Multiple sequence alignment - TraesCS3B01G443500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G443500 chr3B 100.000 4336 0 0 1 4336 684094589 684098924 0.000000e+00 8008.0
1 TraesCS3B01G443500 chr3B 96.431 2522 83 5 1766 4283 684041000 684043518 0.000000e+00 4152.0
2 TraesCS3B01G443500 chr3B 96.890 2251 62 7 1766 4012 683759351 683761597 0.000000e+00 3762.0
3 TraesCS3B01G443500 chr3B 91.483 951 54 13 771 1698 683758156 683759102 0.000000e+00 1282.0
4 TraesCS3B01G443500 chr3B 89.879 988 99 1 2463 3450 683680739 683681725 0.000000e+00 1269.0
5 TraesCS3B01G443500 chr3B 87.091 1100 142 0 2389 3488 659080823 659079724 0.000000e+00 1245.0
6 TraesCS3B01G443500 chr3B 88.994 954 79 18 771 1718 684039598 684040531 0.000000e+00 1157.0
7 TraesCS3B01G443500 chr3B 85.109 779 97 8 1777 2547 683679935 683680702 0.000000e+00 778.0
8 TraesCS3B01G443500 chr3B 84.729 609 76 11 1784 2379 684250144 684250748 1.040000e-165 593.0
9 TraesCS3B01G443500 chr3B 85.323 402 39 9 1032 1416 684265195 684265593 8.740000e-107 398.0
10 TraesCS3B01G443500 chr3B 89.935 308 27 3 1033 1338 684248692 684248997 1.130000e-105 394.0
11 TraesCS3B01G443500 chr3B 77.679 672 93 32 3296 3929 683762769 683763421 1.480000e-94 357.0
12 TraesCS3B01G443500 chr3B 82.946 258 25 13 3770 4016 684067949 684068198 9.440000e-52 215.0
13 TraesCS3B01G443500 chr3B 79.104 268 23 16 3781 4041 684084360 684084601 2.090000e-33 154.0
14 TraesCS3B01G443500 chr3B 84.314 102 13 1 971 1069 683678379 683678480 3.570000e-16 97.1
15 TraesCS3B01G443500 chr3D 94.334 2524 132 9 1766 4283 519353763 519356281 0.000000e+00 3858.0
16 TraesCS3B01G443500 chr3D 84.981 1325 162 19 2389 3685 498207262 498205947 0.000000e+00 1310.0
17 TraesCS3B01G443500 chr3D 88.623 1046 119 0 2405 3450 519335502 519336547 0.000000e+00 1273.0
18 TraesCS3B01G443500 chr3D 86.378 624 78 6 1914 2536 519334884 519335501 0.000000e+00 675.0
19 TraesCS3B01G443500 chr3D 87.601 371 42 2 972 1338 519333534 519333904 1.110000e-115 427.0
20 TraesCS3B01G443500 chr3D 88.889 342 23 5 811 1138 519343633 519343973 1.450000e-109 407.0
21 TraesCS3B01G443500 chr3D 82.366 448 23 17 1322 1752 519352915 519353323 5.370000e-89 339.0
22 TraesCS3B01G443500 chr3D 79.318 469 64 21 3770 4220 519380125 519380578 9.120000e-77 298.0
23 TraesCS3B01G443500 chr3D 82.869 251 30 9 3782 4030 519376362 519376601 3.400000e-51 213.0
24 TraesCS3B01G443500 chr3D 83.942 137 18 3 1777 1913 519334715 519334847 1.270000e-25 128.0
25 TraesCS3B01G443500 chr3A 93.994 1382 80 2 2564 3942 654389641 654391022 0.000000e+00 2089.0
26 TraesCS3B01G443500 chr3A 91.296 988 86 0 2463 3450 654359861 654360848 0.000000e+00 1349.0
27 TraesCS3B01G443500 chr3A 96.250 800 30 0 1766 2565 654383320 654384119 0.000000e+00 1312.0
28 TraesCS3B01G443500 chr3A 93.401 591 34 4 771 1358 654382346 654382934 0.000000e+00 870.0
29 TraesCS3B01G443500 chr3A 86.490 755 85 7 1792 2536 654359067 654359814 0.000000e+00 813.0
30 TraesCS3B01G443500 chr3A 84.262 610 82 10 1777 2376 654569072 654569677 2.250000e-162 582.0
31 TraesCS3B01G443500 chr3A 86.162 383 47 5 960 1338 654357643 654358023 4.040000e-110 409.0
32 TraesCS3B01G443500 chr3A 89.644 309 28 3 1032 1338 654782077 654782383 1.460000e-104 390.0
33 TraesCS3B01G443500 chr3A 88.274 307 36 0 1032 1338 655083161 655083467 6.850000e-98 368.0
34 TraesCS3B01G443500 chr1B 96.581 468 11 3 313 775 238211688 238212155 0.000000e+00 771.0
35 TraesCS3B01G443500 chr1B 97.161 317 9 0 1 317 605017165 605017481 1.770000e-148 536.0
36 TraesCS3B01G443500 chr1B 96.226 318 11 1 1 317 522761487 522761804 1.790000e-143 520.0
37 TraesCS3B01G443500 chr1B 92.476 319 16 5 1 318 451557613 451557924 2.380000e-122 449.0
38 TraesCS3B01G443500 chr4B 96.552 464 11 3 313 771 317841536 317841999 0.000000e+00 763.0
39 TraesCS3B01G443500 chr4B 96.544 463 11 3 313 770 335514215 335513753 0.000000e+00 761.0
40 TraesCS3B01G443500 chr4B 96.544 463 10 4 313 770 345354357 345354818 0.000000e+00 761.0
41 TraesCS3B01G443500 chr4B 95.772 473 15 3 313 780 489110742 489110270 0.000000e+00 758.0
42 TraesCS3B01G443500 chr4B 96.328 463 12 3 313 770 310546708 310546246 0.000000e+00 756.0
43 TraesCS3B01G443500 chr4B 96.328 463 12 3 313 770 319936892 319937354 0.000000e+00 756.0
44 TraesCS3B01G443500 chr4B 99.054 317 3 0 1 317 73920508 73920192 1.750000e-158 569.0
45 TraesCS3B01G443500 chr4B 94.044 319 17 2 1 318 535289562 535289245 2.340000e-132 483.0
46 TraesCS3B01G443500 chr5B 96.328 463 12 3 313 770 225411005 225411467 0.000000e+00 756.0
47 TraesCS3B01G443500 chr5B 87.421 318 39 1 1 317 230885225 230885542 8.860000e-97 364.0
48 TraesCS3B01G443500 chr7B 95.000 480 16 6 313 784 283454388 283453909 0.000000e+00 747.0
49 TraesCS3B01G443500 chrUn 90.683 322 25 2 1 317 88158645 88158966 1.440000e-114 424.0
50 TraesCS3B01G443500 chr2B 88.498 313 34 2 1 312 157785062 157785373 1.140000e-100 377.0
51 TraesCS3B01G443500 chr7A 87.461 319 37 3 1 317 730506979 730507296 8.860000e-97 364.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G443500 chr3B 684094589 684098924 4335 False 8008.000000 8008 100.000000 1 4336 1 chr3B.!!$F3 4335
1 TraesCS3B01G443500 chr3B 684039598 684043518 3920 False 2654.500000 4152 92.712500 771 4283 2 chr3B.!!$F7 3512
2 TraesCS3B01G443500 chr3B 683758156 683763421 5265 False 1800.333333 3762 88.684000 771 4012 3 chr3B.!!$F6 3241
3 TraesCS3B01G443500 chr3B 659079724 659080823 1099 True 1245.000000 1245 87.091000 2389 3488 1 chr3B.!!$R1 1099
4 TraesCS3B01G443500 chr3B 683678379 683681725 3346 False 714.700000 1269 86.434000 971 3450 3 chr3B.!!$F5 2479
5 TraesCS3B01G443500 chr3B 684248692 684250748 2056 False 493.500000 593 87.332000 1033 2379 2 chr3B.!!$F8 1346
6 TraesCS3B01G443500 chr3D 519352915 519356281 3366 False 2098.500000 3858 88.350000 1322 4283 2 chr3D.!!$F3 2961
7 TraesCS3B01G443500 chr3D 498205947 498207262 1315 True 1310.000000 1310 84.981000 2389 3685 1 chr3D.!!$R1 1296
8 TraesCS3B01G443500 chr3D 519333534 519336547 3013 False 625.750000 1273 86.636000 972 3450 4 chr3D.!!$F2 2478
9 TraesCS3B01G443500 chr3D 519376362 519380578 4216 False 255.500000 298 81.093500 3770 4220 2 chr3D.!!$F4 450
10 TraesCS3B01G443500 chr3A 654389641 654391022 1381 False 2089.000000 2089 93.994000 2564 3942 1 chr3A.!!$F1 1378
11 TraesCS3B01G443500 chr3A 654382346 654384119 1773 False 1091.000000 1312 94.825500 771 2565 2 chr3A.!!$F6 1794
12 TraesCS3B01G443500 chr3A 654357643 654360848 3205 False 857.000000 1349 87.982667 960 3450 3 chr3A.!!$F5 2490
13 TraesCS3B01G443500 chr3A 654569072 654569677 605 False 582.000000 582 84.262000 1777 2376 1 chr3A.!!$F2 599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 152 0.173708 CGAGGTGAGCTGGTAGGAAC 59.826 60.000 0.00 0.00 0.00 3.62 F
317 318 0.179081 GCGTCACATAGGAGTTCCCC 60.179 60.000 0.00 0.00 36.42 4.81 F
1023 1041 0.243907 CTTCTTCCTCCTCGTTCGCA 59.756 55.000 0.00 0.00 0.00 5.10 F
1721 2252 0.095245 CGCATGCTCCGTACACTTTG 59.905 55.000 17.13 0.00 0.00 2.77 F
1753 2284 1.544093 CCTTCAGGTTCTCTGCAGCAA 60.544 52.381 9.47 0.77 43.06 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1005 1017 0.895530 ATGCGAACGAGGAGGAAGAA 59.104 50.000 0.00 0.0 0.00 2.52 R
1627 2152 1.068055 GTCACTGCCCTTGCTGAAATG 60.068 52.381 0.00 0.0 39.51 2.32 R
2888 4403 0.247460 TGAGAGACTTGATGGCACCG 59.753 55.000 0.00 0.0 0.00 4.94 R
2934 4449 2.440409 GGCTGCATCTCTTTTTCCTCA 58.560 47.619 0.50 0.0 0.00 3.86 R
3361 4884 2.927553 AGCGAAATGATTCTGCAACC 57.072 45.000 4.73 0.0 37.46 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.230743 AGTGTTTGTGTTTGCCAGAAC 57.769 42.857 0.00 0.00 0.00 3.01
21 22 2.560542 AGTGTTTGTGTTTGCCAGAACA 59.439 40.909 0.00 0.00 37.20 3.18
22 23 3.195396 AGTGTTTGTGTTTGCCAGAACAT 59.805 39.130 1.51 0.00 41.18 2.71
23 24 3.932089 GTGTTTGTGTTTGCCAGAACATT 59.068 39.130 1.51 0.00 41.18 2.71
24 25 4.032786 GTGTTTGTGTTTGCCAGAACATTC 59.967 41.667 1.51 0.00 41.18 2.67
25 26 3.451141 TTGTGTTTGCCAGAACATTCC 57.549 42.857 1.51 0.00 41.18 3.01
26 27 2.382882 TGTGTTTGCCAGAACATTCCA 58.617 42.857 1.51 0.00 41.18 3.53
27 28 2.964464 TGTGTTTGCCAGAACATTCCAT 59.036 40.909 1.51 0.00 41.18 3.41
28 29 3.387374 TGTGTTTGCCAGAACATTCCATT 59.613 39.130 1.51 0.00 41.18 3.16
31 32 5.296531 GTGTTTGCCAGAACATTCCATTTTT 59.703 36.000 1.51 0.00 41.18 1.94
78 79 9.439537 GAAATTTCTAAAGTAATTCGGATCTGC 57.560 33.333 11.05 0.00 0.00 4.26
