Multiple sequence alignment - TraesCS3B01G444600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G444600 chr3B 100.000 3460 0 0 1 3460 684622008 684618549 0.000000e+00 6390.0
1 TraesCS3B01G444600 chr3B 86.701 1376 106 45 1149 2480 685066495 685067837 0.000000e+00 1456.0
2 TraesCS3B01G444600 chr3B 84.534 569 56 15 1932 2480 661757601 661758157 5.080000e-148 534.0
3 TraesCS3B01G444600 chr3B 83.585 463 44 11 2044 2480 661568420 661568876 4.160000e-109 405.0
4 TraesCS3B01G444600 chr3B 81.529 471 52 10 2037 2480 661570103 661570565 4.250000e-94 355.0
5 TraesCS3B01G444600 chr3B 91.736 242 19 1 1661 1902 661757376 661757616 5.530000e-88 335.0
6 TraesCS3B01G444600 chr3B 90.041 241 23 1 1662 1902 661785905 661786144 9.320000e-81 311.0
7 TraesCS3B01G444600 chr3D 87.919 1432 107 25 1153 2551 520280649 520282047 0.000000e+00 1626.0
8 TraesCS3B01G444600 chr3D 88.690 1344 109 23 1153 2463 519951239 519949906 0.000000e+00 1600.0
9 TraesCS3B01G444600 chr3D 90.140 1217 84 16 1151 2335 520245410 520246622 0.000000e+00 1550.0
10 TraesCS3B01G444600 chr3D 86.019 844 69 13 2476 3279 520246683 520247517 0.000000e+00 859.0
11 TraesCS3B01G444600 chr3D 83.969 892 78 28 1614 2480 500090704 500091555 0.000000e+00 795.0
12 TraesCS3B01G444600 chr3D 85.909 660 61 16 1844 2480 500019004 500019654 0.000000e+00 675.0
13 TraesCS3B01G444600 chr3D 83.333 450 39 12 2059 2480 500127898 500128339 1.950000e-102 383.0
14 TraesCS3B01G444600 chr3D 76.596 611 101 26 2882 3460 520282335 520282935 7.260000e-77 298.0
15 TraesCS3B01G444600 chr3D 84.076 157 17 6 2705 2857 519949708 519949556 1.000000e-30 145.0
16 TraesCS3B01G444600 chr3D 97.059 34 1 0 2840 2873 519949554 519949521 1.340000e-04 58.4
17 TraesCS3B01G444600 chr3A 89.782 1194 83 14 1188 2343 655668325 655669517 0.000000e+00 1493.0
18 TraesCS3B01G444600 chr3A 91.895 802 48 5 1559 2343 655786354 655787155 0.000000e+00 1105.0
19 TraesCS3B01G444600 chr3A 85.794 359 30 7 1151 1492 655785608 655785962 9.130000e-96 361.0
20 TraesCS3B01G444600 chr3A 90.000 150 15 0 171 320 131280344 131280195 9.800000e-46 195.0
21 TraesCS3B01G444600 chr3A 84.564 149 18 3 2702 2848 655669748 655669893 3.600000e-30 143.0
22 TraesCS3B01G444600 chr3A 81.152 191 14 12 2702 2873 655787381 655787568 2.170000e-27 134.0
23 TraesCS3B01G444600 chr3A 82.667 150 20 4 2702 2848 655670942 655671088 1.010000e-25 128.0
24 TraesCS3B01G444600 chr4D 87.013 539 45 10 1861 2375 499213755 499213218 4.980000e-163 584.0
25 TraesCS3B01G444600 chr4D 90.850 153 14 0 168 320 325765657 325765505 4.530000e-49 206.0
26 TraesCS3B01G444600 chr2D 92.208 154 12 0 167 320 598718528 598718681 5.810000e-53 219.0
27 TraesCS3B01G444600 chr2D 100.000 35 0 0 2838 2872 187039373 187039339 8.020000e-07 65.8
28 TraesCS3B01G444600 chr7B 90.385 156 14 1 164 319 330538845 330538691 1.630000e-48 204.0
29 TraesCS3B01G444600 chr7B 89.610 154 16 0 167 320 63863282 63863129 2.720000e-46 196.0
30 TraesCS3B01G444600 chr5D 90.667 150 14 0 171 320 481461951 481461802 2.110000e-47 200.0
31 TraesCS3B01G444600 chr5D 100.000 34 0 0 2837 2870 547831668 547831701 2.880000e-06 63.9
32 TraesCS3B01G444600 chr1D 89.809 157 14 2 164 320 169064507 169064661 2.110000e-47 200.0
33 TraesCS3B01G444600 chr4A 87.654 162 19 1 159 320 211797661 211797821 1.640000e-43 187.0
34 TraesCS3B01G444600 chr7D 86.585 164 22 0 157 320 620702565 620702728 7.630000e-42 182.0
35 TraesCS3B01G444600 chr1A 100.000 32 0 0 3118 3149 47612662 47612693 3.730000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G444600 chr3B 684618549 684622008 3459 True 6390.000000 6390 100.000000 1 3460 1 chr3B.!!$R1 3459
1 TraesCS3B01G444600 chr3B 685066495 685067837 1342 False 1456.000000 1456 86.701000 1149 2480 1 chr3B.!!$F2 1331
2 TraesCS3B01G444600 chr3B 661757376 661758157 781 False 434.500000 534 88.135000 1661 2480 2 chr3B.!!$F4 819
3 TraesCS3B01G444600 chr3B 661568420 661570565 2145 False 380.000000 405 82.557000 2037 2480 2 chr3B.!!$F3 443
4 TraesCS3B01G444600 chr3D 520245410 520247517 2107 False 1204.500000 1550 88.079500 1151 3279 2 chr3D.!!$F4 2128
5 TraesCS3B01G444600 chr3D 520280649 520282935 2286 False 962.000000 1626 82.257500 1153 3460 2 chr3D.!!$F5 2307
6 TraesCS3B01G444600 chr3D 500090704 500091555 851 False 795.000000 795 83.969000 1614 2480 1 chr3D.!!$F2 866
7 TraesCS3B01G444600 chr3D 500019004 500019654 650 False 675.000000 675 85.909000 1844 2480 1 chr3D.!!$F1 636
8 TraesCS3B01G444600 chr3D 519949521 519951239 1718 True 601.133333 1600 89.941667 1153 2873 3 chr3D.!!$R1 1720
9 TraesCS3B01G444600 chr3A 655668325 655671088 2763 False 588.000000 1493 85.671000 1188 2848 3 chr3A.!!$F1 1660
10 TraesCS3B01G444600 chr3A 655785608 655787568 1960 False 533.333333 1105 86.280333 1151 2873 3 chr3A.!!$F2 1722
11 TraesCS3B01G444600 chr4D 499213218 499213755 537 True 584.000000 584 87.013000 1861 2375 1 chr4D.!!$R2 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
400 401 0.172352 ATTTATGCACGTTTGGGCCG 59.828 50.0 0.00 0.00 0.00 6.13 F
1079 1080 0.040336 TTAAAAATGGCAACGCGCGA 60.040 45.0 39.36 14.91 43.84 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1415 1445 0.238289 ATGCGGTTGAACTTGAAGCG 59.762 50.0 8.03 8.03 44.9 4.68 R
2992 4706 0.107945 GATGTGGAGAGCGGCTTCTT 60.108 55.0 2.97 0.00 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.930634 GCTCTTTTTGTGAGGATGCTT 57.069 42.857 0.00 0.00 32.57 3.91
21 22 3.831112 GCTCTTTTTGTGAGGATGCTTC 58.169 45.455 0.00 0.00 32.57 3.86
22 23 3.254166 GCTCTTTTTGTGAGGATGCTTCA 59.746 43.478 1.64 0.00 32.57 3.02
23 24 4.082354 GCTCTTTTTGTGAGGATGCTTCAT 60.082 41.667 1.64 0.00 32.57 2.57
24 25 5.381174 TCTTTTTGTGAGGATGCTTCATG 57.619 39.130 1.64 0.00 0.00 3.07
25 26 5.072055 TCTTTTTGTGAGGATGCTTCATGA 58.928 37.500 1.64 0.00 0.00 3.07
27 28 5.571784 TTTTGTGAGGATGCTTCATGATC 57.428 39.130 0.00 0.00 0.00 2.92
28 29 4.498894 TTGTGAGGATGCTTCATGATCT 57.501 40.909 0.00 0.00 0.00 2.75
29 30 4.069300 TGTGAGGATGCTTCATGATCTC 57.931 45.455 0.00 0.00 0.00 2.75
30 31 3.710165 TGTGAGGATGCTTCATGATCTCT 59.290 43.478 0.00 0.00 0.00 3.10
31 32 4.163649 TGTGAGGATGCTTCATGATCTCTT 59.836 41.667 0.00 0.00 0.00 2.85
34 35 4.452825 AGGATGCTTCATGATCTCTTGTG 58.547 43.478 0.00 0.00 0.00 3.33
35 36 4.080469 AGGATGCTTCATGATCTCTTGTGT 60.080 41.667 0.00 0.00 0.00 3.72
36 37 4.639310 GGATGCTTCATGATCTCTTGTGTT 59.361 41.667 0.00 0.00 0.00 3.32
37 38 5.125097 GGATGCTTCATGATCTCTTGTGTTT 59.875 40.000 0.00 0.00 0.00 2.83
39 40 6.732531 TGCTTCATGATCTCTTGTGTTTAG 57.267 37.500 0.00 0.00 0.00 1.85
40 41 6.233434 TGCTTCATGATCTCTTGTGTTTAGT 58.767 36.000 0.00 0.00 0.00 2.24
41 42 6.369890 TGCTTCATGATCTCTTGTGTTTAGTC 59.630 38.462 0.00 0.00 0.00 2.59
42 43 6.369890 GCTTCATGATCTCTTGTGTTTAGTCA 59.630 38.462 0.00 0.00 0.00 3.41
43 44 7.095060 GCTTCATGATCTCTTGTGTTTAGTCAA 60.095 37.037 0.00 0.00 0.00 3.18
44 45 7.658179 TCATGATCTCTTGTGTTTAGTCAAC 57.342 36.000 0.00 0.00 35.71 3.18
45 46 7.445121 TCATGATCTCTTGTGTTTAGTCAACT 58.555 34.615 0.00 0.00 36.21 3.16
46 47 8.585018 TCATGATCTCTTGTGTTTAGTCAACTA 58.415 33.333 0.00 0.00 36.21 2.24
47 48 9.376075 CATGATCTCTTGTGTTTAGTCAACTAT 57.624 33.333 0.00 0.00 36.21 2.12
50 51 8.934507 ATCTCTTGTGTTTAGTCAACTATAGC 57.065 34.615 0.00 0.00 36.21 2.97
51 52 7.321153 TCTCTTGTGTTTAGTCAACTATAGCC 58.679 38.462 0.00 0.00 36.21 3.93
52 53 6.097356 TCTTGTGTTTAGTCAACTATAGCCG 58.903 40.000 0.00 0.00 36.21 5.52
53 54 4.178540 TGTGTTTAGTCAACTATAGCCGC 58.821 43.478 0.00 0.00 36.21 6.53
54 55 4.081862 TGTGTTTAGTCAACTATAGCCGCT 60.082 41.667 0.00 0.00 36.21 5.52
55 56 4.267928 GTGTTTAGTCAACTATAGCCGCTG 59.732 45.833 2.16 0.00 36.21 5.18
56 57 3.728076 TTAGTCAACTATAGCCGCTGG 57.272 47.619 2.16 0.00 0.00 4.85
57 58 1.486211 AGTCAACTATAGCCGCTGGT 58.514 50.000 2.16 0.00 0.00 4.00
58 59 2.662866 AGTCAACTATAGCCGCTGGTA 58.337 47.619 2.16 0.00 0.00 3.25
59 60 3.231818 AGTCAACTATAGCCGCTGGTAT 58.768 45.455 2.16 5.18 38.63 2.73
60 61 3.641906 AGTCAACTATAGCCGCTGGTATT 59.358 43.478 2.16 0.00 36.59 1.89
61 62 4.101119 AGTCAACTATAGCCGCTGGTATTT 59.899 41.667 2.16 0.00 36.59 1.40
62 63 4.448060 GTCAACTATAGCCGCTGGTATTTC 59.552 45.833 2.16 0.00 36.59 2.17
64 65 4.522722 ACTATAGCCGCTGGTATTTCTC 57.477 45.455 2.16 0.00 36.59 2.87
65 66 2.440539 ATAGCCGCTGGTATTTCTCG 57.559 50.000 2.16 0.00 31.17 4.04
66 67 1.108776 TAGCCGCTGGTATTTCTCGT 58.891 50.000 2.16 0.00 0.00 4.18
68 69 0.459585 GCCGCTGGTATTTCTCGTGA 60.460 55.000 0.00 0.00 0.00 4.35
69 70 1.560923 CCGCTGGTATTTCTCGTGAG 58.439 55.000 0.00 0.00 0.00 3.51
70 71 1.134367 CCGCTGGTATTTCTCGTGAGA 59.866 52.381 0.00 0.00 39.12 3.27
71 72 2.416836 CCGCTGGTATTTCTCGTGAGAA 60.417 50.000 8.19 8.19 44.94 2.87
