Multiple sequence alignment - TraesCS3B01G443100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G443100 chr3B 100.000 4151 0 0 1 4151 683677409 683681559 0.000000e+00 7666.0
1 TraesCS3B01G443100 chr3B 90.998 822 72 2 3332 4151 683760050 683760871 0.000000e+00 1107.0
2 TraesCS3B01G443100 chr3B 90.998 822 73 1 3331 4151 684097051 684097872 0.000000e+00 1107.0
3 TraesCS3B01G443100 chr3B 90.389 822 78 1 3331 4151 684041697 684042518 0.000000e+00 1079.0
4 TraesCS3B01G443100 chr3B 86.983 822 106 1 3331 4151 659080749 659079928 0.000000e+00 924.0
5 TraesCS3B01G443100 chr3B 82.739 1066 131 26 2249 3294 684040749 684041781 0.000000e+00 900.0
6 TraesCS3B01G443100 chr3B 85.109 779 97 8 2527 3294 684096365 684097135 0.000000e+00 778.0
7 TraesCS3B01G443100 chr3B 82.998 894 117 17 2416 3294 683759260 683760133 0.000000e+00 776.0
8 TraesCS3B01G443100 chr3B 80.948 1013 141 33 2153 3136 684249768 684250757 0.000000e+00 754.0
9 TraesCS3B01G443100 chr3B 94.427 323 11 5 757 1072 683481501 683481823 1.340000e-134 490.0
10 TraesCS3B01G443100 chr3B 94.118 323 12 5 757 1072 683503042 683503364 6.240000e-133 484.0
11 TraesCS3B01G443100 chr3B 96.259 294 9 2 1070 1363 805623026 805623317 8.070000e-132 481.0
12 TraesCS3B01G443100 chr3B 80.818 636 97 15 52 682 373281576 373282191 3.750000e-130 475.0
13 TraesCS3B01G443100 chr3B 97.122 278 7 1 2151 2427 683483239 683483516 6.280000e-128 468.0
14 TraesCS3B01G443100 chr3B 96.763 278 8 1 2151 2427 683504808 683505085 2.920000e-126 462.0
15 TraesCS3B01G443100 chr3B 83.696 460 46 18 1360 1802 683503357 683503804 1.390000e-109 407.0
16 TraesCS3B01G443100 chr3B 85.287 401 46 8 1360 1751 684265225 684265621 6.460000e-108 401.0
17 TraesCS3B01G443100 chr3B 91.697 277 23 0 1360 1636 684248721 684248997 6.510000e-103 385.0
18 TraesCS3B01G443100 chr3B 82.213 461 53 17 1360 1809 684095650 684096092 1.820000e-98 370.0
19 TraesCS3B01G443100 chr3B 89.286 252 16 5 1561 1802 683481985 683482235 5.210000e-79 305.0
20 TraesCS3B01G443100 chr3B 90.698 215 18 1 1838 2052 683482674 683482886 6.790000e-73 285.0
21 TraesCS3B01G443100 chr3B 90.698 215 18 1 1838 2052 683504243 683504455 6.790000e-73 285.0
22 TraesCS3B01G443100 chr3B 82.895 152 12 5 3277 3415 683680552 683680702 1.570000e-24 124.0
23 TraesCS3B01G443100 chr3B 87.069 116 8 4 956 1071 684039791 684039899 1.570000e-24 124.0
24 TraesCS3B01G443100 chr3B 80.745 161 19 7 1908 2061 684040409 684040564 9.430000e-22 115.0
25 TraesCS3B01G443100 chr3B 78.000 200 27 11 1892 2082 684249312 684249503 4.390000e-20 110.0
26 TraesCS3B01G443100 chr3B 93.056 72 3 2 2082 2151 683483057 683483128 2.040000e-18 104.0
27 TraesCS3B01G443100 chr3B 93.056 72 3 2 2082 2151 683504626 683504697 2.040000e-18 104.0
28 TraesCS3B01G443100 chr3B 84.314 102 13 1 971 1072 684095559 684095657 3.420000e-16 97.1
29 TraesCS3B01G443100 chr3B 79.310 145 13 10 1940 2082 683759028 683759157 7.390000e-13 86.1
30 TraesCS3B01G443100 chr3A 95.772 1963 71 8 2198 4151 654358723 654360682 0.000000e+00 3155.0
31 TraesCS3B01G443100 chr3A 92.926 721 50 1 3432 4151 654389641 654390361 0.000000e+00 1048.0
32 TraesCS3B01G443100 chr3A 90.548 730 45 10 1364 2082 654357751 654358467 0.000000e+00 944.0
33 TraesCS3B01G443100 chr3A 86.861 822 107 1 3331 4151 638334207 638333386 0.000000e+00 918.0
34 TraesCS3B01G443100 chr3A 84.748 872 118 7 3294 4151 737969389 737968519 0.000000e+00 859.0
35 TraesCS3B01G443100 chr3A 80.984 1057 151 30 2253 3294 654383080 654384101 0.000000e+00 793.0
36 TraesCS3B01G443100 chr3A 81.256 1019 144 27 2136 3136 654568700 654569689 0.000000e+00 780.0
37 TraesCS3B01G443100 chr3A 82.393 585 73 13 52 612 123982896 123983474 2.240000e-132 483.0
38 TraesCS3B01G443100 chr3A 85.075 402 49 6 1360 1752 654782107 654782506 2.320000e-107 399.0
39 TraesCS3B01G443100 chr3A 90.064 312 15 4 757 1066 654357451 654357748 1.400000e-104 390.0
40 TraesCS3B01G443100 chr3A 89.892 277 28 0 1360 1636 654382638 654382914 1.420000e-94 357.0
41 TraesCS3B01G443100 chr3A 85.886 333 44 3 1360 1692 655083191 655083520 6.600000e-93 351.0
42 TraesCS3B01G443100 chr3A 80.564 319 38 10 2216 2530 638437405 638437107 1.500000e-54 224.0
43 TraesCS3B01G443100 chr3A 86.486 148 20 0 3137 3284 638334281 638334134 3.320000e-36 163.0
44 TraesCS3B01G443100 chr3A 95.098 102 5 0 3332 3433 654384018 654384119 1.190000e-35 161.0
45 TraesCS3B01G443100 chr3A 83.553 152 11 3 3144 3294 654359807 654359945 3.370000e-26 130.0
46 TraesCS3B01G443100 chr3A 85.185 135 8 3 3282 3404 654359680 654359814 1.210000e-25 128.0
47 TraesCS3B01G443100 chr3D 92.926 2064 91 16 2136 4151 519334325 519336381 0.000000e+00 2952.0
48 TraesCS3B01G443100 chr3D 90.389 822 77 2 3331 4151 519354460 519355280 0.000000e+00 1079.0
49 TraesCS3B01G443100 chr3D 86.136 880 109 2 3285 4151 498207246 498206367 0.000000e+00 937.0
50 TraesCS3B01G443100 chr3D 84.510 878 121 8 3285 4148 606300152 606301028 0.000000e+00 854.0
51 TraesCS3B01G443100 chr3D 81.723 1056 143 28 2253 3294 519353525 519354544 0.000000e+00 835.0
52 TraesCS3B01G443100 chr3D 95.793 309 12 1 1364 1671 519333631 519333939 8.010000e-137 497.0
53 TraesCS3B01G443100 chr3D 82.051 546 76 12 140 682 277068433 277067907 2.940000e-121 446.0
54 TraesCS3B01G443100 chr3D 79.604 657 103 15 52 682 512502976 512503627 3.810000e-120 442.0
55 TraesCS3B01G443100 chr3D 97.447 235 6 0 832 1066 519333394 519333628 6.460000e-108 401.0
56 TraesCS3B01G443100 chr3D 84.788 401 50 8 1360 1752 519682170 519682567 3.890000e-105 392.0
57 TraesCS3B01G443100 chr3D 92.697 178 9 2 1906 2082 519333948 519334122 1.920000e-63 254.0
58 TraesCS3B01G443100 chr3D 92.763 152 9 2 3144 3294 519335494 519335644 6.990000e-53 219.0
59 TraesCS3B01G443100 chr3D 88.514 148 17 0 3137 3284 498207262 498207115 3.300000e-41 180.0
60 TraesCS3B01G443100 chr3D 90.196 102 7 1 971 1072 519343807 519343905 3.370000e-26 130.0
61 TraesCS3B01G443100 chr3D 83.704 135 10 1 3282 3404 519335367 519335501 2.620000e-22 117.0
62 TraesCS3B01G443100 chr3D 93.846 65 4 0 2087 2151 519334182 519334246 9.500000e-17 99.0
