.!!$F2 1205
19 TraesCS3B01G445200 chr3D 570399922 570401328 1406 True 532.0 532 83.5855 1072 2290 2 chr3D.!!$R4 1218
20 TraesCS3B01G445200 chr6B 146700945 146701681 736 False 1238.0 1238 97.0150 2601 3336 1 chr6B.!!$F1 735
21 TraesCS3B01G445200 chr6B 146706397 146707132 735 False 1216.0 1216 96.4670 2601 3336 1 chr6B.!!$F2 735
22 TraesCS3B01G445200 chr6B 574866591 574867326 735 True 1205.0 1205 96.1960 2601 3336 1 chr6B.!!$R3 735
23 TraesCS3B01G445200 chr6B 186558745 186559480 735 False 1194.0 1194 95.9240 2601 3336 1 chr6B.!!$F3 735
24 TraesCS3B01G445200 chr6B 574861160 574861893 733 True 1181.0 1181 95.6520 2601 3336 1 chr6B.!!$R2 735
25 TraesCS3B01G445200 chr5B 512500837 512501572 735 True 1232.0 1232 96.8750 2601 3336 1 chr5B.!!$R2 735
26 TraesCS3B01G445200 chr5B 536223252 536224984 1732 True 565.5 798 98.0830 1 653 2 chr5B.!!$R3 652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
195 196 0.328592 GGACCTCCTCCAAAACCTCC 59.671 60.0 0.0 0.0 39.21 4.30 F
1183 2393 0.546598 CTACACCATCCCCTTCCACC 59.453 60.0 0.0 0.0 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1968 3375 1.153549 GTAGCACAGCTCGAAGGGG 60.154 63.158 0.0 0.0 40.44 4.79 R
2468 3895 0.035439 AGGGTCGCTAACATGGTTGG 60.035 55.000 0.0 0.0 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.436824 GGCTTCCTCCAAGGTCGC 60.437 66.667 0.00 0.00 36.53 5.19
194 195 3.959433 GGACCTCCTCCAAAACCTC 57.041 57.895 0.00 0.00 39.21 3.85
195 196 0.328592 GGACCTCCTCCAAAACCTCC 59.671 60.000 0.00 0.00 39.21 4.30
219 1301 1.719780 CGTGTTGCGTCCTCTACTTTC 59.280 52.381 0.00 0.00 35.54 2.62
257 1339 0.973632 AGTAGTTGTGGTGATGGCGA 59.026 50.000 0.00 0.00 0.00 5.54
342 1424 1.781025 CGCCGAGGTGCAACTTTTGA 61.781 55.000 5.31 0.00 36.74 2.69
364 1446 1.410517 GATGTTGCCGATGAGAGGAGA 59.589 52.381 0.00 0.00 0.00 3.71
378 1460 7.441760 CGATGAGAGGAGAAAGATGATGATTTT 59.558 37.037 0.00 0.00 0.00 1.82
406 1488 9.450807 GTGATGTAAACTATTAAACCATGCATC 57.549 33.333 0.00 0.00 0.00 3.91
580 1662 1.340114 GGGTTCTAGTCTTTGCCCCTG 60.340 57.143 0.00 0.00 0.00 4.45
653 1735 5.752650 ACTGCTATAAGGGTTTAAGGGTTC 58.247 41.667 0.00 0.00 0.00 3.62
654 1736 5.491439 ACTGCTATAAGGGTTTAAGGGTTCT 59.509 40.000 0.00 0.00 0.00 3.01
655 1737 6.675303 ACTGCTATAAGGGTTTAAGGGTTCTA 59.325 38.462 0.00 0.00 0.00 2.10
656 1738 6.892485 TGCTATAAGGGTTTAAGGGTTCTAC 58.108 40.000 0.00 0.00 0.00 2.59
657 1739 6.675303 TGCTATAAGGGTTTAAGGGTTCTACT 59.325 38.462 0.00 0.00 0.00 2.57
658 1740 7.845800 TGCTATAAGGGTTTAAGGGTTCTACTA 59.154 37.037 0.00 0.00 0.00 1.82
659 1741 8.366401 GCTATAAGGGTTTAAGGGTTCTACTAG 58.634 40.741 0.00 0.00 0.00 2.57
660 1742 9.431690 CTATAAGGGTTTAAGGGTTCTACTAGT 57.568 37.037 0.00 0.00 0.00 2.57
662 1744 9.788815 ATAAGGGTTTAAGGGTTCTACTAGTAA 57.211 33.333 3.76 0.00 0.00 2.24
663 1745 8.691194 AAGGGTTTAAGGGTTCTACTAGTAAT 57.309 34.615 3.76 0.00 0.00 1.89
664 1746 8.087303 AGGGTTTAAGGGTTCTACTAGTAATG 57.913 38.462 3.76 0.00 0.00 1.90