79 80 8.506168 AATTTCTAAAGTAATTCGGATCTGCA 57.494 30.769 0.00 0.00 0.00 4.41
80 81 7.915293 TTTCTAAAGTAATTCGGATCTGCAA 57.085 32.000 0.00 0.00 0.00 4.08
81 82 7.915293 TTCTAAAGTAATTCGGATCTGCAAA 57.085 32.000 0.00 0.00 0.00 3.68
83 84 4.622701 AAGTAATTCGGATCTGCAAAGC 57.377 40.909 0.00 0.00 0.00 3.51
84 85 2.609459 AGTAATTCGGATCTGCAAAGCG 59.391 45.455 0.00 0.00 0.00 4.68
85 86 1.453155 AATTCGGATCTGCAAAGCGT 58.547 45.000 0.00 0.00 0.00 5.07
86 87 0.729116 ATTCGGATCTGCAAAGCGTG 59.271 50.000 0.00 0.00 0.00 5.34
87 88 0.602638 TTCGGATCTGCAAAGCGTGT 60.603 50.000 0.00 0.00 0.00 4.49
88 89 1.014044 TCGGATCTGCAAAGCGTGTC 61.014 55.000 0.00 0.00 0.00 3.67
90 91 1.735700 CGGATCTGCAAAGCGTGTCTA 60.736 52.381 0.00 0.00 0.00 2.59
91 92 1.929836 GGATCTGCAAAGCGTGTCTAG 59.070 52.381 0.00 0.00 0.00 2.43
92 93 2.611518 GATCTGCAAAGCGTGTCTAGT 58.388 47.619 0.00 0.00 0.00 2.57
93 94 2.526304 TCTGCAAAGCGTGTCTAGTT 57.474 45.000 0.00 0.00 0.00 2.24
94 95 2.404215 TCTGCAAAGCGTGTCTAGTTC 58.596 47.619 0.00 0.00 0.00 3.01
97 98 3.202906 TGCAAAGCGTGTCTAGTTCTTT 58.797 40.909 0.00 0.00 0.00 2.52
99 100 4.994852 TGCAAAGCGTGTCTAGTTCTTTAT 59.005 37.500 0.00 0.00 0.00 1.40
100 101 5.107104 TGCAAAGCGTGTCTAGTTCTTTATG 60.107 40.000 0.00 0.00 0.00 1.90
101 102 5.107065 GCAAAGCGTGTCTAGTTCTTTATGT 60.107 40.000 0.00 0.00 0.00 2.29
102 103 6.565999 GCAAAGCGTGTCTAGTTCTTTATGTT 60.566 38.462 0.00 0.00 0.00 2.71
104 105 6.467723 AGCGTGTCTAGTTCTTTATGTTTG 57.532 37.500 0.00 0.00 0.00 2.93
105 106 6.220930 AGCGTGTCTAGTTCTTTATGTTTGA 58.779 36.000 0.00 0.00 0.00 2.69
106 107 6.874134 AGCGTGTCTAGTTCTTTATGTTTGAT 59.126 34.615 0.00 0.00 0.00 2.57
107 108 6.955963 GCGTGTCTAGTTCTTTATGTTTGATG 59.044 38.462 0.00 0.00 0.00 3.07
108 109 6.955963 CGTGTCTAGTTCTTTATGTTTGATGC 59.044 38.462 0.00 0.00 0.00 3.91
109 110 7.148573 CGTGTCTAGTTCTTTATGTTTGATGCT 60.149 37.037 0.00 0.00 0.00 3.79
110 111 9.151471 GTGTCTAGTTCTTTATGTTTGATGCTA 57.849 33.333 0.00 0.00 0.00 3.49
113 114 9.944376 TCTAGTTCTTTATGTTTGATGCTAAGT 57.056 29.630 0.00 0.00 0.00 2.24
120 121 9.443283 CTTTATGTTTGATGCTAAGTTATGAGC 57.557 33.333 0.00 0.00 39.25 4.26
128 129 5.257082 TGCTAAGTTATGAGCACATACGA 57.743 39.130 3.09 0.00 43.64 3.43
129 130 5.281727 TGCTAAGTTATGAGCACATACGAG 58.718 41.667 3.09 0.99 43.64 4.18
130 131 5.163550 TGCTAAGTTATGAGCACATACGAGT 60.164 40.000 3.09 0.00 43.64 4.18
131 132 5.174035 GCTAAGTTATGAGCACATACGAGTG 59.826 44.000 3.09 0.00 38.50 3.51
138 139 2.653742 CACATACGAGTGCGAGGTG 58.346 57.895 0.00 0.00 41.64 4.00
140 141 0.452184 ACATACGAGTGCGAGGTGAG 59.548 55.000 0.00 0.00 41.64 3.51
141 142 0.867753 CATACGAGTGCGAGGTGAGC 60.868 60.000 0.00 0.00 41.64 4.26
142 143 1.032657 ATACGAGTGCGAGGTGAGCT 61.033 55.000 0.00 0.00 41.64 4.09
143 144 1.923227 TACGAGTGCGAGGTGAGCTG 61.923 60.000 0.00 0.00 41.64 4.24
145 146 2.919856 AGTGCGAGGTGAGCTGGT 60.920 61.111 0.00 0.00 35.28 4.00
147 148 1.153745 GTGCGAGGTGAGCTGGTAG 60.154 63.158 0.00 0.00 35.28 3.18
148 149 2.351244 TGCGAGGTGAGCTGGTAGG 61.351 63.158 0.00 0.00 35.28 3.18
149 150 2.052690 GCGAGGTGAGCTGGTAGGA 61.053 63.158 0.00 0.00 0.00 2.94
150 151 1.605058 GCGAGGTGAGCTGGTAGGAA 61.605 60.000 0.00 0.00 0.00 3.36
151 152 0.173708 CGAGGTGAGCTGGTAGGAAC 59.826 60.000 0.00 0.00 0.00 3.62
152 153 1.267121 GAGGTGAGCTGGTAGGAACA 58.733 55.000 0.00 0.00 0.00 3.18
153 154 0.977395 AGGTGAGCTGGTAGGAACAC 59.023 55.000 0.00 0.00 0.00 3.32
154 155 0.685097 GGTGAGCTGGTAGGAACACA 59.315 55.000 0.00 0.00 0.00 3.72
155 156 1.279271 GGTGAGCTGGTAGGAACACAT 59.721 52.381 0.00 0.00 0.00 3.21
156 157 2.622436 GTGAGCTGGTAGGAACACATC 58.378 52.381 0.00 0.00 0.00 3.06
158 159 2.840038 TGAGCTGGTAGGAACACATCAT 59.160 45.455 0.00 0.00 0.00 2.45
159 160 3.118629 TGAGCTGGTAGGAACACATCATC 60.119 47.826 0.00 0.00 0.00 2.92
160 161 3.110705 AGCTGGTAGGAACACATCATCT 58.889 45.455 0.00 0.00 0.00 2.90
163 164 4.342378 GCTGGTAGGAACACATCATCTAGA 59.658 45.833 0.00 0.00 0.00 2.43
166 167 6.377080 TGGTAGGAACACATCATCTAGATCT 58.623 40.000 1.03 0.00 33.72 2.75
167 168 6.491745 TGGTAGGAACACATCATCTAGATCTC 59.508 42.308 1.03 0.00 33.72 2.75
170 171 5.473162 AGGAACACATCATCTAGATCTCTCG 59.527 44.000 1.03 0.00 33.72 4.04
171 172 5.471797 GGAACACATCATCTAGATCTCTCGA 59.528 44.000 1.03 0.00 33.72 4.04
173 174 6.741992 ACACATCATCTAGATCTCTCGATC 57.258 41.667 1.03 0.00 45.18 3.69
174 175 5.647658 ACACATCATCTAGATCTCTCGATCC 59.352 44.000 1.03 0.00 45.83 3.36
175 176 5.882000 CACATCATCTAGATCTCTCGATCCT 59.118 44.000 1.03 0.00 45.83 3.24
176 177 5.882000 ACATCATCTAGATCTCTCGATCCTG 59.118 44.000 1.03 3.16 45.83 3.86
178 179 5.244755 TCATCTAGATCTCTCGATCCTGTG 58.755 45.833 1.03 0.00 45.83 3.66
179 180 4.698201 TCTAGATCTCTCGATCCTGTGT 57.302 45.455 0.00 0.00 45.83 3.72
180 181 5.042463 TCTAGATCTCTCGATCCTGTGTT 57.958 43.478 0.00 0.00 45.83 3.32
181 182 5.060506 TCTAGATCTCTCGATCCTGTGTTC 58.939 45.833 0.00 0.00 45.83 3.18
182 183 3.625853 AGATCTCTCGATCCTGTGTTCA 58.374 45.455 0.00 0.00 45.83 3.18
183 184 4.019858 AGATCTCTCGATCCTGTGTTCAA 58.980 43.478 0.00 0.00 45.83 2.69
185 186 4.808414 TCTCTCGATCCTGTGTTCAAAT 57.192 40.909 0.00 0.00 0.00 2.32
187 188 3.861840 TCTCGATCCTGTGTTCAAATCC 58.138 45.455 0.00 0.00 0.00 3.01
188 189 2.939103 CTCGATCCTGTGTTCAAATCCC 59.061 50.000 0.00 0.00 0.00 3.85
189 190 2.017049 CGATCCTGTGTTCAAATCCCC 58.983 52.381 0.00 0.00 0.00 4.81
190 191 2.017049 GATCCTGTGTTCAAATCCCCG 58.983 52.381 0.00 0.00 0.00 5.73
192 193 1.979308 TCCTGTGTTCAAATCCCCGTA 59.021 47.619 0.00 0.00 0.00 4.02
194 195 2.943033 CCTGTGTTCAAATCCCCGTATC 59.057 50.000 0.00 0.00 0.00 2.24
195 196 3.605634 CTGTGTTCAAATCCCCGTATCA 58.394 45.455 0.00 0.00 0.00 2.15
196 197 3.340034 TGTGTTCAAATCCCCGTATCAC 58.660 45.455 0.00 0.00 0.00 3.06
198 199 3.374058 GTGTTCAAATCCCCGTATCACAG 59.626 47.826 0.00 0.00 0.00 3.66
199 200 3.008594 TGTTCAAATCCCCGTATCACAGT 59.991 43.478 0.00 0.00 0.00 3.55
200 201 4.223255 TGTTCAAATCCCCGTATCACAGTA 59.777 41.667 0.00 0.00 0.00 2.74
201 202 5.104693 TGTTCAAATCCCCGTATCACAGTAT 60.105 40.000 0.00 0.00 0.00 2.12
202 203 5.623956 TCAAATCCCCGTATCACAGTATT 57.376 39.130 0.00 0.00 0.00 1.89
203 204 5.996644 TCAAATCCCCGTATCACAGTATTT 58.003 37.500 0.00 0.00 0.00 1.40
204 205 6.419791 TCAAATCCCCGTATCACAGTATTTT 58.580 36.000 0.00 0.00 0.00 1.82
205 206 6.887545 TCAAATCCCCGTATCACAGTATTTTT 59.112 34.615 0.00 0.00 0.00 1.94
224 225 3.829886 TTTGAGCAATGGTCGTTCATC 57.170 42.857 7.98 0.00 32.15 2.92
226 227 3.057969 TGAGCAATGGTCGTTCATCTT 57.942 42.857 7.98 0.00 32.15 2.40
227 228 2.743664 TGAGCAATGGTCGTTCATCTTG 59.256 45.455 7.98 0.00 32.15 3.02
228 229 3.002791 GAGCAATGGTCGTTCATCTTGA 58.997 45.455 0.00 0.00 0.00 3.02
229 230 3.614092 AGCAATGGTCGTTCATCTTGAT 58.386 40.909 0.00 0.00 0.00 2.57
230 231 3.624861 AGCAATGGTCGTTCATCTTGATC 59.375 43.478 0.00 0.00 0.00 2.92
234 235 2.230266 TGGTCGTTCATCTTGATCGTCA 59.770 45.455 7.58 5.70 39.71 4.35
235 236 3.119137 TGGTCGTTCATCTTGATCGTCAT 60.119 43.478 7.58 0.00 39.71 3.06
237 238 4.355437 GTCGTTCATCTTGATCGTCATCT 58.645 43.478 7.58 0.00 39.71 2.90
238 239 4.800993 GTCGTTCATCTTGATCGTCATCTT 59.199 41.667 7.58 0.00 39.71 2.40
239 240 5.037385 TCGTTCATCTTGATCGTCATCTTC 58.963 41.667 7.58 0.00 39.71 2.87
240 241 4.800471 CGTTCATCTTGATCGTCATCTTCA 59.200 41.667 0.95 0.00 35.53 3.02
242 243 6.561717 CGTTCATCTTGATCGTCATCTTCATG 60.562 42.308 0.00 0.00 35.53 3.07
244 245 4.063998 TCTTGATCGTCATCTTCATGGG 57.936 45.455 0.00 0.00 0.00 4.00
245 246 2.245159 TGATCGTCATCTTCATGGGC 57.755 50.000 0.00 0.00 0.00 5.36
246 247 1.202687 TGATCGTCATCTTCATGGGCC 60.203 52.381 0.00 0.00 0.00 5.80
247 248 0.250038 ATCGTCATCTTCATGGGCCG 60.250 55.000 0.00 0.00 0.00 6.13
248 249 1.889105 CGTCATCTTCATGGGCCGG 60.889 63.158 0.00 0.00 0.00 6.13
249 250 2.189499 GTCATCTTCATGGGCCGGC 61.189 63.158 21.18 21.18 0.00 6.13
250 251 2.908940 CATCTTCATGGGCCGGCC 60.909 66.667 38.57 38.57 0.00 6.13
289 290 2.606961 CGAAGCCGCAGCAACTTGA 61.607 57.895 1.66 0.00 43.56 3.02
291 292 2.770587 GAAGCCGCAGCAACTTGACG 62.771 60.000 1.66 0.00 43.56 4.35
293 294 3.648982 CCGCAGCAACTTGACGCA 61.649 61.111 0.00 0.00 0.00 5.24
294 295 2.127496 CGCAGCAACTTGACGCAG 60.127 61.111 0.00 0.00 0.00 5.18
296 297 1.206072 GCAGCAACTTGACGCAGAG 59.794 57.895 0.00 0.00 0.00 3.35
297 298 1.224069 GCAGCAACTTGACGCAGAGA 61.224 55.000 0.00 0.00 0.00 3.10
298 299 0.788995 CAGCAACTTGACGCAGAGAG 59.211 55.000 0.00 0.00 0.00 3.20
299 300 0.948141 AGCAACTTGACGCAGAGAGC 60.948 55.000 0.00 0.00 40.87 4.09