63 TraesCS3B01G443100 chr7A 97.917 288 6 0 1072 1359 704890110 704890397 2.230000e-137 499.0
64 TraesCS3B01G443100 chr7A 81.264 459 72 11 2674 3122 429047889 429047435 3.950000e-95 359.0
65 TraesCS3B01G443100 chr7A 79.242 554 80 13 54 583 414203744 414204286 1.840000e-93 353.0
66 TraesCS3B01G443100 chrUn 97.578 289 7 0 1071 1359 42262233 42261945 2.880000e-136 496.0
67 TraesCS3B01G443100 chrUn 97.232 289 8 0 1071 1359 38969289 38969577 1.340000e-134 490.0
68 TraesCS3B01G443100 chr1B 97.241 290 8 0 1073 1362 21355723 21355434 3.730000e-135 492.0
69 TraesCS3B01G443100 chr1B 96.346 301 8 3 1070 1369 524488159 524487861 3.730000e-135 492.0
70 TraesCS3B01G443100 chr1B 79.511 654 105 18 52 680 178726436 178725787 4.930000e-119 438.0
71 TraesCS3B01G443100 chr7B 96.897 290 9 0 1070 1359 725691813 725691524 1.730000e-133 486.0
72 TraesCS3B01G443100 chr7B 81.818 473 72 11 2674 3136 375442138 375441670 6.510000e-103 385.0
73 TraesCS3B01G443100 chr2B 96.233 292 11 0 1068 1359 707253840 707253549 2.900000e-131 479.0
74 TraesCS3B01G443100 chr2B 96.207 290 11 0 1069 1358 17574986 17575275 3.750000e-130 475.0
75 TraesCS3B01G443100 chr5D 80.213 657 99 13 52 682 315620494 315621145 8.130000e-127 464.0
76 TraesCS3B01G443100 chr5D 81.101 545 94 7 140 680 218294013 218294552 1.070000e-115 427.0
77 TraesCS3B01G443100 chr7D 80.060 662 96 21 56 691 233198215 233198866 3.780000e-125 459.0
78 TraesCS3B01G443100 chr7D 81.184 473 75 11 2674 3136 381001796 381001328 6.560000e-98 368.0
79 TraesCS3B01G443100 chr4D 78.947 665 108 17 52 691 445089289 445088632 1.380000e-114 424.0
80 TraesCS3B01G443100 chr5B 78.660 403 56 16 52 429 24235099 24235496 1.490000e-59 241.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G443100 chr3B 683677409 683681559 4150 False 3895.000000 7666 91.447500 1 4151 2 chr3B.!!$F6 4150
1 TraesCS3B01G443100 chr3B 659079928 659080749 821 True 924.000000 924 86.983000 3331 4151 1 chr3B.!!$R1 820
2 TraesCS3B01G443100 chr3B 683759028 683760871 1843 False 656.366667 1107 84.435333 1940 4151 3 chr3B.!!$F7 2211
3 TraesCS3B01G443100 chr3B 684095559 684097872 2313 False 588.025000 1107 85.658500 971 4151 4 chr3B.!!$F9 3180
4 TraesCS3B01G443100 chr3B 684039791 684042518 2727 False 554.500000 1079 85.235500 956 4151 4 chr3B.!!$F8 3195
5 TraesCS3B01G443100 chr3B 373281576 373282191 615 False 475.000000 475 80.818000 52 682 1 chr3B.!!$F1 630
6 TraesCS3B01G443100 chr3B 684248721 684250757 2036 False 416.333333 754 83.548333 1360 3136 3 chr3B.!!$F10 1776
7 TraesCS3B01G443100 chr3B 683503042 683505085 2043 False 348.400000 484 91.666200 757 2427 5 chr3B.!!$F5 1670
8 TraesCS3B01G443100 chr3B 683481501 683483516 2015 False 330.400000 490 92.917800 757 2427 5 chr3B.!!$F4 1670
9 TraesCS3B01G443100 chr3A 654389641 654390361 720 False 1048.000000 1048 92.926000 3432 4151 1 chr3A.!!$F2 719
10 TraesCS3B01G443100 chr3A 654357451 654360682 3231 False 949.400000 3155 89.024400 757 4151 5 chr3A.!!$F6 3394
11 TraesCS3B01G443100 chr3A 737968519 737969389 870 True 859.000000 859 84.748000 3294 4151 1 chr3A.!!$R2 857
12 TraesCS3B01G443100 chr3A 654568700 654569689 989 False 780.000000 780 81.256000 2136 3136 1 chr3A.!!$F3 1000
13 TraesCS3B01G443100 chr3A 638333386 638334281 895 True 540.500000 918 86.673500 3137 4151 2 chr3A.!!$R3 1014
14 TraesCS3B01G443100 chr3A 123982896 123983474 578 False 483.000000 483 82.393000 52 612 1 chr3A.!!$F1 560
15 TraesCS3B01G443100 chr3A 654382638 654384119 1481 False 437.000000 793 88.658000 1360 3433 3 chr3A.!!$F7 2073
16 TraesCS3B01G443100 chr3D 519353525 519355280 1755 False 957.000000 1079 86.056000 2253 4151 2 chr3D.!!$F6 1898
17 TraesCS3B01G443100 chr3D 606300152 606301028 876 False 854.000000 854 84.510000 3285 4148 1 chr3D.!!$F4 863
18 TraesCS3B01G443100 chr3D 519333394 519336381 2987 False 648.428571 2952 92.739429 832 4151 7 chr3D.!!$F5 3319
19 TraesCS3B01G443100 chr3D 498206367 498207262 895 True 558.500000 937 87.325000 3137 4151 2 chr3D.!!$R2 1014
20 TraesCS3B01G443100 chr3D 277067907 277068433 526 True 446.000000 446 82.051000 140 682 1 chr3D.!!$R1 542
21 TraesCS3B01G443100 chr3D 512502976 512503627 651 False 442.000000 442 79.604000 52 682 1 chr3D.!!$F1 630
22 TraesCS3B01G443100 chr7A 414203744 414204286 542 False 353.000000 353 79.242000 54 583 1 chr7A.!!$F1 529
23 TraesCS3B01G443100 chr1B 178725787 178726436 649 True 438.000000 438 79.511000 52 680 1 chr1B.!!$R2 628
24 TraesCS3B01G443100 chr5D 315620494 315621145 651 False 464.000000 464 80.213000 52 682 1 chr5D.!!$F2 630
25 TraesCS3B01G443100 chr5D 218294013 218294552 539 False 427.000000 427 81.101000 140 680 1 chr5D.!!$F1 540
26 TraesCS3B01G443100 chr7D 233198215 233198866 651 False 459.000000 459 80.060000 56 691 1 chr7D.!!$F1 635
27 TraesCS3B01G443100 chr4D 445088632 445089289 657 True 424.000000 424 78.947000 52 691 1 chr4D.!!$R1 639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
696 745 0.030908 GGAGACGATGCCCTTACTCG 59.969 60.000 0.00 0.0 38.34 4.18 F
1173 1229 0.035176 TGCATTTCAGCCAAAAGGCC 59.965 50.000 13.40 0.0 43.34 5.19 F
1174 1230 0.035176 GCATTTCAGCCAAAAGGCCA 59.965 50.000 5.01 0.0 39.37 5.36 F
1617 1702 1.269998 CGACCACGACTTTCTCCTCTT 59.730 52.381 0.00 0.0 42.66 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1617 1702 0.539669 TTCTCACTGGTCAGCGAGGA 60.540 55.0 13.87 4.84 37.98 3.71 R
2587 3677 0.598680 GACAGACTTGCAGAGCACGT 60.599 55.0 0.51 0.51 43.48 4.49 R
2920 4053 0.612744 TCATCCCTGTCATTGTCGCA 59.387 50.0 0.00 0.00 0.00 5.10 R
3388 4533 0.806102 TCGATTAGCTTGCGCACCTC 60.806 55.0 11.12 1.32 39.10 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.097828 TCCGCGAATTTCGTAGGC 57.902 55.556 22.04 7.10 42.81 3.93
18 19 1.215912 TCCGCGAATTTCGTAGGCA 59.784 52.632 22.04 13.05 42.81 4.75
19 20 0.804544 TCCGCGAATTTCGTAGGCAG 60.805 55.000 22.04 8.92 42.81 4.85
20 21 0.804544 CCGCGAATTTCGTAGGCAGA 60.805 55.000 19.10 0.00 42.81 4.26
21 22 0.996462 CGCGAATTTCGTAGGCAGAA 59.004 50.000 19.10 0.00 42.81 3.02