665 1747 6.765036 GGGTTTAAGGGTTCTACTAGTAATGC 59.235 42.308 3.76 0.00 0.00 3.56
666 1748 7.365384 GGGTTTAAGGGTTCTACTAGTAATGCT 60.365 40.741 3.76 0.00 0.00 3.79
667 1749 7.710044 GGTTTAAGGGTTCTACTAGTAATGCTC 59.290 40.741 3.76 0.00 0.00 4.26
668 1750 5.873146 AAGGGTTCTACTAGTAATGCTCC 57.127 43.478 3.76 3.01 0.00 4.70
805 1887 3.649981 CCACAGGGATGGACAGATAGATT 59.350 47.826 0.00 0.00 43.02 2.40
815 1897 4.141413 TGGACAGATAGATTGAACATGGGG 60.141 45.833 0.00 0.00 0.00 4.96
952 2073 3.123804 CCATTAATTCCGGTGTCGAGAG 58.876 50.000 0.00 0.00 39.00 3.20
953 2074 3.181479 CCATTAATTCCGGTGTCGAGAGA 60.181 47.826 0.00 0.00 39.00 3.10
967 2093 2.239907 TCGAGAGAGATCTCACCTCCAA 59.760 50.000 26.14 17.68 45.21 3.53
1023 2181 3.555956 AGTCGCAAGTTACAGTTCAACAG 59.444 43.478 0.00 0.00 39.48 3.16
1183 2393 0.546598 CTACACCATCCCCTTCCACC 59.453 60.000 0.00 0.00 0.00 4.61
2265 3678 1.676967 CAGGCTGCCCTTCTTCACC 60.677 63.158 16.57 0.00 40.33 4.02
2294 3707 3.259123 GGCCACTTCAATTTCACCAAGAT 59.741 43.478 0.00 0.00 0.00 2.40
2298 3714 4.216257 CACTTCAATTTCACCAAGATCGGT 59.784 41.667 0.00 0.00 41.07 4.69
2337 3753 7.981225 TGCTGCCTTTTCTTTGGATAATAAATC 59.019 33.333 0.00 0.00 0.00 2.17
2338 3754 8.200120 GCTGCCTTTTCTTTGGATAATAAATCT 58.800 33.333 0.00 0.00 0.00 2.40
2339 3755 9.525409 CTGCCTTTTCTTTGGATAATAAATCTG 57.475 33.333 0.00 0.00 0.00 2.90
2375 3802 6.049955 ACTAAAGTGCTACTGGATGCTAAA 57.950 37.500 0.00 0.00 0.00 1.85
2377 3804 5.629079 AAAGTGCTACTGGATGCTAAAAC 57.371 39.130 0.00 0.00 0.00 2.43
2415 3842 2.618053 GTAGCCAGCTACATTTGTCGT 58.382 47.619 21.91 0.00 45.90 4.34
2416 3843 1.726853 AGCCAGCTACATTTGTCGTC 58.273 50.000 0.00 0.00 0.00 4.20
2417 3844 1.001974 AGCCAGCTACATTTGTCGTCA 59.998 47.619 0.00 0.00 0.00 4.35
2418 3845 1.128692 GCCAGCTACATTTGTCGTCAC 59.871 52.381 0.00 0.00 0.00 3.67
2419 3846 1.390123 CCAGCTACATTTGTCGTCACG 59.610 52.381 0.00 0.00 0.00 4.35
2420 3847 1.390123 CAGCTACATTTGTCGTCACGG 59.610 52.381 0.00 0.00 0.00 4.94
2421 3848 1.000506 AGCTACATTTGTCGTCACGGT 59.999 47.619 0.00 0.00 0.00 4.83
2422 3849 1.796459 GCTACATTTGTCGTCACGGTT 59.204 47.619 0.00 0.00 0.00 4.44
2423 3850 2.159881 GCTACATTTGTCGTCACGGTTC 60.160 50.000 0.00 0.00 0.00 3.62
2424 3851 1.942677 ACATTTGTCGTCACGGTTCA 58.057 45.000 0.00 0.00 0.00 3.18
2425 3852 2.489971 ACATTTGTCGTCACGGTTCAT 58.510 42.857 0.00 0.00 0.00 2.57
2426 3853 2.478894 ACATTTGTCGTCACGGTTCATC 59.521 45.455 0.00 0.00 0.00 2.92
2427 3854 1.504359 TTTGTCGTCACGGTTCATCC 58.496 50.000 0.00 0.00 0.00 3.51
2428 3855 0.320073 TTGTCGTCACGGTTCATCCC 60.320 55.000 0.00 0.00 0.00 3.85
2429 3856 1.290955 GTCGTCACGGTTCATCCCA 59.709 57.895 0.00 0.00 0.00 4.37
2430 3857 0.108329 GTCGTCACGGTTCATCCCAT 60.108 55.000 0.00 0.00 0.00 4.00
2431 3858 0.611200 TCGTCACGGTTCATCCCATT 59.389 50.000 0.00 0.00 0.00 3.16
2432 3859 1.002659 TCGTCACGGTTCATCCCATTT 59.997 47.619 0.00 0.00 0.00 2.32
2433 3860 1.810151 CGTCACGGTTCATCCCATTTT 59.190 47.619 0.00 0.00 0.00 1.82