309 310 3.264666 GCAGAGAGCGTCACATAGG 57.735 57.895 0.00 0.00 0.00 2.57
310 311 0.741326 GCAGAGAGCGTCACATAGGA 59.259 55.000 0.00 0.00 0.00 2.94
311 312 1.268999 GCAGAGAGCGTCACATAGGAG 60.269 57.143 0.00 0.00 0.00 3.69
312 313 2.020720 CAGAGAGCGTCACATAGGAGT 58.979 52.381 0.00 0.00 0.00 3.85
313 314 2.425312 CAGAGAGCGTCACATAGGAGTT 59.575 50.000 0.00 0.00 0.00 3.01
314 315 2.685897 AGAGAGCGTCACATAGGAGTTC 59.314 50.000 0.00 0.00 0.00 3.01
315 316 1.751924 AGAGCGTCACATAGGAGTTCC 59.248 52.381 0.00 0.00 0.00 3.62
317 318 0.179081 GCGTCACATAGGAGTTCCCC 60.179 60.000 0.00 0.00 36.42 4.81
318 319 0.464452 CGTCACATAGGAGTTCCCCC 59.536 60.000 0.00 0.00 36.42 5.40
319 320 1.580059 GTCACATAGGAGTTCCCCCA 58.420 55.000 0.00 0.00 36.42 4.96
322 323 1.846439 CACATAGGAGTTCCCCCACAT 59.154 52.381 0.00 0.00 36.42 3.21
324 325 3.046374 ACATAGGAGTTCCCCCACATAC 58.954 50.000 0.00 0.00 36.42 2.39
325 326 1.784358 TAGGAGTTCCCCCACATACG 58.216 55.000 0.00 0.00 36.42 3.06
326 327 0.981277 AGGAGTTCCCCCACATACGG 60.981 60.000 0.00 0.00 36.42 4.02
327 328 0.979187 GGAGTTCCCCCACATACGGA 60.979 60.000 0.00 0.00 0.00 4.69
329 330 0.252558 AGTTCCCCCACATACGGACT 60.253 55.000 0.00 0.00 0.00 3.85
332 333 2.236893 GTTCCCCCACATACGGACTTTA 59.763 50.000 0.00 0.00 0.00 1.85
333 334 2.549082 TCCCCCACATACGGACTTTAA 58.451 47.619 0.00 0.00 0.00 1.52
334 335 2.911636 TCCCCCACATACGGACTTTAAA 59.088 45.455 0.00 0.00 0.00 1.52
335 336 3.330110 TCCCCCACATACGGACTTTAAAA 59.670 43.478 0.00 0.00 0.00 1.52
336 337 4.080687 CCCCCACATACGGACTTTAAAAA 58.919 43.478 0.00 0.00 0.00 1.94
338 339 5.887035 CCCCCACATACGGACTTTAAAAATA 59.113 40.000 0.00 0.00 0.00 1.40
339 340 6.038936 CCCCCACATACGGACTTTAAAAATAG 59.961 42.308 0.00 0.00 0.00 1.73
341 342 6.459161 CCCACATACGGACTTTAAAAATAGCC 60.459 42.308 0.00 0.00 0.00 3.93
343 344 7.496591 CCACATACGGACTTTAAAAATAGCCTA 59.503 37.037 0.00 0.00 0.00 3.93
344 345 9.052759 CACATACGGACTTTAAAAATAGCCTAT 57.947 33.333 0.00 0.00 0.00 2.57
371 372 9.403583 ACTAATGTATTTCGAAATTACATGGGT 57.596 29.630 27.10 24.37 32.42 4.51
372 373 9.878599 CTAATGTATTTCGAAATTACATGGGTC 57.121 33.333 27.10 8.55 32.42 4.46
374 375 7.315247 TGTATTTCGAAATTACATGGGTCTG 57.685 36.000 27.10 0.00 0.00 3.51
375 376 5.835113 ATTTCGAAATTACATGGGTCTGG 57.165 39.130 17.60 0.00 0.00 3.86
376 377 3.992943 TCGAAATTACATGGGTCTGGT 57.007 42.857 0.00 0.00 0.00 4.00
377 378 3.869065 TCGAAATTACATGGGTCTGGTC 58.131 45.455 0.00 0.00 0.00 4.02
378 379 2.943033 CGAAATTACATGGGTCTGGTCC 59.057 50.000 0.00 0.00 0.00 4.46
379 380 3.621214 CGAAATTACATGGGTCTGGTCCA 60.621 47.826 0.00 0.00 38.82 4.02
381 382 4.608170 AATTACATGGGTCTGGTCCAAT 57.392 40.909 0.00 0.00 37.87 3.16
384 385 5.522315 TTACATGGGTCTGGTCCAATAAA 57.478 39.130 0.00 0.00 37.87 1.40
387 388 4.772100 ACATGGGTCTGGTCCAATAAAAAG 59.228 41.667 0.00 0.00 37.87 2.27
388 389 3.773560 TGGGTCTGGTCCAATAAAAAGG 58.226 45.455 0.00 0.00 0.00 3.11
389 390 3.141272 TGGGTCTGGTCCAATAAAAAGGT 59.859 43.478 0.00 0.00 0.00 3.50
390 391 3.509967 GGGTCTGGTCCAATAAAAAGGTG 59.490 47.826 0.00 0.00 0.00 4.00
391 392 4.403734 GGTCTGGTCCAATAAAAAGGTGA 58.596 43.478 0.00 0.00 0.00 4.02
392 393 4.217767 GGTCTGGTCCAATAAAAAGGTGAC 59.782 45.833 0.00 0.00 0.00 3.67
393 394 4.069304 TCTGGTCCAATAAAAAGGTGACG 58.931 43.478 0.00 0.00 0.00 4.35
394 395 2.554893 TGGTCCAATAAAAAGGTGACGC 59.445 45.455 0.00 0.00 0.00 5.19
398 399 3.632604 TCCAATAAAAAGGTGACGCAACA 59.367 39.130 0.00 0.00 0.00 3.33
399 400 3.733727 CCAATAAAAAGGTGACGCAACAC 59.266 43.478 2.22 2.22 39.70 3.32
409 410 4.710528 GTGACGCAACACCTATAATAGC 57.289 45.455 0.00 0.00 35.07 2.97
410 411 3.493503 GTGACGCAACACCTATAATAGCC 59.506 47.826 0.00 0.00 35.07 3.93
411 412 3.386726 TGACGCAACACCTATAATAGCCT 59.613 43.478 0.00 0.00 0.00 4.58
412 413 3.988517 GACGCAACACCTATAATAGCCTC 59.011 47.826 0.00 0.00 0.00 4.70
413 414 3.641906 ACGCAACACCTATAATAGCCTCT 59.358 43.478 0.00 0.00 0.00 3.69
414 415 3.990469 CGCAACACCTATAATAGCCTCTG 59.010 47.826 0.00 0.00 0.00 3.35
415 416 4.319177 GCAACACCTATAATAGCCTCTGG 58.681 47.826 0.00 0.00 0.00 3.86
416 417 4.040461 GCAACACCTATAATAGCCTCTGGA 59.960 45.833 0.00 0.00 0.00 3.86
417 418 5.542779 CAACACCTATAATAGCCTCTGGAC 58.457 45.833 0.00 0.00 0.00 4.02
418 419 3.827302 ACACCTATAATAGCCTCTGGACG 59.173 47.826 0.00 0.00 0.00 4.79
420 421 4.523173 CACCTATAATAGCCTCTGGACGAA 59.477 45.833 0.00 0.00 0.00 3.85
425 426 8.311836 CCTATAATAGCCTCTGGACGAAATTTA 58.688 37.037 0.00 0.00 0.00 1.40
426 427 9.877178 CTATAATAGCCTCTGGACGAAATTTAT 57.123 33.333 0.00 0.00 0.00 1.40
427 428 6.867662 AATAGCCTCTGGACGAAATTTATG 57.132 37.500 0.00 0.00 0.00 1.90
429 430 4.843728 AGCCTCTGGACGAAATTTATGAA 58.156 39.130 0.00 0.00 0.00 2.57
430 431 4.878397 AGCCTCTGGACGAAATTTATGAAG 59.122 41.667 0.00 0.00 0.00 3.02
431 432 4.636206 GCCTCTGGACGAAATTTATGAAGT 59.364 41.667 0.00 0.00 0.00 3.01
432 433 5.447818 GCCTCTGGACGAAATTTATGAAGTG 60.448 44.000 0.00 0.00 0.00 3.16
434 435 4.394920 TCTGGACGAAATTTATGAAGTGGC 59.605 41.667 0.00 0.00 0.00 5.01
437 438 5.163663 TGGACGAAATTTATGAAGTGGCATC 60.164 40.000 0.00 0.00 0.00 3.91
440 441 6.324819 ACGAAATTTATGAAGTGGCATCTTG 58.675 36.000 6.99 0.00 0.00 3.02
442 443 7.120579 ACGAAATTTATGAAGTGGCATCTTGTA 59.879 33.333 6.99 0.00 0.00 2.41
449 450 6.603237 TGAAGTGGCATCTTGTATATTTCG 57.397 37.500 6.99 0.00 0.00 3.46
450 451 6.112734 TGAAGTGGCATCTTGTATATTTCGT 58.887 36.000 6.99 0.00 0.00 3.85
451 452 6.257849 TGAAGTGGCATCTTGTATATTTCGTC 59.742 38.462 6.99 0.00 0.00 4.20
452 453 5.057149 AGTGGCATCTTGTATATTTCGTCC 58.943 41.667 0.00 0.00 0.00 4.79
454 455 5.295787 GTGGCATCTTGTATATTTCGTCCAA 59.704 40.000 0.00 0.00 0.00 3.53
455 456 5.527214 TGGCATCTTGTATATTTCGTCCAAG 59.473 40.000 0.00 0.00 35.09 3.61
456 457 5.049405 GGCATCTTGTATATTTCGTCCAAGG 60.049 44.000 0.00 0.00 34.65 3.61
457 458 5.560953 GCATCTTGTATATTTCGTCCAAGGC 60.561 44.000 0.00 0.00 34.65 4.35
458 459 5.353394 TCTTGTATATTTCGTCCAAGGCT 57.647 39.130 0.00 0.00 34.65 4.58
459 460 5.741011 TCTTGTATATTTCGTCCAAGGCTT 58.259 37.500 0.00 0.00 34.65 4.35
460 461 5.815740 TCTTGTATATTTCGTCCAAGGCTTC 59.184 40.000 0.00 0.00 34.65 3.86
461 462 5.092554 TGTATATTTCGTCCAAGGCTTCA 57.907 39.130 0.00 0.00 0.00 3.02
463 464 5.527214 TGTATATTTCGTCCAAGGCTTCATG 59.473 40.000 0.00 0.00 0.00 3.07
466 467 0.955428 TCGTCCAAGGCTTCATGCAC 60.955 55.000 0.00 0.00 45.15 4.57
467 468 0.957395 CGTCCAAGGCTTCATGCACT 60.957 55.000 0.00 0.00 45.15 4.40
468 469 0.807496 GTCCAAGGCTTCATGCACTC 59.193 55.000 0.00 0.00 45.15 3.51
472 473 2.076100 CAAGGCTTCATGCACTCGTTA 58.924 47.619 0.00 0.00 45.15 3.18
474 475 2.283298 AGGCTTCATGCACTCGTTATG 58.717 47.619 0.00 0.00 45.15 1.90
475 476 1.331756 GGCTTCATGCACTCGTTATGG 59.668 52.381 0.00 0.00 45.15 2.74
478 479 2.022764 TCATGCACTCGTTATGGTGG 57.977 50.000 0.00 0.00 34.41 4.61
479 480 0.378257 CATGCACTCGTTATGGTGGC 59.622 55.000 0.00 0.00 34.41 5.01
482 483 0.727398 GCACTCGTTATGGTGGCTTC 59.273 55.000 0.00 0.00 34.41 3.86
485 486 2.811431 CACTCGTTATGGTGGCTTCAAA 59.189 45.455 0.00 0.00 0.00 2.69
486 487 3.074412 ACTCGTTATGGTGGCTTCAAAG 58.926 45.455 0.00 0.00 0.00 2.77
488 489 3.071479 TCGTTATGGTGGCTTCAAAGAC 58.929 45.455 0.00 0.00 33.51 3.01
490 491 3.421844 GTTATGGTGGCTTCAAAGACCT 58.578 45.455 0.00 0.00 31.13 3.85
491 492 1.915141 ATGGTGGCTTCAAAGACCTG 58.085 50.000 0.00 0.00 31.13 4.00
495 496 2.893489 GGTGGCTTCAAAGACCTGAAAT 59.107 45.455 0.00 0.00 34.96 2.17
496 497 3.057245 GGTGGCTTCAAAGACCTGAAATC 60.057 47.826 0.00 0.00 34.96 2.17
498 499 4.219288 GTGGCTTCAAAGACCTGAAATCAT 59.781 41.667 0.00 0.00 34.96 2.45
499 500 4.460382 TGGCTTCAAAGACCTGAAATCATC 59.540 41.667 0.00 0.00 34.96 2.92
501 502 5.397326 GCTTCAAAGACCTGAAATCATCAC 58.603 41.667 0.00 0.00 34.96 3.06
502 503 5.182760 GCTTCAAAGACCTGAAATCATCACT 59.817 40.000 0.00 0.00 34.96 3.41
503 504 6.622462 GCTTCAAAGACCTGAAATCATCACTC 60.622 42.308 0.00 0.00 34.96 3.51
504 505 4.931601 TCAAAGACCTGAAATCATCACTCG 59.068 41.667 0.00 0.00 33.47 4.18
506 507 5.661056 AAGACCTGAAATCATCACTCGTA 57.339 39.130 0.00 0.00 33.47 3.43
508 509 5.411781 AGACCTGAAATCATCACTCGTAAC 58.588 41.667 0.00 0.00 33.47 2.50
509 510 5.186021 AGACCTGAAATCATCACTCGTAACT 59.814 40.000 0.00 0.00 33.47 2.24
510 511 5.411781 ACCTGAAATCATCACTCGTAACTC 58.588 41.667 0.00 0.00 33.47 3.01
511 512 4.806247 CCTGAAATCATCACTCGTAACTCC 59.194 45.833 0.00 0.00 33.47 3.85
512 513 4.421058 TGAAATCATCACTCGTAACTCCG 58.579 43.478 0.00 0.00 31.50 4.63