22 23 1.005975 CGCGAATTTCGTAGGCAGAAG 60.006 52.381 19.10 0.00 42.81 2.85
23 24 1.267582 GCGAATTTCGTAGGCAGAAGC 60.268 52.381 19.10 0.00 42.81 3.86
24 25 1.999735 CGAATTTCGTAGGCAGAAGCA 59.000 47.619 10.61 0.00 37.55 3.91
25 26 2.415168 CGAATTTCGTAGGCAGAAGCAA 59.585 45.455 10.61 0.00 37.55 3.91
26 27 3.120338 CGAATTTCGTAGGCAGAAGCAAA 60.120 43.478 10.61 0.00 37.55 3.68
27 28 3.831715 ATTTCGTAGGCAGAAGCAAAC 57.168 42.857 0.00 0.00 44.61 2.93
28 29 2.248280 TTCGTAGGCAGAAGCAAACA 57.752 45.000 0.00 0.00 44.61 2.83
29 30 1.795768 TCGTAGGCAGAAGCAAACAG 58.204 50.000 0.00 0.00 44.61 3.16
30 31 0.798776 CGTAGGCAGAAGCAAACAGG 59.201 55.000 0.00 0.00 44.61 4.00
31 32 1.608025 CGTAGGCAGAAGCAAACAGGA 60.608 52.381 0.00 0.00 44.61 3.86
32 33 2.079925 GTAGGCAGAAGCAAACAGGAG 58.920 52.381 0.00 0.00 44.61 3.69
33 34 0.251077 AGGCAGAAGCAAACAGGAGG 60.251 55.000 0.00 0.00 44.61 4.30
34 35 1.583477 GCAGAAGCAAACAGGAGGC 59.417 57.895 0.00 0.00 41.58 4.70
35 36 1.174712 GCAGAAGCAAACAGGAGGCA 61.175 55.000 0.00 0.00 41.58 4.75
36 37 1.321474 CAGAAGCAAACAGGAGGCAA 58.679 50.000 0.00 0.00 0.00 4.52
37 38 1.682854 CAGAAGCAAACAGGAGGCAAA 59.317 47.619 0.00 0.00 0.00 3.68
38 39 2.101249 CAGAAGCAAACAGGAGGCAAAA 59.899 45.455 0.00 0.00 0.00 2.44
39 40 2.363359 AGAAGCAAACAGGAGGCAAAAG 59.637 45.455 0.00 0.00 0.00 2.27
40 41 0.390492 AGCAAACAGGAGGCAAAAGC 59.610 50.000 0.00 0.00 0.00 3.51
41 42 0.104671 GCAAACAGGAGGCAAAAGCA 59.895 50.000 0.00 0.00 0.00 3.91
42 43 1.856802 CAAACAGGAGGCAAAAGCAC 58.143 50.000 0.00 0.00 0.00 4.40
43 44 1.136695 CAAACAGGAGGCAAAAGCACA 59.863 47.619 0.00 0.00 0.00 4.57
44 45 1.708341 AACAGGAGGCAAAAGCACAT 58.292 45.000 0.00 0.00 0.00 3.21
45 46 1.708341 ACAGGAGGCAAAAGCACATT 58.292 45.000 0.00 0.00 0.00 2.71
46 47 1.342174 ACAGGAGGCAAAAGCACATTG 59.658 47.619 0.00 0.00 0.00 2.82
138 139 0.173935 ACAACACAACGTGAGGTCGA 59.826 50.000 0.24 0.00 36.96 4.20
188 227 0.040692 CGTGGTTCGTCAACTCGAGA 60.041 55.000 21.68 0.00 40.86 4.04
197 236 1.068741 GTCAACTCGAGACAAGGTGGT 59.931 52.381 21.68 0.00 36.06 4.16
215 254 1.560923 GTCATTGTGCGCGATAGAGT 58.439 50.000 12.10 0.00 38.56 3.24
217 256 3.309388 GTCATTGTGCGCGATAGAGTAT 58.691 45.455 12.10 0.00 38.56 2.12
221 260 1.947456 TGTGCGCGATAGAGTATGAGT 59.053 47.619 12.10 0.00 38.56 3.41
231 271 7.096966 CGCGATAGAGTATGAGTTTGTAAGTTC 60.097 40.741 0.00 0.00 39.76 3.01
284 324 7.830697 TGATTCATTCACTCAATGTTGGTCTAT 59.169 33.333 0.00 0.00 42.47 1.98
308 351 6.452494 ACATTATATGTAGCTACGCCCTAG 57.548 41.667 18.74 8.53 42.78 3.02
333 376 3.224269 GGAGTACCATAGGACAGAGGAC 58.776 54.545 0.00 0.00 35.97 3.85
341 384 0.684805 AGGACAGAGGACCGACCATC 60.685 60.000 0.00 0.00 42.04 3.51
347 390 0.381089 GAGGACCGACCATCTACGTG 59.619 60.000 0.00 0.00 42.04 4.49
348 391 1.226888 GGACCGACCATCTACGTGC 60.227 63.158 0.00 0.00 38.79 5.34
375 418 3.181451 ACACTGTTGGATGAAGCTGAAGA 60.181 43.478 0.00 0.00 0.00 2.87
398 441 3.131577 GGGAGTATGTGTGGAACGACATA 59.868 47.826 0.00 0.00 42.39 2.29
403 446 7.493320 GGAGTATGTGTGGAACGACATAATTTA 59.507 37.037 0.00 0.00 40.13 1.40
449 495 4.051922 CCGGAATCTAGTCGAATTTGAGG 58.948 47.826 0.00 0.00 0.00 3.86
464 510 6.688385 CGAATTTGAGGCATTGTTGTACTATG 59.312 38.462 0.00 0.00 35.06 2.23
585 632 1.472480 GCAGGTTGAAATGTATGCGGT 59.528 47.619 0.00 0.00 0.00 5.68
618 665 1.406341 GCGGCCTCCTGTATTTGTGTA 60.406 52.381 0.00 0.00 0.00 2.90
624 671 2.671396 CTCCTGTATTTGTGTACACGGC 59.329 50.000 20.61 9.28 31.64 5.68
638 685 2.587889 CGGCCTGGTCCCGTTATT 59.412 61.111 0.00 0.00 40.84 1.40
682 731 2.617274 GCAGGTTGCCGTTGGAGAC 61.617 63.158 0.00 0.00 37.42 3.36
693 742 1.653151 GTTGGAGACGATGCCCTTAC 58.347 55.000 0.00 0.00 0.00 2.34
694 743 1.207329 GTTGGAGACGATGCCCTTACT 59.793 52.381 0.00 0.00 0.00 2.24
695 744 1.112113 TGGAGACGATGCCCTTACTC 58.888 55.000 0.00 0.00 0.00 2.59
696 745 0.030908 GGAGACGATGCCCTTACTCG 59.969 60.000 0.00 0.00 38.34 4.18
698 747 1.134560 GAGACGATGCCCTTACTCGTT 59.865 52.381 0.00 0.00 44.89 3.85
699 748 1.135083 AGACGATGCCCTTACTCGTTG 60.135 52.381 0.00 0.00 44.89 4.10
700 749 0.606604 ACGATGCCCTTACTCGTTGT 59.393 50.000 0.00 0.00 42.52 3.32
701 750 0.999406 CGATGCCCTTACTCGTTGTG 59.001 55.000 0.00 0.00 0.00 3.33
702 751 1.671850 CGATGCCCTTACTCGTTGTGT 60.672 52.381 0.00 0.00 0.00 3.72
703 752 2.423577 GATGCCCTTACTCGTTGTGTT 58.576 47.619 0.00 0.00 0.00 3.32
704 753 2.335316 TGCCCTTACTCGTTGTGTTT 57.665 45.000 0.00 0.00 0.00 2.83
705 754 1.944024 TGCCCTTACTCGTTGTGTTTG 59.056 47.619 0.00 0.00 0.00 2.93
706 755 1.265905 GCCCTTACTCGTTGTGTTTGG 59.734 52.381 0.00 0.00 0.00 3.28
707 756 2.841215 CCCTTACTCGTTGTGTTTGGA 58.159 47.619 0.00 0.00 0.00 3.53
708 757 2.546789 CCCTTACTCGTTGTGTTTGGAC 59.453 50.000 0.00 0.00 0.00 4.02
709 758 3.199677 CCTTACTCGTTGTGTTTGGACA 58.800 45.455 0.00 0.00 0.00 4.02
726 775 3.706994 GACACGTCCATTTCTCGAAAG 57.293 47.619 0.00 0.00 33.32 2.62
727 776 3.057734 GACACGTCCATTTCTCGAAAGT 58.942 45.455 0.00 0.00 33.32 2.66
728 777 4.232221 GACACGTCCATTTCTCGAAAGTA 58.768 43.478 0.00 0.00 33.32 2.24
729 778 4.817517 ACACGTCCATTTCTCGAAAGTAT 58.182 39.130 0.00 0.00 33.32 2.12
730 779 5.235516 ACACGTCCATTTCTCGAAAGTATT 58.764 37.500 0.00 0.00 33.32 1.89
731 780 5.699458 ACACGTCCATTTCTCGAAAGTATTT 59.301 36.000 0.00 0.00 43.98 1.40
732 781 6.204108 ACACGTCCATTTCTCGAAAGTATTTT 59.796 34.615 0.00 0.00 39.27 1.82
733 782 6.736853 CACGTCCATTTCTCGAAAGTATTTTC 59.263 38.462 0.76 0.76 39.27 2.29
734 783 6.425721 ACGTCCATTTCTCGAAAGTATTTTCA 59.574 34.615 10.84 0.00 42.27 2.69
735 784 6.955963 CGTCCATTTCTCGAAAGTATTTTCAG 59.044 38.462 10.84 7.41 42.27 3.02
736 785 7.148639 CGTCCATTTCTCGAAAGTATTTTCAGA 60.149 37.037 10.84 9.22 42.27 3.27
737 786 7.958025 GTCCATTTCTCGAAAGTATTTTCAGAC 59.042 37.037 10.84 1.79 42.27 3.51
738 787 6.955963 CCATTTCTCGAAAGTATTTTCAGACG 59.044 38.462 10.84 0.00 42.27 4.18
739 788 6.462073 TTTCTCGAAAGTATTTTCAGACGG 57.538 37.500 10.84 0.00 42.27 4.79
740 789 5.381174 TCTCGAAAGTATTTTCAGACGGA 57.619 39.130 10.84 0.00 42.27 4.69
741 790 5.399858 TCTCGAAAGTATTTTCAGACGGAG 58.600 41.667 10.84 8.32 42.27 4.63