2434 3861 2.414029 CGTCACGGTTCATCCCATTTTG 60.414 50.000 0.00 0.00 0.00 2.44
2435 3862 1.543802 TCACGGTTCATCCCATTTTGC 59.456 47.619 0.00 0.00 0.00 3.68
2436 3863 1.271934 CACGGTTCATCCCATTTTGCA 59.728 47.619 0.00 0.00 0.00 4.08
2437 3864 1.967066 ACGGTTCATCCCATTTTGCAA 59.033 42.857 0.00 0.00 0.00 4.08
2438 3865 2.366916 ACGGTTCATCCCATTTTGCAAA 59.633 40.909 8.05 8.05 0.00 3.68
2439 3866 2.995258 CGGTTCATCCCATTTTGCAAAG 59.005 45.455 12.41 1.53 0.00 2.77
2440 3867 3.554752 CGGTTCATCCCATTTTGCAAAGT 60.555 43.478 12.41 6.68 0.00 2.66
2441 3868 4.388485 GGTTCATCCCATTTTGCAAAGTT 58.612 39.130 12.41 1.34 0.00 2.66
2442 3869 4.213906 GGTTCATCCCATTTTGCAAAGTTG 59.786 41.667 12.41 13.47 0.00 3.16
2456 3883 4.988708 CAAAGTTGCACTTGTTTTGTGT 57.011 36.364 0.00 0.00 38.66 3.72
2457 3884 4.700332 CAAAGTTGCACTTGTTTTGTGTG 58.300 39.130 0.00 0.00 38.66 3.82
2458 3885 3.658757 AGTTGCACTTGTTTTGTGTGT 57.341 38.095 0.00 0.00 37.70 3.72
2459 3886 3.316283 AGTTGCACTTGTTTTGTGTGTG 58.684 40.909 0.00 0.00 37.70 3.82
2460 3887 3.005261 AGTTGCACTTGTTTTGTGTGTGA 59.995 39.130 0.00 0.00 37.70 3.58
2461 3888 3.865011 TGCACTTGTTTTGTGTGTGAT 57.135 38.095 0.00 0.00 37.70 3.06
2462 3889 4.972514 TGCACTTGTTTTGTGTGTGATA 57.027 36.364 0.00 0.00 37.70 2.15
2463 3890 5.512753 TGCACTTGTTTTGTGTGTGATAT 57.487 34.783 0.00 0.00 37.70 1.63
2464 3891 5.280164 TGCACTTGTTTTGTGTGTGATATG 58.720 37.500 0.00 0.00 37.70 1.78
2465 3892 4.681025 GCACTTGTTTTGTGTGTGATATGG 59.319 41.667 0.00 0.00 37.70 2.74
2466 3893 5.221880 CACTTGTTTTGTGTGTGATATGGG 58.778 41.667 0.00 0.00 0.00 4.00
2467 3894 5.009510 CACTTGTTTTGTGTGTGATATGGGA 59.990 40.000 0.00 0.00 0.00 4.37
2468 3895 5.009610 ACTTGTTTTGTGTGTGATATGGGAC 59.990 40.000 0.00 0.00 0.00 4.46
2469 3896 3.823873 TGTTTTGTGTGTGATATGGGACC 59.176 43.478 0.00 0.00 0.00 4.46
2470 3897 3.797559 TTTGTGTGTGATATGGGACCA 57.202 42.857 0.00 0.00 0.00 4.02
2471 3898 3.797559 TTGTGTGTGATATGGGACCAA 57.202 42.857 0.00 0.00 0.00 3.67
2472 3899 3.066291 TGTGTGTGATATGGGACCAAC 57.934 47.619 0.00 0.00 0.00 3.77
2473 3900 2.290641 TGTGTGTGATATGGGACCAACC 60.291 50.000 0.00 0.00 38.08 3.77
2474 3901 1.988846 TGTGTGATATGGGACCAACCA 59.011 47.619 0.00 0.00 46.24 3.67
2481 3908 3.662290 TGGGACCAACCATGTTAGC 57.338 52.632 0.00 0.00 41.20 3.09
2482 3909 0.322098 TGGGACCAACCATGTTAGCG 60.322 55.000 0.00 0.00 41.20 4.26
2483 3910 0.035820 GGGACCAACCATGTTAGCGA 60.036 55.000 0.00 0.00 41.20 4.93
2484 3911 1.084289 GGACCAACCATGTTAGCGAC 58.916 55.000 0.00 0.00 38.79 5.19
2485 3912 1.084289 GACCAACCATGTTAGCGACC 58.916 55.000 0.00 0.00 0.00 4.79
2486 3913 0.322187 ACCAACCATGTTAGCGACCC 60.322 55.000 0.00 0.00 0.00 4.46
2487 3914 0.035439 CCAACCATGTTAGCGACCCT 60.035 55.000 0.00 0.00 0.00 4.34
2488 3915 1.086696 CAACCATGTTAGCGACCCTG 58.913 55.000 0.00 0.00 0.00 4.45
2489 3916 0.981183 AACCATGTTAGCGACCCTGA 59.019 50.000 0.00 0.00 0.00 3.86