72 73 3.448686 CGCTGGTATTTCTCGTGAGAAT 58.551 45.455 12.73 6.49 45.78 2.40
73 74 3.865745 CGCTGGTATTTCTCGTGAGAATT 59.134 43.478 12.73 11.60 45.78 2.17
74 75 4.330074 CGCTGGTATTTCTCGTGAGAATTT 59.670 41.667 12.73 6.91 45.78 1.82
76 77 6.035650 CGCTGGTATTTCTCGTGAGAATTTTA 59.964 38.462 12.73 0.00 45.78 1.52
78 79 7.064728 GCTGGTATTTCTCGTGAGAATTTTAGT 59.935 37.037 12.73 0.07 45.78 2.24
79 80 8.842358 TGGTATTTCTCGTGAGAATTTTAGTT 57.158 30.769 12.73 0.00 45.78 2.24
80 81 9.932207 TGGTATTTCTCGTGAGAATTTTAGTTA 57.068 29.630 12.73 0.00 45.78 2.24
85 86 8.897872 TTCTCGTGAGAATTTTAGTTACCTTT 57.102 30.769 8.19 0.00 42.06 3.11
86 87 8.530269 TCTCGTGAGAATTTTAGTTACCTTTC 57.470 34.615 0.00 0.00 41.32 2.62
87 88 8.365647 TCTCGTGAGAATTTTAGTTACCTTTCT 58.634 33.333 0.00 0.00 41.32 2.52
89 90 7.601508 TCGTGAGAATTTTAGTTACCTTTCTCC 59.398 37.037 7.73 0.64 38.72 3.71
90 91 7.603024 CGTGAGAATTTTAGTTACCTTTCTCCT 59.397 37.037 7.73 0.00 38.72 3.69
91 92 8.722394 GTGAGAATTTTAGTTACCTTTCTCCTG 58.278 37.037 7.73 0.00 38.72 3.86
92 93 7.883311 TGAGAATTTTAGTTACCTTTCTCCTGG 59.117 37.037 7.73 0.00 38.72 4.45
93 94 6.659668 AGAATTTTAGTTACCTTTCTCCTGGC 59.340 38.462 0.00 0.00 0.00 4.85
94 95 4.986054 TTTAGTTACCTTTCTCCTGGCA 57.014 40.909 0.00 0.00 0.00 4.92
95 96 4.553330 TTAGTTACCTTTCTCCTGGCAG 57.447 45.455 7.75 7.75 0.00 4.85
96 97 1.630878 AGTTACCTTTCTCCTGGCAGG 59.369 52.381 28.01 28.01 36.46 4.85
97 98 1.351350 GTTACCTTTCTCCTGGCAGGT 59.649 52.381 31.60 15.02 42.55 4.00
98 99 1.742308 TACCTTTCTCCTGGCAGGTT 58.258 50.000 31.60 11.61 40.32 3.50
100 101 0.401738 CCTTTCTCCTGGCAGGTTGA 59.598 55.000 31.60 25.84 36.53 3.18
102 103 2.586425 CTTTCTCCTGGCAGGTTGAAA 58.414 47.619 32.92 32.92 36.96 2.69
103 104 2.276732 TTCTCCTGGCAGGTTGAAAG 57.723 50.000 31.60 21.26 36.53 2.62
104 105 1.140312 TCTCCTGGCAGGTTGAAAGT 58.860 50.000 31.60 0.00 36.53 2.66
105 106 1.202806 TCTCCTGGCAGGTTGAAAGTG 60.203 52.381 31.60 13.04 36.53 3.16
106 107 0.178992 TCCTGGCAGGTTGAAAGTGG 60.179 55.000 31.60 4.50 36.53 4.00
107 108 1.181098 CCTGGCAGGTTGAAAGTGGG 61.181 60.000 25.74 0.00 0.00 4.61
108 109 0.468029 CTGGCAGGTTGAAAGTGGGT 60.468 55.000 6.61 0.00 0.00 4.51
109 110 0.467290 TGGCAGGTTGAAAGTGGGTC 60.467 55.000 0.00 0.00 0.00 4.46
110 111 1.515521 GGCAGGTTGAAAGTGGGTCG 61.516 60.000 0.00 0.00 0.00 4.79
111 112 1.515521 GCAGGTTGAAAGTGGGTCGG 61.516 60.000 0.00 0.00 0.00 4.79
112 113 0.889186 CAGGTTGAAAGTGGGTCGGG 60.889 60.000 0.00 0.00 0.00 5.14
113 114 2.265904 GGTTGAAAGTGGGTCGGGC 61.266 63.158 0.00 0.00 0.00 6.13
114 115 1.527380 GTTGAAAGTGGGTCGGGCA 60.527 57.895 0.00 0.00 0.00 5.36
115 116 0.893727 GTTGAAAGTGGGTCGGGCAT 60.894 55.000 0.00 0.00 0.00 4.40
117 118 2.676471 AAAGTGGGTCGGGCATGC 60.676 61.111 9.90 9.90 0.00 4.06
118 119 3.210012 AAAGTGGGTCGGGCATGCT 62.210 57.895 18.92 0.00 0.00 3.79
119 120 3.925630 AAGTGGGTCGGGCATGCTG 62.926 63.158 18.92 10.89 0.00 4.41
129 130 3.945434 GCATGCTGCCGATCACCG 61.945 66.667 11.37 0.00 37.42 4.94
130 131 2.512286 CATGCTGCCGATCACCGT 60.512 61.111 0.00 0.00 36.31 4.83
131 132 1.227234 CATGCTGCCGATCACCGTA 60.227 57.895 0.00 0.00 36.31 4.02
133 134 2.585247 GCTGCCGATCACCGTACC 60.585 66.667 0.00 0.00 36.31 3.34
134 135 3.077519 GCTGCCGATCACCGTACCT 62.078 63.158 0.00 0.00 36.31 3.08
137 138 3.077519 GCCGATCACCGTACCTGCT 62.078 63.158 0.00 0.00 36.31 4.24
138 139 1.226974 CCGATCACCGTACCTGCTG 60.227 63.158 0.00 0.00 36.31 4.41
139 140 1.878522 CGATCACCGTACCTGCTGC 60.879 63.158 0.00 0.00 0.00 5.25
140 141 1.218047 GATCACCGTACCTGCTGCA 59.782 57.895 0.88 0.88 0.00 4.41
142 143 1.826340 ATCACCGTACCTGCTGCACA 61.826 55.000 0.00 0.00 0.00 4.57
143 144 2.030562 ACCGTACCTGCTGCACAC 59.969 61.111 0.00 0.00 0.00 3.82
144 145 2.030412 CCGTACCTGCTGCACACA 59.970 61.111 0.00 0.00 0.00 3.72
145 146 1.596752 CCGTACCTGCTGCACACAA 60.597 57.895 0.00 0.00 0.00 3.33
146 147 1.569493 CGTACCTGCTGCACACAAC 59.431 57.895 0.00 0.00 0.00 3.32
147 148 1.841663 CGTACCTGCTGCACACAACC 61.842 60.000 0.00 0.00 0.00 3.77
148 149 1.228124 TACCTGCTGCACACAACCC 60.228 57.895 0.00 0.00 0.00 4.11
150 151 3.297620 CTGCTGCACACAACCCCC 61.298 66.667 0.00 0.00 0.00 5.40
172 173 8.079211 CCCCCTCGATTAATTGATTATCTCTA 57.921 38.462 5.84 0.00 0.00 2.43
173 174 7.982354 CCCCCTCGATTAATTGATTATCTCTAC 59.018 40.741 5.84 0.00 0.00 2.59
174 175 8.754080 CCCCTCGATTAATTGATTATCTCTACT 58.246 37.037 5.84 0.00 0.00 2.57
175 176 9.796120 CCCTCGATTAATTGATTATCTCTACTC 57.204 37.037 5.84 0.00 0.00 2.59
176 177 9.796120 CCTCGATTAATTGATTATCTCTACTCC 57.204 37.037 5.84 0.00 0.00 3.85
191 192 7.440505 TCTCTACTCCTATAAGTGACTCAGT 57.559 40.000 0.00 0.00 0.00 3.41
192 193 7.863722 TCTCTACTCCTATAAGTGACTCAGTT 58.136 38.462 4.52 4.52 0.00 3.16
193 194 7.771361 TCTCTACTCCTATAAGTGACTCAGTTG 59.229 40.741 9.10 0.00 0.00 3.16
195 196 5.334421 ACTCCTATAAGTGACTCAGTTGGT 58.666 41.667 9.10 1.62 0.00 3.67
196 197 5.186021 ACTCCTATAAGTGACTCAGTTGGTG 59.814 44.000 9.10 5.90 0.00 4.17
198 199 5.958380 TCCTATAAGTGACTCAGTTGGTGAT 59.042 40.000 9.10 0.00 33.51 3.06
199 200 6.045318 CCTATAAGTGACTCAGTTGGTGATG 58.955 44.000 9.10 0.00 33.51 3.07
200 201 5.745312 ATAAGTGACTCAGTTGGTGATGA 57.255 39.130 9.10 0.00 33.51 2.92
204 205 2.639347 TGACTCAGTTGGTGATGATGGT 59.361 45.455 0.00 0.00 33.51 3.55
206 207 2.373169 ACTCAGTTGGTGATGATGGTGT 59.627 45.455 0.00 0.00 33.51 4.16
208 209 2.106338 TCAGTTGGTGATGATGGTGTGT 59.894 45.455 0.00 0.00 0.00 3.72
209 210 2.485426 CAGTTGGTGATGATGGTGTGTC 59.515 50.000 0.00 0.00 0.00 3.67
211 212 3.582647 AGTTGGTGATGATGGTGTGTCTA 59.417 43.478 0.00 0.00 0.00 2.59
212 213 4.225942 AGTTGGTGATGATGGTGTGTCTAT 59.774 41.667 0.00 0.00 0.00 1.98
213 214 4.406648 TGGTGATGATGGTGTGTCTATC 57.593 45.455 0.00 0.00 35.10 2.08
218 219 3.733443 TGATGGTGTGTCTATCATCCG 57.267 47.619 0.00 0.00 38.73 4.18
220 221 3.450817 TGATGGTGTGTCTATCATCCGTT 59.549 43.478 0.00 0.00 38.73 4.44
221 222 4.647399 TGATGGTGTGTCTATCATCCGTTA 59.353 41.667 0.00 0.00 38.73 3.18
224 225 5.984725 TGGTGTGTCTATCATCCGTTATTT 58.015 37.500 0.00 0.00 0.00 1.40
225 226 6.046593 TGGTGTGTCTATCATCCGTTATTTC 58.953 40.000 0.00 0.00 0.00 2.17
226 227 6.127168 TGGTGTGTCTATCATCCGTTATTTCT 60.127 38.462 0.00 0.00 0.00 2.52
228 229 6.978659 GTGTGTCTATCATCCGTTATTTCTGA 59.021 38.462 0.00 0.00 0.00 3.27
229 230 7.653713 GTGTGTCTATCATCCGTTATTTCTGAT 59.346 37.037 0.00 0.00 0.00 2.90
231 232 7.867909 GTGTCTATCATCCGTTATTTCTGATCA 59.132 37.037 0.00 0.00 0.00 2.92
232 233 8.588472 TGTCTATCATCCGTTATTTCTGATCAT 58.412 33.333 0.00 0.00 0.00 2.45
233 234 9.429359 GTCTATCATCCGTTATTTCTGATCATT 57.571 33.333 0.00 0.00 0.00 2.57
253 254 2.225068 AGATCCGCATCTAACAACCG 57.775 50.000 0.00 0.00 37.63 4.44
270 271 2.388232 CGCGAGGTAAGTTGTGGCC 61.388 63.158 0.00 0.00 0.00 5.36
271 272 1.003718 GCGAGGTAAGTTGTGGCCT 60.004 57.895 3.32 0.00 0.00 5.19
272 273 0.605589 GCGAGGTAAGTTGTGGCCTT 60.606 55.000 3.32 0.00 0.00 4.35
273 274 1.892209 CGAGGTAAGTTGTGGCCTTT 58.108 50.000 3.32 0.00 0.00 3.11
274 275 2.227194 CGAGGTAAGTTGTGGCCTTTT 58.773 47.619 3.32 0.00 0.00 2.27
275 276 2.621526 CGAGGTAAGTTGTGGCCTTTTT 59.378 45.455 3.32 0.00 0.00 1.94
277 278 2.102420 AGGTAAGTTGTGGCCTTTTTGC 59.898 45.455 3.32 0.00 0.00 3.68
278 279 2.159028 GGTAAGTTGTGGCCTTTTTGCA 60.159 45.455 3.32 0.00 0.00 4.08
279 280 2.777832 AAGTTGTGGCCTTTTTGCAA 57.222 40.000 3.32 0.00 0.00 4.08
280 281 2.022764 AGTTGTGGCCTTTTTGCAAC 57.977 45.000 3.32 9.61 39.52 4.17
283 284 2.706339 TGTGGCCTTTTTGCAACAAT 57.294 40.000 3.32 0.00 42.12 2.71
284 285 3.827008 TGTGGCCTTTTTGCAACAATA 57.173 38.095 3.32 0.00 42.12 1.90
285 286 4.142609 TGTGGCCTTTTTGCAACAATAA 57.857 36.364 3.32 0.00 42.12 1.40
286 287 3.873952 TGTGGCCTTTTTGCAACAATAAC 59.126 39.130 3.32 0.00 42.12 1.89
287 288 3.249799 GTGGCCTTTTTGCAACAATAACC 59.750 43.478 3.32 1.62 35.16 2.85
288 289 2.811431 GGCCTTTTTGCAACAATAACCC 59.189 45.455 0.00 0.00 0.00 4.11
289 290 2.478514 GCCTTTTTGCAACAATAACCCG 59.521 45.455 0.00 0.00 0.00 5.28
290 291 2.478514 CCTTTTTGCAACAATAACCCGC 59.521 45.455 0.00 0.00 0.00 6.13
291 292 3.389221 CTTTTTGCAACAATAACCCGCT 58.611 40.909 0.00 0.00 0.00 5.52
292 293 3.460857 TTTTGCAACAATAACCCGCTT 57.539 38.095 0.00 0.00 0.00 4.68
293 294 2.715737 TTGCAACAATAACCCGCTTC 57.284 45.000 0.00 0.00 0.00 3.86
294 295 1.904287 TGCAACAATAACCCGCTTCT 58.096 45.000 0.00 0.00 0.00 2.85
295 296 1.810151 TGCAACAATAACCCGCTTCTC 59.190 47.619 0.00 0.00 0.00 2.87
297 298 2.159517 GCAACAATAACCCGCTTCTCTG 60.160 50.000 0.00 0.00 0.00 3.35
298 299 1.739067 ACAATAACCCGCTTCTCTGC 58.261 50.000 0.00 0.00 0.00 4.26
299 300 1.279271 ACAATAACCCGCTTCTCTGCT 59.721 47.619 0.00 0.00 0.00 4.24
300 301 1.936547 CAATAACCCGCTTCTCTGCTC 59.063 52.381 0.00 0.00 0.00 4.26