742 791 4.491676 TCGAAAGTATTTTCAGACGGAGG 58.508 43.478 10.84 0.00 42.27 4.30
743 792 3.617263 CGAAAGTATTTTCAGACGGAGGG 59.383 47.826 10.84 0.00 42.27 4.30
744 793 4.619863 CGAAAGTATTTTCAGACGGAGGGA 60.620 45.833 10.84 0.00 42.27 4.20
745 794 4.903045 AAGTATTTTCAGACGGAGGGAA 57.097 40.909 0.00 0.00 0.00 3.97
746 795 5.437191 AAGTATTTTCAGACGGAGGGAAT 57.563 39.130 0.00 0.00 0.00 3.01
747 796 5.437191 AGTATTTTCAGACGGAGGGAATT 57.563 39.130 0.00 0.00 0.00 2.17
748 797 5.816682 AGTATTTTCAGACGGAGGGAATTT 58.183 37.500 0.00 0.00 0.00 1.82
749 798 6.246163 AGTATTTTCAGACGGAGGGAATTTT 58.754 36.000 0.00 0.00 0.00 1.82
750 799 6.719829 AGTATTTTCAGACGGAGGGAATTTTT 59.280 34.615 0.00 0.00 0.00 1.94
775 824 4.625311 CGGGGATTTTTGTGCAAAATAGTC 59.375 41.667 10.39 9.12 39.69 2.59
776 825 4.625311 GGGGATTTTTGTGCAAAATAGTCG 59.375 41.667 10.39 0.00 39.69 4.18
794 843 1.024579 CGAATTCCCCACCTGAACCG 61.025 60.000 0.00 0.00 0.00 4.44
1031 1087 4.636435 CCCCTCGTTTGTGCCGGT 62.636 66.667 1.90 0.00 0.00 5.28
1073 1129 4.329545 GGAGCTGCCGTTGGACCA 62.330 66.667 0.00 0.00 0.00 4.02
1074 1130 2.045926 GAGCTGCCGTTGGACCAT 60.046 61.111 0.00 0.00 0.00 3.55
1075 1131 2.360350 AGCTGCCGTTGGACCATG 60.360 61.111 0.00 0.00 0.00 3.66
1076 1132 3.443045 GCTGCCGTTGGACCATGG 61.443 66.667 11.19 11.19 0.00 3.66
1077 1133 2.034066 CTGCCGTTGGACCATGGT 59.966 61.111 19.89 19.89 0.00 3.55
1078 1134 1.603455 CTGCCGTTGGACCATGGTT 60.603 57.895 20.85 2.15 0.00 3.67
1079 1135 1.152652 TGCCGTTGGACCATGGTTT 60.153 52.632 20.85 0.00 0.00 3.27
1080 1136 0.757188 TGCCGTTGGACCATGGTTTT 60.757 50.000 20.85 0.00 0.00 2.43
1081 1137 0.038618 GCCGTTGGACCATGGTTTTC 60.039 55.000 20.85 12.43 0.00 2.29
1082 1138 1.323412 CCGTTGGACCATGGTTTTCA 58.677 50.000 20.85 14.92 0.00 2.69
1083 1139 1.683917 CCGTTGGACCATGGTTTTCAA 59.316 47.619 20.85 19.63 0.00 2.69
1084 1140 2.298729 CCGTTGGACCATGGTTTTCAAT 59.701 45.455 20.85 0.00 0.00 2.57
1085 1141 3.244044 CCGTTGGACCATGGTTTTCAATT 60.244 43.478 20.85 0.00 0.00 2.32
1086 1142 4.376146 CGTTGGACCATGGTTTTCAATTT 58.624 39.130 20.85 0.00 0.00 1.82
1087 1143 4.447389 CGTTGGACCATGGTTTTCAATTTC 59.553 41.667 20.85 10.99 0.00 2.17
1088 1144 5.363939 GTTGGACCATGGTTTTCAATTTCA 58.636 37.500 20.85 0.00 0.00 2.69
1089 1145 5.212532 TGGACCATGGTTTTCAATTTCAG 57.787 39.130 20.85 0.00 0.00 3.02
1090 1146 4.653341 TGGACCATGGTTTTCAATTTCAGT 59.347 37.500 20.85 0.00 0.00 3.41
1091 1147 5.130145 TGGACCATGGTTTTCAATTTCAGTT 59.870 36.000 20.85 0.00 0.00 3.16
1092 1148 6.054941 GGACCATGGTTTTCAATTTCAGTTT 58.945 36.000 20.85 0.00 0.00 2.66
1093 1149 6.202762 GGACCATGGTTTTCAATTTCAGTTTC 59.797 38.462 20.85 0.00 0.00 2.78
1094 1150 6.648192 ACCATGGTTTTCAATTTCAGTTTCA 58.352 32.000 13.00 0.00 0.00 2.69
1095 1151 7.108847 ACCATGGTTTTCAATTTCAGTTTCAA 58.891 30.769 13.00 0.00 0.00 2.69
1096 1152 7.065683 ACCATGGTTTTCAATTTCAGTTTCAAC 59.934 33.333 13.00 0.00 0.00 3.18
1097 1153 7.065563 CCATGGTTTTCAATTTCAGTTTCAACA 59.934 33.333 2.57 0.00 0.00 3.33
1098 1154 7.969536 TGGTTTTCAATTTCAGTTTCAACAA 57.030 28.000 0.00 0.00 0.00 2.83
1099 1155 8.383318 TGGTTTTCAATTTCAGTTTCAACAAA 57.617 26.923 0.00 0.00 0.00 2.83
1100 1156 8.840321 TGGTTTTCAATTTCAGTTTCAACAAAA 58.160 25.926 0.00 0.00 0.00 2.44
1101 1157 9.838975 GGTTTTCAATTTCAGTTTCAACAAAAT 57.161 25.926 0.00 0.00 31.86 1.82
1107 1163 9.002080 CAATTTCAGTTTCAACAAAATTTCAGC 57.998 29.630 10.66 0.00 35.86 4.26
1108 1164 7.664082 TTTCAGTTTCAACAAAATTTCAGCA 57.336 28.000 0.00 0.00 0.00 4.41
1109 1165 6.645700 TCAGTTTCAACAAAATTTCAGCAC 57.354 33.333 0.00 0.00 0.00 4.40
1110 1166 5.580297 TCAGTTTCAACAAAATTTCAGCACC 59.420 36.000 0.00 0.00 0.00 5.01
1111 1167 5.350914 CAGTTTCAACAAAATTTCAGCACCA 59.649 36.000 0.00 0.00 0.00 4.17
1112 1168 5.936956 AGTTTCAACAAAATTTCAGCACCAA 59.063 32.000 0.00 0.00 0.00 3.67
1113 1169 5.793026 TTCAACAAAATTTCAGCACCAAC 57.207 34.783 0.00 0.00 0.00 3.77
1114 1170 5.083533 TCAACAAAATTTCAGCACCAACT 57.916 34.783 0.00 0.00 0.00 3.16
1115 1171 4.869297 TCAACAAAATTTCAGCACCAACTG 59.131 37.500 0.00 0.00 39.12 3.16
1116 1172 4.734398 ACAAAATTTCAGCACCAACTGA 57.266 36.364 0.00 0.00 44.84 3.41
1123 1179 3.213206 TCAGCACCAACTGAAATCACT 57.787 42.857 0.00 0.00 43.59 3.41
1124 1180 2.880268 TCAGCACCAACTGAAATCACTG 59.120 45.455 0.00 0.00 43.59 3.66
1125 1181 2.880268 CAGCACCAACTGAAATCACTGA 59.120 45.455 0.00 0.00 40.25 3.41
1126 1182 3.316029 CAGCACCAACTGAAATCACTGAA 59.684 43.478 0.00 0.00 40.25 3.02
1127 1183 3.953612 AGCACCAACTGAAATCACTGAAA 59.046 39.130 0.00 0.00 0.00 2.69
1128 1184 4.586001 AGCACCAACTGAAATCACTGAAAT 59.414 37.500 0.00 0.00 0.00 2.17
1129 1185 5.069516 AGCACCAACTGAAATCACTGAAATT 59.930 36.000 0.00 0.00 0.00 1.82
1130 1186 5.403466 GCACCAACTGAAATCACTGAAATTC 59.597 40.000 0.00 0.00 0.00 2.17
1131 1187 6.506147 CACCAACTGAAATCACTGAAATTCA 58.494 36.000 0.00 0.00 0.00 2.57
1164 1220 8.519492 TTAGTTATTTCAGTTTGCATTTCAGC 57.481 30.769 0.00 0.00 0.00 4.26
1165 1221 5.928264 AGTTATTTCAGTTTGCATTTCAGCC 59.072 36.000 0.00 0.00 0.00 4.85
1166 1222 3.815856 TTTCAGTTTGCATTTCAGCCA 57.184 38.095 0.00 0.00 0.00 4.75
1167 1223 3.815856 TTCAGTTTGCATTTCAGCCAA 57.184 38.095 0.00 0.00 0.00 4.52
1168 1224 3.815856 TCAGTTTGCATTTCAGCCAAA 57.184 38.095 0.00 0.00 0.00 3.28
1169 1225 4.134379 TCAGTTTGCATTTCAGCCAAAA 57.866 36.364 0.00 0.00 0.00 2.44
1170 1226 4.121317 TCAGTTTGCATTTCAGCCAAAAG 58.879 39.130 0.00 0.00 0.00 2.27
1171 1227 3.249080 CAGTTTGCATTTCAGCCAAAAGG 59.751 43.478 0.00 0.00 0.00 3.11
1172 1228 1.881591 TTGCATTTCAGCCAAAAGGC 58.118 45.000 10.18 10.18 44.03 4.35
1173 1229 0.035176 TGCATTTCAGCCAAAAGGCC 59.965 50.000 13.40 0.00 43.34 5.19
1174 1230 0.035176 GCATTTCAGCCAAAAGGCCA 59.965 50.000 5.01 0.00 39.37 5.36
1175 1231 1.542987 GCATTTCAGCCAAAAGGCCAA 60.543 47.619 5.01 0.00 39.37 4.52
1176 1232 2.848691 CATTTCAGCCAAAAGGCCAAA 58.151 42.857 5.01 3.52 35.12 3.28
1177 1233 3.212685 CATTTCAGCCAAAAGGCCAAAA 58.787 40.909 5.01 4.80 35.12 2.44
1178 1234 3.574354 TTTCAGCCAAAAGGCCAAAAT 57.426 38.095 5.01 0.00 35.12 1.82
1179 1235 4.696479 TTTCAGCCAAAAGGCCAAAATA 57.304 36.364 5.01 0.00 35.12 1.40