2490 3917 0.249398 ACCATGTTAGCGACCCTGAC 59.751 55.000 0.00 0.00 0.00 3.51
2491 3918 0.806102 CCATGTTAGCGACCCTGACG 60.806 60.000 0.00 0.00 33.01 4.35
2492 3919 0.806102 CATGTTAGCGACCCTGACGG 60.806 60.000 0.00 0.00 33.01 4.79
2516 3943 4.451150 CCCGCGAGCCAGCAAGTA 62.451 66.667 8.23 0.00 36.85 2.24
2517 3944 2.434185 CCGCGAGCCAGCAAGTAA 60.434 61.111 8.23 0.00 36.85 2.24
2518 3945 2.740714 CCGCGAGCCAGCAAGTAAC 61.741 63.158 8.23 0.00 36.85 2.50
2519 3946 2.778679 GCGAGCCAGCAAGTAACG 59.221 61.111 0.00 0.00 37.05 3.18
2520 3947 2.778679 CGAGCCAGCAAGTAACGC 59.221 61.111 0.00 0.00 0.00 4.84
2521 3948 2.740714 CGAGCCAGCAAGTAACGCC 61.741 63.158 0.00 0.00 0.00 5.68
2522 3949 1.671054 GAGCCAGCAAGTAACGCCA 60.671 57.895 0.00 0.00 0.00 5.69
2523 3950 1.639298 GAGCCAGCAAGTAACGCCAG 61.639 60.000 0.00 0.00 0.00 4.85
2524 3951 2.690778 GCCAGCAAGTAACGCCAGG 61.691 63.158 0.00 0.00 0.00 4.45
2525 3952 1.003839 CCAGCAAGTAACGCCAGGA 60.004 57.895 0.00 0.00 0.00 3.86
2526 3953 0.605319 CCAGCAAGTAACGCCAGGAA 60.605 55.000 0.00 0.00 0.00 3.36
2527 3954 0.798776 CAGCAAGTAACGCCAGGAAG 59.201 55.000 0.00 0.00 0.00 3.46
2528 3955 0.685097 AGCAAGTAACGCCAGGAAGA 59.315 50.000 0.00 0.00 0.00 2.87
2529 3956 1.079503 GCAAGTAACGCCAGGAAGAG 58.920 55.000 0.00 0.00 0.00 2.85
2530 3957 1.726853 CAAGTAACGCCAGGAAGAGG 58.273 55.000 0.00 0.00 0.00 3.69
2553 3980 3.737172 CCCAACCGCGCCAAGAAG 61.737 66.667 0.00 0.00 0.00 2.85
2554 3981 4.404654 CCAACCGCGCCAAGAAGC 62.405 66.667 0.00 0.00 0.00 3.86
2555 3982 4.404654 CAACCGCGCCAAGAAGCC 62.405 66.667 0.00 0.00 0.00 4.35
2559 3986 4.404654 CGCGCCAAGAAGCCCAAC 62.405 66.667 0.00 0.00 0.00 3.77
2560 3987 4.056125 GCGCCAAGAAGCCCAACC 62.056 66.667 0.00 0.00 0.00 3.77
2561 3988 3.373565 CGCCAAGAAGCCCAACCC 61.374 66.667 0.00 0.00 0.00 4.11
2562 3989 2.203625 GCCAAGAAGCCCAACCCA 60.204 61.111 0.00 0.00 0.00 4.51
2563 3990 1.836604 GCCAAGAAGCCCAACCCAA 60.837 57.895 0.00 0.00 0.00 4.12
2564 3991 1.820010 GCCAAGAAGCCCAACCCAAG 61.820 60.000 0.00 0.00 0.00 3.61
2565 3992 1.187567 CCAAGAAGCCCAACCCAAGG 61.188 60.000 0.00 0.00 0.00 3.61
2566 3993 0.469892 CAAGAAGCCCAACCCAAGGT 60.470 55.000 0.00 0.00 37.65 3.50
2567 3994 1.154430 AAGAAGCCCAACCCAAGGTA 58.846 50.000 0.00 0.00 33.12 3.08
2568 3995 0.404426 AGAAGCCCAACCCAAGGTAC 59.596 55.000 0.00 0.00 33.12 3.34
2569 3996 0.111639 GAAGCCCAACCCAAGGTACA 59.888 55.000 0.00 0.00 33.12 2.90
2570 3997 0.178973 AAGCCCAACCCAAGGTACAC 60.179 55.000 0.00 0.00 33.12 2.90
2571 3998 1.969589 GCCCAACCCAAGGTACACG 60.970 63.158 0.00 0.00 33.12 4.49
2572 3999 1.302993 CCCAACCCAAGGTACACGG 60.303 63.158 0.00 0.00 33.12 4.94
2573 4000 1.302993 CCAACCCAAGGTACACGGG 60.303 63.158 11.00 11.00 46.16 5.28
2574 4001 1.969589 CAACCCAAGGTACACGGGC 60.970 63.158 12.20 0.00 44.81 6.13
2575 4002 3.200329 AACCCAAGGTACACGGGCC 62.200 63.158 12.20 0.00 44.81 5.80
2576 4003 4.419921 CCCAAGGTACACGGGCCC 62.420 72.222 13.57 13.57 35.29 5.80