514 515 4.451629 AATCATCACTCGTAACTCCGTT 57.548 40.909 0.00 0.00 0.00 4.44
515 516 3.482722 TCATCACTCGTAACTCCGTTC 57.517 47.619 0.00 0.00 0.00 3.95
516 517 3.079578 TCATCACTCGTAACTCCGTTCT 58.920 45.455 0.00 0.00 0.00 3.01
518 519 3.278367 TCACTCGTAACTCCGTTCTTG 57.722 47.619 0.00 0.00 0.00 3.02
519 520 2.620115 TCACTCGTAACTCCGTTCTTGT 59.380 45.455 0.00 0.00 0.00 3.16
520 521 3.067180 TCACTCGTAACTCCGTTCTTGTT 59.933 43.478 0.00 0.00 0.00 2.83
521 522 3.424529 CACTCGTAACTCCGTTCTTGTTC 59.575 47.826 0.00 0.00 0.00 3.18
522 523 2.985139 CTCGTAACTCCGTTCTTGTTCC 59.015 50.000 0.00 0.00 0.00 3.62
523 524 2.064014 CGTAACTCCGTTCTTGTTCCC 58.936 52.381 0.00 0.00 0.00 3.97
524 525 2.420642 GTAACTCCGTTCTTGTTCCCC 58.579 52.381 0.00 0.00 0.00 4.81
525 526 1.137697 AACTCCGTTCTTGTTCCCCT 58.862 50.000 0.00 0.00 0.00 4.79
527 528 1.202770 ACTCCGTTCTTGTTCCCCTTG 60.203 52.381 0.00 0.00 0.00 3.61
528 529 0.536460 TCCGTTCTTGTTCCCCTTGC 60.536 55.000 0.00 0.00 0.00 4.01
529 530 1.574428 CGTTCTTGTTCCCCTTGCG 59.426 57.895 0.00 0.00 0.00 4.85
530 531 1.285950 GTTCTTGTTCCCCTTGCGC 59.714 57.895 0.00 0.00 0.00 6.09
531 532 1.152860 TTCTTGTTCCCCTTGCGCA 60.153 52.632 5.66 5.66 0.00 6.09
532 533 0.539438 TTCTTGTTCCCCTTGCGCAT 60.539 50.000 12.75 0.00 0.00 4.73
534 535 2.824071 CTTGTTCCCCTTGCGCATGC 62.824 60.000 12.75 7.91 43.20 4.06
535 536 4.133796 GTTCCCCTTGCGCATGCC 62.134 66.667 12.75 5.63 41.78 4.40
536 537 4.675161 TTCCCCTTGCGCATGCCA 62.675 61.111 12.75 8.49 41.78 4.92
540 541 2.495409 CCCTTGCGCATGCCATCAT 61.495 57.895 12.75 0.00 41.78 2.45
541 542 1.007734 CCTTGCGCATGCCATCATC 60.008 57.895 12.75 0.00 41.78 2.92
542 543 1.452953 CCTTGCGCATGCCATCATCT 61.453 55.000 12.75 0.00 41.78 2.90
544 545 1.449726 TTGCGCATGCCATCATCTCC 61.450 55.000 12.75 0.00 41.78 3.71
546 547 1.241990 GCGCATGCCATCATCTCCAT 61.242 55.000 13.15 0.00 33.98 3.41
547 548 0.521735 CGCATGCCATCATCTCCATG 59.478 55.000 13.15 0.00 38.41 3.66
550 551 2.364324 GCATGCCATCATCTCCATGTTT 59.636 45.455 6.36 0.00 37.84 2.83
551 552 3.181469 GCATGCCATCATCTCCATGTTTT 60.181 43.478 6.36 0.00 37.84 2.43
552 553 4.682320 GCATGCCATCATCTCCATGTTTTT 60.682 41.667 6.36 0.00 37.84 1.94
572 573 4.789012 TTTCTTGCTCCAATGTTCATCC 57.211 40.909 0.00 0.00 0.00 3.51
573 574 3.726557 TCTTGCTCCAATGTTCATCCT 57.273 42.857 0.00 0.00 0.00 3.24
574 575 4.038271 TCTTGCTCCAATGTTCATCCTT 57.962 40.909 0.00 0.00 0.00 3.36
575 576 4.012374 TCTTGCTCCAATGTTCATCCTTC 58.988 43.478 0.00 0.00 0.00 3.46
576 577 3.726557 TGCTCCAATGTTCATCCTTCT 57.273 42.857 0.00 0.00 0.00 2.85
577 578 3.614092 TGCTCCAATGTTCATCCTTCTC 58.386 45.455 0.00 0.00 0.00 2.87
578 579 2.948315 GCTCCAATGTTCATCCTTCTCC 59.052 50.000 0.00 0.00 0.00 3.71
581 582 4.592942 TCCAATGTTCATCCTTCTCCAAG 58.407 43.478 0.00 0.00 0.00 3.61
582 583 4.043310 TCCAATGTTCATCCTTCTCCAAGT 59.957 41.667 0.00 0.00 0.00 3.16
584 585 5.945784 CCAATGTTCATCCTTCTCCAAGTTA 59.054 40.000 0.00 0.00 0.00 2.24
585 586 6.094603 CCAATGTTCATCCTTCTCCAAGTTAG 59.905 42.308 0.00 0.00 0.00 2.34
586 587 5.165961 TGTTCATCCTTCTCCAAGTTAGG 57.834 43.478 0.00 0.00 0.00 2.69
587 588 3.914426 TCATCCTTCTCCAAGTTAGGC 57.086 47.619 0.00 0.00 0.00 3.93
591 592 1.636003 CCTTCTCCAAGTTAGGCCCTT 59.364 52.381 0.00 0.00 0.00 3.95
592 593 2.356227 CCTTCTCCAAGTTAGGCCCTTC 60.356 54.545 0.00 0.00 0.00 3.46
593 594 2.038863 TCTCCAAGTTAGGCCCTTCA 57.961 50.000 0.00 0.00 0.00 3.02
594 595 2.562296 TCTCCAAGTTAGGCCCTTCAT 58.438 47.619 0.00 0.00 0.00 2.57
596 597 3.333680 TCTCCAAGTTAGGCCCTTCATTT 59.666 43.478 0.00 0.00 0.00 2.32
598 599 3.165071 CCAAGTTAGGCCCTTCATTTGT 58.835 45.455 0.00 0.00 0.00 2.83
599 600 4.043561 TCCAAGTTAGGCCCTTCATTTGTA 59.956 41.667 0.00 0.00 0.00 2.41
600 601 4.770010 CCAAGTTAGGCCCTTCATTTGTAA 59.230 41.667 0.00 0.00 0.00 2.41
602 603 4.017126 AGTTAGGCCCTTCATTTGTAAGC 58.983 43.478 0.00 0.00 0.00 3.09
604 605 2.888212 AGGCCCTTCATTTGTAAGCAA 58.112 42.857 0.00 0.00 0.00 3.91
606 607 3.645687 AGGCCCTTCATTTGTAAGCAAAA 59.354 39.130 0.00 0.00 46.23 2.44
607 608 3.745975 GGCCCTTCATTTGTAAGCAAAAC 59.254 43.478 0.00 0.00 46.23 2.43
608 609 4.376146 GCCCTTCATTTGTAAGCAAAACA 58.624 39.130 0.00 0.00 46.23 2.83
609 610 4.813697 GCCCTTCATTTGTAAGCAAAACAA 59.186 37.500 0.00 0.00 46.23 2.83
620 621 9.553064 TTTGTAAGCAAAACAAATGTATCCAAT 57.447 25.926 7.05 0.00 40.83 3.16
621 622 9.553064 TTGTAAGCAAAACAAATGTATCCAATT 57.447 25.926 0.00 0.00 34.04 2.32
622 623 9.553064 TGTAAGCAAAACAAATGTATCCAATTT 57.447 25.926 0.00 0.00 0.00 1.82
626 627 7.334171 AGCAAAACAAATGTATCCAATTTAGGC 59.666 33.333 0.00 0.00 0.00 3.93
627 628 7.118971 GCAAAACAAATGTATCCAATTTAGGCA 59.881 33.333 0.00 0.00 0.00 4.75
628 629 8.658609 CAAAACAAATGTATCCAATTTAGGCAG 58.341 33.333 0.00 0.00 0.00 4.85
629 630 5.906073 ACAAATGTATCCAATTTAGGCAGC 58.094 37.500 0.00 0.00 0.00 5.25
630 631 5.421693 ACAAATGTATCCAATTTAGGCAGCA 59.578 36.000 0.00 0.00 0.00 4.41
631 632 6.098695 ACAAATGTATCCAATTTAGGCAGCAT 59.901 34.615 0.00 0.00 0.00 3.79
632 633 5.972107 ATGTATCCAATTTAGGCAGCATC 57.028 39.130 0.00 0.00 0.00 3.91
633 634 4.790937 TGTATCCAATTTAGGCAGCATCA 58.209 39.130 0.00 0.00 0.00 3.07
635 636 6.541907 TGTATCCAATTTAGGCAGCATCATA 58.458 36.000 0.00 0.00 0.00 2.15
636 637 7.177184 TGTATCCAATTTAGGCAGCATCATAT 58.823 34.615 0.00 0.00 0.00 1.78
638 639 6.579666 TCCAATTTAGGCAGCATCATATTC 57.420 37.500 0.00 0.00 0.00 1.75
639 640 6.309357 TCCAATTTAGGCAGCATCATATTCT 58.691 36.000 0.00 0.00 0.00 2.40
640 641 6.432162 TCCAATTTAGGCAGCATCATATTCTC 59.568 38.462 0.00 0.00 0.00 2.87
642 643 7.093902 CCAATTTAGGCAGCATCATATTCTCAT 60.094 37.037 0.00 0.00 0.00 2.90
643 644 6.812879 TTTAGGCAGCATCATATTCTCATG 57.187 37.500 0.00 0.00 0.00 3.07
644 645 4.635699 AGGCAGCATCATATTCTCATGA 57.364 40.909 0.00 0.00 39.20 3.07
645 646 4.981812 AGGCAGCATCATATTCTCATGAA 58.018 39.130 0.00 0.00 38.39 2.57
646 647 4.760715 AGGCAGCATCATATTCTCATGAAC 59.239 41.667 0.00 0.00 38.39 3.18
647 648 4.517832 GGCAGCATCATATTCTCATGAACA 59.482 41.667 0.00 0.00 38.39 3.18
648 649 5.183331 GGCAGCATCATATTCTCATGAACAT 59.817 40.000 0.00 0.00 38.39 2.71
649 650 6.294564 GGCAGCATCATATTCTCATGAACATT 60.295 38.462 0.00 0.00 38.39 2.71
652 653 9.216117 CAGCATCATATTCTCATGAACATTAGA 57.784 33.333 0.00 0.00 38.39 2.10
653 654 9.788889 AGCATCATATTCTCATGAACATTAGAA 57.211 29.630 11.93 11.93 38.39 2.10
691 692 7.662604 ACGAAAGTACCTGGTAATTTAGTTG 57.337 36.000 27.96 20.67 46.88 3.16
693 694 6.652062 CGAAAGTACCTGGTAATTTAGTTGGT 59.348 38.462 26.60 8.28 36.63 3.67
694 695 7.360607 CGAAAGTACCTGGTAATTTAGTTGGTG 60.361 40.741 26.60 10.93 36.63 4.17
695 696 5.250982 AGTACCTGGTAATTTAGTTGGTGC 58.749 41.667 8.40 0.00 0.00 5.01
697 698 3.078837 CCTGGTAATTTAGTTGGTGCGT 58.921 45.455 0.00 0.00 0.00 5.24
700 701 3.749088 TGGTAATTTAGTTGGTGCGTGAG 59.251 43.478 0.00 0.00 0.00 3.51
719 720 6.787225 CGTGAGCTCTAGTAATTAGTTCAGT 58.213 40.000 16.19 0.00 0.00 3.41
722 723 9.672086 GTGAGCTCTAGTAATTAGTTCAGTATG 57.328 37.037 16.19 0.00 37.54 2.39
723 724 9.409918 TGAGCTCTAGTAATTAGTTCAGTATGT 57.590 33.333 16.19 0.00 37.40 2.29
732 733 9.692749 GTAATTAGTTCAGTATGTATAGCAGCA 57.307 33.333 0.00 0.00 37.40 4.41
733 734 8.824159 AATTAGTTCAGTATGTATAGCAGCAG 57.176 34.615 0.00 0.00 37.40 4.24
735 736 4.039730 AGTTCAGTATGTATAGCAGCAGGG 59.960 45.833 0.00 0.00 37.40 4.45
736 737 2.899900 TCAGTATGTATAGCAGCAGGGG 59.100 50.000 0.00 0.00 37.40 4.79
737 738 1.625818 AGTATGTATAGCAGCAGGGGC 59.374 52.381 0.00 0.00 41.61 5.80
747 748 3.668386 GCAGGGGCTGTGTGTAAC 58.332 61.111 0.00 0.00 36.96 2.50
749 750 0.821711 GCAGGGGCTGTGTGTAACAA 60.822 55.000 0.00 0.00 43.44 2.83
751 752 4.282313 GCAGGGGCTGTGTGTAACAATG 62.282 54.545 0.00 0.00 43.44 2.82
766 767 6.597672 GTGTAACAATGGTATTGATGTCCTCA 59.402 38.462 8.41 0.00 36.32 3.86
767 768 7.283127 GTGTAACAATGGTATTGATGTCCTCAT 59.717 37.037 8.41 0.00 36.32 2.90
792 793 3.446516 GTGACGGGGACTGATACTAGTTT 59.553 47.826 0.00 0.00 38.67 2.66
793 794 4.641989 GTGACGGGGACTGATACTAGTTTA 59.358 45.833 0.00 0.00 38.67 2.01
801 805 7.201839 GGGGACTGATACTAGTTTACTTCTCAG 60.202 44.444 0.00 5.50 35.99 3.35
1022 1040 0.458716 CCTTCTTCCTCCTCGTTCGC 60.459 60.000 0.00 0.00 0.00 4.70
1023 1041 0.243907 CTTCTTCCTCCTCGTTCGCA 59.756 55.000 0.00 0.00 0.00 5.10
1089 1402 1.554160 GCGATCTCATCCATCCTCCAT 59.446 52.381 0.00 0.00 0.00 3.41
1427 1766 7.521423 CGTTATGTTTCTGTTCCAATTCCTTGA 60.521 37.037 0.00 0.00 34.04 3.02