301 302 0.466124 ATAACCCGCTTCTCTGCTCC 59.534 55.000 0.00 0.00 0.00 4.70
302 303 0.902984 TAACCCGCTTCTCTGCTCCA 60.903 55.000 0.00 0.00 0.00 3.86
303 304 1.768684 AACCCGCTTCTCTGCTCCAA 61.769 55.000 0.00 0.00 0.00 3.53
304 305 1.222936 CCCGCTTCTCTGCTCCAAT 59.777 57.895 0.00 0.00 0.00 3.16
305 306 0.393537 CCCGCTTCTCTGCTCCAATT 60.394 55.000 0.00 0.00 0.00 2.32
306 307 1.457346 CCGCTTCTCTGCTCCAATTT 58.543 50.000 0.00 0.00 0.00 1.82
307 308 1.131883 CCGCTTCTCTGCTCCAATTTG 59.868 52.381 0.00 0.00 0.00 2.32
309 310 1.542915 GCTTCTCTGCTCCAATTTGCA 59.457 47.619 0.00 0.00 37.63 4.08
316 317 1.888512 TGCTCCAATTTGCAGAGAACC 59.111 47.619 4.21 0.00 34.84 3.62
317 318 1.203287 GCTCCAATTTGCAGAGAACCC 59.797 52.381 4.21 0.00 0.00 4.11
319 320 1.428912 TCCAATTTGCAGAGAACCCCT 59.571 47.619 0.00 0.00 0.00 4.79
320 321 1.821136 CCAATTTGCAGAGAACCCCTC 59.179 52.381 0.00 0.00 42.28 4.30
322 323 1.376649 ATTTGCAGAGAACCCCTCCT 58.623 50.000 0.00 0.00 42.97 3.69
323 324 0.401738 TTTGCAGAGAACCCCTCCTG 59.598 55.000 0.00 0.00 42.97 3.86
324 325 2.129555 TTGCAGAGAACCCCTCCTGC 62.130 60.000 0.00 0.00 42.97 4.85
328 329 2.612115 AGAACCCCTCCTGCCTGG 60.612 66.667 0.00 0.00 37.10 4.45
329 330 3.732849 GAACCCCTCCTGCCTGGG 61.733 72.222 0.00 0.00 45.34 4.45
344 345 2.828549 GGGCGGCCCACACAATAG 60.829 66.667 32.90 0.00 44.65 1.73
345 346 2.828549 GGCGGCCCACACAATAGG 60.829 66.667 8.12 0.00 0.00 2.57
360 361 4.947921 AGGGACCTCCTATACGGC 57.052 61.111 0.00 0.00 45.98 5.68
361 362 0.407139 TAGGGACCTCCTATACGGCC 59.593 60.000 0.00 0.00 45.98 6.13
362 363 1.912264 GGGACCTCCTATACGGCCC 60.912 68.421 0.00 0.00 35.95 5.80
363 364 1.155624 GGACCTCCTATACGGCCCT 59.844 63.158 0.00 0.00 0.00 5.19
364 365 0.899253 GGACCTCCTATACGGCCCTC 60.899 65.000 0.00 0.00 0.00 4.30
367 368 1.536943 CCTCCTATACGGCCCTCTGC 61.537 65.000 0.00 0.00 40.16 4.26
368 369 1.867919 CTCCTATACGGCCCTCTGCG 61.868 65.000 0.00 0.00 42.61 5.18
369 370 2.201022 CCTATACGGCCCTCTGCGT 61.201 63.158 0.00 0.00 42.61 5.24
371 372 3.146726 TATACGGCCCTCTGCGTGC 62.147 63.158 0.00 0.00 42.61 5.34
376 377 4.074526 GCCCTCTGCGTGCTGAGA 62.075 66.667 24.73 6.09 42.28 3.27
377 378 2.183811 CCCTCTGCGTGCTGAGAG 59.816 66.667 24.73 14.28 42.28 3.20
378 379 2.346541 CCCTCTGCGTGCTGAGAGA 61.347 63.158 24.73 5.10 42.28 3.10
380 381 0.458197 CCTCTGCGTGCTGAGAGAAG 60.458 60.000 24.73 8.72 42.28 2.85
381 382 0.525311 CTCTGCGTGCTGAGAGAAGA 59.475 55.000 20.17 0.00 42.28 2.87
382 383 1.134753 CTCTGCGTGCTGAGAGAAGAT 59.865 52.381 20.17 0.00 42.28 2.40
385 386 3.193479 TCTGCGTGCTGAGAGAAGATTTA 59.807 43.478 0.00 0.00 0.00 1.40
387 388 3.867493 TGCGTGCTGAGAGAAGATTTATG 59.133 43.478 0.00 0.00 0.00 1.90
388 389 3.303001 GCGTGCTGAGAGAAGATTTATGC 60.303 47.826 0.00 0.00 0.00 3.14
389 390 3.867493 CGTGCTGAGAGAAGATTTATGCA 59.133 43.478 0.00 0.00 0.00 3.96
390 391 4.260132 CGTGCTGAGAGAAGATTTATGCAC 60.260 45.833 0.00 0.00 43.00 4.57
391 392 3.867493 TGCTGAGAGAAGATTTATGCACG 59.133 43.478 0.00 0.00 0.00 5.34
392 393 3.868077 GCTGAGAGAAGATTTATGCACGT 59.132 43.478 0.00 0.00 0.00 4.49
394 395 5.163814 GCTGAGAGAAGATTTATGCACGTTT 60.164 40.000 0.00 0.00 0.00 3.60
396 397 5.122239 TGAGAGAAGATTTATGCACGTTTGG 59.878 40.000 0.00 0.00 0.00 3.28
397 398 4.396166 AGAGAAGATTTATGCACGTTTGGG 59.604 41.667 0.00 0.00 0.00 4.12
398 399 2.939460 AGATTTATGCACGTTTGGGC 57.061 45.000 0.00 0.00 0.00 5.36
399 400 1.476488 AGATTTATGCACGTTTGGGCC 59.524 47.619 0.00 0.00 0.00 5.80
400 401 0.172352 ATTTATGCACGTTTGGGCCG 59.828 50.000 0.00 0.00 0.00 6.13
401 402 1.867919 TTTATGCACGTTTGGGCCGG 61.868 55.000 0.00 0.00 0.00 6.13
414 415 4.740431 GCCGGCCCATTTGTGTGC 62.740 66.667 18.11 0.00 0.00 4.57
415 416 4.418401 CCGGCCCATTTGTGTGCG 62.418 66.667 0.00 0.00 0.00 5.34
416 417 4.418401 CGGCCCATTTGTGTGCGG 62.418 66.667 0.00 0.00 0.00 5.69
417 418 4.740431 GGCCCATTTGTGTGCGGC 62.740 66.667 0.00 0.00 35.79 6.53
418 419 4.740431 GCCCATTTGTGTGCGGCC 62.740 66.667 0.00 0.00 32.58 6.13
420 421 2.259204 CCATTTGTGTGCGGCCTG 59.741 61.111 0.00 0.00 0.00 4.85
423 424 0.249405 CATTTGTGTGCGGCCTGTTT 60.249 50.000 0.00 0.00 0.00 2.83
425 426 0.247736 TTTGTGTGCGGCCTGTTTTT 59.752 45.000 0.00 0.00 0.00 1.94
477 478 6.705825 CGTTTCATTTTTCTTTCCTTTCCCAT 59.294 34.615 0.00 0.00 0.00 4.00
479 480 8.902806 GTTTCATTTTTCTTTCCTTTCCCATTT 58.097 29.630 0.00 0.00 0.00 2.32
480 481 9.473007 TTTCATTTTTCTTTCCTTTCCCATTTT 57.527 25.926 0.00 0.00 0.00 1.82
481 482 9.473007 TTCATTTTTCTTTCCTTTCCCATTTTT 57.527 25.926 0.00 0.00 0.00 1.94
483 484 8.685427 CATTTTTCTTTCCTTTCCCATTTTTGT 58.315 29.630 0.00 0.00 0.00 2.83
484 485 8.642935 TTTTTCTTTCCTTTCCCATTTTTGTT 57.357 26.923 0.00 0.00 0.00 2.83
487 488 8.642935 TTCTTTCCTTTCCCATTTTTGTTTTT 57.357 26.923 0.00 0.00 0.00 1.94
603 604 9.689976 TGTTTGTGAATTCCAAATATGTTAGTG 57.310 29.630 18.76 0.00 34.59 2.74
604 605 9.906660 GTTTGTGAATTCCAAATATGTTAGTGA 57.093 29.630 18.76 0.00 34.59 3.41
668 669 8.931385 TTTCAAGAAATTGAGAAAAGGTCAAG 57.069 30.769 0.00 0.00 37.35 3.02
670 671 8.469309 TCAAGAAATTGAGAAAAGGTCAAGAT 57.531 30.769 0.00 0.00 37.35 2.40
671 672 8.917088 TCAAGAAATTGAGAAAAGGTCAAGATT 58.083 29.630 0.00 0.00 37.35 2.40
675 676 9.533253 GAAATTGAGAAAAGGTCAAGATTTTGA 57.467 29.630 0.00 0.00 40.92 2.69
676 677 9.889128 AAATTGAGAAAAGGTCAAGATTTTGAA 57.111 25.926 0.00 0.00 44.49 2.69
677 678 9.889128 AATTGAGAAAAGGTCAAGATTTTGAAA 57.111 25.926 0.00 0.00 44.49 2.69
679 680 9.717942 TTGAGAAAAGGTCAAGATTTTGAAAAA 57.282 25.926 0.00 0.00 44.49 1.94
721 722 9.912634 AACTGTGAATGAAATTGAATAAATCGT 57.087 25.926 0.00 0.00 36.07 3.73
723 724 9.778993 CTGTGAATGAAATTGAATAAATCGTCT 57.221 29.630 0.00 0.00 36.07 4.18
724 725 9.558648 TGTGAATGAAATTGAATAAATCGTCTG 57.441 29.630 0.00 0.00 36.07 3.51
727 728 9.773328 GAATGAAATTGAATAAATCGTCTGTCA 57.227 29.630 0.00 0.00 36.07 3.58
780 781 8.795786 TGTCCTAAAAATTCAAAAGATGTTCG 57.204 30.769 0.00 0.00 0.00 3.95
781 782 8.410141 TGTCCTAAAAATTCAAAAGATGTTCGT 58.590 29.630 0.00 0.00 0.00 3.85
782 783 8.690840 GTCCTAAAAATTCAAAAGATGTTCGTG 58.309 33.333 0.00 0.00 0.00 4.35
783 784 8.625651 TCCTAAAAATTCAAAAGATGTTCGTGA 58.374 29.630 0.00 0.00 0.00 4.35
784 785 9.243637 CCTAAAAATTCAAAAGATGTTCGTGAA 57.756 29.630 4.71 4.71 33.08 3.18
790 791 9.743057 AATTCAAAAGATGTTCGTGAATTACAA 57.257 25.926 18.22 0.00 43.55 2.41
791 792 9.743057 ATTCAAAAGATGTTCGTGAATTACAAA 57.257 25.926 8.04 0.00 35.86 2.83
792 793 9.574458 TTCAAAAGATGTTCGTGAATTACAAAA 57.426 25.926 0.00 0.00 0.00 2.44
793 794 9.743057 TCAAAAGATGTTCGTGAATTACAAAAT 57.257 25.926 0.00 0.00 0.00 1.82
902 903 4.965200 AAAAATCCACCAATTTCCCGAA 57.035 36.364 0.00 0.00 0.00 4.30
903 904 4.965200 AAAATCCACCAATTTCCCGAAA 57.035 36.364 0.00 0.00 34.46 3.46
904 905 4.965200 AAATCCACCAATTTCCCGAAAA 57.035 36.364 0.00 0.00 33.56 2.29
905 906 5.497464 AAATCCACCAATTTCCCGAAAAT 57.503 34.783 0.00 0.00 39.30 1.82
906 907 3.951775 TCCACCAATTTCCCGAAAATG 57.048 42.857 0.00 0.00 37.64 2.32
907 908 3.235200 TCCACCAATTTCCCGAAAATGT 58.765 40.909 4.91 0.00 37.64 2.71
908 909 3.643792 TCCACCAATTTCCCGAAAATGTT 59.356 39.130 4.91 0.00 37.64 2.71
909 910 3.993736 CCACCAATTTCCCGAAAATGTTC 59.006 43.478 4.91 0.00 37.64 3.18
926 927 9.325150 GAAAATGTTCGTCGATTCTAAAAATGA 57.675 29.630 0.00 0.00 0.00 2.57
929 930 6.817396 TGTTCGTCGATTCTAAAAATGACTG 58.183 36.000 0.00 0.00 0.00 3.51
930 931 5.450376 TCGTCGATTCTAAAAATGACTGC 57.550 39.130 0.00 0.00 0.00 4.40
931 932 5.168569 TCGTCGATTCTAAAAATGACTGCT 58.831 37.500 0.00 0.00 0.00 4.24
932 933 5.062183 TCGTCGATTCTAAAAATGACTGCTG 59.938 40.000 0.00 0.00 0.00 4.41
934 935 6.237942 CGTCGATTCTAAAAATGACTGCTGAT 60.238 38.462 0.00 0.00 0.00 2.90
935 936 7.467623 GTCGATTCTAAAAATGACTGCTGATT 58.532 34.615 0.00 0.00 0.00 2.57
936 937 7.637907 GTCGATTCTAAAAATGACTGCTGATTC 59.362 37.037 0.00 0.00 0.00 2.52
939 940 9.630098 GATTCTAAAAATGACTGCTGATTCAAA 57.370 29.630 0.00 0.00 0.00 2.69
1035 1036 5.895636 ATGTTCATGACCTAAAAATCGCA 57.104 34.783 0.00 0.00 0.00 5.10
1036 1037 5.697473 TGTTCATGACCTAAAAATCGCAA 57.303 34.783 0.00 0.00 0.00 4.85
1037 1038 6.078202 TGTTCATGACCTAAAAATCGCAAA 57.922 33.333 0.00 0.00 0.00 3.68
1038 1039 6.507900 TGTTCATGACCTAAAAATCGCAAAA 58.492 32.000 0.00 0.00 0.00 2.44
1039 1040 7.151308 TGTTCATGACCTAAAAATCGCAAAAT 58.849 30.769 0.00 0.00 0.00 1.82
1040 1041 7.655328 TGTTCATGACCTAAAAATCGCAAAATT 59.345 29.630 0.00 0.00 0.00 1.82
1041 1042 7.579589 TCATGACCTAAAAATCGCAAAATTG 57.420 32.000 0.00 0.00 0.00 2.32
1043 1044 7.541783 TCATGACCTAAAAATCGCAAAATTGAG 59.458 33.333 0.00 0.00 0.00 3.02
1044 1045 6.744112 TGACCTAAAAATCGCAAAATTGAGT 58.256 32.000 0.00 0.00 0.00 3.41
1045 1046 7.877003 TGACCTAAAAATCGCAAAATTGAGTA 58.123 30.769 0.00 0.00 0.00 2.59