2577 4004 3.642503 CCAAGGTACACGGGCCCA 61.643 66.667 24.92 0.00 0.00 5.36
2578 4005 2.046314 CAAGGTACACGGGCCCAG 60.046 66.667 24.92 16.68 0.00 4.45
2579 4006 2.203877 AAGGTACACGGGCCCAGA 60.204 61.111 24.92 0.00 0.00 3.86
2580 4007 1.844289 AAGGTACACGGGCCCAGAA 60.844 57.895 24.92 0.00 0.00 3.02
2581 4008 1.205460 AAGGTACACGGGCCCAGAAT 61.205 55.000 24.92 6.30 0.00 2.40
2582 4009 1.451387 GGTACACGGGCCCAGAATG 60.451 63.158 24.92 16.35 0.00 2.67
2705 4132 1.226575 CGACTTCCAGCGCGATACA 60.227 57.895 12.10 0.00 0.00 2.29
2954 4381 1.442017 GTGTTGTTCAATCGGCCGC 60.442 57.895 23.51 5.62 0.00 6.53
3061 4488 3.564053 TTCACGTCCAAAACCCTAGTT 57.436 42.857 0.00 0.00 38.03 2.24
3127 4554 3.441712 AACCTGGCTGCACCTTGCT 62.442 57.895 0.50 0.00 45.31 3.91
3216 4643 5.079397 ACGAGACGAAAAACTTTCATGTC 57.921 39.130 0.00 0.94 0.00 3.06
3310 4738 2.279517 CCTCGCGCTACCCATCAC 60.280 66.667 5.56 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 148 1.571955 GATGGGGTTGCCATTTCCTT 58.428 50.000 0.00 0.00 0.00 3.36
219 1301 1.139734 CATCGGAGTGTCACCTCGG 59.860 63.158 13.32 8.77 34.19 4.63
257 1339 0.896940 ACCGGTGGAGTCGTACACAT 60.897 55.000 6.12 0.00 39.31 3.21
342 1424 1.764723 TCCTCTCATCGGCAACATCAT 59.235 47.619 0.00 0.00 0.00 2.45
378 1460 8.797438 TGCATGGTTTAATAGTTTACATCACAA 58.203 29.630 0.00 0.00 0.00 3.33
406 1488 8.592105 AACAAACTACCAAATGACAATCATTG 57.408 30.769 4.86 0.00 45.57 2.82
580 1662 7.892778 TTGACACTTTTAAGGGTTGAAAAAC 57.107 32.000 0.00 0.00 44.15 2.43
646 1728 5.530243 AGGAGCATTACTAGTAGAACCCTT 58.470 41.667 3.59 0.00 0.00 3.95
656 1738 3.752665 TCGGGACTAGGAGCATTACTAG 58.247 50.000 0.00 0.00 41.83 2.57
657 1739 3.870538 TCGGGACTAGGAGCATTACTA 57.129 47.619 0.00 0.00 0.00 1.82
658 1740 2.750141 TCGGGACTAGGAGCATTACT 57.250 50.000 0.00 0.00 0.00 2.24
659 1741 3.574826 AGAATCGGGACTAGGAGCATTAC 59.425 47.826 0.00 0.00 0.00 1.89
660 1742 3.574396 CAGAATCGGGACTAGGAGCATTA 59.426 47.826 0.00 0.00 0.00 1.90
661 1743 2.366916 CAGAATCGGGACTAGGAGCATT 59.633 50.000 0.00 0.00 0.00 3.56
662 1744 1.967066 CAGAATCGGGACTAGGAGCAT 59.033 52.381 0.00 0.00 0.00 3.79
663 1745 1.342076 ACAGAATCGGGACTAGGAGCA 60.342 52.381 0.00 0.00 0.00 4.26
664 1746 1.404843 ACAGAATCGGGACTAGGAGC 58.595 55.000 0.00 0.00 0.00 4.70
665 1747 3.816523 GTCTACAGAATCGGGACTAGGAG 59.183 52.174 0.00 0.00 0.00 3.69
666 1748 3.743584 CGTCTACAGAATCGGGACTAGGA 60.744 52.174 0.00 0.00 0.00 2.94
667 1749 2.548904 CGTCTACAGAATCGGGACTAGG 59.451 54.545 0.00 0.00 0.00 3.02
668 1750 2.031857 GCGTCTACAGAATCGGGACTAG 60.032 54.545 0.00 0.00 0.00 2.57
815 1897 3.648009 GTGATCGATCTGATGGGAGAAC 58.352 50.000 25.02 8.04 37.47 3.01
967 2093 8.436778 TGGAGTGTGGCATTGTTTATATACTAT 58.563 33.333 0.00 0.00 0.00 2.12
1023 2181 1.212751 GTTCGCAGGGGATGTTTGC 59.787 57.895 0.00 0.00 34.58 3.68
1708 3094 1.373497 CGAGCTCCTGCGTGAAGTT 60.373 57.895 8.47 0.00 45.42 2.66
1968 3375 1.153549 GTAGCACAGCTCGAAGGGG 60.154 63.158 0.00 0.00 40.44 4.79