1180 1236 4.906747 TTCAGCCAAAAGGCCAAAATAT 57.093 36.364 5.01 0.00 35.12 1.28
1181 1237 4.906747 TCAGCCAAAAGGCCAAAATATT 57.093 36.364 5.01 0.00 35.12 1.28
1182 1238 4.831107 TCAGCCAAAAGGCCAAAATATTC 58.169 39.130 5.01 0.00 35.12 1.75
1183 1239 4.285517 TCAGCCAAAAGGCCAAAATATTCA 59.714 37.500 5.01 0.00 35.12 2.57
1184 1240 5.045724 TCAGCCAAAAGGCCAAAATATTCAT 60.046 36.000 5.01 0.00 35.12 2.57
1185 1241 5.648960 CAGCCAAAAGGCCAAAATATTCATT 59.351 36.000 5.01 0.00 35.12 2.57
1186 1242 6.151480 CAGCCAAAAGGCCAAAATATTCATTT 59.849 34.615 5.01 0.00 34.02 2.32
1187 1243 6.151480 AGCCAAAAGGCCAAAATATTCATTTG 59.849 34.615 5.01 0.67 37.48 2.32
1188 1244 6.150809 GCCAAAAGGCCAAAATATTCATTTGA 59.849 34.615 5.01 0.00 39.56 2.69
1189 1245 7.309073 GCCAAAAGGCCAAAATATTCATTTGAA 60.309 33.333 5.01 0.00 39.56 2.69
1190 1246 8.741841 CCAAAAGGCCAAAATATTCATTTGAAT 58.258 29.630 5.01 10.42 45.77 2.57
1262 1318 8.236586 TGATTTCATGTGTACTACTGAATTTGC 58.763 33.333 0.00 0.00 31.34 3.68
1263 1319 7.744087 TTTCATGTGTACTACTGAATTTGCT 57.256 32.000 0.00 0.00 31.34 3.91
1264 1320 6.726258 TCATGTGTACTACTGAATTTGCTG 57.274 37.500 0.00 0.00 0.00 4.41
1265 1321 6.463360 TCATGTGTACTACTGAATTTGCTGA 58.537 36.000 0.00 0.00 0.00 4.26
1266 1322 6.934083 TCATGTGTACTACTGAATTTGCTGAA 59.066 34.615 0.00 0.00 0.00 3.02
1267 1323 7.443879 TCATGTGTACTACTGAATTTGCTGAAA 59.556 33.333 0.00 0.00 0.00 2.69
1268 1324 7.744087 TGTGTACTACTGAATTTGCTGAAAT 57.256 32.000 0.00 0.00 32.87 2.17
1269 1325 8.840833 TGTGTACTACTGAATTTGCTGAAATA 57.159 30.769 0.00 0.00 31.18 1.40
1270 1326 9.448438 TGTGTACTACTGAATTTGCTGAAATAT 57.552 29.630 0.00 0.00 31.18 1.28
1277 1333 8.538409 ACTGAATTTGCTGAAATATTTTGACC 57.462 30.769 1.43 0.00 31.18 4.02
1278 1334 7.329226 ACTGAATTTGCTGAAATATTTTGACCG 59.671 33.333 1.43 0.00 31.18 4.79
1279 1335 7.374272 TGAATTTGCTGAAATATTTTGACCGA 58.626 30.769 1.43 0.00 31.18 4.69
1280 1336 7.869937 TGAATTTGCTGAAATATTTTGACCGAA 59.130 29.630 1.43 0.00 31.18 4.30
1281 1337 8.600449 AATTTGCTGAAATATTTTGACCGAAA 57.400 26.923 1.43 0.00 31.18 3.46
1282 1338 7.401484 TTTGCTGAAATATTTTGACCGAAAC 57.599 32.000 1.43 0.00 0.00 2.78
1283 1339 6.078202 TGCTGAAATATTTTGACCGAAACA 57.922 33.333 1.43 0.00 0.00 2.83
1284 1340 6.686630 TGCTGAAATATTTTGACCGAAACAT 58.313 32.000 1.43 0.00 0.00 2.71
1285 1341 7.821652 TGCTGAAATATTTTGACCGAAACATA 58.178 30.769 1.43 0.00 0.00 2.29
1286 1342 8.300286 TGCTGAAATATTTTGACCGAAACATAA 58.700 29.630 1.43 0.00 0.00 1.90
1287 1343 9.301153 GCTGAAATATTTTGACCGAAACATAAT 57.699 29.630 1.43 0.00 0.00 1.28
1296 1352 9.619316 TTTTGACCGAAACATAATATTTCAGTG 57.381 29.630 0.00 0.00 36.09 3.66
1297 1353 7.915293 TGACCGAAACATAATATTTCAGTGT 57.085 32.000 0.00 0.00 36.09 3.55
1298 1354 7.970384 TGACCGAAACATAATATTTCAGTGTC 58.030 34.615 0.00 0.00 36.09 3.67
1299 1355 7.822334 TGACCGAAACATAATATTTCAGTGTCT 59.178 33.333 0.00 0.00 36.09 3.41
1300 1356 9.309516 GACCGAAACATAATATTTCAGTGTCTA 57.690 33.333 0.00 0.00 36.09 2.59
1301 1357 9.095065 ACCGAAACATAATATTTCAGTGTCTAC 57.905 33.333 0.00 0.00 36.09 2.59
1302 1358 9.314321 CCGAAACATAATATTTCAGTGTCTACT 57.686 33.333 0.00 0.00 36.09 2.57
1617 1702 1.269998 CGACCACGACTTTCTCCTCTT 59.730 52.381 0.00 0.00 42.66 2.85
1702 1828 4.683781 TCGTTTTGATTTGTTAGGCATTGC 59.316 37.500 0.00 0.00 0.00 3.56
1719 1845 5.207768 GCATTGCCTATATGTTCTGTTTCG 58.792 41.667 0.00 0.00 0.00 3.46
1761 1905 2.422597 TGTGTACCTTTCATTGCGGAG 58.577 47.619 0.00 0.00 0.00 4.63
1777 1922 7.389330 TCATTGCGGAGAAGTTCTGTAAATTTA 59.611 33.333 10.90 0.00 39.71 1.40
1829 2214 4.018490 TGTGCTGTGCTATGGAATCAAAT 58.982 39.130 0.00 0.00 0.00 2.32
1862 2410 3.940209 TGTGGTTTCTGATTTGATGCC 57.060 42.857 0.00 0.00 0.00 4.40
1863 2411 2.228582 TGTGGTTTCTGATTTGATGCCG 59.771 45.455 0.00 0.00 0.00 5.69
1865 2413 2.487762 TGGTTTCTGATTTGATGCCGAC 59.512 45.455 0.00 0.00 0.00 4.79
1868 2416 1.372582 TCTGATTTGATGCCGACAGC 58.627 50.000 0.00 0.00 44.14 4.40
1881 2430 2.998668 CGACAGCGGCTTTTAGTATG 57.001 50.000 0.00 0.00 0.00 2.39
1882 2431 2.268298 CGACAGCGGCTTTTAGTATGT 58.732 47.619 0.00 0.00 0.00 2.29
1884 2434 2.268298 ACAGCGGCTTTTAGTATGTCG 58.732 47.619 0.00 0.00 32.69 4.35
1891 2441 6.758593 CGGCTTTTAGTATGTCGCTTTATA 57.241 37.500 0.00 0.00 0.00 0.98
2008 2715 4.946478 AGCGCTAGAGAAAACCTATCAT 57.054 40.909 8.99 0.00 0.00 2.45
2022 2733 5.636903 ACCTATCATTGTGCATTACTCCT 57.363 39.130 0.00 0.00 0.00 3.69
2208 3267 5.643379 TGGCTTGCCAACTAAGAATTAAG 57.357 39.130 12.40 0.00 0.00 1.85
2251 3310 2.040012 TGGTTTGTTAATACAGCGGGGA 59.960 45.455 0.00 0.00 35.28 4.81
2252 3311 3.083293 GGTTTGTTAATACAGCGGGGAA 58.917 45.455 0.00 0.00 35.28 3.97
2342 3406 4.015872 TCCAGTGAAACAGTCCCATTAC 57.984 45.455 0.00 0.00 41.43 1.89
2553 3637 6.136857 AGTATGTACCTGTGTCCTATGATGT 58.863 40.000 0.00 0.00 0.00 3.06
2561 3651 4.129380 TGTGTCCTATGATGTTATGCAGC 58.871 43.478 0.00 0.00 0.00 5.25
2729 3853 3.963428 GGCACCTTCTCTTAAGAGTCA 57.037 47.619 27.59 16.67 42.60 3.41
2757 3884 7.571983 CGCCTCATTTCTCGCTATAATTTTGAT 60.572 37.037 0.00 0.00 0.00 2.57
2879 4012 1.808531 GCATGCCCACAACTGAAGCA 61.809 55.000 6.36 0.00 37.94 3.91
2920 4053 6.348540 GGACGTGTTCTATGATTTTGAAGCTT 60.349 38.462 0.00 0.00 0.00 3.74
2960 4093 1.125633 GAAGCCATGGGGATTGCAAT 58.874 50.000 12.83 12.83 44.43 3.56
3183 4316 0.881118 TGAGAGGGCAATTTGTTCGC 59.119 50.000 0.00 0.00 0.00 4.70
3336 4481 2.743664 TCGGCAAACATCTGACAGAATG 59.256 45.455 9.70 10.64 46.00 2.67
3388 4533 5.450137 GGTGATCTTTCTGCCATTGAGAATG 60.450 44.000 0.00 0.00 38.63 2.67
3494 4641 2.163010 GCACAACATGGAGAACAGGATG 59.837 50.000 0.00 0.00 46.00 3.51
3580 4727 4.232221 GTCCAAGAAAATGCAGTGACATG 58.768 43.478 0.00 0.00 0.00 3.21
3746 4893 6.625873 ACTGAAGAAAACAAAGTGAGGATC 57.374 37.500 0.00 0.00 0.00 3.36
3749 4896 3.412386 AGAAAACAAAGTGAGGATCGGG 58.588 45.455 0.00 0.00 38.61 5.14
3900 5047 1.508632 TGCGGTGAAGCAACTAGTTC 58.491 50.000 4.77 1.12 45.06 3.01
3905 5052 3.614150 CGGTGAAGCAACTAGTTCAGCTA 60.614 47.826 17.93 4.13 45.05 3.32
3926 5073 5.513788 GCTAATGGATCCTGCTCTTGGAATA 60.514 44.000 14.23 0.00 37.13 1.75