1048 1049 9.705290 ACCTAAAAATCGCAAAATTGAGTAAAT 57.295 25.926 0.00 0.00 0.00 1.40
1075 1076 5.012655 ACGAATTTTAAAAATGGCAACGC 57.987 34.783 4.44 0.00 42.51 4.84
1076 1077 4.071570 CGAATTTTAAAAATGGCAACGCG 58.928 39.130 3.53 3.53 42.51 6.01
1077 1078 2.932167 TTTTAAAAATGGCAACGCGC 57.068 40.000 5.73 0.00 42.51 6.86
1079 1080 0.040336 TTAAAAATGGCAACGCGCGA 60.040 45.000 39.36 14.91 43.84 5.87
1080 1081 0.169230 TAAAAATGGCAACGCGCGAT 59.831 45.000 39.36 24.65 43.84 4.58
1081 1082 1.070471 AAAAATGGCAACGCGCGATC 61.070 50.000 39.36 22.96 43.84 3.69
1082 1083 2.193865 AAAATGGCAACGCGCGATCA 62.194 50.000 39.36 25.94 43.84 2.92
1083 1084 2.849142 AAATGGCAACGCGCGATCAC 62.849 55.000 39.36 22.90 43.84 3.06
1086 1087 4.828341 GCAACGCGCGATCACGAC 62.828 66.667 39.36 14.05 42.66 4.34
1087 1088 4.191485 CAACGCGCGATCACGACC 62.191 66.667 39.36 0.00 42.66 4.79
1088 1089 4.415332 AACGCGCGATCACGACCT 62.415 61.111 39.36 7.53 42.66 3.85
1089 1090 4.831307 ACGCGCGATCACGACCTC 62.831 66.667 39.36 0.00 42.66 3.85
1096 1097 1.725557 CGATCACGACCTCCGGATGT 61.726 60.000 12.63 12.63 43.93 3.06
1097 1098 0.460311 GATCACGACCTCCGGATGTT 59.540 55.000 13.98 0.00 43.93 2.71
1098 1099 0.175760 ATCACGACCTCCGGATGTTG 59.824 55.000 21.78 21.78 43.93 3.33
1099 1100 1.447838 CACGACCTCCGGATGTTGG 60.448 63.158 25.54 17.10 43.93 3.77
1100 1101 2.511600 CGACCTCCGGATGTTGGC 60.512 66.667 17.12 3.54 33.91 4.52
1101 1102 2.990479 GACCTCCGGATGTTGGCT 59.010 61.111 13.98 0.00 0.00 4.75
1102 1103 1.299976 GACCTCCGGATGTTGGCTT 59.700 57.895 13.98 0.00 0.00 4.35
1103 1104 0.744771 GACCTCCGGATGTTGGCTTC 60.745 60.000 13.98 0.00 0.00 3.86
1104 1105 1.201429 ACCTCCGGATGTTGGCTTCT 61.201 55.000 3.57 0.00 0.00 2.85
1105 1106 0.830648 CCTCCGGATGTTGGCTTCTA 59.169 55.000 3.57 0.00 0.00 2.10
1107 1108 1.482593 CTCCGGATGTTGGCTTCTACT 59.517 52.381 3.57 0.00 0.00 2.57
1108 1109 1.480954 TCCGGATGTTGGCTTCTACTC 59.519 52.381 0.00 0.00 0.00 2.59
1109 1110 1.473434 CCGGATGTTGGCTTCTACTCC 60.473 57.143 0.00 0.00 0.00 3.85
1110 1111 1.473434 CGGATGTTGGCTTCTACTCCC 60.473 57.143 0.00 0.00 0.00 4.30
1112 1113 2.158885 GGATGTTGGCTTCTACTCCCTC 60.159 54.545 0.00 0.00 0.00 4.30
1113 1114 1.276622 TGTTGGCTTCTACTCCCTCC 58.723 55.000 0.00 0.00 0.00 4.30
1114 1115 0.175989 GTTGGCTTCTACTCCCTCCG 59.824 60.000 0.00 0.00 0.00 4.63
1115 1116 0.252103 TTGGCTTCTACTCCCTCCGT 60.252 55.000 0.00 0.00 0.00 4.69
1118 1119 0.100861 GCTTCTACTCCCTCCGTTCG 59.899 60.000 0.00 0.00 0.00 3.95
1120 1121 2.636830 CTTCTACTCCCTCCGTTCGTA 58.363 52.381 0.00 0.00 0.00 3.43
1121 1122 2.787473 TCTACTCCCTCCGTTCGTAA 57.213 50.000 0.00 0.00 0.00 3.18
1123 1124 3.012518 TCTACTCCCTCCGTTCGTAAAG 58.987 50.000 0.00 0.00 0.00 1.85
1124 1125 1.625511 ACTCCCTCCGTTCGTAAAGT 58.374 50.000 0.00 0.00 0.00 2.66
1125 1126 1.966354 ACTCCCTCCGTTCGTAAAGTT 59.034 47.619 0.00 0.00 0.00 2.66
1126 1127 2.029560 ACTCCCTCCGTTCGTAAAGTTC 60.030 50.000 0.00 0.00 0.00 3.01
1127 1128 1.068333 TCCCTCCGTTCGTAAAGTTCG 60.068 52.381 0.00 0.00 0.00 3.95
1129 1130 1.336240 CCTCCGTTCGTAAAGTTCGGT 60.336 52.381 0.00 0.00 41.58 4.69
1130 1131 1.981533 CTCCGTTCGTAAAGTTCGGTC 59.018 52.381 0.00 0.00 41.58 4.79
1131 1132 1.336440 TCCGTTCGTAAAGTTCGGTCA 59.664 47.619 0.00 0.00 41.58 4.02
1132 1133 2.030007 TCCGTTCGTAAAGTTCGGTCAT 60.030 45.455 0.00 0.00 41.58 3.06
1133 1134 2.343544 CCGTTCGTAAAGTTCGGTCATC 59.656 50.000 0.00 0.00 36.99 2.92
1134 1135 3.240069 CGTTCGTAAAGTTCGGTCATCT 58.760 45.455 0.00 0.00 0.00 2.90
1135 1136 4.406069 CGTTCGTAAAGTTCGGTCATCTA 58.594 43.478 0.00 0.00 0.00 1.98
1136 1137 5.032863 CGTTCGTAAAGTTCGGTCATCTAT 58.967 41.667 0.00 0.00 0.00 1.98
1137 1138 5.514204 CGTTCGTAAAGTTCGGTCATCTATT 59.486 40.000 0.00 0.00 0.00 1.73
1138 1139 6.034256 CGTTCGTAAAGTTCGGTCATCTATTT 59.966 38.462 0.00 0.00 0.00 1.40
1140 1141 7.285783 TCGTAAAGTTCGGTCATCTATTTTG 57.714 36.000 0.00 0.00 0.00 2.44
1141 1142 6.311935 TCGTAAAGTTCGGTCATCTATTTTGG 59.688 38.462 0.00 0.00 0.00 3.28
1142 1143 6.311935 CGTAAAGTTCGGTCATCTATTTTGGA 59.688 38.462 0.00 0.00 0.00 3.53
1143 1144 7.148540 CGTAAAGTTCGGTCATCTATTTTGGAA 60.149 37.037 0.00 0.00 0.00 3.53
1144 1145 6.496338 AAGTTCGGTCATCTATTTTGGAAC 57.504 37.500 0.00 0.00 34.33 3.62
1149 1150 4.572389 CGGTCATCTATTTTGGAACTGAGG 59.428 45.833 0.00 0.00 0.00 3.86
1164 1165 5.416326 GGAACTGAGGAGTATGAGCGTATAT 59.584 44.000 0.00 0.00 0.00 0.86
1165 1166 6.071840 GGAACTGAGGAGTATGAGCGTATATT 60.072 42.308 0.00 0.00 0.00 1.28
1170 1171 9.862371 CTGAGGAGTATGAGCGTATATTTATTT 57.138 33.333 0.00 0.00 0.00 1.40
1180 1181 7.225931 TGAGCGTATATTTATTTCACCTGAACC 59.774 37.037 0.00 0.00 33.13 3.62
1186 1190 2.770164 ATTTCACCTGAACCGAGGAG 57.230 50.000 0.00 0.00 36.51 3.69
1233 1237 0.109226 GTGTCCTAGTCCGACTGCAC 60.109 60.000 11.52 10.45 0.00 4.57
1248 1252 1.072965 CTGCACCTCCCTTTCTTGTCT 59.927 52.381 0.00 0.00 0.00 3.41
1283 1287 4.263374 GGCACCCTCCTTTTATATACTCCC 60.263 50.000 0.00 0.00 0.00 4.30
1426 1456 4.445545 CCGCCGCGCTTCAAGTTC 62.446 66.667 7.42 0.00 0.00 3.01
1428 1458 2.637025 GCCGCGCTTCAAGTTCAA 59.363 55.556 5.56 0.00 0.00 2.69
1429 1459 1.725973 GCCGCGCTTCAAGTTCAAC 60.726 57.895 5.56 0.00 0.00 3.18
1430 1460 1.082104 CCGCGCTTCAAGTTCAACC 60.082 57.895 5.56 0.00 0.00 3.77
1431 1461 1.438710 CGCGCTTCAAGTTCAACCG 60.439 57.895 5.56 0.00 0.00 4.44
1432 1462 1.725973 GCGCTTCAAGTTCAACCGC 60.726 57.895 0.00 0.00 0.00 5.68
1434 1464 0.238289 CGCTTCAAGTTCAACCGCAT 59.762 50.000 0.00 0.00 0.00 4.73
1449 1506 2.568090 CATGTTTCCCGTGCAGGC 59.432 61.111 0.00 0.00 39.21 4.85
1660 2045 2.351244 CCTCAGCAGCCTGACGGTA 61.351 63.158 0.00 0.00 42.98 4.02
1824 2211 1.229082 ACAAGGCCCTCGACTACCA 60.229 57.895 0.00 0.00 0.00 3.25
1825 2212 0.617820 ACAAGGCCCTCGACTACCAT 60.618 55.000 0.00 0.00 0.00 3.55
1990 2377 1.207329 GTGGCGTACCTCCTGAAGATT 59.793 52.381 1.15 0.00 36.63 2.40
1991 2378 1.207089 TGGCGTACCTCCTGAAGATTG 59.793 52.381 1.15 0.00 36.63 2.67
1994 2381 2.094182 GCGTACCTCCTGAAGATTGTCA 60.094 50.000 0.00 0.00 0.00 3.58
1995 2382 3.512680 CGTACCTCCTGAAGATTGTCAC 58.487 50.000 0.00 0.00 0.00 3.67
1996 2383 2.751166 ACCTCCTGAAGATTGTCACG 57.249 50.000 0.00 0.00 0.00 4.35
1997 2384 1.276421 ACCTCCTGAAGATTGTCACGG 59.724 52.381 0.00 0.00 0.00 4.94
1998 2385 1.406069 CCTCCTGAAGATTGTCACGGG 60.406 57.143 0.00 0.00 0.00 5.28
1999 2386 0.036388 TCCTGAAGATTGTCACGGGC 60.036 55.000 0.00 0.00 0.00 6.13
2002 2389 2.046314 AAGATTGTCACGGGCGGG 60.046 61.111 0.00 0.00 0.00 6.13
2035 2422 4.754667 GACGTGGCCGGGTTCCTC 62.755 72.222 2.18 0.00 38.78 3.71
2065 2460 0.397254 AGTACTACCTCGGCCAGCAT 60.397 55.000 2.24 0.00 0.00 3.79
2071 2466 1.050988 ACCTCGGCCAGCATGTCTAT 61.051 55.000 2.24 0.00 0.00 1.98
2074 2469 1.001746 CTCGGCCAGCATGTCTATGAT 59.998 52.381 2.24 0.00 36.36 2.45
2305 2721 2.070262 TCAGAATCACACACGAGCAG 57.930 50.000 0.00 0.00 0.00 4.24
2344 2763 1.672356 GTGCAACGGACTCATGCCT 60.672 57.895 0.00 0.00 39.31 4.75
2345 2764 1.073025 TGCAACGGACTCATGCCTT 59.927 52.632 0.00 0.00 39.31 4.35
2350 2769 2.586792 GGACTCATGCCTTCCGCT 59.413 61.111 0.00 0.00 38.78 5.52
2351 2770 1.823295 GGACTCATGCCTTCCGCTA 59.177 57.895 0.00 0.00 38.78 4.26
2361 2780 1.499049 CCTTCCGCTACCGCTTAATC 58.501 55.000 0.00 0.00 0.00 1.75
2388 3453 1.731709 CTTGCGTCGATCATTGGTCAA 59.268 47.619 0.00 0.00 0.00 3.18
2389 3454 1.358877 TGCGTCGATCATTGGTCAAG 58.641 50.000 0.00 0.00 0.00 3.02
2409 3959 7.117092 GGTCAAGAGTTGAGAAGATTGTTACTC 59.883 40.741 0.00 0.00 41.01 2.59
2453 4028 2.574322 CGTTTGTTTTCCTCATCGCAG 58.426 47.619 0.00 0.00 0.00 5.18
2504 4099 5.588240 TGCATTGTAGTAGTAATCAGACCG 58.412 41.667 0.00 0.00 0.00 4.79
2511 4106 4.342359 AGTAGTAATCAGACCGTCCAGTT 58.658 43.478 0.00 0.00 0.00 3.16
2525 4124 4.450080 CCGTCCAGTTAAGGTTTTAGTGAC 59.550 45.833 0.00 0.00 0.00 3.67
2583 4226 7.764443 GCAGTATGTATAAACTTCCAGTCAAGA 59.236 37.037 0.00 0.00 39.31 3.02
2637 4280 9.944663 TCATAAGTAATGTTTTTGTCAACTGTC 57.055 29.630 0.00 0.00 36.89 3.51
2690 4339 1.479573 GGATCATCCTCGGACTCCTGA 60.480 57.143 0.00 0.00 32.53 3.86
2709 4360 7.093465 ACTCCTGAATCTGAATGATGCATTTTT 60.093 33.333 0.00 0.00 39.84 1.94
2743 4397 9.435688 CTCCAACATCGGATATATTATTTGTCA 57.564 33.333 0.00 0.00 33.56 3.58
2763 4417 2.659244 GGACGTGTCCGCGAACAA 60.659 61.111 8.23 0.00 40.36 2.83
2819 4473 5.273944 ACCGTAAATCTTCGTCCGTAATAC 58.726 41.667 0.00 0.00 0.00 1.89
2898 4602 7.019418 CCGTTCAGCTAAACTAATTTGTAACC 58.981 38.462 0.00 0.00 0.00 2.85
2899 4603 7.308109 CCGTTCAGCTAAACTAATTTGTAACCA 60.308 37.037 0.00 0.00 0.00 3.67
2920 4624 0.319040 CGATGACCTCGTATGCCTGG 60.319 60.000 0.00 0.00 42.56 4.45
2951 4665 2.590575 CGGCACCAAAGGACACGT 60.591 61.111 0.00 0.00 0.00 4.49
2952 4666 2.604174 CGGCACCAAAGGACACGTC 61.604 63.158 0.00 0.00 0.00 4.34