2265 3678 1.526575 AATTGAAGTGGCCGCACTGG 61.527 55.000 20.59 0.00 42.50 4.00
2294 3707 1.626825 AGCAAAAGGCCTAGTAACCGA 59.373 47.619 5.16 0.00 46.50 4.69
2298 3714 1.834188 GGCAGCAAAAGGCCTAGTAA 58.166 50.000 5.16 0.00 46.74 2.24
2337 3753 6.071840 AGCACTTTAGTTCAGTAGAGGTACAG 60.072 42.308 0.00 0.00 0.00 2.74
2338 3754 5.773680 AGCACTTTAGTTCAGTAGAGGTACA 59.226 40.000 0.00 0.00 0.00 2.90
2339 3755 6.270156 AGCACTTTAGTTCAGTAGAGGTAC 57.730 41.667 0.00 0.00 0.00 3.34
2375 3802 1.541147 CCGCCATGATCAACAACAGTT 59.459 47.619 0.00 0.00 0.00 3.16
2377 3804 1.167851 ACCGCCATGATCAACAACAG 58.832 50.000 0.00 0.00 0.00 3.16
2404 3831 3.095102 TGAACCGTGACGACAAATGTA 57.905 42.857 6.54 0.00 0.00 2.29
2405 3832 1.942677 TGAACCGTGACGACAAATGT 58.057 45.000 6.54 0.00 0.00 2.71
2412 3839 0.611200 AATGGGATGAACCGTGACGA 59.389 50.000 6.54 0.00 40.11 4.20
2413 3840 1.448985 AAATGGGATGAACCGTGACG 58.551 50.000 0.00 0.00 40.11 4.35
2414 3841 2.671070 GCAAAATGGGATGAACCGTGAC 60.671 50.000 0.00 0.00 40.11 3.67
2415 3842 1.543802 GCAAAATGGGATGAACCGTGA 59.456 47.619 0.00 0.00 40.11 4.35
2416 3843 1.271934 TGCAAAATGGGATGAACCGTG 59.728 47.619 0.00 0.00 40.11 4.94
2417 3844 1.626686 TGCAAAATGGGATGAACCGT 58.373 45.000 0.00 0.00 40.11 4.83
2418 3845 2.739885 TTGCAAAATGGGATGAACCG 57.260 45.000 0.00 0.00 40.11 4.44
2419 3846 4.006780 ACTTTGCAAAATGGGATGAACC 57.993 40.909 13.84 0.00 38.08 3.62
2420 3847 5.347012 CAACTTTGCAAAATGGGATGAAC 57.653 39.130 13.84 0.00 0.00 3.18
2439 3866 3.312828 TCACACACAAAACAAGTGCAAC 58.687 40.909 0.00 0.00 40.59 4.17
2440 3867 3.650070 TCACACACAAAACAAGTGCAA 57.350 38.095 0.00 0.00 40.59 4.08
2441 3868 3.865011 ATCACACACAAAACAAGTGCA 57.135 38.095 0.00 0.00 40.59 4.57
2442 3869 4.681025 CCATATCACACACAAAACAAGTGC 59.319 41.667 0.00 0.00 40.59 4.40
2443 3870 5.009510 TCCCATATCACACACAAAACAAGTG 59.990 40.000 0.00 0.00 42.56 3.16
2444 3871 5.009610 GTCCCATATCACACACAAAACAAGT 59.990 40.000 0.00 0.00 0.00 3.16
2445 3872 5.460646 GTCCCATATCACACACAAAACAAG 58.539 41.667 0.00 0.00 0.00 3.16
2446 3873 4.279671 GGTCCCATATCACACACAAAACAA 59.720 41.667 0.00 0.00 0.00 2.83
2447 3874 3.823873 GGTCCCATATCACACACAAAACA 59.176 43.478 0.00 0.00 0.00 2.83
2448 3875 3.823873 TGGTCCCATATCACACACAAAAC 59.176 43.478 0.00 0.00 0.00 2.43
2449 3876 4.105754 TGGTCCCATATCACACACAAAA 57.894 40.909 0.00 0.00 0.00 2.44
2450 3877 3.797559 TGGTCCCATATCACACACAAA 57.202 42.857 0.00 0.00 0.00 2.83
2451 3878 3.417101 GTTGGTCCCATATCACACACAA 58.583 45.455 0.00 0.00 0.00 3.33
2452 3879 2.290641 GGTTGGTCCCATATCACACACA 60.291 50.000 0.00 0.00 0.00 3.72
2453 3880 2.290641 TGGTTGGTCCCATATCACACAC 60.291 50.000 0.00 0.00 34.77 3.82
2454 3881 1.988846 TGGTTGGTCCCATATCACACA 59.011 47.619 0.00 0.00 34.77 3.72
2455 3882 2.799126 TGGTTGGTCCCATATCACAC 57.201 50.000 0.00 0.00 34.77 3.82
2456 3883 2.580322 ACATGGTTGGTCCCATATCACA 59.420 45.455 0.00 0.00 43.46 3.58
2457 3884 3.297134 ACATGGTTGGTCCCATATCAC 57.703 47.619 0.00 0.00 43.46 3.06