1428 1767 6.923199 ATGTTTCTGTTCCAATTCCTTGAT 57.077 33.333 0.00 0.00 34.04 2.57
1429 1768 6.729690 TGTTTCTGTTCCAATTCCTTGATT 57.270 33.333 0.00 0.00 34.04 2.57
1431 1770 6.985645 TGTTTCTGTTCCAATTCCTTGATTTG 59.014 34.615 0.00 0.00 34.04 2.32
1435 1791 7.563906 TCTGTTCCAATTCCTTGATTTGTTTT 58.436 30.769 0.00 0.00 34.04 2.43
1557 2078 1.305201 ACAAAGACCACGAACGCAAT 58.695 45.000 0.00 0.00 0.00 3.56
1649 2174 0.535780 TTCAGCAAGGGCAGTGACTG 60.536 55.000 8.52 8.52 44.61 3.51
1718 2249 1.014044 CAACGCATGCTCCGTACACT 61.014 55.000 17.13 0.00 38.06 3.55
1719 2250 0.320421 AACGCATGCTCCGTACACTT 60.320 50.000 17.13 0.00 38.06 3.16
1720 2251 0.320421 ACGCATGCTCCGTACACTTT 60.320 50.000 17.13 0.00 37.12 2.66
1721 2252 0.095245 CGCATGCTCCGTACACTTTG 59.905 55.000 17.13 0.00 0.00 2.77
1723 2254 2.343101 GCATGCTCCGTACACTTTGTA 58.657 47.619 11.37 0.00 0.00 2.41
1724 2255 2.739913 GCATGCTCCGTACACTTTGTAA 59.260 45.455 11.37 0.00 34.21 2.41
1727 2258 4.062677 TGCTCCGTACACTTTGTAAACT 57.937 40.909 0.00 0.00 34.21 2.66
1753 2284 1.544093 CCTTCAGGTTCTCTGCAGCAA 60.544 52.381 9.47 0.77 43.06 3.91
1955 3211 5.933617 AGATCCAAGTGCTATATTTGCAGA 58.066 37.500 3.73 0.00 41.41 4.26
2508 4022 3.641906 GGATTCTCGGGGTGATCTTTCTA 59.358 47.826 0.00 0.00 0.00 2.10
2681 4196 2.484264 GGTTGGTCTTCTTCATTCACCG 59.516 50.000 0.00 0.00 0.00 4.94
2732 4247 2.121948 TCCCTCCTCAATCTGTCCATG 58.878 52.381 0.00 0.00 0.00 3.66
2888 4403 2.558359 CAAAGTGAGGGTTGGACAATCC 59.442 50.000 6.22 6.22 41.93 3.01
2934 4449 3.622060 CTGCGAAATGGGACCCCGT 62.622 63.158 8.45 0.32 39.42 5.28
3232 4747 3.803231 CAGCTATGCAAAAACAGCAACAA 59.197 39.130 0.00 0.00 46.27 2.83
3361 4884 9.683069 ACAAAATTTACAGCTAGAAGAAATGTG 57.317 29.630 0.00 0.00 0.00 3.21
3455 4978 0.966920 GACGTGGGAACTCAGGAAGA 59.033 55.000 0.00 0.00 0.00 2.87
3882 5428 5.741982 GGTGGATTTTGTAATGCGTTCATAC 59.258 40.000 0.00 0.00 35.07 2.39
3898 5444 4.981806 TCATACTTAGCAAATTGGCACC 57.018 40.909 7.75 0.00 35.83 5.01
4046 5710 5.595952 TCGCTGGTATATATCATCTGATGCT 59.404 40.000 12.78 6.00 36.05 3.79
4068 5733 0.317160 AGACAGACCGAACGATGCAA 59.683 50.000 0.00 0.00 0.00 4.08
4107 5786 0.254178 CAAGAGTGATGGACCCAGGG 59.746 60.000 2.85 2.85 0.00 4.45
4203 5885 6.203808 GGGAAAATGTACAGTTTACCATCC 57.796 41.667 34.50 23.91 45.90 3.51
4240 5922 7.202526 ACAAATTCGGAGCAATATGGTTTATG 58.797 34.615 0.00 0.00 0.00 1.90
4258 5941 9.019656 TGGTTTATGTTAGCACATGTATTTTCT 57.980 29.630 0.00 0.00 43.92 2.52
4279 5962 6.463995 TCTACAAAGCACTTGGAAAACATT 57.536 33.333 3.89 0.00 39.56 2.71
4283 5966 5.581874 ACAAAGCACTTGGAAAACATTGAAG 59.418 36.000 3.89 0.00 39.56 3.02
4285 5968 3.960102 AGCACTTGGAAAACATTGAAGGA 59.040 39.130 0.00 0.00 0.00 3.36
4286 5969 4.038402 AGCACTTGGAAAACATTGAAGGAG 59.962 41.667 0.00 0.00 0.00 3.69
4287 5970 4.037923 GCACTTGGAAAACATTGAAGGAGA 59.962 41.667 0.00 0.00 0.00 3.71
4288 5971 5.279156 GCACTTGGAAAACATTGAAGGAGAT 60.279 40.000 0.00 0.00 0.00 2.75
4295 5978 6.127786 GGAAAACATTGAAGGAGATCAGGAAG 60.128 42.308 0.00 0.00 0.00 3.46
4301 5984 4.629122 TGAAGGAGATCAGGAAGGAAGAT 58.371 43.478 0.00 0.00 0.00 2.40
4302 5985 5.781827 TGAAGGAGATCAGGAAGGAAGATA 58.218 41.667 0.00 0.00 0.00 1.98
4303 5986 6.205298 TGAAGGAGATCAGGAAGGAAGATAA 58.795 40.000 0.00 0.00 0.00 1.75
4309 5992 7.443879 GGAGATCAGGAAGGAAGATAAATCAAC 59.556 40.741 0.00 0.00 0.00 3.18
4314 5997 7.607991 TCAGGAAGGAAGATAAATCAACAACTC 59.392 37.037 0.00 0.00 0.00 3.01
4316 5999 7.609532 AGGAAGGAAGATAAATCAACAACTCAG 59.390 37.037 0.00 0.00 0.00 3.35
4318 6001 7.913674 AGGAAGATAAATCAACAACTCAGTC 57.086 36.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.560542 TGTTCTGGCAAACACAAACACT 59.439 40.909 9.98 0.00 34.31 3.55
1 2 2.953020 TGTTCTGGCAAACACAAACAC 58.047 42.857 9.98 0.00 34.31 3.32
2 3 3.883830 ATGTTCTGGCAAACACAAACA 57.116 38.095 14.44 7.28 41.65 2.83
3 4 3.555547 GGAATGTTCTGGCAAACACAAAC 59.444 43.478 14.44 8.38 41.65 2.93
5 6 2.762887 TGGAATGTTCTGGCAAACACAA 59.237 40.909 14.44 0.00 41.65 3.33
6 7 2.382882 TGGAATGTTCTGGCAAACACA 58.617 42.857 14.44 6.48 41.65 3.72
7 8 3.665745 ATGGAATGTTCTGGCAAACAC 57.334 42.857 14.44 6.19 41.65 3.32
52 53 9.439537 GCAGATCCGAATTACTTTAGAAATTTC 57.560 33.333 10.33 10.33 0.00 2.17
53 54 8.956426 TGCAGATCCGAATTACTTTAGAAATTT 58.044 29.630 0.00 0.00 0.00 1.82
54 55 8.506168 TGCAGATCCGAATTACTTTAGAAATT 57.494 30.769 0.00 0.00 0.00 1.82
55 56 8.506168 TTGCAGATCCGAATTACTTTAGAAAT 57.494 30.769 0.00 0.00 0.00 2.17
56 57 7.915293 TTGCAGATCCGAATTACTTTAGAAA 57.085 32.000 0.00 0.00 0.00 2.52
57 58 7.414098 GCTTTGCAGATCCGAATTACTTTAGAA 60.414 37.037 0.00 0.00 0.00 2.10
58 59 6.037172 GCTTTGCAGATCCGAATTACTTTAGA 59.963 38.462 0.00 0.00 0.00 2.10
60 61 5.220586 CGCTTTGCAGATCCGAATTACTTTA 60.221 40.000 0.00 0.00 0.00 1.85
62 63 3.063997 CGCTTTGCAGATCCGAATTACTT 59.936 43.478 0.00 0.00 0.00 2.24
63 64 2.609459 CGCTTTGCAGATCCGAATTACT 59.391 45.455 0.00 0.00 0.00 2.24
64 65 2.351726 ACGCTTTGCAGATCCGAATTAC 59.648 45.455 4.78 0.00 0.00 1.89
66 67 1.131126 CACGCTTTGCAGATCCGAATT 59.869 47.619 4.78 0.00 0.00 2.17
67 68 0.729116 CACGCTTTGCAGATCCGAAT 59.271 50.000 4.78 0.00 0.00 3.34
68 69 0.602638 ACACGCTTTGCAGATCCGAA 60.603 50.000 4.78 0.00 0.00 4.30
69 70 1.005037 ACACGCTTTGCAGATCCGA 60.005 52.632 4.78 0.00 0.00 4.55
70 71 1.016130 AGACACGCTTTGCAGATCCG 61.016 55.000 0.00 0.00 0.00 4.18
72 73 2.611518 ACTAGACACGCTTTGCAGATC 58.388 47.619 0.00 0.00 0.00 2.75
73 74 2.751166 ACTAGACACGCTTTGCAGAT 57.249 45.000 0.00 0.00 0.00 2.90
74 75 2.035961 AGAACTAGACACGCTTTGCAGA 59.964 45.455 0.00 0.00 0.00 4.26
75 76 2.408050 AGAACTAGACACGCTTTGCAG 58.592 47.619 0.00 0.00 0.00 4.41
77 78 3.879932 AAAGAACTAGACACGCTTTGC 57.120 42.857 0.00 0.00 0.00 3.68
78 79 6.467723 ACATAAAGAACTAGACACGCTTTG 57.532 37.500 0.00 0.00 31.85 2.77
79 80 7.225931 TCAAACATAAAGAACTAGACACGCTTT 59.774 33.333 0.00 0.00 33.76 3.51
80 81 6.704493 TCAAACATAAAGAACTAGACACGCTT 59.296 34.615 0.00 0.00 0.00 4.68
81 82 6.220930 TCAAACATAAAGAACTAGACACGCT 58.779 36.000 0.00 0.00 0.00 5.07
83 84 6.955963 GCATCAAACATAAAGAACTAGACACG 59.044 38.462 0.00 0.00 0.00 4.49
84 85 8.034058 AGCATCAAACATAAAGAACTAGACAC 57.966 34.615 0.00 0.00 0.00 3.67
85 86 9.719355 TTAGCATCAAACATAAAGAACTAGACA 57.281 29.630 0.00 0.00 0.00 3.41
87 88 9.944376 ACTTAGCATCAAACATAAAGAACTAGA 57.056 29.630 0.00 0.00 0.00 2.43
94 95 9.443283 GCTCATAACTTAGCATCAAACATAAAG 57.557 33.333 0.00 0.00 38.63 1.85
106 107 5.163550 ACTCGTATGTGCTCATAACTTAGCA 60.164 40.000 9.93 0.00 46.11 3.49
107 108 5.174035 CACTCGTATGTGCTCATAACTTAGC 59.826 44.000 9.93 0.00 38.13 3.09
108 109 6.739900 CACTCGTATGTGCTCATAACTTAG 57.260 41.667 9.93 7.82 38.13 2.18
120 121 0.170339 TCACCTCGCACTCGTATGTG 59.830 55.000 0.00 0.00 40.62 3.21
121 122 0.452184 CTCACCTCGCACTCGTATGT 59.548 55.000 0.00 0.00 36.96 2.29
124 125 1.674651 AGCTCACCTCGCACTCGTA 60.675 57.895 0.00 0.00 36.96 3.43
125 126 2.986413 AGCTCACCTCGCACTCGT 60.986 61.111 0.00 0.00 36.96 4.18
126 127 2.505777 CAGCTCACCTCGCACTCG 60.506 66.667 0.00 0.00 0.00 4.18
127 128 1.595993 TACCAGCTCACCTCGCACTC 61.596 60.000 0.00 0.00 0.00 3.51
128 129 1.599606 CTACCAGCTCACCTCGCACT 61.600 60.000 0.00 0.00 0.00 4.40
129 130 1.153745 CTACCAGCTCACCTCGCAC 60.154 63.158 0.00 0.00 0.00 5.34
130 131 2.351244 CCTACCAGCTCACCTCGCA 61.351 63.158 0.00 0.00 0.00 5.10
131 132 1.605058 TTCCTACCAGCTCACCTCGC 61.605 60.000 0.00 0.00 0.00 5.03
132 133 0.173708 GTTCCTACCAGCTCACCTCG 59.826 60.000 0.00 0.00 0.00 4.63
133 134 1.066787 GTGTTCCTACCAGCTCACCTC 60.067 57.143 0.00 0.00 0.00 3.85
134 135 0.977395 GTGTTCCTACCAGCTCACCT 59.023 55.000 0.00 0.00 0.00 4.00
135 136 0.685097 TGTGTTCCTACCAGCTCACC 59.315 55.000 0.00 0.00 0.00 4.02
136 137 2.028112 TGATGTGTTCCTACCAGCTCAC 60.028 50.000 0.00 0.00 0.00 3.51
137 138 2.256306 TGATGTGTTCCTACCAGCTCA 58.744 47.619 0.00 0.00 0.00 4.26
138 139 3.133721 AGATGATGTGTTCCTACCAGCTC 59.866 47.826 0.00 0.00 0.00 4.09
140 141 3.550437 AGATGATGTGTTCCTACCAGC 57.450 47.619 0.00 0.00 0.00 4.85
141 142 6.493115 AGATCTAGATGATGTGTTCCTACCAG 59.507 42.308 10.74 0.00 35.14 4.00
142 143 6.377080 AGATCTAGATGATGTGTTCCTACCA 58.623 40.000 10.74 0.00 35.14 3.25
143 144 6.719370 AGAGATCTAGATGATGTGTTCCTACC 59.281 42.308 10.74 0.00 35.14 3.18
145 146 6.652900 CGAGAGATCTAGATGATGTGTTCCTA 59.347 42.308 10.74 0.00 35.14 2.94
147 148 5.471797 TCGAGAGATCTAGATGATGTGTTCC 59.528 44.000 10.74 0.00 35.14 3.62
148 149 6.552859 TCGAGAGATCTAGATGATGTGTTC 57.447 41.667 10.74 0.00 35.14 3.18