2992 4706 4.314440 GCCACCTGGTGCTCGTCA 62.314 66.667 21.47 0.00 37.57 4.35
3007 4721 1.293498 GTCAAGAAGCCGCTCTCCA 59.707 57.895 0.00 0.00 0.00 3.86
3018 4732 1.626686 CGCTCTCCACATCCTCCTAT 58.373 55.000 0.00 0.00 0.00 2.57
3029 4743 1.065928 CCTCCTATGTCGTGCGGAC 59.934 63.158 0.00 0.00 46.27 4.79
3089 4803 1.604593 CCTTGCCCTTGTCACCTGG 60.605 63.158 0.00 0.00 0.00 4.45
3125 4843 1.159713 TCAAGGCAACACAGTCGCTG 61.160 55.000 5.47 5.47 41.41 5.18
3133 4851 3.911698 ACAGTCGCTGCGTGGACA 61.912 61.111 22.48 0.00 34.37 4.02
3150 4873 2.026822 GGACATCTCTGTGGTGGTCATT 60.027 50.000 0.00 0.00 35.14 2.57
3162 4885 1.290955 GGTCATTGACCGGTCACGA 59.709 57.895 36.40 29.97 43.14 4.35
3175 4898 1.451567 TCACGAGTCTAGGCCTCCG 60.452 63.158 9.68 9.23 0.00 4.63
3205 4928 2.280524 CCGCGGTGTTGGACTTCA 60.281 61.111 19.50 0.00 0.00 3.02
3214 4937 2.869801 GTGTTGGACTTCATGAACGTCA 59.130 45.455 25.73 14.19 0.00 4.35
3226 4949 3.165160 AACGTCACCTTCTGCGCCT 62.165 57.895 4.18 0.00 0.00 5.52
3232 4955 3.393970 CCTTCTGCGCCTCTCCCA 61.394 66.667 4.18 0.00 0.00 4.37
3233 4956 2.739996 CCTTCTGCGCCTCTCCCAT 61.740 63.158 4.18 0.00 0.00 4.00
3236 4959 3.842923 CTGCGCCTCTCCCATCGT 61.843 66.667 4.18 0.00 0.00 3.73
3282 5005 3.195182 CCTATGTCGAGATGATGCTCCAT 59.805 47.826 5.12 0.00 0.00 3.41
3283 5006 4.400567 CCTATGTCGAGATGATGCTCCATA 59.599 45.833 5.12 0.00 0.00 2.74
3285 5008 4.879197 TGTCGAGATGATGCTCCATAAT 57.121 40.909 0.00 0.00 0.00 1.28
3292 5015 4.350225 AGATGATGCTCCATAATGAGGTGT 59.650 41.667 0.00 0.00 32.81 4.16
3294 5017 2.042686 TGCTCCATAATGAGGTGTGC 57.957 50.000 0.00 0.00 32.81 4.57
3295 5018 1.312815 GCTCCATAATGAGGTGTGCC 58.687 55.000 0.00 0.00 32.81 5.01
3329 5053 1.133761 CCATCGAGGTAGTGGAGGAGA 60.134 57.143 0.00 0.00 34.94 3.71
3331 5055 0.107800 TCGAGGTAGTGGAGGAGACG 60.108 60.000 0.00 0.00 0.00 4.18
3360 5092 3.626996 CTCCTTCACGGCCATGGCA 62.627 63.158 36.56 15.10 44.11 4.92
3362 5094 2.360350 CTTCACGGCCATGGCACT 60.360 61.111 36.56 18.91 44.11 4.40
3379 5111 2.726691 CTTTAGCCGTGCCACGACG 61.727 63.158 20.57 3.70 46.05 5.12
3420 5152 1.068127 ACGCGGCGTCCTATTAGAAAT 59.932 47.619 24.03 0.00 33.69 2.17
3432 5164 9.210426 CGTCCTATTAGAAATGTTTCAAAATCG 57.790 33.333 8.09 4.15 39.61 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.182570 TCATGAAGCATCCTCACAAAAAGAG 59.817 40.000 0.00 0.00 0.00 2.85
2 3 5.072055 TCATGAAGCATCCTCACAAAAAGA 58.928 37.500 0.00 0.00 0.00 2.52
4 5 5.713389 AGATCATGAAGCATCCTCACAAAAA 59.287 36.000 0.00 0.00 0.00 1.94
6 7 4.851843 AGATCATGAAGCATCCTCACAAA 58.148 39.130 0.00 0.00 0.00 2.83
9 10 4.339872 AGAGATCATGAAGCATCCTCAC 57.660 45.455 0.00 0.00 0.00 3.51
10 11 4.163649 ACAAGAGATCATGAAGCATCCTCA 59.836 41.667 0.00 0.00 0.00 3.86
11 12 4.512198 CACAAGAGATCATGAAGCATCCTC 59.488 45.833 0.00 0.45 0.00 3.71
12 13 4.080469 ACACAAGAGATCATGAAGCATCCT 60.080 41.667 0.00 0.00 0.00 3.24
13 14 4.197750 ACACAAGAGATCATGAAGCATCC 58.802 43.478 0.00 0.00 0.00 3.51
15 16 6.883217 ACTAAACACAAGAGATCATGAAGCAT 59.117 34.615 0.00 0.00 0.00 3.79
16 17 6.233434 ACTAAACACAAGAGATCATGAAGCA 58.767 36.000 0.00 0.00 0.00 3.91
17 18 6.369890 TGACTAAACACAAGAGATCATGAAGC 59.630 38.462 0.00 0.00 0.00 3.86
18 19 7.895975 TGACTAAACACAAGAGATCATGAAG 57.104 36.000 0.00 0.00 0.00 3.02
19 20 7.933577 AGTTGACTAAACACAAGAGATCATGAA 59.066 33.333 0.00 0.00 41.61 2.57
20 21 7.445121 AGTTGACTAAACACAAGAGATCATGA 58.555 34.615 0.00 0.00 41.61 3.07
21 22 7.664082 AGTTGACTAAACACAAGAGATCATG 57.336 36.000 0.00 0.00 41.61 3.07
24 25 9.026074 GCTATAGTTGACTAAACACAAGAGATC 57.974 37.037 0.84 0.00 41.61 2.75
25 26 7.982354 GGCTATAGTTGACTAAACACAAGAGAT 59.018 37.037 0.84 0.00 41.61 2.75
27 28 6.253727 CGGCTATAGTTGACTAAACACAAGAG 59.746 42.308 0.84 0.00 41.61 2.85
28 29 6.097356 CGGCTATAGTTGACTAAACACAAGA 58.903 40.000 0.84 0.00 41.61 3.02
29 30 5.220416 GCGGCTATAGTTGACTAAACACAAG 60.220 44.000 0.84 0.00 41.61 3.16
30 31 4.628333 GCGGCTATAGTTGACTAAACACAA 59.372 41.667 0.84 0.00 41.61 3.33
31 32 4.081862 AGCGGCTATAGTTGACTAAACACA 60.082 41.667 0.00 0.00 41.61 3.72
34 35 3.802685 CCAGCGGCTATAGTTGACTAAAC 59.197 47.826 0.26 0.00 39.24 2.01
35 36 3.449737 ACCAGCGGCTATAGTTGACTAAA 59.550 43.478 0.26 0.00 31.39 1.85
36 37 3.028850 ACCAGCGGCTATAGTTGACTAA 58.971 45.455 0.26 0.00 31.39 2.24
37 38 2.662866 ACCAGCGGCTATAGTTGACTA 58.337 47.619 0.26 0.00 0.00 2.59
39 40 3.662247 ATACCAGCGGCTATAGTTGAC 57.338 47.619 0.26 0.00 0.00 3.18
40 41 4.344102 AGAAATACCAGCGGCTATAGTTGA 59.656 41.667 0.26 0.00 0.00 3.18
41 42 4.632153 AGAAATACCAGCGGCTATAGTTG 58.368 43.478 0.26 0.00 0.00 3.16
42 43 4.558898 CGAGAAATACCAGCGGCTATAGTT 60.559 45.833 0.26 3.97 0.00 2.24
43 44 3.057456 CGAGAAATACCAGCGGCTATAGT 60.057 47.826 0.26 3.34 0.00 2.12
44 45 3.057456 ACGAGAAATACCAGCGGCTATAG 60.057 47.826 0.26 0.00 0.00 1.31
45 46 2.889045 ACGAGAAATACCAGCGGCTATA 59.111 45.455 0.26 0.00 0.00 1.31
46 47 1.687123 ACGAGAAATACCAGCGGCTAT 59.313 47.619 0.26 0.00 0.00 2.97
47 48 1.108776 ACGAGAAATACCAGCGGCTA 58.891 50.000 0.26 0.00 0.00 3.93
48 49 0.460284 CACGAGAAATACCAGCGGCT 60.460 55.000 0.00 0.00 0.00 5.52
49 50 0.459585 TCACGAGAAATACCAGCGGC 60.460 55.000 0.00 0.00 0.00 6.53
50 51 1.134367 TCTCACGAGAAATACCAGCGG 59.866 52.381 0.00 0.00 33.91 5.52
51 52 2.561733 TCTCACGAGAAATACCAGCG 57.438 50.000 0.00 0.00 33.91 5.18
70 71 8.450305 CCTGCCAGGAGAAAGGTAACTAAAATT 61.450 40.741 4.15 0.00 43.11 1.82
71 72 7.028955 CCTGCCAGGAGAAAGGTAACTAAAAT 61.029 42.308 4.15 0.00 43.11 1.82
72 73 5.747842 CCTGCCAGGAGAAAGGTAACTAAAA 60.748 44.000 4.15 0.00 43.11 1.52
73 74 4.263331 CCTGCCAGGAGAAAGGTAACTAAA 60.263 45.833 4.15 0.00 43.11 1.85
74 75 3.263425 CCTGCCAGGAGAAAGGTAACTAA 59.737 47.826 4.15 0.00 43.11 2.24
76 77 1.630878 CCTGCCAGGAGAAAGGTAACT 59.369 52.381 4.15 0.00 45.56 2.24
78 79 1.742308 ACCTGCCAGGAGAAAGGTAA 58.258 50.000 19.90 0.00 41.28 2.85
79 80 1.351017 CAACCTGCCAGGAGAAAGGTA 59.649 52.381 19.90 0.00 42.25 3.08
80 81 0.111253 CAACCTGCCAGGAGAAAGGT 59.889 55.000 19.90 0.00 45.01 3.50
81 82 0.401738 TCAACCTGCCAGGAGAAAGG 59.598 55.000 19.90 0.00 37.67 3.11
83 84 2.091885 ACTTTCAACCTGCCAGGAGAAA 60.092 45.455 19.90 22.71 37.67 2.52
85 86 1.140312 ACTTTCAACCTGCCAGGAGA 58.860 50.000 19.90 12.11 37.67 3.71
86 87 1.242076 CACTTTCAACCTGCCAGGAG 58.758 55.000 19.90 9.73 37.67 3.69
87 88 0.178992 CCACTTTCAACCTGCCAGGA 60.179 55.000 19.90 0.00 37.67 3.86
89 90 0.468029 ACCCACTTTCAACCTGCCAG 60.468 55.000 0.00 0.00 0.00 4.85
90 91 0.467290 GACCCACTTTCAACCTGCCA 60.467 55.000 0.00 0.00 0.00 4.92
91 92 1.515521 CGACCCACTTTCAACCTGCC 61.516 60.000 0.00 0.00 0.00 4.85
92 93 1.515521 CCGACCCACTTTCAACCTGC 61.516 60.000 0.00 0.00 0.00 4.85
93 94 0.889186 CCCGACCCACTTTCAACCTG 60.889 60.000 0.00 0.00 0.00 4.00
94 95 1.454539 CCCGACCCACTTTCAACCT 59.545 57.895 0.00 0.00 0.00 3.50
95 96 2.265904 GCCCGACCCACTTTCAACC 61.266 63.158 0.00 0.00 0.00 3.77
96 97 0.893727 ATGCCCGACCCACTTTCAAC 60.894 55.000 0.00 0.00 0.00 3.18
97 98 0.893270 CATGCCCGACCCACTTTCAA 60.893 55.000 0.00 0.00 0.00 2.69
98 99 1.303236 CATGCCCGACCCACTTTCA 60.303 57.895 0.00 0.00 0.00 2.69
100 101 2.676471 GCATGCCCGACCCACTTT 60.676 61.111 6.36 0.00 0.00 2.66
102 103 4.415150 CAGCATGCCCGACCCACT 62.415 66.667 15.66 0.00 0.00 4.00
113 114 1.227234 TACGGTGATCGGCAGCATG 60.227 57.895 0.00 0.00 45.15 4.06
114 115 1.227263 GTACGGTGATCGGCAGCAT 60.227 57.895 0.00 0.00 45.15 3.79
115 116 2.183300 GTACGGTGATCGGCAGCA 59.817 61.111 0.00 0.00 45.15 4.41
117 118 1.226974 CAGGTACGGTGATCGGCAG 60.227 63.158 0.00 0.00 44.45 4.85
118 119 2.889617 CAGGTACGGTGATCGGCA 59.110 61.111 0.00 0.00 44.45 5.69
119 120 2.585247 GCAGGTACGGTGATCGGC 60.585 66.667 0.00 0.00 44.45 5.54
120 121 1.226974 CAGCAGGTACGGTGATCGG 60.227 63.158 0.00 0.00 44.45 4.18
122 123 1.084370 GTGCAGCAGGTACGGTGATC 61.084 60.000 0.00 0.00 36.48 2.92
123 124 1.079127 GTGCAGCAGGTACGGTGAT 60.079 57.895 0.00 0.00 36.48 3.06
126 127 2.030562 GTGTGCAGCAGGTACGGT 59.969 61.111 0.00 0.00 34.44 4.83
129 130 1.515521 GGGTTGTGTGCAGCAGGTAC 61.516 60.000 0.00 0.00 0.00 3.34
130 131 1.228124 GGGTTGTGTGCAGCAGGTA 60.228 57.895 0.00 0.00 0.00 3.08
131 132 2.519302 GGGTTGTGTGCAGCAGGT 60.519 61.111 0.00 0.00 0.00 4.00
133 134 3.297620 GGGGGTTGTGTGCAGCAG 61.298 66.667 0.00 0.00 0.00 4.24
147 148 6.951971 AGAGATAATCAATTAATCGAGGGGG 58.048 40.000 0.00 0.00 0.00 5.40
148 149 8.754080 AGTAGAGATAATCAATTAATCGAGGGG 58.246 37.037 0.00 0.00 0.00 4.79
150 151 9.796120 GGAGTAGAGATAATCAATTAATCGAGG 57.204 37.037 0.00 0.00 0.00 4.63
166 167 8.041143 ACTGAGTCACTTATAGGAGTAGAGAT 57.959 38.462 0.00 0.00 0.00 2.75
167 168 7.440505 ACTGAGTCACTTATAGGAGTAGAGA 57.559 40.000 0.00 0.00 0.00 3.10
168 169 7.012894 CCAACTGAGTCACTTATAGGAGTAGAG 59.987 44.444 0.00 0.00 0.00 2.43