3931 5078 1.209504 TCCTGCTCTTGGAATAACCGG 59.790 52.381 0.00 0.00 42.61 5.28
3941 5088 1.544246 GGAATAACCGGCAAAGCTGTT 59.456 47.619 0.00 0.00 32.22 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.804544 CTGCCTACGAAATTCGCGGA 60.805 55.000 22.63 0.00 45.12 5.54
1 2 0.804544 TCTGCCTACGAAATTCGCGG 60.805 55.000 15.90 16.32 45.12 6.46
2 3 0.996462 TTCTGCCTACGAAATTCGCG 59.004 50.000 15.90 0.00 45.12 5.87
3 4 1.267582 GCTTCTGCCTACGAAATTCGC 60.268 52.381 15.90 0.00 45.12 4.70
4 5 1.999735 TGCTTCTGCCTACGAAATTCG 59.000 47.619 14.35 14.35 41.56 3.34
5 6 4.159120 GTTTGCTTCTGCCTACGAAATTC 58.841 43.478 0.00 0.00 38.71 2.17
6 7 3.568007 TGTTTGCTTCTGCCTACGAAATT 59.432 39.130 0.00 0.00 38.71 1.82
7 8 3.146066 TGTTTGCTTCTGCCTACGAAAT 58.854 40.909 0.00 0.00 38.71 2.17
8 9 2.548057 CTGTTTGCTTCTGCCTACGAAA 59.452 45.455 0.00 0.00 38.71 3.46
9 10 2.143122 CTGTTTGCTTCTGCCTACGAA 58.857 47.619 0.00 0.00 38.71 3.85
10 11 1.608025 CCTGTTTGCTTCTGCCTACGA 60.608 52.381 0.00 0.00 38.71 3.43
11 12 0.798776 CCTGTTTGCTTCTGCCTACG 59.201 55.000 0.00 0.00 38.71 3.51
12 13 2.079925 CTCCTGTTTGCTTCTGCCTAC 58.920 52.381 0.00 0.00 38.71 3.18
13 14 1.003580 CCTCCTGTTTGCTTCTGCCTA 59.996 52.381 0.00 0.00 38.71 3.93
14 15 0.251077 CCTCCTGTTTGCTTCTGCCT 60.251 55.000 0.00 0.00 38.71 4.75
15 16 1.871126 GCCTCCTGTTTGCTTCTGCC 61.871 60.000 0.00 0.00 38.71 4.85
16 17 1.174712 TGCCTCCTGTTTGCTTCTGC 61.175 55.000 0.00 0.00 40.20 4.26
17 18 1.321474 TTGCCTCCTGTTTGCTTCTG 58.679 50.000 0.00 0.00 0.00 3.02
18 19 2.071778 TTTGCCTCCTGTTTGCTTCT 57.928 45.000 0.00 0.00 0.00 2.85
19 20 2.747436 CTTTTGCCTCCTGTTTGCTTC 58.253 47.619 0.00 0.00 0.00 3.86
20 21 1.202568 GCTTTTGCCTCCTGTTTGCTT 60.203 47.619 0.00 0.00 40.15 3.91
21 22 0.390492 GCTTTTGCCTCCTGTTTGCT 59.610 50.000 0.00 0.00 40.15 3.91
22 23 0.104671 TGCTTTTGCCTCCTGTTTGC 59.895 50.000 0.00 0.00 46.87 3.68
23 24 1.136695 TGTGCTTTTGCCTCCTGTTTG 59.863 47.619 0.00 0.00 46.87 2.93
24 25 1.484038 TGTGCTTTTGCCTCCTGTTT 58.516 45.000 0.00 0.00 46.87 2.83
25 26 1.708341 ATGTGCTTTTGCCTCCTGTT 58.292 45.000 0.00 0.00 46.87 3.16
26 27 1.342174 CAATGTGCTTTTGCCTCCTGT 59.658 47.619 0.00 0.00 46.87 4.00
27 28 1.938016 GCAATGTGCTTTTGCCTCCTG 60.938 52.381 7.36 0.00 46.87 3.86
28 29 0.319405 GCAATGTGCTTTTGCCTCCT 59.681 50.000 7.36 0.00 46.87 3.69
29 30 1.010419 CGCAATGTGCTTTTGCCTCC 61.010 55.000 11.45 0.00 45.19 4.30
30 31 1.620413 GCGCAATGTGCTTTTGCCTC 61.620 55.000 12.00 3.09 45.19 4.70
31 32 1.665599 GCGCAATGTGCTTTTGCCT 60.666 52.632 12.00 0.00 45.19 4.75
32 33 1.293267 ATGCGCAATGTGCTTTTGCC 61.293 50.000 17.11 0.00 45.19 4.52
33 34 0.179235 CATGCGCAATGTGCTTTTGC 60.179 50.000 17.11 2.92 42.25 3.68
34 35 0.440758 CCATGCGCAATGTGCTTTTG 59.559 50.000 17.11 13.62 42.25 2.44
35 36 1.293267 GCCATGCGCAATGTGCTTTT 61.293 50.000 17.11 2.15 42.25 2.27
36 37 1.738830 GCCATGCGCAATGTGCTTT 60.739 52.632 17.11 4.71 42.25 3.51
37 38 2.125832 GCCATGCGCAATGTGCTT 60.126 55.556 17.11 10.87 42.25 3.91
47 48 3.350909 ATGCACTTGCTGCCATGCG 62.351 57.895 13.04 0.00 46.51 4.73
48 49 1.809619 CATGCACTTGCTGCCATGC 60.810 57.895 11.55 11.55 46.51 4.06
49 50 0.245266 TTCATGCACTTGCTGCCATG 59.755 50.000 8.84 8.84 46.51 3.66
50 51 0.970640 TTTCATGCACTTGCTGCCAT 59.029 45.000 2.33 0.00 46.51 4.40
82 83 1.135024 CACAGGGCGCAATATGCTTTT 60.135 47.619 10.83 0.00 42.25 2.27
100 101 6.578545 GTGTTGTTGAATGATGTACATGTCAC 59.421 38.462 14.43 8.97 39.39 3.67
138 139 0.753262 GGTGACGCTGGTCTGGATAT 59.247 55.000 0.00 0.00 43.79 1.63
181 220 1.633774 ATGACCACCTTGTCTCGAGT 58.366 50.000 13.13 0.00 36.21 4.18
188 227 1.795170 GCGCACAATGACCACCTTGT 61.795 55.000 0.30 0.00 35.80 3.16
197 236 3.004315 TCATACTCTATCGCGCACAATGA 59.996 43.478 8.75 0.00 0.00 2.57
215 254 6.769512 AGGAAGCAGAACTTACAAACTCATA 58.230 36.000 0.00 0.00 42.32 2.15
217 256 5.036117 AGGAAGCAGAACTTACAAACTCA 57.964 39.130 0.00 0.00 42.32 3.41
221 260 4.275936 GCAAGAGGAAGCAGAACTTACAAA 59.724 41.667 0.00 0.00 42.32 2.83
231 271 2.181954 AGTTGAGCAAGAGGAAGCAG 57.818 50.000 0.00 0.00 0.00 4.24
314 357 2.423088 CGGTCCTCTGTCCTATGGTACT 60.423 54.545 0.00 0.00 0.00 2.73
333 376 1.076533 GTGTGCACGTAGATGGTCGG 61.077 60.000 13.13 0.00 0.00 4.79
347 390 1.308047 TCATCCAACAGTGTGTGTGC 58.692 50.000 0.00 0.00 40.26 4.57
348 391 2.287188 GCTTCATCCAACAGTGTGTGTG 60.287 50.000 0.00 0.00 40.26 3.82
375 418 1.549170 GTCGTTCCACACATACTCCCT 59.451 52.381 0.00 0.00 0.00 4.20
403 446 8.023128 CGGATGTCTAACAAGTTTTTCATCAAT 58.977 33.333 16.99 0.00 34.17 2.57
421 465 3.210232 TCGACTAGATTCCGGATGTCT 57.790 47.619 19.94 19.94 0.00 3.41
449 495 8.687824 ACAAATTAAGCATAGTACAACAATGC 57.312 30.769 12.08 12.08 45.02 3.56
464 510 9.778993 CATCCATACATAGCATACAAATTAAGC 57.221 33.333 0.00 0.00 0.00 3.09
474 521 5.473162 GCACAAACCATCCATACATAGCATA 59.527 40.000 0.00 0.00 0.00 3.14
520 567 6.884096 TTCATGCAAAACGGCTTATATTTG 57.116 33.333 0.00 0.00 36.19 2.32
585 632 2.437002 GCCGCCATCCAACCGTAA 60.437 61.111 0.00 0.00 0.00 3.18
635 682 0.462375 CCCACATCCGTCCACGAATA 59.538 55.000 0.00 0.00 43.02 1.75
636 683 1.220749 CCCACATCCGTCCACGAAT 59.779 57.895 0.00 0.00 43.02 3.34
638 685 2.283316 TCCCACATCCGTCCACGA 60.283 61.111 0.00 0.00 43.02 4.35
682 731 0.999406 CACAACGAGTAAGGGCATCG 59.001 55.000 0.00 0.00 42.04 3.84
684 733 2.552315 CAAACACAACGAGTAAGGGCAT 59.448 45.455 0.00 0.00 0.00 4.40
685 734 1.944024 CAAACACAACGAGTAAGGGCA 59.056 47.619 0.00 0.00 0.00 5.36
686 735 1.265905 CCAAACACAACGAGTAAGGGC 59.734 52.381 0.00 0.00 0.00 5.19
687 736 2.546789 GTCCAAACACAACGAGTAAGGG 59.453 50.000 0.00 0.00 0.00 3.95
688 737 3.199677 TGTCCAAACACAACGAGTAAGG 58.800 45.455 0.00 0.00 0.00 2.69
706 755 3.057734 ACTTTCGAGAAATGGACGTGTC 58.942 45.455 0.00 0.00 0.00 3.67
707 756 3.107642 ACTTTCGAGAAATGGACGTGT 57.892 42.857 0.00 0.00 0.00 4.49
708 757 5.779806 AATACTTTCGAGAAATGGACGTG 57.220 39.130 0.00 0.00 0.00 4.49
709 758 6.425721 TGAAAATACTTTCGAGAAATGGACGT 59.574 34.615 0.00 0.00 43.40 4.34
710 759 6.827641 TGAAAATACTTTCGAGAAATGGACG 58.172 36.000 0.00 0.00 43.40 4.79