166 167 3.369471 GGGATTTGAACACAGGATCGAGA 60.369 47.826 0.00 0.00 0.00 4.04
167 168 2.939103 GGGATTTGAACACAGGATCGAG 59.061 50.000 0.00 0.00 0.00 4.04
170 171 2.017049 CGGGGATTTGAACACAGGATC 58.983 52.381 0.00 0.00 0.00 3.36
171 172 1.354368 ACGGGGATTTGAACACAGGAT 59.646 47.619 0.00 0.00 0.00 3.24
173 174 2.483014 TACGGGGATTTGAACACAGG 57.517 50.000 0.00 0.00 0.00 4.00
174 175 3.374058 GTGATACGGGGATTTGAACACAG 59.626 47.826 0.00 0.00 0.00 3.66
175 176 3.244596 TGTGATACGGGGATTTGAACACA 60.245 43.478 0.00 0.00 34.24 3.72
176 177 3.340034 TGTGATACGGGGATTTGAACAC 58.660 45.455 0.00 0.00 0.00 3.32
178 179 3.606687 ACTGTGATACGGGGATTTGAAC 58.393 45.455 0.00 0.00 0.00 3.18
179 180 3.992943 ACTGTGATACGGGGATTTGAA 57.007 42.857 0.00 0.00 0.00 2.69
180 181 5.623956 AATACTGTGATACGGGGATTTGA 57.376 39.130 0.00 0.00 0.00 2.69
181 182 6.693315 AAAATACTGTGATACGGGGATTTG 57.307 37.500 0.00 0.00 29.92 2.32
202 203 4.278170 AGATGAACGACCATTGCTCAAAAA 59.722 37.500 0.00 0.00 0.00 1.94
203 204 3.820467 AGATGAACGACCATTGCTCAAAA 59.180 39.130 0.00 0.00 0.00 2.44
204 205 3.411446 AGATGAACGACCATTGCTCAAA 58.589 40.909 0.00 0.00 0.00 2.69
205 206 3.057969 AGATGAACGACCATTGCTCAA 57.942 42.857 0.00 0.00 0.00 3.02
207 208 3.002791 TCAAGATGAACGACCATTGCTC 58.997 45.455 0.00 0.00 0.00 4.26
209 210 3.544834 CGATCAAGATGAACGACCATTGC 60.545 47.826 4.27 0.00 43.94 3.56
210 211 3.618594 ACGATCAAGATGAACGACCATTG 59.381 43.478 15.39 0.00 43.94 2.82
212 213 3.119137 TGACGATCAAGATGAACGACCAT 60.119 43.478 15.39 0.00 43.94 3.55
213 214 2.230266 TGACGATCAAGATGAACGACCA 59.770 45.455 15.39 10.10 43.94 4.02
214 215 2.876091 TGACGATCAAGATGAACGACC 58.124 47.619 15.39 8.09 43.94 4.79
218 219 6.292757 CCATGAAGATGACGATCAAGATGAAC 60.293 42.308 0.00 0.00 0.00 3.18
219 220 5.756833 CCATGAAGATGACGATCAAGATGAA 59.243 40.000 0.00 0.00 0.00 2.57
220 221 5.295152 CCATGAAGATGACGATCAAGATGA 58.705 41.667 0.00 0.00 0.00 2.92
221 222 4.451435 CCCATGAAGATGACGATCAAGATG 59.549 45.833 0.00 0.00 0.00 2.90
222 223 4.639334 CCCATGAAGATGACGATCAAGAT 58.361 43.478 0.00 0.00 0.00 2.40
224 225 2.547211 GCCCATGAAGATGACGATCAAG 59.453 50.000 0.00 0.00 0.00 3.02
226 227 1.202687 GGCCCATGAAGATGACGATCA 60.203 52.381 0.00 0.00 0.00 2.92
227 228 1.517242 GGCCCATGAAGATGACGATC 58.483 55.000 0.00 0.00 0.00 3.69
228 229 0.250038 CGGCCCATGAAGATGACGAT 60.250 55.000 0.00 0.00 0.00 3.73
229 230 1.143838 CGGCCCATGAAGATGACGA 59.856 57.895 0.00 0.00 0.00 4.20
230 231 1.889105 CCGGCCCATGAAGATGACG 60.889 63.158 0.00 0.00 0.00 4.35
251 252 4.135153 CAGGAGCGTCCCCGACTG 62.135 72.222 1.06 0.00 37.19 3.51
252 253 4.680537 ACAGGAGCGTCCCCGACT 62.681 66.667 1.06 0.00 37.19 4.18
271 272 2.127118 CAAGTTGCTGCGGCTTCG 60.127 61.111 20.27 0.00 39.59 3.79
272 273 1.081840 GTCAAGTTGCTGCGGCTTC 60.082 57.895 20.27 11.52 39.59 3.86
274 275 3.349006 CGTCAAGTTGCTGCGGCT 61.349 61.111 20.27 0.00 39.59 5.52
278 279 1.206072 CTCTGCGTCAAGTTGCTGC 59.794 57.895 11.00 11.00 0.00 5.25
280 281 0.948141 GCTCTCTGCGTCAAGTTGCT 60.948 55.000 0.00 0.00 0.00 3.91
281 282 1.495069 GCTCTCTGCGTCAAGTTGC 59.505 57.895 0.00 0.00 0.00 4.17
291 292 0.741326 TCCTATGTGACGCTCTCTGC 59.259 55.000 0.00 0.00 38.57 4.26
292 293 2.020720 ACTCCTATGTGACGCTCTCTG 58.979 52.381 0.00 0.00 0.00 3.35
293 294 2.428544 ACTCCTATGTGACGCTCTCT 57.571 50.000 0.00 0.00 0.00 3.10
294 295 2.223618 GGAACTCCTATGTGACGCTCTC 60.224 54.545 0.00 0.00 0.00 3.20
296 297 1.202428 GGGAACTCCTATGTGACGCTC 60.202 57.143 0.00 0.00 35.95 5.03
297 298 0.824759 GGGAACTCCTATGTGACGCT 59.175 55.000 0.00 0.00 35.95 5.07
298 299 0.179081 GGGGAACTCCTATGTGACGC 60.179 60.000 0.00 0.00 35.95 5.19
299 300 0.464452 GGGGGAACTCCTATGTGACG 59.536 60.000 0.00 0.00 35.95 4.35
300 301 1.209747 GTGGGGGAACTCCTATGTGAC 59.790 57.143 0.00 0.00 35.95 3.67
301 302 1.203376 TGTGGGGGAACTCCTATGTGA 60.203 52.381 0.00 0.00 35.95 3.58
304 305 2.037251 CGTATGTGGGGGAACTCCTATG 59.963 54.545 0.00 0.00 35.95 2.23
305 306 2.326428 CGTATGTGGGGGAACTCCTAT 58.674 52.381 0.00 0.00 35.95 2.57
306 307 1.690209 CCGTATGTGGGGGAACTCCTA 60.690 57.143 0.00 0.00 35.95 2.94
307 308 0.981277 CCGTATGTGGGGGAACTCCT 60.981 60.000 0.00 0.00 35.95 3.69
309 310 0.177373 GTCCGTATGTGGGGGAACTC 59.823 60.000 0.00 0.00 0.00 3.01
310 311 0.252558 AGTCCGTATGTGGGGGAACT 60.253 55.000 0.00 0.00 0.00 3.01
311 312 0.616891 AAGTCCGTATGTGGGGGAAC 59.383 55.000 0.00 0.00 0.00 3.62
312 313 1.364269 AAAGTCCGTATGTGGGGGAA 58.636 50.000 0.00 0.00 0.00 3.97
313 314 2.250921 TAAAGTCCGTATGTGGGGGA 57.749 50.000 0.00 0.00 0.00 4.81
314 315 3.353370 TTTAAAGTCCGTATGTGGGGG 57.647 47.619 0.00 0.00 0.00 5.40
315 316 5.907866 ATTTTTAAAGTCCGTATGTGGGG 57.092 39.130 0.00 0.00 0.00 4.96
317 318 6.317893 AGGCTATTTTTAAAGTCCGTATGTGG 59.682 38.462 0.00 0.00 0.00 4.17
318 319 7.316544 AGGCTATTTTTAAAGTCCGTATGTG 57.683 36.000 0.00 0.00 0.00 3.21
346 347 9.878599 GACCCATGTAATTTCGAAATACATTAG 57.121 33.333 26.15 23.16 29.89 1.73
347 348 9.621629 AGACCCATGTAATTTCGAAATACATTA 57.378 29.630 26.15 15.66 29.89 1.90
348 349 8.405531 CAGACCCATGTAATTTCGAAATACATT 58.594 33.333 26.15 18.92 29.89 2.71
350 351 6.317642 CCAGACCCATGTAATTTCGAAATACA 59.682 38.462 22.99 23.12 0.00 2.29
351 352 6.317893 ACCAGACCCATGTAATTTCGAAATAC 59.682 38.462 22.99 19.19 0.00 1.89
352 353 6.419791 ACCAGACCCATGTAATTTCGAAATA 58.580 36.000 22.99 8.95 0.00 1.40
353 354 5.261216 ACCAGACCCATGTAATTTCGAAAT 58.739 37.500 17.60 17.60 0.00 2.17
354 355 4.658063 ACCAGACCCATGTAATTTCGAAA 58.342 39.130 13.91 13.91 0.00 3.46
355 356 4.258543 GACCAGACCCATGTAATTTCGAA 58.741 43.478 0.00 0.00 0.00 3.71
356 357 3.370103 GGACCAGACCCATGTAATTTCGA 60.370 47.826 0.00 0.00 0.00 3.71
357 358 2.943033 GGACCAGACCCATGTAATTTCG 59.057 50.000 0.00 0.00 0.00 3.46
358 359 3.963129 TGGACCAGACCCATGTAATTTC 58.037 45.455 0.00 0.00 0.00 2.17
360 361 4.608170 ATTGGACCAGACCCATGTAATT 57.392 40.909 0.00 0.00 33.04 1.40
361 362 5.725551 TTATTGGACCAGACCCATGTAAT 57.274 39.130 0.00 0.00 33.04 1.89
362 363 5.522315 TTTATTGGACCAGACCCATGTAA 57.478 39.130 0.00 0.00 33.04 2.41
363 364 5.522315 TTTTATTGGACCAGACCCATGTA 57.478 39.130 0.00 0.00 33.04 2.29
364 365 4.396357 TTTTATTGGACCAGACCCATGT 57.604 40.909 0.00 0.00 33.04 3.21
365 366 4.160252 CCTTTTTATTGGACCAGACCCATG 59.840 45.833 0.00 0.00 33.04 3.66
366 367 4.202781 ACCTTTTTATTGGACCAGACCCAT 60.203 41.667 0.00 0.00 33.04 4.00
367 368 3.141272 ACCTTTTTATTGGACCAGACCCA 59.859 43.478 0.00 0.00 0.00 4.51
368 369 3.509967 CACCTTTTTATTGGACCAGACCC 59.490 47.826 0.00 0.00 0.00 4.46
369 370 4.217767 GTCACCTTTTTATTGGACCAGACC 59.782 45.833 0.00 0.00 0.00 3.85
370 371 4.083484 CGTCACCTTTTTATTGGACCAGAC 60.083 45.833 0.00 0.00 0.00 3.51
371 372 4.069304 CGTCACCTTTTTATTGGACCAGA 58.931 43.478 0.00 0.00 0.00 3.86
372 373 3.365969 GCGTCACCTTTTTATTGGACCAG 60.366 47.826 0.00 0.00 0.00 4.00
374 375 2.554893 TGCGTCACCTTTTTATTGGACC 59.445 45.455 0.00 0.00 0.00 4.46
375 376 3.907894 TGCGTCACCTTTTTATTGGAC 57.092 42.857 0.00 0.00 0.00 4.02
376 377 3.632604 TGTTGCGTCACCTTTTTATTGGA 59.367 39.130 0.00 0.00 0.00 3.53
377 378 3.733727 GTGTTGCGTCACCTTTTTATTGG 59.266 43.478 0.43 0.00 32.81 3.16
378 379 4.947077 GTGTTGCGTCACCTTTTTATTG 57.053 40.909 0.43 0.00 32.81 1.90
388 389 3.493503 GGCTATTATAGGTGTTGCGTCAC 59.506 47.826 1.12 3.00 37.57 3.67
389 390 3.386726 AGGCTATTATAGGTGTTGCGTCA 59.613 43.478 1.12 0.00 0.00 4.35
390 391 3.988517 GAGGCTATTATAGGTGTTGCGTC 59.011 47.826 1.12 0.00 0.00 5.19
391 392 3.641906 AGAGGCTATTATAGGTGTTGCGT 59.358 43.478 1.12 0.00 0.00 5.24
392 393 3.990469 CAGAGGCTATTATAGGTGTTGCG 59.010 47.826 1.12 0.00 0.00 4.85
393 394 4.040461 TCCAGAGGCTATTATAGGTGTTGC 59.960 45.833 1.12 0.00 0.00 4.17
394 395 5.542779 GTCCAGAGGCTATTATAGGTGTTG 58.457 45.833 1.12 0.00 0.00 3.33
398 399 4.383931 TCGTCCAGAGGCTATTATAGGT 57.616 45.455 1.12 0.00 0.00 3.08
399 400 5.723672 TTTCGTCCAGAGGCTATTATAGG 57.276 43.478 1.12 0.00 0.00 2.57
400 401 9.877178 ATAAATTTCGTCCAGAGGCTATTATAG 57.123 33.333 0.00 0.00 0.00 1.31
401 402 9.653287 CATAAATTTCGTCCAGAGGCTATTATA 57.347 33.333 0.00 0.00 0.00 0.98
404 405 6.591935 TCATAAATTTCGTCCAGAGGCTATT 58.408 36.000 0.00 0.00 0.00 1.73
405 406 6.174720 TCATAAATTTCGTCCAGAGGCTAT 57.825 37.500 0.00 0.00 0.00 2.97
406 407 5.607939 TCATAAATTTCGTCCAGAGGCTA 57.392 39.130 0.00 0.00 0.00 3.93
407 408 4.487714 TCATAAATTTCGTCCAGAGGCT 57.512 40.909 0.00 0.00 0.00 4.58
409 410 5.065218 CCACTTCATAAATTTCGTCCAGAGG 59.935 44.000 0.00 0.00 0.00 3.69