169 170 6.829298 CCAACTGAGTCACTTATAGGAGTAGA 59.171 42.308 0.00 0.00 0.00 2.59
170 171 6.603997 ACCAACTGAGTCACTTATAGGAGTAG 59.396 42.308 0.00 0.00 0.00 2.57
172 173 5.186021 CACCAACTGAGTCACTTATAGGAGT 59.814 44.000 0.00 0.00 0.00 3.85
173 174 5.419155 TCACCAACTGAGTCACTTATAGGAG 59.581 44.000 0.00 0.00 0.00 3.69
174 175 5.330233 TCACCAACTGAGTCACTTATAGGA 58.670 41.667 0.00 0.00 0.00 2.94
175 176 5.661056 TCACCAACTGAGTCACTTATAGG 57.339 43.478 0.00 0.00 0.00 2.57
176 177 6.867550 TCATCACCAACTGAGTCACTTATAG 58.132 40.000 0.00 0.00 30.20 1.31
177 178 6.850752 TCATCACCAACTGAGTCACTTATA 57.149 37.500 0.00 0.00 30.20 0.98
178 179 5.745312 TCATCACCAACTGAGTCACTTAT 57.255 39.130 0.00 0.00 30.20 1.73
179 180 5.482006 CATCATCACCAACTGAGTCACTTA 58.518 41.667 0.00 0.00 30.20 2.24
181 182 3.307269 CCATCATCACCAACTGAGTCACT 60.307 47.826 0.00 0.00 30.20 3.41
183 184 2.639347 ACCATCATCACCAACTGAGTCA 59.361 45.455 0.00 0.00 30.20 3.41
185 186 2.373169 ACACCATCATCACCAACTGAGT 59.627 45.455 0.00 0.00 30.20 3.41
186 187 2.745821 CACACCATCATCACCAACTGAG 59.254 50.000 0.00 0.00 30.20 3.35
187 188 2.106338 ACACACCATCATCACCAACTGA 59.894 45.455 0.00 0.00 0.00 3.41
188 189 2.485426 GACACACCATCATCACCAACTG 59.515 50.000 0.00 0.00 0.00 3.16
189 190 2.373169 AGACACACCATCATCACCAACT 59.627 45.455 0.00 0.00 0.00 3.16
190 191 2.783135 AGACACACCATCATCACCAAC 58.217 47.619 0.00 0.00 0.00 3.77
191 192 4.224818 TGATAGACACACCATCATCACCAA 59.775 41.667 0.00 0.00 0.00 3.67
192 193 3.774216 TGATAGACACACCATCATCACCA 59.226 43.478 0.00 0.00 0.00 4.17
193 194 4.406648 TGATAGACACACCATCATCACC 57.593 45.455 0.00 0.00 0.00 4.02
198 199 3.031013 ACGGATGATAGACACACCATCA 58.969 45.455 0.00 0.00 37.67 3.07
199 200 3.735237 ACGGATGATAGACACACCATC 57.265 47.619 0.00 0.00 35.81 3.51
200 201 5.808366 ATAACGGATGATAGACACACCAT 57.192 39.130 0.00 0.00 0.00 3.55
204 205 7.107639 TCAGAAATAACGGATGATAGACACA 57.892 36.000 0.00 0.00 0.00 3.72
206 207 7.951591 TGATCAGAAATAACGGATGATAGACA 58.048 34.615 0.00 0.00 30.98 3.41
212 213 9.645059 GATCTAATGATCAGAAATAACGGATGA 57.355 33.333 0.09 0.00 46.20 2.92
232 233 3.713288 CGGTTGTTAGATGCGGATCTAA 58.287 45.455 28.98 28.98 45.23 2.10
233 234 2.545113 GCGGTTGTTAGATGCGGATCTA 60.545 50.000 21.26 21.26 39.76 1.98
236 237 1.151777 CGCGGTTGTTAGATGCGGAT 61.152 55.000 0.00 0.00 44.65 4.18
237 238 1.807981 CGCGGTTGTTAGATGCGGA 60.808 57.895 0.00 0.00 44.65 5.54
238 239 2.701006 CGCGGTTGTTAGATGCGG 59.299 61.111 0.00 0.00 44.65 5.69
240 241 0.739813 ACCTCGCGGTTGTTAGATGC 60.740 55.000 6.13 0.00 42.13 3.91
241 242 2.572191 TACCTCGCGGTTGTTAGATG 57.428 50.000 6.13 0.00 42.13 2.90
242 243 2.494870 ACTTACCTCGCGGTTGTTAGAT 59.505 45.455 6.13 0.00 42.13 1.98
244 245 2.358939 ACTTACCTCGCGGTTGTTAG 57.641 50.000 6.13 7.13 42.13 2.34
245 246 2.224018 ACAACTTACCTCGCGGTTGTTA 60.224 45.455 19.16 3.52 46.39 2.41
246 247 1.223187 CAACTTACCTCGCGGTTGTT 58.777 50.000 6.13 6.12 42.13 2.83
247 248 0.105408 ACAACTTACCTCGCGGTTGT 59.895 50.000 19.16 19.16 42.13 3.32
249 250 0.601841 CCACAACTTACCTCGCGGTT 60.602 55.000 6.13 0.00 42.13 4.44
252 253 2.388232 GGCCACAACTTACCTCGCG 61.388 63.158 0.00 0.00 0.00 5.87
253 254 0.605589 AAGGCCACAACTTACCTCGC 60.606 55.000 5.01 0.00 0.00 5.03
256 257 2.102420 GCAAAAAGGCCACAACTTACCT 59.898 45.455 5.01 0.00 0.00 3.08
257 258 2.159028 TGCAAAAAGGCCACAACTTACC 60.159 45.455 5.01 0.00 0.00 2.85
258 259 3.172229 TGCAAAAAGGCCACAACTTAC 57.828 42.857 5.01 0.00 0.00 2.34
259 260 3.055819 TGTTGCAAAAAGGCCACAACTTA 60.056 39.130 5.01 0.00 40.88 2.24
260 261 2.289945 TGTTGCAAAAAGGCCACAACTT 60.290 40.909 5.01 0.00 40.88 2.66
261 262 1.277557 TGTTGCAAAAAGGCCACAACT 59.722 42.857 5.01 0.00 40.88 3.16
262 263 1.731720 TGTTGCAAAAAGGCCACAAC 58.268 45.000 5.01 9.90 36.61 3.32
263 264 2.479566 TTGTTGCAAAAAGGCCACAA 57.520 40.000 5.01 0.35 44.21 3.33
264 265 2.706339 ATTGTTGCAAAAAGGCCACA 57.294 40.000 5.01 0.00 37.62 4.17
265 266 3.249799 GGTTATTGTTGCAAAAAGGCCAC 59.750 43.478 5.01 1.95 0.00 5.01
266 267 3.471680 GGTTATTGTTGCAAAAAGGCCA 58.528 40.909 5.01 0.00 0.00 5.36
267 268 2.811431 GGGTTATTGTTGCAAAAAGGCC 59.189 45.455 8.28 9.18 0.00 5.19
268 269 2.478514 CGGGTTATTGTTGCAAAAAGGC 59.521 45.455 8.28 0.66 0.00 4.35
270 271 3.389221 AGCGGGTTATTGTTGCAAAAAG 58.611 40.909 8.28 0.00 0.00 2.27
271 272 3.460857 AGCGGGTTATTGTTGCAAAAA 57.539 38.095 4.10 4.10 0.00 1.94
272 273 3.068873 AGAAGCGGGTTATTGTTGCAAAA 59.931 39.130 0.00 0.00 0.00 2.44
273 274 2.625790 AGAAGCGGGTTATTGTTGCAAA 59.374 40.909 0.00 0.00 0.00 3.68
274 275 2.227865 GAGAAGCGGGTTATTGTTGCAA 59.772 45.455 0.00 0.00 0.00 4.08
275 276 1.810151 GAGAAGCGGGTTATTGTTGCA 59.190 47.619 0.00 0.00 0.00 4.08
277 278 2.159517 GCAGAGAAGCGGGTTATTGTTG 60.160 50.000 0.00 0.00 0.00 3.33
278 279 2.084546 GCAGAGAAGCGGGTTATTGTT 58.915 47.619 0.00 0.00 0.00 2.83
279 280 1.279271 AGCAGAGAAGCGGGTTATTGT 59.721 47.619 0.00 0.00 40.15 2.71
280 281 1.936547 GAGCAGAGAAGCGGGTTATTG 59.063 52.381 0.00 0.00 40.15 1.90
282 283 0.466124 GGAGCAGAGAAGCGGGTTAT 59.534 55.000 0.00 0.00 40.15 1.89
283 284 0.902984 TGGAGCAGAGAAGCGGGTTA 60.903 55.000 0.00 0.00 40.15 2.85
284 285 1.768684 TTGGAGCAGAGAAGCGGGTT 61.769 55.000 0.00 0.00 40.15 4.11
285 286 1.557269 ATTGGAGCAGAGAAGCGGGT 61.557 55.000 0.00 0.00 40.15 5.28
286 287 0.393537 AATTGGAGCAGAGAAGCGGG 60.394 55.000 0.00 0.00 40.15 6.13
287 288 1.131883 CAAATTGGAGCAGAGAAGCGG 59.868 52.381 0.00 0.00 40.15 5.52
288 289 1.467035 GCAAATTGGAGCAGAGAAGCG 60.467 52.381 0.00 0.00 40.15 4.68
289 290 1.542915 TGCAAATTGGAGCAGAGAAGC 59.457 47.619 0.00 0.00 35.51 3.86
297 298 1.203287 GGGTTCTCTGCAAATTGGAGC 59.797 52.381 9.74 0.00 35.65 4.70
298 299 1.821136 GGGGTTCTCTGCAAATTGGAG 59.179 52.381 8.26 8.26 37.15 3.86
299 300 1.428912 AGGGGTTCTCTGCAAATTGGA 59.571 47.619 0.00 0.00 0.00 3.53
300 301 1.821136 GAGGGGTTCTCTGCAAATTGG 59.179 52.381 0.00 0.00 39.38 3.16
301 302 1.821136 GGAGGGGTTCTCTGCAAATTG 59.179 52.381 0.00 0.00 42.10 2.32
302 303 1.713078 AGGAGGGGTTCTCTGCAAATT 59.287 47.619 0.00 0.00 42.10 1.82
303 304 1.005215 CAGGAGGGGTTCTCTGCAAAT 59.995 52.381 0.00 0.00 42.10 2.32
304 305 0.401738 CAGGAGGGGTTCTCTGCAAA 59.598 55.000 0.00 0.00 42.10 3.68
305 306 2.069776 CAGGAGGGGTTCTCTGCAA 58.930 57.895 0.00 0.00 42.10 4.08
306 307 2.596851 GCAGGAGGGGTTCTCTGCA 61.597 63.158 8.98 0.00 41.70 4.41
307 308 2.270527 GCAGGAGGGGTTCTCTGC 59.729 66.667 0.00 0.00 42.10 4.26
309 310 1.614824 CAGGCAGGAGGGGTTCTCT 60.615 63.158 0.00 0.00 42.10 3.10
312 313 3.732849 CCCAGGCAGGAGGGGTTC 61.733 72.222 0.00 0.00 41.58 3.62
328 329 2.828549 CCTATTGTGTGGGCCGCC 60.829 66.667 15.75 0.00 0.00 6.13
329 330 2.828549 CCCTATTGTGTGGGCCGC 60.829 66.667 10.94 10.94 36.61 6.53
330 331 1.451387 GTCCCTATTGTGTGGGCCG 60.451 63.158 0.00 0.00 43.04 6.13
331 332 1.076995 GGTCCCTATTGTGTGGGCC 60.077 63.158 0.00 0.00 43.04 5.80
332 333 0.107165 GAGGTCCCTATTGTGTGGGC 60.107 60.000 0.00 0.00 43.04 5.36
333 334 0.546598 GGAGGTCCCTATTGTGTGGG 59.453 60.000 0.00 0.00 44.66 4.61
334 335 1.584724 AGGAGGTCCCTATTGTGTGG 58.415 55.000 0.00 0.00 45.48 4.17
343 344 2.383477 GGGCCGTATAGGAGGTCCCT 62.383 65.000 0.00 0.00 46.28 4.20
344 345 1.912264 GGGCCGTATAGGAGGTCCC 60.912 68.421 0.00 4.24 46.28 4.46
345 346 3.788807 GGGCCGTATAGGAGGTCC 58.211 66.667 0.00 0.00 45.95 4.46
346 347 0.112801 AGAGGGCCGTATAGGAGGTC 59.887 60.000 0.00 0.00 45.00 3.85
347 348 0.178958 CAGAGGGCCGTATAGGAGGT 60.179 60.000 0.00 0.00 45.00 3.85
348 349 1.536943 GCAGAGGGCCGTATAGGAGG 61.537 65.000 0.00 0.00 45.00 4.30
349 350 1.867919 CGCAGAGGGCCGTATAGGAG 61.868 65.000 0.00 0.00 45.00 3.69
350 351 1.901948 CGCAGAGGGCCGTATAGGA 60.902 63.158 0.00 0.00 45.00 2.94
352 353 1.007271 CACGCAGAGGGCCGTATAG 60.007 63.158 0.00 0.00 40.31 1.31
354 355 4.530857 GCACGCAGAGGGCCGTAT 62.531 66.667 0.00 0.00 45.50 3.06
360 361 1.881903 TTCTCTCAGCACGCAGAGGG 61.882 60.000 11.01 8.17 37.37 4.30
361 362 0.458197 CTTCTCTCAGCACGCAGAGG 60.458 60.000 11.01 3.33 37.37 3.69
362 363 0.525311 TCTTCTCTCAGCACGCAGAG 59.475 55.000 5.16 5.16 38.01 3.35
363 364 1.180907 ATCTTCTCTCAGCACGCAGA 58.819 50.000 0.00 0.00 0.00 4.26
364 365 2.007360 AATCTTCTCTCAGCACGCAG 57.993 50.000 0.00 0.00 0.00 5.18
367 368 3.867493 TGCATAAATCTTCTCTCAGCACG 59.133 43.478 0.00 0.00 0.00 5.34
368 369 4.260132 CGTGCATAAATCTTCTCTCAGCAC 60.260 45.833 0.00 0.00 44.45 4.40
369 370 3.867493 CGTGCATAAATCTTCTCTCAGCA 59.133 43.478 0.00 0.00 0.00 4.41
371 372 6.246449 CAAACGTGCATAAATCTTCTCTCAG 58.754 40.000 0.00 0.00 0.00 3.35
372 373 5.122239 CCAAACGTGCATAAATCTTCTCTCA 59.878 40.000 0.00 0.00 0.00 3.27
375 376 4.662145 CCCAAACGTGCATAAATCTTCTC 58.338 43.478 0.00 0.00 0.00 2.87