711 760 7.958025 GTCTGAAAATACTTTCGAGAAATGGAC 59.042 37.037 0.00 0.00 43.40 4.02
712 761 7.148639 CGTCTGAAAATACTTTCGAGAAATGGA 60.149 37.037 0.00 0.00 43.40 3.41
713 762 6.955963 CGTCTGAAAATACTTTCGAGAAATGG 59.044 38.462 0.00 0.00 43.40 3.16
714 763 6.955963 CCGTCTGAAAATACTTTCGAGAAATG 59.044 38.462 0.00 0.00 43.40 2.32
715 764 6.872020 TCCGTCTGAAAATACTTTCGAGAAAT 59.128 34.615 0.00 0.00 43.40 2.17
716 765 6.218019 TCCGTCTGAAAATACTTTCGAGAAA 58.782 36.000 0.00 0.00 43.40 2.52
717 766 5.775686 TCCGTCTGAAAATACTTTCGAGAA 58.224 37.500 0.00 0.00 43.40 2.87
718 767 5.381174 TCCGTCTGAAAATACTTTCGAGA 57.619 39.130 0.00 0.00 43.40 4.04
719 768 4.563184 CCTCCGTCTGAAAATACTTTCGAG 59.437 45.833 0.00 0.00 43.40 4.04
720 769 4.491676 CCTCCGTCTGAAAATACTTTCGA 58.508 43.478 0.00 0.00 43.40 3.71
721 770 3.617263 CCCTCCGTCTGAAAATACTTTCG 59.383 47.826 0.00 0.00 43.40 3.46
722 771 4.828829 TCCCTCCGTCTGAAAATACTTTC 58.171 43.478 0.00 0.00 41.25 2.62
723 772 4.903045 TCCCTCCGTCTGAAAATACTTT 57.097 40.909 0.00 0.00 0.00 2.66
724 773 4.903045 TTCCCTCCGTCTGAAAATACTT 57.097 40.909 0.00 0.00 0.00 2.24
725 774 5.437191 AATTCCCTCCGTCTGAAAATACT 57.563 39.130 0.00 0.00 0.00 2.12
726 775 6.510879 AAAATTCCCTCCGTCTGAAAATAC 57.489 37.500 0.00 0.00 0.00 1.89
747 796 3.543680 TGCACAAAAATCCCCGAAAAA 57.456 38.095 0.00 0.00 0.00 1.94
748 797 3.543680 TTGCACAAAAATCCCCGAAAA 57.456 38.095 0.00 0.00 0.00 2.29
749 798 3.543680 TTTGCACAAAAATCCCCGAAA 57.456 38.095 0.00 0.00 0.00 3.46
750 799 3.543680 TTTTGCACAAAAATCCCCGAA 57.456 38.095 6.09 0.00 37.35 4.30
751 800 3.760580 ATTTTGCACAAAAATCCCCGA 57.239 38.095 12.17 0.00 43.57 5.14
752 801 4.565022 ACTATTTTGCACAAAAATCCCCG 58.435 39.130 12.17 1.76 43.57 5.73
753 802 4.625311 CGACTATTTTGCACAAAAATCCCC 59.375 41.667 12.17 1.95 43.57 4.81
754 803 5.465935 TCGACTATTTTGCACAAAAATCCC 58.534 37.500 12.17 3.12 43.57 3.85
755 804 7.581011 ATTCGACTATTTTGCACAAAAATCC 57.419 32.000 12.17 2.82 43.57 3.01
775 824 1.024579 CGGTTCAGGTGGGGAATTCG 61.025 60.000 0.00 0.00 0.00 3.34
776 825 0.679960 CCGGTTCAGGTGGGGAATTC 60.680 60.000 0.00 0.00 0.00 2.17
794 843 1.078356 GGGAAAGGAGCGAGGAACC 60.078 63.158 0.00 0.00 0.00 3.62
1031 1087 1.648568 AGTTCCTCATCTCCTCCTCCA 59.351 52.381 0.00 0.00 0.00 3.86
1066 1122 5.130145 ACTGAAATTGAAAACCATGGTCCAA 59.870 36.000 20.07 21.16 0.00 3.53
1067 1123 4.653341 ACTGAAATTGAAAACCATGGTCCA 59.347 37.500 20.07 13.79 0.00 4.02
1068 1124 5.213891 ACTGAAATTGAAAACCATGGTCC 57.786 39.130 20.07 11.20 0.00 4.46
1069 1125 6.760770 TGAAACTGAAATTGAAAACCATGGTC 59.239 34.615 20.07 6.47 0.00 4.02
1070 1126 6.648192 TGAAACTGAAATTGAAAACCATGGT 58.352 32.000 13.00 13.00 0.00 3.55
1071 1127 7.065563 TGTTGAAACTGAAATTGAAAACCATGG 59.934 33.333 11.19 11.19 0.00 3.66
1072 1128 7.972527 TGTTGAAACTGAAATTGAAAACCATG 58.027 30.769 0.00 0.00 0.00 3.66
1073 1129 8.558973 TTGTTGAAACTGAAATTGAAAACCAT 57.441 26.923 0.00 0.00 0.00 3.55
1074 1130 7.969536 TTGTTGAAACTGAAATTGAAAACCA 57.030 28.000 0.00 0.00 0.00 3.67
1075 1131 9.838975 ATTTTGTTGAAACTGAAATTGAAAACC 57.161 25.926 0.00 0.00 0.00 3.27
1081 1137 9.002080 GCTGAAATTTTGTTGAAACTGAAATTG 57.998 29.630 15.20 8.85 36.47 2.32
1082 1138 8.728833 TGCTGAAATTTTGTTGAAACTGAAATT 58.271 25.926 11.56 11.56 37.16 1.82
1083 1139 8.177013 GTGCTGAAATTTTGTTGAAACTGAAAT 58.823 29.630 0.00 0.00 31.55 2.17
1084 1140 7.360776 GGTGCTGAAATTTTGTTGAAACTGAAA 60.361 33.333 0.00 0.00 0.00 2.69
1085 1141 6.091986 GGTGCTGAAATTTTGTTGAAACTGAA 59.908 34.615 0.00 0.00 0.00 3.02
1086 1142 5.580297 GGTGCTGAAATTTTGTTGAAACTGA 59.420 36.000 0.00 0.00 0.00 3.41
1087 1143 5.350914 TGGTGCTGAAATTTTGTTGAAACTG 59.649 36.000 0.00 0.00 0.00 3.16
1088 1144 5.486526 TGGTGCTGAAATTTTGTTGAAACT 58.513 33.333 0.00 0.00 0.00 2.66
1089 1145 5.793026 TGGTGCTGAAATTTTGTTGAAAC 57.207 34.783 0.00 0.00 0.00 2.78
1090 1146 5.936956 AGTTGGTGCTGAAATTTTGTTGAAA 59.063 32.000 0.00 0.00 0.00 2.69
1091 1147 5.350914 CAGTTGGTGCTGAAATTTTGTTGAA 59.649 36.000 0.00 0.00 38.70 2.69
1092 1148 4.869297 CAGTTGGTGCTGAAATTTTGTTGA 59.131 37.500 0.00 0.00 38.70 3.18
1093 1149 4.869297 TCAGTTGGTGCTGAAATTTTGTTG 59.131 37.500 0.00 0.00 41.93 3.33
1094 1150 5.083533 TCAGTTGGTGCTGAAATTTTGTT 57.916 34.783 0.00 0.00 41.93 2.83
1095 1151 4.734398 TCAGTTGGTGCTGAAATTTTGT 57.266 36.364 0.00 0.00 41.93 2.83
1103 1159 2.880268 CAGTGATTTCAGTTGGTGCTGA 59.120 45.455 0.00 0.00 43.03 4.26
1104 1160 2.880268 TCAGTGATTTCAGTTGGTGCTG 59.120 45.455 0.00 0.00 37.81 4.41
1105 1161 3.213206 TCAGTGATTTCAGTTGGTGCT 57.787 42.857 0.00 0.00 0.00 4.40
1106 1162 3.988379 TTCAGTGATTTCAGTTGGTGC 57.012 42.857 0.00 0.00 0.00 5.01
1107 1163 6.506147 TGAATTTCAGTGATTTCAGTTGGTG 58.494 36.000 12.59 0.00 0.00 4.17
1108 1164 6.713762 TGAATTTCAGTGATTTCAGTTGGT 57.286 33.333 12.59 0.00 0.00 3.67
1138 1194 8.977505 GCTGAAATGCAAACTGAAATAACTAAA 58.022 29.630 0.00 0.00 0.00 1.85
1139 1195 7.598493 GGCTGAAATGCAAACTGAAATAACTAA 59.402 33.333 0.00 0.00 34.04 2.24
1140 1196 7.090173 GGCTGAAATGCAAACTGAAATAACTA 58.910 34.615 0.00 0.00 34.04 2.24
1141 1197 5.928264 GGCTGAAATGCAAACTGAAATAACT 59.072 36.000 0.00 0.00 34.04 2.24
1142 1198 5.695816 TGGCTGAAATGCAAACTGAAATAAC 59.304 36.000 0.00 0.00 34.04 1.89
1143 1199 5.851720 TGGCTGAAATGCAAACTGAAATAA 58.148 33.333 0.00 0.00 34.04 1.40
1144 1200 5.465532 TGGCTGAAATGCAAACTGAAATA 57.534 34.783 0.00 0.00 34.04 1.40
1145 1201 4.339872 TGGCTGAAATGCAAACTGAAAT 57.660 36.364 0.00 0.00 34.04 2.17
1146 1202 3.815856 TGGCTGAAATGCAAACTGAAA 57.184 38.095 0.00 0.00 34.04 2.69
1147 1203 3.815856 TTGGCTGAAATGCAAACTGAA 57.184 38.095 0.00 0.00 34.04 3.02
1148 1204 3.815856 TTTGGCTGAAATGCAAACTGA 57.184 38.095 0.00 0.00 34.04 3.41
1149 1205 3.249080 CCTTTTGGCTGAAATGCAAACTG 59.751 43.478 0.00 0.00 34.04 3.16
1150 1206 3.469739 CCTTTTGGCTGAAATGCAAACT 58.530 40.909 0.00 0.00 34.04 2.66
1151 1207 3.883631 CCTTTTGGCTGAAATGCAAAC 57.116 42.857 0.00 0.00 34.04 2.93
1164 1220 7.684937 TCAAATGAATATTTTGGCCTTTTGG 57.315 32.000 3.32 0.00 37.22 3.28
1236 1292 8.236586 GCAAATTCAGTAGTACACATGAAATCA 58.763 33.333 0.00 0.00 35.47 2.57
1237 1293 8.454106 AGCAAATTCAGTAGTACACATGAAATC 58.546 33.333 0.00 0.00 35.47 2.17