410 411 5.447818 GCCACTTCATAAATTTCGTCCAGAG 60.448 44.000 0.00 0.00 0.00 3.35
411 412 4.394920 GCCACTTCATAAATTTCGTCCAGA 59.605 41.667 0.00 0.00 0.00 3.86
412 413 4.155826 TGCCACTTCATAAATTTCGTCCAG 59.844 41.667 0.00 0.00 0.00 3.86
413 414 4.075682 TGCCACTTCATAAATTTCGTCCA 58.924 39.130 0.00 0.00 0.00 4.02
414 415 4.695217 TGCCACTTCATAAATTTCGTCC 57.305 40.909 0.00 0.00 0.00 4.79
415 416 6.124088 AGATGCCACTTCATAAATTTCGTC 57.876 37.500 0.00 0.00 0.00 4.20
416 417 6.071952 ACAAGATGCCACTTCATAAATTTCGT 60.072 34.615 0.00 0.00 0.00 3.85
417 418 6.324819 ACAAGATGCCACTTCATAAATTTCG 58.675 36.000 0.00 0.00 0.00 3.46
425 426 6.767902 ACGAAATATACAAGATGCCACTTCAT 59.232 34.615 0.00 0.00 0.00 2.57
426 427 6.112734 ACGAAATATACAAGATGCCACTTCA 58.887 36.000 0.00 0.00 0.00 3.02
427 428 6.292919 GGACGAAATATACAAGATGCCACTTC 60.293 42.308 0.00 0.00 0.00 3.01
429 430 5.057149 GGACGAAATATACAAGATGCCACT 58.943 41.667 0.00 0.00 0.00 4.00
430 431 4.814234 TGGACGAAATATACAAGATGCCAC 59.186 41.667 0.00 0.00 0.00 5.01
431 432 5.029807 TGGACGAAATATACAAGATGCCA 57.970 39.130 0.00 0.00 0.00 4.92
432 433 5.049405 CCTTGGACGAAATATACAAGATGCC 60.049 44.000 0.00 0.00 40.60 4.40
434 435 5.760253 AGCCTTGGACGAAATATACAAGATG 59.240 40.000 0.00 0.00 40.60 2.90
437 438 5.584649 TGAAGCCTTGGACGAAATATACAAG 59.415 40.000 0.00 0.00 38.52 3.16
440 441 5.560953 GCATGAAGCCTTGGACGAAATATAC 60.561 44.000 0.00 0.00 37.23 1.47
442 443 3.316308 GCATGAAGCCTTGGACGAAATAT 59.684 43.478 0.00 0.00 37.23 1.28
444 445 1.474077 GCATGAAGCCTTGGACGAAAT 59.526 47.619 0.00 0.00 37.23 2.17
445 446 0.881118 GCATGAAGCCTTGGACGAAA 59.119 50.000 0.00 0.00 37.23 3.46
447 448 0.955428 GTGCATGAAGCCTTGGACGA 60.955 55.000 0.00 0.00 44.83 4.20
448 449 0.957395 AGTGCATGAAGCCTTGGACG 60.957 55.000 0.00 0.00 44.83 4.79
449 450 0.807496 GAGTGCATGAAGCCTTGGAC 59.193 55.000 0.00 0.00 44.83 4.02
450 451 0.674581 CGAGTGCATGAAGCCTTGGA 60.675 55.000 0.00 0.00 44.83 3.53
451 452 0.957395 ACGAGTGCATGAAGCCTTGG 60.957 55.000 0.00 0.00 44.83 3.61
452 453 0.877071 AACGAGTGCATGAAGCCTTG 59.123 50.000 0.00 0.00 44.83 3.61
454 455 2.283298 CATAACGAGTGCATGAAGCCT 58.717 47.619 0.00 0.00 44.83 4.58
455 456 1.331756 CCATAACGAGTGCATGAAGCC 59.668 52.381 0.00 0.00 44.83 4.35
456 457 2.009774 ACCATAACGAGTGCATGAAGC 58.990 47.619 0.00 0.00 45.96 3.86
457 458 2.352651 CCACCATAACGAGTGCATGAAG 59.647 50.000 0.00 0.00 32.48 3.02
458 459 2.355197 CCACCATAACGAGTGCATGAA 58.645 47.619 0.00 0.00 32.48 2.57
459 460 2.011548 GCCACCATAACGAGTGCATGA 61.012 52.381 0.00 0.00 32.48 3.07
460 461 0.378257 GCCACCATAACGAGTGCATG 59.622 55.000 0.00 0.00 32.48 4.06
461 462 0.253044 AGCCACCATAACGAGTGCAT 59.747 50.000 0.00 0.00 32.48 3.96
463 464 0.727398 GAAGCCACCATAACGAGTGC 59.273 55.000 0.00 0.00 32.48 4.40
466 467 3.125316 GTCTTTGAAGCCACCATAACGAG 59.875 47.826 0.00 0.00 0.00 4.18
467 468 3.071479 GTCTTTGAAGCCACCATAACGA 58.929 45.455 0.00 0.00 0.00 3.85
468 469 2.161609 GGTCTTTGAAGCCACCATAACG 59.838 50.000 0.00 0.00 0.00 3.18
472 473 1.425066 TCAGGTCTTTGAAGCCACCAT 59.575 47.619 4.91 0.00 0.00 3.55
474 475 1.981256 TTCAGGTCTTTGAAGCCACC 58.019 50.000 6.87 1.67 32.39 4.61
475 476 3.569701 TGATTTCAGGTCTTTGAAGCCAC 59.430 43.478 6.87 0.00 38.25 5.01
478 479 5.182760 AGTGATGATTTCAGGTCTTTGAAGC 59.817 40.000 0.00 0.00 38.25 3.86
479 480 6.401903 CGAGTGATGATTTCAGGTCTTTGAAG 60.402 42.308 0.00 0.00 38.25 3.02
482 483 4.692625 ACGAGTGATGATTTCAGGTCTTTG 59.307 41.667 0.00 0.00 34.17 2.77
485 486 5.186021 AGTTACGAGTGATGATTTCAGGTCT 59.814 40.000 0.00 0.00 34.17 3.85
486 487 5.411781 AGTTACGAGTGATGATTTCAGGTC 58.588 41.667 0.00 0.00 34.17 3.85
488 489 4.806247 GGAGTTACGAGTGATGATTTCAGG 59.194 45.833 0.00 0.00 34.17 3.86
490 491 4.082408 ACGGAGTTACGAGTGATGATTTCA 60.082 41.667 0.00 0.00 37.78 2.69
491 492 4.421948 ACGGAGTTACGAGTGATGATTTC 58.578 43.478 0.00 0.00 37.78 2.17
508 509 1.523758 CAAGGGGAACAAGAACGGAG 58.476 55.000 0.00 0.00 0.00 4.63
509 510 0.536460 GCAAGGGGAACAAGAACGGA 60.536 55.000 0.00 0.00 0.00 4.69
510 511 1.852067 CGCAAGGGGAACAAGAACGG 61.852 60.000 0.00 0.00 0.00 4.44
511 512 1.574428 CGCAAGGGGAACAAGAACG 59.426 57.895 0.00 0.00 0.00 3.95
512 513 1.285950 GCGCAAGGGGAACAAGAAC 59.714 57.895 0.30 0.00 38.28 3.01
514 515 1.074775 ATGCGCAAGGGGAACAAGA 59.925 52.632 17.11 0.00 38.28 3.02
515 516 1.213537 CATGCGCAAGGGGAACAAG 59.786 57.895 17.11 0.00 38.28 3.16
516 517 2.929903 GCATGCGCAAGGGGAACAA 61.930 57.895 17.11 0.00 38.36 2.83
518 519 4.133796 GGCATGCGCAAGGGGAAC 62.134 66.667 17.11 0.00 41.24 3.62
519 520 3.961225 ATGGCATGCGCAAGGGGAA 62.961 57.895 17.11 0.00 41.24 3.97
520 521 4.445710 ATGGCATGCGCAAGGGGA 62.446 61.111 17.11 0.00 41.24 4.81
521 522 3.908081 GATGGCATGCGCAAGGGG 61.908 66.667 17.11 5.70 41.24 4.79
522 523 2.416244 GATGATGGCATGCGCAAGGG 62.416 60.000 17.11 8.64 41.24 3.95
523 524 1.007734 GATGATGGCATGCGCAAGG 60.008 57.895 17.11 11.64 41.24 3.61
524 525 0.040336 GAGATGATGGCATGCGCAAG 60.040 55.000 17.11 12.48 41.24 4.01
525 526 1.449726 GGAGATGATGGCATGCGCAA 61.450 55.000 17.11 0.00 41.24 4.85
527 528 1.241990 ATGGAGATGATGGCATGCGC 61.242 55.000 12.44 0.00 34.11 6.09
528 529 0.521735 CATGGAGATGATGGCATGCG 59.478 55.000 12.44 0.00 34.11 4.73
529 530 1.617322 ACATGGAGATGATGGCATGC 58.383 50.000 9.90 9.90 34.11 4.06
530 531 4.665833 AAAACATGGAGATGATGGCATG 57.334 40.909 3.81 0.00 34.11 4.06
550 551 4.834496 AGGATGAACATTGGAGCAAGAAAA 59.166 37.500 0.00 0.00 0.00 2.29
551 552 4.410099 AGGATGAACATTGGAGCAAGAAA 58.590 39.130 0.00 0.00 0.00 2.52
552 553 4.038271 AGGATGAACATTGGAGCAAGAA 57.962 40.909 0.00 0.00 0.00 2.52
553 554 3.726557 AGGATGAACATTGGAGCAAGA 57.273 42.857 0.00 0.00 0.00 3.02
554 555 4.015084 AGAAGGATGAACATTGGAGCAAG 58.985 43.478 0.00 0.00 0.00 4.01
555 556 4.012374 GAGAAGGATGAACATTGGAGCAA 58.988 43.478 0.00 0.00 0.00 3.91
557 558 2.948315 GGAGAAGGATGAACATTGGAGC 59.052 50.000 0.00 0.00 0.00 4.70
558 559 4.226427 TGGAGAAGGATGAACATTGGAG 57.774 45.455 0.00 0.00 0.00 3.86
559 560 4.043310 ACTTGGAGAAGGATGAACATTGGA 59.957 41.667 0.00 0.00 32.95 3.53
560 561 4.338879 ACTTGGAGAAGGATGAACATTGG 58.661 43.478 0.00 0.00 32.95 3.16
561 562 5.972107 AACTTGGAGAAGGATGAACATTG 57.028 39.130 0.00 0.00 32.95 2.82
562 563 6.183347 CCTAACTTGGAGAAGGATGAACATT 58.817 40.000 0.00 0.00 32.95 2.71
563 564 5.749462 CCTAACTTGGAGAAGGATGAACAT 58.251 41.667 0.00 0.00 32.95 2.71
564 565 4.565652 GCCTAACTTGGAGAAGGATGAACA 60.566 45.833 0.00 0.00 32.95 3.18
565 566 3.942115 GCCTAACTTGGAGAAGGATGAAC 59.058 47.826 0.00 0.00 32.95 3.18
566 567 3.054361 GGCCTAACTTGGAGAAGGATGAA 60.054 47.826 0.00 0.00 32.95 2.57
568 569 2.422093 GGGCCTAACTTGGAGAAGGATG 60.422 54.545 0.84 0.00 32.95 3.51
569 570 1.847088 GGGCCTAACTTGGAGAAGGAT 59.153 52.381 0.84 0.00 32.95 3.24
570 571 1.203440 AGGGCCTAACTTGGAGAAGGA 60.203 52.381 2.82 0.00 32.95 3.36
571 572 1.290134 AGGGCCTAACTTGGAGAAGG 58.710 55.000 2.82 0.00 32.95 3.46
572 573 2.305927 TGAAGGGCCTAACTTGGAGAAG 59.694 50.000 6.41 0.00 35.07 2.85
573 574 2.344592 TGAAGGGCCTAACTTGGAGAA 58.655 47.619 6.41 0.00 0.00 2.87
574 575 2.038863 TGAAGGGCCTAACTTGGAGA 57.961 50.000 6.41 0.00 0.00 3.71
575 576 3.372440 AATGAAGGGCCTAACTTGGAG 57.628 47.619 6.41 0.00 0.00 3.86
576 577 3.181423 ACAAATGAAGGGCCTAACTTGGA 60.181 43.478 6.41 0.00 0.00 3.53
577 578 3.165071 ACAAATGAAGGGCCTAACTTGG 58.835 45.455 6.41 0.19 0.00 3.61
578 579 5.622233 GCTTACAAATGAAGGGCCTAACTTG 60.622 44.000 6.41 11.03 0.00 3.16
581 582 3.761752 TGCTTACAAATGAAGGGCCTAAC 59.238 43.478 6.41 4.92 0.00 2.34
582 583 4.040936 TGCTTACAAATGAAGGGCCTAA 57.959 40.909 6.41 0.00 0.00 2.69
584 585 2.603075 TGCTTACAAATGAAGGGCCT 57.397 45.000 0.00 0.00 0.00 5.19
585 586 3.676291 TTTGCTTACAAATGAAGGGCC 57.324 42.857 0.00 0.00 40.84 5.80
586 587 4.376146 TGTTTTGCTTACAAATGAAGGGC 58.624 39.130 0.00 0.00 44.96 5.19
587 588 6.917217 TTTGTTTTGCTTACAAATGAAGGG 57.083 33.333 7.27 0.00 44.96 3.95
612 613 5.972107 ATGATGCTGCCTAAATTGGATAC 57.028 39.130 0.00 0.00 0.00 2.24
616 617 6.208007 TGAGAATATGATGCTGCCTAAATTGG 59.792 38.462 0.00 0.00 0.00 3.16
617 618 7.210718 TGAGAATATGATGCTGCCTAAATTG 57.789 36.000 0.00 0.00 0.00 2.32
618 619 7.668469 TCATGAGAATATGATGCTGCCTAAATT 59.332 33.333 0.00 0.00 32.39 1.82
620 621 6.536447 TCATGAGAATATGATGCTGCCTAAA 58.464 36.000 0.00 0.00 32.39 1.85
621 622 6.117975 TCATGAGAATATGATGCTGCCTAA 57.882 37.500 0.00 0.00 32.39 2.69