376 377 3.119495 GCCCAAACGTGCATAAATCTTCT 60.119 43.478 0.00 0.00 0.00 2.85
377 378 3.179048 GCCCAAACGTGCATAAATCTTC 58.821 45.455 0.00 0.00 0.00 2.87
378 379 2.094234 GGCCCAAACGTGCATAAATCTT 60.094 45.455 0.00 0.00 0.00 2.40
380 381 1.797348 CGGCCCAAACGTGCATAAATC 60.797 52.381 0.00 0.00 0.00 2.17
381 382 0.172352 CGGCCCAAACGTGCATAAAT 59.828 50.000 0.00 0.00 0.00 1.40
382 383 1.581954 CGGCCCAAACGTGCATAAA 59.418 52.632 0.00 0.00 0.00 1.40
396 397 4.067913 CACACAAATGGGCCGGCC 62.068 66.667 38.57 38.57 0.00 6.13
402 403 2.990967 AGGCCGCACACAAATGGG 60.991 61.111 0.00 0.00 0.00 4.00
403 404 2.086251 AACAGGCCGCACACAAATGG 62.086 55.000 0.00 0.00 0.00 3.16
404 405 0.249405 AAACAGGCCGCACACAAATG 60.249 50.000 0.00 0.00 0.00 2.32
405 406 0.463620 AAAACAGGCCGCACACAAAT 59.536 45.000 0.00 0.00 0.00 2.32
406 407 0.247736 AAAAACAGGCCGCACACAAA 59.752 45.000 0.00 0.00 0.00 2.83
408 409 3.609703 AAAAACAGGCCGCACACA 58.390 50.000 0.00 0.00 0.00 3.72
448 449 8.826710 GGAAAGGAAAGAAAAATGAAACGAAAT 58.173 29.630 0.00 0.00 0.00 2.17
451 452 6.127310 TGGGAAAGGAAAGAAAAATGAAACGA 60.127 34.615 0.00 0.00 0.00 3.85
453 454 8.450578 AATGGGAAAGGAAAGAAAAATGAAAC 57.549 30.769 0.00 0.00 0.00 2.78
457 458 8.685427 ACAAAAATGGGAAAGGAAAGAAAAATG 58.315 29.630 0.00 0.00 0.00 2.32
458 459 8.821686 ACAAAAATGGGAAAGGAAAGAAAAAT 57.178 26.923 0.00 0.00 0.00 1.82
460 461 8.642935 AAACAAAAATGGGAAAGGAAAGAAAA 57.357 26.923 0.00 0.00 0.00 2.29
461 462 8.642935 AAAACAAAAATGGGAAAGGAAAGAAA 57.357 26.923 0.00 0.00 0.00 2.52
577 578 9.689976 CACTAACATATTTGGAATTCACAAACA 57.310 29.630 18.39 11.49 40.25 2.83
578 579 9.906660 TCACTAACATATTTGGAATTCACAAAC 57.093 29.630 18.39 0.00 40.25 2.93
642 643 9.538508 CTTGACCTTTTCTCAATTTCTTGAAAT 57.461 29.630 3.04 3.04 40.78 2.17
643 644 8.748412 TCTTGACCTTTTCTCAATTTCTTGAAA 58.252 29.630 0.00 0.00 40.78 2.69
644 645 8.292444 TCTTGACCTTTTCTCAATTTCTTGAA 57.708 30.769 0.00 0.00 40.78 2.69
645 646 7.880160 TCTTGACCTTTTCTCAATTTCTTGA 57.120 32.000 0.00 0.00 39.07 3.02
646 647 9.538508 AAATCTTGACCTTTTCTCAATTTCTTG 57.461 29.630 0.00 0.00 0.00 3.02
648 649 9.538508 CAAAATCTTGACCTTTTCTCAATTTCT 57.461 29.630 0.00 0.00 34.14 2.52
650 651 9.889128 TTCAAAATCTTGACCTTTTCTCAATTT 57.111 25.926 0.00 0.00 41.34 1.82
651 652 9.889128 TTTCAAAATCTTGACCTTTTCTCAATT 57.111 25.926 0.00 0.00 41.34 2.32
653 654 9.717942 TTTTTCAAAATCTTGACCTTTTCTCAA 57.282 25.926 0.00 0.00 41.34 3.02
696 697 9.559958 GACGATTTATTCAATTTCATTCACAGT 57.440 29.630 0.00 0.00 0.00 3.55
699 700 9.559958 ACAGACGATTTATTCAATTTCATTCAC 57.440 29.630 0.00 0.00 0.00 3.18
700 701 9.773328 GACAGACGATTTATTCAATTTCATTCA 57.227 29.630 0.00 0.00 0.00 2.57
701 702 9.773328 TGACAGACGATTTATTCAATTTCATTC 57.227 29.630 0.00 0.00 0.00 2.67
754 755 9.410556 CGAACATCTTTTGAATTTTTAGGACAT 57.589 29.630 0.00 0.00 0.00 3.06
756 757 8.690840 CACGAACATCTTTTGAATTTTTAGGAC 58.309 33.333 0.00 0.00 0.00 3.85
757 758 8.625651 TCACGAACATCTTTTGAATTTTTAGGA 58.374 29.630 0.00 0.00 0.00 2.94
763 764 9.743057 TGTAATTCACGAACATCTTTTGAATTT 57.257 25.926 11.83 0.16 41.79 1.82
764 765 9.743057 TTGTAATTCACGAACATCTTTTGAATT 57.257 25.926 11.43 11.43 44.85 2.17
765 766 9.743057 TTTGTAATTCACGAACATCTTTTGAAT 57.257 25.926 0.00 0.00 38.30 2.57
767 768 9.743057 ATTTTGTAATTCACGAACATCTTTTGA 57.257 25.926 0.00 0.00 29.77 2.69
881 882 4.965200 TTCGGGAAATTGGTGGATTTTT 57.035 36.364 0.00 0.00 29.75 1.94
882 883 4.965200 TTTCGGGAAATTGGTGGATTTT 57.035 36.364 0.00 0.00 29.75 1.82
883 884 4.965200 TTTTCGGGAAATTGGTGGATTT 57.035 36.364 0.00 0.00 32.16 2.17
884 885 4.285775 ACATTTTCGGGAAATTGGTGGATT 59.714 37.500 16.09 0.00 35.79 3.01
885 886 3.837731 ACATTTTCGGGAAATTGGTGGAT 59.162 39.130 16.09 0.00 35.79 3.41
886 887 3.235200 ACATTTTCGGGAAATTGGTGGA 58.765 40.909 16.09 0.00 35.79 4.02
887 888 3.676291 ACATTTTCGGGAAATTGGTGG 57.324 42.857 16.09 0.00 35.79 4.61
901 902 9.113876 GTCATTTTTAGAATCGACGAACATTTT 57.886 29.630 0.00 0.00 0.00 1.82
902 903 8.504005 AGTCATTTTTAGAATCGACGAACATTT 58.496 29.630 0.00 0.00 0.00 2.32
903 904 7.957484 CAGTCATTTTTAGAATCGACGAACATT 59.043 33.333 0.00 0.00 0.00 2.71
904 905 7.456253 CAGTCATTTTTAGAATCGACGAACAT 58.544 34.615 0.00 0.00 0.00 2.71
905 906 6.617741 GCAGTCATTTTTAGAATCGACGAACA 60.618 38.462 0.00 0.00 0.00 3.18
906 907 5.728507 GCAGTCATTTTTAGAATCGACGAAC 59.271 40.000 0.00 0.00 0.00 3.95
907 908 5.637810 AGCAGTCATTTTTAGAATCGACGAA 59.362 36.000 0.00 0.00 0.00 3.85
908 909 5.062183 CAGCAGTCATTTTTAGAATCGACGA 59.938 40.000 0.00 0.00 0.00 4.20
909 910 5.062183 TCAGCAGTCATTTTTAGAATCGACG 59.938 40.000 0.00 0.00 0.00 5.12
910 911 6.408858 TCAGCAGTCATTTTTAGAATCGAC 57.591 37.500 0.00 0.00 0.00 4.20
911 912 7.334171 TGAATCAGCAGTCATTTTTAGAATCGA 59.666 33.333 0.00 0.00 0.00 3.59
912 913 7.466805 TGAATCAGCAGTCATTTTTAGAATCG 58.533 34.615 0.00 0.00 0.00 3.34
913 914 9.630098 TTTGAATCAGCAGTCATTTTTAGAATC 57.370 29.630 0.00 0.00 0.00 2.52
914 915 9.985730 TTTTGAATCAGCAGTCATTTTTAGAAT 57.014 25.926 0.00 0.00 0.00 2.40
1009 1010 7.655328 TGCGATTTTTAGGTCATGAACATTTTT 59.345 29.630 14.46 0.00 0.00 1.94
1011 1012 6.686630 TGCGATTTTTAGGTCATGAACATTT 58.313 32.000 14.46 0.00 0.00 2.32
1012 1013 6.266168 TGCGATTTTTAGGTCATGAACATT 57.734 33.333 14.46 0.00 0.00 2.71
1013 1014 5.895636 TGCGATTTTTAGGTCATGAACAT 57.104 34.783 14.46 0.00 0.00 2.71
1014 1015 5.697473 TTGCGATTTTTAGGTCATGAACA 57.303 34.783 14.46 0.00 0.00 3.18
1015 1016 7.581011 ATTTTGCGATTTTTAGGTCATGAAC 57.419 32.000 1.26 1.26 0.00 3.18
1016 1017 7.869937 TCAATTTTGCGATTTTTAGGTCATGAA 59.130 29.630 0.00 0.00 0.00 2.57
1017 1018 7.374272 TCAATTTTGCGATTTTTAGGTCATGA 58.626 30.769 0.00 0.00 0.00 3.07
1018 1019 7.329226 ACTCAATTTTGCGATTTTTAGGTCATG 59.671 33.333 0.00 0.00 0.00 3.07
1019 1020 7.378181 ACTCAATTTTGCGATTTTTAGGTCAT 58.622 30.769 0.00 0.00 0.00 3.06
1020 1021 6.744112 ACTCAATTTTGCGATTTTTAGGTCA 58.256 32.000 0.00 0.00 0.00 4.02
1021 1022 8.736751 TTACTCAATTTTGCGATTTTTAGGTC 57.263 30.769 0.00 0.00 0.00 3.85
1022 1023 9.705290 ATTTACTCAATTTTGCGATTTTTAGGT 57.295 25.926 0.00 0.00 0.00 3.08
1049 1050 7.742525 GCGTTGCCATTTTTAAAATTCGTAAAT 59.257 29.630 0.55 0.00 0.00 1.40
1050 1051 7.064064 GCGTTGCCATTTTTAAAATTCGTAAA 58.936 30.769 0.55 0.00 0.00 2.01
1051 1052 6.582264 GCGTTGCCATTTTTAAAATTCGTAA 58.418 32.000 0.55 0.00 0.00 3.18
1052 1053 5.164177 CGCGTTGCCATTTTTAAAATTCGTA 60.164 36.000 0.55 0.00 0.00 3.43
1053 1054 4.375506 CGCGTTGCCATTTTTAAAATTCGT 60.376 37.500 0.55 0.00 0.00 3.85
1054 1055 4.071570 CGCGTTGCCATTTTTAAAATTCG 58.928 39.130 0.55 0.00 0.00 3.34
1055 1056 3.837999 GCGCGTTGCCATTTTTAAAATTC 59.162 39.130 8.43 0.00 37.76 2.17
1056 1057 3.662973 CGCGCGTTGCCATTTTTAAAATT 60.663 39.130 24.19 0.00 42.08 1.82
1057 1058 2.159907 CGCGCGTTGCCATTTTTAAAAT 60.160 40.909 24.19 0.00 42.08 1.82
1058 1059 1.190323 CGCGCGTTGCCATTTTTAAAA 59.810 42.857 24.19 0.00 42.08 1.52
1059 1060 0.778815 CGCGCGTTGCCATTTTTAAA 59.221 45.000 24.19 0.00 42.08 1.52
1060 1061 0.040336 TCGCGCGTTGCCATTTTTAA 60.040 45.000 30.98 1.54 42.08 1.52
1061 1062 0.169230 ATCGCGCGTTGCCATTTTTA 59.831 45.000 30.98 5.67 42.08 1.52
1062 1063 1.070471 GATCGCGCGTTGCCATTTTT 61.070 50.000 30.98 2.67 42.08 1.94
1063 1064 1.514014 GATCGCGCGTTGCCATTTT 60.514 52.632 30.98 4.28 42.08 1.82
1064 1065 2.100216 GATCGCGCGTTGCCATTT 59.900 55.556 30.98 5.38 42.08 2.32
1066 1067 3.864686 GTGATCGCGCGTTGCCAT 61.865 61.111 30.98 15.80 42.08 4.40
1087 1088 1.482593 AGTAGAAGCCAACATCCGGAG 59.517 52.381 11.34 4.72 0.00 4.63
1088 1089 1.480954 GAGTAGAAGCCAACATCCGGA 59.519 52.381 6.61 6.61 0.00 5.14
1089 1090 1.473434 GGAGTAGAAGCCAACATCCGG 60.473 57.143 0.00 0.00 0.00 5.14
1090 1091 1.473434 GGGAGTAGAAGCCAACATCCG 60.473 57.143 0.00 0.00 0.00 4.18
1091 1092 1.840635 AGGGAGTAGAAGCCAACATCC 59.159 52.381 0.00 0.00 0.00 3.51
1096 1097 0.252103 ACGGAGGGAGTAGAAGCCAA 60.252 55.000 0.00 0.00 0.00 4.52
1097 1098 0.252103 AACGGAGGGAGTAGAAGCCA 60.252 55.000 0.00 0.00 0.00 4.75
1098 1099 0.460722 GAACGGAGGGAGTAGAAGCC 59.539 60.000 0.00 0.00 0.00 4.35
1099 1100 0.100861 CGAACGGAGGGAGTAGAAGC 59.899 60.000 0.00 0.00 0.00 3.86
1100 1101 1.461559 ACGAACGGAGGGAGTAGAAG 58.538 55.000 0.00 0.00 0.00 2.85
1101 1102 2.787473 TACGAACGGAGGGAGTAGAA 57.213 50.000 0.00 0.00 0.00 2.10
1102 1103 2.787473 TTACGAACGGAGGGAGTAGA 57.213 50.000 0.00 0.00 0.00 2.59
1103 1104 2.751806 ACTTTACGAACGGAGGGAGTAG 59.248 50.000 0.00 0.00 0.00 2.57
1104 1105 2.795329 ACTTTACGAACGGAGGGAGTA 58.205 47.619 0.00 0.00 0.00 2.59
1105 1106 1.625511 ACTTTACGAACGGAGGGAGT 58.374 50.000 0.00 0.00 0.00 3.85
1107 1108 1.068333 CGAACTTTACGAACGGAGGGA 60.068 52.381 0.00 0.00 0.00 4.20
1108 1109 1.343506 CGAACTTTACGAACGGAGGG 58.656 55.000 0.00 0.00 0.00 4.30