2458 3885 4.688597 GCTAACATGGTTGGTCCCATATCA 60.689 45.833 0.00 0.00 43.46 2.15
2459 3886 3.821033 GCTAACATGGTTGGTCCCATATC 59.179 47.826 0.00 0.00 43.46 1.63
2460 3887 3.747388 CGCTAACATGGTTGGTCCCATAT 60.747 47.826 0.00 0.00 43.46 1.78
2461 3888 2.420827 CGCTAACATGGTTGGTCCCATA 60.421 50.000 0.00 0.00 43.46 2.74
2462 3889 1.681780 CGCTAACATGGTTGGTCCCAT 60.682 52.381 0.00 0.00 46.28 4.00
2463 3890 0.322098 CGCTAACATGGTTGGTCCCA 60.322 55.000 0.00 0.00 39.27 4.37
2464 3891 0.035820 TCGCTAACATGGTTGGTCCC 60.036 55.000 0.00 0.00 34.77 4.46
2465 3892 1.084289 GTCGCTAACATGGTTGGTCC 58.916 55.000 0.00 0.00 0.00 4.46
2466 3893 1.084289 GGTCGCTAACATGGTTGGTC 58.916 55.000 0.00 0.00 0.00 4.02
2467 3894 0.322187 GGGTCGCTAACATGGTTGGT 60.322 55.000 0.00 0.00 0.00 3.67
2468 3895 0.035439 AGGGTCGCTAACATGGTTGG 60.035 55.000 0.00 0.00 0.00 3.77
2469 3896 1.086696 CAGGGTCGCTAACATGGTTG 58.913 55.000 0.00 0.00 0.00 3.77
2470 3897 0.981183 TCAGGGTCGCTAACATGGTT 59.019 50.000 0.00 0.00 0.00 3.67
2471 3898 0.249398 GTCAGGGTCGCTAACATGGT 59.751 55.000 0.00 0.00 0.00 3.55
2472 3899 0.806102 CGTCAGGGTCGCTAACATGG 60.806 60.000 0.00 0.00 0.00 3.66
2473 3900 0.806102 CCGTCAGGGTCGCTAACATG 60.806 60.000 0.00 0.00 0.00 3.21
2474 3901 1.515954 CCGTCAGGGTCGCTAACAT 59.484 57.895 0.00 0.00 0.00 2.71
2475 3902 2.967397 CCGTCAGGGTCGCTAACA 59.033 61.111 0.00 0.00 0.00 2.41
2499 3926 3.950794 TTACTTGCTGGCTCGCGGG 62.951 63.158 6.13 2.60 0.00 6.13
2500 3927 2.434185 TTACTTGCTGGCTCGCGG 60.434 61.111 6.13 0.00 0.00 6.46
2501 3928 2.778679 GTTACTTGCTGGCTCGCG 59.221 61.111 0.00 0.00 0.00 5.87
2502 3929 2.778679 CGTTACTTGCTGGCTCGC 59.221 61.111 0.00 0.00 0.00 5.03
2503 3930 2.740714 GGCGTTACTTGCTGGCTCG 61.741 63.158 0.00 0.00 0.00 5.03
2504 3931 1.639298 CTGGCGTTACTTGCTGGCTC 61.639 60.000 0.00 0.00 0.00 4.70
2505 3932 1.672356 CTGGCGTTACTTGCTGGCT 60.672 57.895 0.00 0.00 0.00 4.75
2506 3933 2.690778 CCTGGCGTTACTTGCTGGC 61.691 63.158 0.00 0.00 0.00 4.85
2507 3934 0.605319 TTCCTGGCGTTACTTGCTGG 60.605 55.000 0.00 0.00 0.00 4.85
2508 3935 0.798776 CTTCCTGGCGTTACTTGCTG 59.201 55.000 0.00 0.00 0.00 4.41
2509 3936 0.685097 TCTTCCTGGCGTTACTTGCT 59.315 50.000 0.00 0.00 0.00 3.91
2510 3937 1.079503 CTCTTCCTGGCGTTACTTGC 58.920 55.000 0.00 0.00 0.00 4.01
2511 3938 1.726853 CCTCTTCCTGGCGTTACTTG 58.273 55.000 0.00 0.00 0.00 3.16
2512 3939 0.036294 GCCTCTTCCTGGCGTTACTT 60.036 55.000 0.00 0.00 41.03 2.24
2513 3940 1.597461 GCCTCTTCCTGGCGTTACT 59.403 57.895 0.00 0.00 41.03 2.24
2514 3941 4.203618 GCCTCTTCCTGGCGTTAC 57.796 61.111 0.00 0.00 41.03 2.50
2536 3963 3.737172 CTTCTTGGCGCGGTTGGG 61.737 66.667 8.83 0.00 0.00 4.12
2537 3964 4.404654 GCTTCTTGGCGCGGTTGG 62.405 66.667 8.83 0.00 0.00 3.77
2538 3965 4.404654 GGCTTCTTGGCGCGGTTG 62.405 66.667 8.83 0.00 0.00 3.77
2542 3969 4.404654 GTTGGGCTTCTTGGCGCG 62.405 66.667 0.00 0.00 46.08 6.86
2543 3970 4.056125 GGTTGGGCTTCTTGGCGC 62.056 66.667 0.00 0.00 43.92 6.53