622 623 5.750352 TCATGAGAATATGATGCTGCCTA 57.250 39.130 0.00 0.00 32.39 3.93
626 627 9.216117 TCTAATGTTCATGAGAATATGATGCTG 57.784 33.333 0.00 0.00 35.97 4.41
627 628 9.788889 TTCTAATGTTCATGAGAATATGATGCT 57.211 29.630 8.14 0.00 35.97 3.79
652 653 9.939802 AGGTACTTTCGTTTCTTAGTAATGATT 57.060 29.630 0.00 0.00 27.25 2.57
653 654 9.367444 CAGGTACTTTCGTTTCTTAGTAATGAT 57.633 33.333 0.00 0.00 34.60 2.45
654 655 7.816031 CCAGGTACTTTCGTTTCTTAGTAATGA 59.184 37.037 0.00 0.00 34.60 2.57
655 656 7.601508 ACCAGGTACTTTCGTTTCTTAGTAATG 59.398 37.037 0.00 0.00 34.60 1.90
656 657 7.674120 ACCAGGTACTTTCGTTTCTTAGTAAT 58.326 34.615 0.00 0.00 34.60 1.89
657 658 7.054491 ACCAGGTACTTTCGTTTCTTAGTAA 57.946 36.000 0.00 0.00 34.60 2.24
659 660 5.541953 ACCAGGTACTTTCGTTTCTTAGT 57.458 39.130 0.00 0.00 34.60 2.24
660 661 8.543862 AATTACCAGGTACTTTCGTTTCTTAG 57.456 34.615 0.00 0.00 34.60 2.18
661 662 8.907222 AAATTACCAGGTACTTTCGTTTCTTA 57.093 30.769 8.78 0.00 34.60 2.10
663 664 8.152898 ACTAAATTACCAGGTACTTTCGTTTCT 58.847 33.333 16.28 0.00 34.60 2.52
666 667 7.173735 CCAACTAAATTACCAGGTACTTTCGTT 59.826 37.037 19.07 19.07 34.60 3.85
667 668 6.652062 CCAACTAAATTACCAGGTACTTTCGT 59.348 38.462 16.28 13.82 34.60 3.85
668 669 6.652062 ACCAACTAAATTACCAGGTACTTTCG 59.348 38.462 16.28 13.28 34.60 3.46
669 670 7.574404 GCACCAACTAAATTACCAGGTACTTTC 60.574 40.741 16.28 0.00 34.60 2.62
670 671 6.208007 GCACCAACTAAATTACCAGGTACTTT 59.792 38.462 16.84 16.84 34.60 2.66
671 672 5.708697 GCACCAACTAAATTACCAGGTACTT 59.291 40.000 0.00 0.00 34.60 2.24
673 674 4.093850 CGCACCAACTAAATTACCAGGTAC 59.906 45.833 0.00 0.00 0.00 3.34
674 675 4.255301 CGCACCAACTAAATTACCAGGTA 58.745 43.478 0.00 0.00 0.00 3.08
677 678 3.749088 TCACGCACCAACTAAATTACCAG 59.251 43.478 0.00 0.00 0.00 4.00
681 682 3.670625 AGCTCACGCACCAACTAAATTA 58.329 40.909 0.00 0.00 39.10 1.40
682 683 2.484264 GAGCTCACGCACCAACTAAATT 59.516 45.455 9.40 0.00 39.10 1.82
685 686 0.679505 AGAGCTCACGCACCAACTAA 59.320 50.000 17.77 0.00 39.10 2.24
686 687 1.472878 CTAGAGCTCACGCACCAACTA 59.527 52.381 17.77 0.00 39.10 2.24
689 690 1.541379 TACTAGAGCTCACGCACCAA 58.459 50.000 17.77 0.00 39.10 3.67
691 692 2.873133 ATTACTAGAGCTCACGCACC 57.127 50.000 17.77 0.00 39.10 5.01
693 694 5.124936 TGAACTAATTACTAGAGCTCACGCA 59.875 40.000 17.77 0.00 39.10 5.24
694 695 5.579718 TGAACTAATTACTAGAGCTCACGC 58.420 41.667 17.77 0.00 0.00 5.34
695 696 6.787225 ACTGAACTAATTACTAGAGCTCACG 58.213 40.000 17.77 8.64 0.00 4.35
697 698 9.409918 ACATACTGAACTAATTACTAGAGCTCA 57.590 33.333 17.77 0.82 0.00 4.26
705 706 9.915629 GCTGCTATACATACTGAACTAATTACT 57.084 33.333 0.00 0.00 0.00 2.24
706 707 9.692749 TGCTGCTATACATACTGAACTAATTAC 57.307 33.333 0.00 0.00 0.00 1.89
707 708 9.914131 CTGCTGCTATACATACTGAACTAATTA 57.086 33.333 0.00 0.00 0.00 1.40
708 709 7.875041 CCTGCTGCTATACATACTGAACTAATT 59.125 37.037 0.00 0.00 0.00 1.40
710 711 6.239317 CCCTGCTGCTATACATACTGAACTAA 60.239 42.308 0.00 0.00 0.00 2.24
712 713 4.039730 CCCTGCTGCTATACATACTGAACT 59.960 45.833 0.00 0.00 0.00 3.01
713 714 4.310769 CCCTGCTGCTATACATACTGAAC 58.689 47.826 0.00 0.00 0.00 3.18
714 715 3.324846 CCCCTGCTGCTATACATACTGAA 59.675 47.826 0.00 0.00 0.00 3.02
715 716 2.899900 CCCCTGCTGCTATACATACTGA 59.100 50.000 0.00 0.00 0.00 3.41
716 717 2.613977 GCCCCTGCTGCTATACATACTG 60.614 54.545 0.00 0.00 33.53 2.74
718 719 2.100605 GCCCCTGCTGCTATACATAC 57.899 55.000 0.00 0.00 33.53 2.39
730 731 0.821711 TTGTTACACACAGCCCCTGC 60.822 55.000 0.00 0.00 36.48 4.85
732 733 1.547675 CCATTGTTACACACAGCCCCT 60.548 52.381 0.00 0.00 36.48 4.79
733 734 0.887933 CCATTGTTACACACAGCCCC 59.112 55.000 0.00 0.00 36.48 5.80
735 736 4.457603 TCAATACCATTGTTACACACAGCC 59.542 41.667 0.00 0.00 36.48 4.85
736 737 5.621197 TCAATACCATTGTTACACACAGC 57.379 39.130 0.00 0.00 36.48 4.40
737 738 7.144722 ACATCAATACCATTGTTACACACAG 57.855 36.000 0.00 0.00 36.48 3.66
738 739 6.150307 GGACATCAATACCATTGTTACACACA 59.850 38.462 0.00 0.00 0.00 3.72
739 740 6.374333 AGGACATCAATACCATTGTTACACAC 59.626 38.462 0.00 0.00 0.00 3.82
740 741 6.480763 AGGACATCAATACCATTGTTACACA 58.519 36.000 0.00 0.00 0.00 3.72
741 742 6.597672 TGAGGACATCAATACCATTGTTACAC 59.402 38.462 0.00 0.00 34.02 2.90
742 743 6.716284 TGAGGACATCAATACCATTGTTACA 58.284 36.000 0.00 0.00 34.02 2.41
743 744 7.807977 ATGAGGACATCAATACCATTGTTAC 57.192 36.000 0.00 0.00 42.53 2.50
759 760 1.257750 CCCCGTCACTGATGAGGACA 61.258 60.000 0.00 0.00 42.26 4.02
760 761 0.970937 TCCCCGTCACTGATGAGGAC 60.971 60.000 0.00 0.00 42.26 3.85
762 763 0.972983 AGTCCCCGTCACTGATGAGG 60.973 60.000 0.00 0.00 39.88 3.86
764 765 0.251608 TCAGTCCCCGTCACTGATGA 60.252 55.000 0.00 0.00 44.33 2.92
766 767 4.865629 TCAGTCCCCGTCACTGAT 57.134 55.556 4.65 0.00 44.33 2.90
792 793 7.782049 TGTTGAGAGAAAAGAACTGAGAAGTA 58.218 34.615 0.00 0.00 0.00 2.24
793 794 6.644347 TGTTGAGAGAAAAGAACTGAGAAGT 58.356 36.000 0.00 0.00 0.00 3.01
801 805 7.013750 AGGAGGAAATTGTTGAGAGAAAAGAAC 59.986 37.037 0.00 0.00 0.00 3.01
918 925 2.568612 CAGTCGAAGAGGAGCGCA 59.431 61.111 11.47 0.00 36.95 6.09
953 960 4.443266 GCGGCGAGGAAGCTGAGT 62.443 66.667 12.98 0.00 45.94 3.41
1005 1017 0.895530 ATGCGAACGAGGAGGAAGAA 59.104 50.000 0.00 0.00 0.00 2.52
1039 1057 4.821589 CTCCGCCCAGTTCCTCGC 62.822 72.222 0.00 0.00 0.00 5.03
1428 1767 9.766277 GCAGTGAATAAACAAAATCAAAACAAA 57.234 25.926 0.00 0.00 0.00 2.83
1429 1768 8.113062 CGCAGTGAATAAACAAAATCAAAACAA 58.887 29.630 0.00 0.00 0.00 2.83
1431 1770 7.043059 TCCGCAGTGAATAAACAAAATCAAAAC 60.043 33.333 0.00 0.00 0.00 2.43
1435 1791 5.697473 TCCGCAGTGAATAAACAAAATCA 57.303 34.783 0.00 0.00 0.00 2.57
1510 1869 5.391256 TGTTCTCCTCAGTACTTTCTACCA 58.609 41.667 0.00 0.00 0.00 3.25
1557 2078 5.065346 TCAGCACTTCGTATTTGTTGTTTGA 59.935 36.000 0.00 0.00 0.00 2.69
1627 2152 1.068055 GTCACTGCCCTTGCTGAAATG 60.068 52.381 0.00 0.00 39.51 2.32
1649 2174 9.170584 GCACTTTGTCTTTATCAAACTAAGAAC 57.829 33.333 0.00 0.00 32.49 3.01
1955 3211 2.818921 AGACTCTTGAGAGATGGTGCT 58.181 47.619 14.61 0.33 44.74 4.40
2508 4022 2.224843 TGCACACCTGATTCTCAATGGT 60.225 45.455 0.00 0.00 0.00 3.55
2526 4040 5.118286 TCTCAAATCATCGATTAGCTTGCA 58.882 37.500 0.00 0.00 31.46 4.08
2681 4196 4.690122 CATTTTCTTGGATCTTGGCATCC 58.310 43.478 0.00 0.00 42.68 3.51
2732 4247 7.041780 ACGATGGCAATCTTATTGTTATCACTC 60.042 37.037 0.00 0.00 0.00 3.51
2888 4403 0.247460 TGAGAGACTTGATGGCACCG 59.753 55.000 0.00 0.00 0.00 4.94
2934 4449 2.440409 GGCTGCATCTCTTTTTCCTCA 58.560 47.619 0.50 0.00 0.00 3.86
3361 4884 2.927553 AGCGAAATGATTCTGCAACC 57.072 45.000 4.73 0.00 37.46 3.77
3882 5428 2.273557 GCATGGTGCCAATTTGCTAAG 58.726 47.619 2.90 0.00 37.42 2.18
3898 5444 4.754618 TGTGGTAAACTAGTGAACTGCATG 59.245 41.667 0.00 0.00 0.00 4.06
3909 5455 7.592938 TGATTTTGCAGAATGTGGTAAACTAG 58.407 34.615 7.28 0.00 39.31 2.57
4003 5551 4.095932 AGCGACACGAGAACATATCACTTA 59.904 41.667 0.00 0.00 0.00 2.24
4046 5710 0.526211 CATCGTTCGGTCTGTCTCCA 59.474 55.000 0.00 0.00 0.00 3.86
4068 5733 3.216292 GCCAGCCAAACACGTGGT 61.216 61.111 21.57 11.47 41.12 4.16
4134 5813 5.180117 CGGATATTGCGAATCAAAATCCTCT 59.820 40.000 0.00 0.00 38.34 3.69
4148 5827 1.523711 AGCACCACCGGATATTGCG 60.524 57.895 9.46 0.00 38.26 4.85
4203 5885 4.297510 TCCGAATTTGTTGTTCTTGCATG 58.702 39.130 0.00 0.00 0.00 4.06
4240 5922 8.020819 TGCTTTGTAGAAAATACATGTGCTAAC 58.979 33.333 9.11 0.00 0.00 2.34
4258 5941 6.214191 TCAATGTTTTCCAAGTGCTTTGTA 57.786 33.333 0.00 0.00 34.87 2.41
4260 5943 5.006941 CCTTCAATGTTTTCCAAGTGCTTTG 59.993 40.000 0.00 0.00 36.50 2.77
4279 5962 4.066578 TCTTCCTTCCTGATCTCCTTCA 57.933 45.455 0.00 0.00 0.00 3.02
4283 5966 7.072263 TGATTTATCTTCCTTCCTGATCTCC 57.928 40.000 0.00 0.00 0.00 3.71
4285 5968 7.865820 TGTTGATTTATCTTCCTTCCTGATCT 58.134 34.615 0.00 0.00 0.00 2.75
4286 5969 8.401709 GTTGTTGATTTATCTTCCTTCCTGATC 58.598 37.037 0.00 0.00 0.00 2.92
4287 5970 8.112183 AGTTGTTGATTTATCTTCCTTCCTGAT 58.888 33.333 0.00 0.00 0.00 2.90
4288 5971 7.461749 AGTTGTTGATTTATCTTCCTTCCTGA 58.538 34.615 0.00 0.00 0.00 3.86
4295 5978 7.604164 TCTGACTGAGTTGTTGATTTATCTTCC 59.396 37.037 0.00 0.00 0.00 3.46
4301 5984 6.650807 GTCCATCTGACTGAGTTGTTGATTTA 59.349 38.462 0.00 0.00 41.03 1.40
4302 5985 5.471456 GTCCATCTGACTGAGTTGTTGATTT 59.529 40.000 0.00 0.00 41.03 2.17
4303 5986 4.999950 GTCCATCTGACTGAGTTGTTGATT 59.000 41.667 0.00 0.00 41.03 2.57
4309 5992 4.263018 TCTTGTCCATCTGACTGAGTTG 57.737 45.455 0.00 0.00 44.75 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.