1238 1294 8.239314 CAGCAAATTCAGTAGTACACATGAAAT 58.761 33.333 0.00 0.00 35.47 2.17
1239 1295 7.443879 TCAGCAAATTCAGTAGTACACATGAAA 59.556 33.333 0.00 0.00 35.47 2.69
1240 1296 6.934083 TCAGCAAATTCAGTAGTACACATGAA 59.066 34.615 0.00 4.62 36.22 2.57
1241 1297 6.463360 TCAGCAAATTCAGTAGTACACATGA 58.537 36.000 0.00 0.00 0.00 3.07
1242 1298 6.726258 TCAGCAAATTCAGTAGTACACATG 57.274 37.500 2.52 0.00 0.00 3.21
1243 1299 7.744087 TTTCAGCAAATTCAGTAGTACACAT 57.256 32.000 2.52 0.00 0.00 3.21
1244 1300 7.744087 ATTTCAGCAAATTCAGTAGTACACA 57.256 32.000 2.52 0.00 0.00 3.72
1251 1307 9.638239 GGTCAAAATATTTCAGCAAATTCAGTA 57.362 29.630 0.10 0.00 33.95 2.74
1252 1308 7.329226 CGGTCAAAATATTTCAGCAAATTCAGT 59.671 33.333 0.10 0.00 33.95 3.41
1253 1309 7.541783 TCGGTCAAAATATTTCAGCAAATTCAG 59.458 33.333 0.10 0.00 33.95 3.02
1254 1310 7.374272 TCGGTCAAAATATTTCAGCAAATTCA 58.626 30.769 0.10 0.00 33.95 2.57
1255 1311 7.810766 TCGGTCAAAATATTTCAGCAAATTC 57.189 32.000 0.10 0.00 33.95 2.17
1256 1312 8.495148 GTTTCGGTCAAAATATTTCAGCAAATT 58.505 29.630 0.10 0.00 33.95 1.82
1257 1313 7.655328 TGTTTCGGTCAAAATATTTCAGCAAAT 59.345 29.630 0.10 0.00 36.18 2.32
1258 1314 6.980978 TGTTTCGGTCAAAATATTTCAGCAAA 59.019 30.769 0.10 3.18 0.00 3.68
1259 1315 6.507900 TGTTTCGGTCAAAATATTTCAGCAA 58.492 32.000 0.10 0.00 0.00 3.91
1260 1316 6.078202 TGTTTCGGTCAAAATATTTCAGCA 57.922 33.333 0.10 0.00 0.00 4.41
1261 1317 8.682128 TTATGTTTCGGTCAAAATATTTCAGC 57.318 30.769 0.10 0.68 0.00 4.26
1270 1326 9.619316 CACTGAAATATTATGTTTCGGTCAAAA 57.381 29.630 20.78 0.00 46.73 2.44
1271 1327 8.788806 ACACTGAAATATTATGTTTCGGTCAAA 58.211 29.630 20.78 0.00 46.73 2.69
1272 1328 8.330466 ACACTGAAATATTATGTTTCGGTCAA 57.670 30.769 20.78 0.17 46.73 3.18
1273 1329 7.822334 AGACACTGAAATATTATGTTTCGGTCA 59.178 33.333 20.78 1.01 46.73 4.02
1274 1330 8.197988 AGACACTGAAATATTATGTTTCGGTC 57.802 34.615 20.78 18.74 46.73 4.79
1276 1332 9.314321 AGTAGACACTGAAATATTATGTTTCGG 57.686 33.333 17.71 17.71 43.98 4.30
1311 1367 9.897744 GATTTCACTGTAATTCACTGAATTTCA 57.102 29.630 19.72 18.68 41.64 2.69
1314 1370 9.288576 TGAGATTTCACTGTAATTCACTGAATT 57.711 29.630 18.76 18.76 43.49 2.17
1315 1371 8.853077 TGAGATTTCACTGTAATTCACTGAAT 57.147 30.769 0.00 0.00 32.17 2.57
1339 1395 4.969121 AACGCATGGTTTTCACTTTCAGTG 60.969 41.667 0.00 0.00 40.89 3.66
1340 1396 2.687935 ACGCATGGTTTTCACTTTCAGT 59.312 40.909 0.00 0.00 0.00 3.41
1341 1397 3.354089 ACGCATGGTTTTCACTTTCAG 57.646 42.857 0.00 0.00 0.00 3.02
1342 1398 3.443037 CAACGCATGGTTTTCACTTTCA 58.557 40.909 0.00 0.00 36.49 2.69
1343 1399 2.794350 CCAACGCATGGTTTTCACTTTC 59.206 45.455 0.00 0.00 44.85 2.62
1344 1400 2.820330 CCAACGCATGGTTTTCACTTT 58.180 42.857 0.00 0.00 44.85 2.66
1345 1401 2.507339 CCAACGCATGGTTTTCACTT 57.493 45.000 0.00 0.00 44.85 3.16
1617 1702 0.539669 TTCTCACTGGTCAGCGAGGA 60.540 55.000 13.87 4.84 37.98 3.71
1702 1828 5.424757 TGGAACCGAAACAGAACATATAGG 58.575 41.667 0.00 0.00 0.00 2.57
1719 1845 7.093509 ACACATAAATTGTAAGGGATTGGAACC 60.094 37.037 0.00 0.00 36.57 3.62
1777 1922 6.855763 TTGCATGATTCCTACCAAAGAAAT 57.144 33.333 0.00 0.00 0.00 2.17
1829 2214 7.815840 TCAGAAACCACATAATTTTCAGTCA 57.184 32.000 0.00 0.00 32.62 3.41
1862 2410 2.268298 ACATACTAAAAGCCGCTGTCG 58.732 47.619 0.00 0.00 0.00 4.35
1863 2411 2.281762 CGACATACTAAAAGCCGCTGTC 59.718 50.000 0.00 0.00 0.00 3.51
1865 2413 1.004927 GCGACATACTAAAAGCCGCTG 60.005 52.381 0.00 0.00 38.36 5.18
1868 2416 5.652744 ATAAAGCGACATACTAAAAGCCG 57.347 39.130 0.00 0.00 0.00 5.52
1870 2418 9.931210 AACATTATAAAGCGACATACTAAAAGC 57.069 29.630 0.00 0.00 0.00 3.51
2008 2715 4.359434 TGGTGTAAGGAGTAATGCACAA 57.641 40.909 0.00 0.00 34.35 3.33
2022 2733 4.568072 ACATGAAGGCAGTATGGTGTAA 57.432 40.909 0.00 0.00 35.86 2.41
2093 3011 7.123098 TGTCAGAATCATCCAATTACTGCAAAT 59.877 33.333 0.00 0.00 0.00 2.32
2100 3018 9.512435 CTTGAAATGTCAGAATCATCCAATTAC 57.488 33.333 0.00 0.00 34.49 1.89
2208 3267 5.406780 CCAATATATGAAGAACTCGGCTGAC 59.593 44.000 0.00 0.00 0.00 3.51
2251 3310 9.508642 TTTCAAACCAAACCAAAGAATACTTTT 57.491 25.926 0.00 0.00 43.41 2.27
2252 3311 8.941977 GTTTCAAACCAAACCAAAGAATACTTT 58.058 29.630 0.00 0.00 45.75 2.66
2342 3406 5.520376 AACTCAAAGTCTCAAACCATTGG 57.480 39.130 0.00 0.00 37.15 3.16
2387 3452 5.587443 TCCAGCATATGAAATCAGTTGAGTG 59.413 40.000 6.97 0.00 0.00 3.51
2517 3586 7.036220 CACAGGTACATACTTAAAGAGGTCTG 58.964 42.308 0.00 0.00 0.00 3.51
2587 3677 0.598680 GACAGACTTGCAGAGCACGT 60.599 55.000 0.51 0.51 43.48 4.49
2729 3853 4.521130 TTATAGCGAGAAATGAGGCGAT 57.479 40.909 0.00 0.00 0.00 4.58
2757 3884 7.718334 TTTCACTATCATCTCCTTGAGTACA 57.282 36.000 0.00 0.00 0.00 2.90
2763 3896 6.599445 AGGGAATTTCACTATCATCTCCTTG 58.401 40.000 0.00 0.00 0.00 3.61
2879 4012 4.281182 ACACGTCCTTATTCAGTCTGAAGT 59.719 41.667 19.64 8.22 40.05 3.01
2920 4053 0.612744 TCATCCCTGTCATTGTCGCA 59.387 50.000 0.00 0.00 0.00 5.10
3149 4282 3.508793 CCCTCTCATGCAAACATCACTTT 59.491 43.478 0.00 0.00 32.87 2.66
3183 4316 1.308069 CCCTGTCAGATGTTTGCCGG 61.308 60.000 0.00 0.00 0.00 6.13
3336 4481 7.197901 AGAATCCATGGATGAGGAAGATATC 57.802 40.000 27.97 16.36 37.48 1.63
3388 4533 0.806102 TCGATTAGCTTGCGCACCTC 60.806 55.000 11.12 1.32 39.10 3.85
3494 4641 0.819582 CCCCACAATCTGCAATGACC 59.180 55.000 1.23 0.00 0.00 4.02
3580 4727 1.487976 TGATGGACAGATTGAGGAGGC 59.512 52.381 0.00 0.00 0.00 4.70
3678 4825 5.008980 AGCTGCTGAATTCTCTTTAGCTTT 58.991 37.500 13.87 0.47 36.96 3.51
3749 4896 2.359850 TTGATGGCACCAGACCGC 60.360 61.111 0.00 0.00 0.00 5.68
3900 5047 3.139850 CAAGAGCAGGATCCATTAGCTG 58.860 50.000 20.92 8.58 35.36 4.24
3905 5052 3.967467 ATTCCAAGAGCAGGATCCATT 57.033 42.857 15.82 0.00 34.56 3.16
3926 5073 2.127232 AGCAACAGCTTTGCCGGTT 61.127 52.632 21.98 4.84 45.98 4.44
3931 5078 1.484356 CAAGACAGCAACAGCTTTGC 58.516 50.000 19.56 19.56 45.22 3.68
3941 5088 1.311859 CAAGACTTGCCAAGACAGCA 58.688 50.000 12.25 0.00 38.81 4.41
3955 5102 4.345257 TCCCTTCTGGTATCATAGCAAGAC 59.655 45.833 0.00 0.00 35.53 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.