1109 1110 1.336240 ACCGAACTTTACGAACGGAGG 60.336 52.381 0.00 0.00 45.31 4.30
1110 1111 1.981533 GACCGAACTTTACGAACGGAG 59.018 52.381 0.00 0.00 45.31 4.63
1113 1114 3.240069 AGATGACCGAACTTTACGAACG 58.760 45.455 0.00 0.00 0.00 3.95
1114 1115 6.882458 AATAGATGACCGAACTTTACGAAC 57.118 37.500 0.00 0.00 0.00 3.95
1115 1116 7.148540 CCAAAATAGATGACCGAACTTTACGAA 60.149 37.037 0.00 0.00 0.00 3.85
1118 1119 7.605410 TCCAAAATAGATGACCGAACTTTAC 57.395 36.000 0.00 0.00 0.00 2.01
1120 1121 6.715264 AGTTCCAAAATAGATGACCGAACTTT 59.285 34.615 0.00 0.00 36.24 2.66
1121 1122 6.149474 CAGTTCCAAAATAGATGACCGAACTT 59.851 38.462 0.00 0.00 37.25 2.66
1123 1124 5.642063 TCAGTTCCAAAATAGATGACCGAAC 59.358 40.000 0.00 0.00 0.00 3.95
1124 1125 5.800296 TCAGTTCCAAAATAGATGACCGAA 58.200 37.500 0.00 0.00 0.00 4.30
1125 1126 5.414789 TCAGTTCCAAAATAGATGACCGA 57.585 39.130 0.00 0.00 0.00 4.69
1126 1127 4.572389 CCTCAGTTCCAAAATAGATGACCG 59.428 45.833 0.00 0.00 0.00 4.79
1127 1128 5.745227 TCCTCAGTTCCAAAATAGATGACC 58.255 41.667 0.00 0.00 0.00 4.02
1129 1130 6.627087 ACTCCTCAGTTCCAAAATAGATGA 57.373 37.500 0.00 0.00 0.00 2.92
1130 1131 8.206867 TCATACTCCTCAGTTCCAAAATAGATG 58.793 37.037 0.00 0.00 33.62 2.90
1131 1132 8.324191 TCATACTCCTCAGTTCCAAAATAGAT 57.676 34.615 0.00 0.00 33.62 1.98
1132 1133 7.633772 GCTCATACTCCTCAGTTCCAAAATAGA 60.634 40.741 0.00 0.00 33.62 1.98
1133 1134 6.481644 GCTCATACTCCTCAGTTCCAAAATAG 59.518 42.308 0.00 0.00 33.62 1.73
1134 1135 6.349300 GCTCATACTCCTCAGTTCCAAAATA 58.651 40.000 0.00 0.00 33.62 1.40
1135 1136 5.189180 GCTCATACTCCTCAGTTCCAAAAT 58.811 41.667 0.00 0.00 33.62 1.82
1136 1137 4.579869 GCTCATACTCCTCAGTTCCAAAA 58.420 43.478 0.00 0.00 33.62 2.44
1137 1138 3.368427 CGCTCATACTCCTCAGTTCCAAA 60.368 47.826 0.00 0.00 33.62 3.28
1138 1139 2.166459 CGCTCATACTCCTCAGTTCCAA 59.834 50.000 0.00 0.00 33.62 3.53
1140 1141 1.751924 ACGCTCATACTCCTCAGTTCC 59.248 52.381 0.00 0.00 33.62 3.62
1141 1142 4.839668 ATACGCTCATACTCCTCAGTTC 57.160 45.455 0.00 0.00 33.62 3.01
1142 1143 6.902771 AATATACGCTCATACTCCTCAGTT 57.097 37.500 0.00 0.00 33.62 3.16
1143 1144 6.902771 AAATATACGCTCATACTCCTCAGT 57.097 37.500 0.00 0.00 36.55 3.41
1144 1145 9.862371 AAATAAATATACGCTCATACTCCTCAG 57.138 33.333 0.00 0.00 0.00 3.35
1149 1150 9.640963 AGGTGAAATAAATATACGCTCATACTC 57.359 33.333 0.00 0.00 0.00 2.59
1164 1165 4.285003 TCTCCTCGGTTCAGGTGAAATAAA 59.715 41.667 0.00 0.00 33.91 1.40
1165 1166 3.835978 TCTCCTCGGTTCAGGTGAAATAA 59.164 43.478 0.00 0.00 33.91 1.40
1170 1171 0.898789 GGTCTCCTCGGTTCAGGTGA 60.899 60.000 0.00 0.00 34.34 4.02
1180 1181 3.310774 TCGAGTTAAATACGGTCTCCTCG 59.689 47.826 0.00 0.00 41.25 4.63
1186 1190 7.043125 GGATAGGTTTTCGAGTTAAATACGGTC 60.043 40.741 0.00 0.00 0.00 4.79
1233 1237 1.338200 CGGTCAGACAAGAAAGGGAGG 60.338 57.143 2.17 0.00 0.00 4.30
1283 1287 1.520564 TTGCTATACGCGGTGCAGG 60.521 57.895 12.47 0.00 43.27 4.85
1302 1306 8.012151 TGTTGTTGTTCTTGTTGTAATTTGTG 57.988 30.769 0.00 0.00 0.00 3.33
1305 1309 7.411372 CGCTTGTTGTTGTTCTTGTTGTAATTT 60.411 33.333 0.00 0.00 0.00 1.82
1409 1439 4.445545 GAACTTGAAGCGCGGCGG 62.446 66.667 25.03 8.54 0.00 6.13
1413 1443 1.438710 CGGTTGAACTTGAAGCGCG 60.439 57.895 0.00 0.00 37.48 6.86
1414 1444 4.515107 CGGTTGAACTTGAAGCGC 57.485 55.556 0.00 0.00 37.48 5.92
1415 1445 0.238289 ATGCGGTTGAACTTGAAGCG 59.762 50.000 8.03 8.03 44.90 4.68
1416 1446 1.001378 ACATGCGGTTGAACTTGAAGC 60.001 47.619 0.00 0.00 0.00 3.86
1417 1447 3.354089 AACATGCGGTTGAACTTGAAG 57.646 42.857 0.00 0.00 38.60 3.02
1419 1449 2.034053 GGAAACATGCGGTTGAACTTGA 59.966 45.455 0.00 0.00 40.35 3.02
1420 1450 2.393764 GGAAACATGCGGTTGAACTTG 58.606 47.619 0.00 0.00 40.35 3.16
1422 1452 0.958822 GGGAAACATGCGGTTGAACT 59.041 50.000 0.00 0.00 40.35 3.01
1424 1454 0.820074 ACGGGAAACATGCGGTTGAA 60.820 50.000 0.00 0.00 40.35 2.69
1425 1455 1.228003 ACGGGAAACATGCGGTTGA 60.228 52.632 0.00 0.00 40.35 3.18
1426 1456 1.081509 CACGGGAAACATGCGGTTG 60.082 57.895 0.00 0.00 40.35 3.77
1428 1458 3.361977 GCACGGGAAACATGCGGT 61.362 61.111 0.00 0.00 34.77 5.68
1429 1459 3.326889 CTGCACGGGAAACATGCGG 62.327 63.158 0.00 0.00 44.52 5.69
1430 1460 2.176546 CTGCACGGGAAACATGCG 59.823 61.111 0.00 0.00 44.52 4.73
1431 1461 2.568090 CCTGCACGGGAAACATGC 59.432 61.111 0.00 0.00 42.58 4.06
1432 1462 2.568090 GCCTGCACGGGAAACATG 59.432 61.111 0.00 0.00 0.00 3.21
1455 1515 4.397832 GGTAGGCAAACGGCGGGA 62.398 66.667 13.24 0.00 46.16 5.14
1598 1983 2.488355 CGGGTAGTGCACGTCGAT 59.512 61.111 12.01 0.00 39.58 3.59
1688 2073 2.432628 CTTCAGGCCGTCCACGTC 60.433 66.667 0.00 0.00 37.74 4.34
1802 2187 0.896940 TAGTCGAGGGCCTTGTCGTT 60.897 55.000 20.33 9.12 37.46 3.85
2035 2422 4.485834 TAGTACTGCACGGCGCCG 62.486 66.667 44.88 44.88 46.03 6.46
2037 2424 2.884207 GGTAGTACTGCACGGCGC 60.884 66.667 13.26 0.00 42.89 6.53
2038 2425 1.226603 GAGGTAGTACTGCACGGCG 60.227 63.158 13.26 4.80 0.00 6.46
2039 2426 1.226603 CGAGGTAGTACTGCACGGC 60.227 63.158 13.26 0.00 0.00 5.68
2134 2529 2.976903 GGATGGATGCGCAGGCTC 60.977 66.667 18.32 8.82 40.82 4.70
2242 2638 2.283529 GCCTCGGAACCTCTCCACA 61.284 63.158 0.00 0.00 45.74 4.17
2305 2721 4.911610 CACATTCGAATTCTTGACCAACAC 59.088 41.667 8.21 0.00 0.00 3.32
2388 3453 7.296628 AGTGAGTAACAATCTTCTCAACTCT 57.703 36.000 0.00 0.00 38.40 3.24
2389 3454 8.082852 TGTAGTGAGTAACAATCTTCTCAACTC 58.917 37.037 0.00 0.00 38.40 3.01
2409 3959 7.544596 CGCTTGACGTATATAAAACTGTAGTG 58.455 38.462 0.00 0.00 36.87 2.74
2486 4081 4.847198 TGGACGGTCTGATTACTACTACA 58.153 43.478 8.23 0.00 0.00 2.74
2502 4097 4.450080 GTCACTAAAACCTTAACTGGACGG 59.550 45.833 0.00 0.00 0.00 4.79
2504 4099 5.291971 TCGTCACTAAAACCTTAACTGGAC 58.708 41.667 0.00 0.00 0.00 4.02
2511 4106 6.092955 ACATCACTCGTCACTAAAACCTTA 57.907 37.500 0.00 0.00 0.00 2.69
2612 4255 9.950680 AGACAGTTGACAAAAACATTACTTATG 57.049 29.630 0.00 0.00 40.26 1.90
2685 4334 6.785337 AAAATGCATCATTCAGATTCAGGA 57.215 33.333 0.00 0.00 33.41 3.86
2709 4360 2.115427 TCCGATGTTGGAGATGCCTAA 58.885 47.619 0.00 0.00 37.63 2.69
2711 4362 1.135094 ATCCGATGTTGGAGATGCCT 58.865 50.000 0.00 0.00 42.45 4.75
2776 4430 3.195698 GCGTTGGATGACCGGCTC 61.196 66.667 0.00 0.00 39.42 4.70
2777 4431 1.895020 TAAGCGTTGGATGACCGGCT 61.895 55.000 0.00 0.00 39.98 5.52
2778 4432 1.448893 TAAGCGTTGGATGACCGGC 60.449 57.895 0.00 0.00 39.42 6.13
2804 4458 8.407832 TGAATCTATTTGTATTACGGACGAAGA 58.592 33.333 0.00 0.00 0.00 2.87
2873 4549 7.019418 GGTTACAAATTAGTTTAGCTGAACGG 58.981 38.462 14.94 5.49 34.74 4.44
2874 4550 7.577979 TGGTTACAAATTAGTTTAGCTGAACG 58.422 34.615 14.94 3.36 34.74 3.95
2875 4551 9.177304 GTTGGTTACAAATTAGTTTAGCTGAAC 57.823 33.333 13.22 13.22 38.54 3.18
2876 4552 8.071368 CGTTGGTTACAAATTAGTTTAGCTGAA 58.929 33.333 0.00 0.00 38.54 3.02
2877 4553 7.441760 TCGTTGGTTACAAATTAGTTTAGCTGA 59.558 33.333 0.00 0.00 38.54 4.26
2879 4555 7.733402 TCGTTGGTTACAAATTAGTTTAGCT 57.267 32.000 0.00 0.00 38.54 3.32
2946 4660 4.664677 GCTGCCAGGTCGACGTGT 62.665 66.667 30.08 7.61 0.00 4.49
2992 4706 0.107945 GATGTGGAGAGCGGCTTCTT 60.108 55.000 2.97 0.00 0.00 2.52
3007 4721 0.385751 CGCACGACATAGGAGGATGT 59.614 55.000 0.00 0.00 42.82 3.06
3125 4843 1.016130 CACCACAGAGATGTCCACGC 61.016 60.000 0.00 0.00 0.00 5.34
3133 4851 3.340814 GTCAATGACCACCACAGAGAT 57.659 47.619 1.10 0.00 0.00 2.75
3150 4873 0.675837 CCTAGACTCGTGACCGGTCA 60.676 60.000 33.23 33.23 37.00 4.02
3162 4885 2.517402 CTCGCGGAGGCCTAGACT 60.517 66.667 4.42 0.00 35.02 3.24
3205 4928 1.291877 GCGCAGAAGGTGACGTTCAT 61.292 55.000 18.70 3.10 0.00 2.57
3214 4937 3.394836 GGGAGAGGCGCAGAAGGT 61.395 66.667 10.83 0.00 0.00 3.50
3236 4959 3.916544 CATCTAGGGAGGCGCGCA 61.917 66.667 34.42 10.12 0.00 6.09
3249 4972 2.890311 CTCGACATAGGAGAAGGCATCT 59.110 50.000 0.00 0.00 42.61 2.90
3282 5005 2.125310 CGGCGGCACACCTCATTA 60.125 61.111 10.53 0.00 0.00 1.90
3306 5030 1.478837 CCTCCACTACCTCGATGGCTA 60.479 57.143 0.00 0.00 40.22 3.93
3308 5032 0.755698 TCCTCCACTACCTCGATGGC 60.756 60.000 0.00 0.00 40.22 4.40
3312 5036 0.107800 CGTCTCCTCCACTACCTCGA 60.108 60.000 0.00 0.00 0.00 4.04
3314 5038 0.394625 AGCGTCTCCTCCACTACCTC 60.395 60.000 0.00 0.00 0.00 3.85
3338 5062 1.675641 ATGGCCGTGAAGGAGTTGC 60.676 57.895 0.00 0.00 45.00 4.17
3360 5092 1.666872 GTCGTGGCACGGCTAAAGT 60.667 57.895 34.78 0.00 43.82 2.66
3362 5094 2.735478 CGTCGTGGCACGGCTAAA 60.735 61.111 37.16 18.01 45.21 1.85
3396 5128 0.248743 TAATAGGACGCCGCGTGAAG 60.249 55.000 25.60 0.00 41.37 3.02
3401 5133 1.455786 CATTTCTAATAGGACGCCGCG 59.544 52.381 12.14 12.14 0.00 6.46
3405 5137 8.911247 ATTTTGAAACATTTCTAATAGGACGC 57.089 30.769 5.97 0.00 38.02 5.19
3406 5138 9.210426 CGATTTTGAAACATTTCTAATAGGACG 57.790 33.333 5.97 0.00 38.02 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.