2544 3971 3.373565 GGGTTGGGCTTCTTGGCG 61.374 66.667 0.00 0.00 42.84 5.69
2545 3972 1.820010 CTTGGGTTGGGCTTCTTGGC 61.820 60.000 0.00 0.00 40.96 4.52
2546 3973 1.187567 CCTTGGGTTGGGCTTCTTGG 61.188 60.000 0.00 0.00 0.00 3.61
2547 3974 0.469892 ACCTTGGGTTGGGCTTCTTG 60.470 55.000 0.00 0.00 27.29 3.02
2548 3975 1.154430 TACCTTGGGTTGGGCTTCTT 58.846 50.000 0.00 0.00 37.09 2.52
2549 3976 0.404426 GTACCTTGGGTTGGGCTTCT 59.596 55.000 0.00 0.00 37.09 2.85
2550 3977 0.111639 TGTACCTTGGGTTGGGCTTC 59.888 55.000 0.00 0.00 37.09 3.86
2551 3978 0.178973 GTGTACCTTGGGTTGGGCTT 60.179 55.000 0.00 0.00 37.09 4.35
2552 3979 1.458927 GTGTACCTTGGGTTGGGCT 59.541 57.895 0.00 0.00 37.09 5.19
2553 3980 1.969589 CGTGTACCTTGGGTTGGGC 60.970 63.158 0.00 0.00 37.09 5.36
2554 3981 1.302993 CCGTGTACCTTGGGTTGGG 60.303 63.158 0.00 0.00 37.09 4.12
2555 3982 1.302993 CCCGTGTACCTTGGGTTGG 60.303 63.158 6.10 0.00 38.18 3.77
2556 3983 1.969589 GCCCGTGTACCTTGGGTTG 60.970 63.158 13.79 0.00 45.19 3.77
2557 3984 2.433004 GCCCGTGTACCTTGGGTT 59.567 61.111 13.79 0.00 45.19 4.11
2558 3985 3.643554 GGCCCGTGTACCTTGGGT 61.644 66.667 13.79 0.00 45.19 4.51
2559 3986 4.419921 GGGCCCGTGTACCTTGGG 62.420 72.222 5.69 9.27 46.22 4.12
2560 3987 3.622060 CTGGGCCCGTGTACCTTGG 62.622 68.421 19.37 0.00 0.00 3.61
2561 3988 2.046314 CTGGGCCCGTGTACCTTG 60.046 66.667 19.37 0.00 0.00 3.61
2562 3989 1.205460 ATTCTGGGCCCGTGTACCTT 61.205 55.000 19.37 0.00 0.00 3.50
2563 3990 1.615424 ATTCTGGGCCCGTGTACCT 60.615 57.895 19.37 0.00 0.00 3.08
2564 3991 1.451387 CATTCTGGGCCCGTGTACC 60.451 63.158 19.37 0.00 0.00 3.34
2565 3992 1.451387 CCATTCTGGGCCCGTGTAC 60.451 63.158 19.37 0.00 32.67 2.90
2566 3993 2.994699 CCATTCTGGGCCCGTGTA 59.005 61.111 19.37 6.85 32.67 2.90
2586 4013 3.289834 AACAGCTGCTTGGCGGTG 61.290 61.111 15.27 6.22 40.18 4.94
2587 4014 3.289834 CAACAGCTGCTTGGCGGT 61.290 61.111 15.27 0.00 41.89 5.68
2588 4015 2.979676 TCAACAGCTGCTTGGCGG 60.980 61.111 15.27 0.00 38.08 6.13
2589 4016 2.253452 GTCAACAGCTGCTTGGCG 59.747 61.111 15.27 0.00 37.29 5.69
2590 4017 2.253452 CGTCAACAGCTGCTTGGC 59.747 61.111 15.27 17.05 0.00 4.52
2591 4018 2.253452 GCGTCAACAGCTGCTTGG 59.747 61.111 15.27 7.17 0.00 3.61
2592 4019 3.337619 AGCGTCAACAGCTGCTTG 58.662 55.556 15.27 16.81 44.22 4.01
2598 4025 2.244651 ACGTTCCAGCGTCAACAGC 61.245 57.895 0.00 0.00 41.71 4.40
2599 4026 1.151777 ACACGTTCCAGCGTCAACAG 61.152 55.000 0.00 0.00 43.83 3.16
2705 4132 2.980233 GCCGGCTTGCTGTCTTGT 60.980 61.111 22.15 0.00 0.00 3.16
2731 4158 2.742403 CGTGTGGGGTTTCGGGTA 59.258 61.111 0.00 0.00 0.00 3.69
2954 4381 4.567747 GCCTCTTATATATGTTGGGGGTGG 60.568 50.000 0.00 0.00 0.00 4.61
3127 4554 3.500448 TTACTGCCTCAAACATGACCA 57.500 42.857 0.00 0.00 0.00 4.02
3216 4643 4.388773 TGACCTCTGATGAAAAATCGTTCG 59.611 41.667 0.00 0.00 0.00 3.95
3310 4738 2.747460 CCCACCAGACGCCATGTG 60.747 66.667 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.