Multiple sequence alignment - TraesCS3B01G443100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G443100 | chr3B | 100.000 | 4151 | 0 | 0 | 1 | 4151 | 683677409 | 683681559 | 0.000000e+00 | 7666.0 |
1 | TraesCS3B01G443100 | chr3B | 90.998 | 822 | 72 | 2 | 3332 | 4151 | 683760050 | 683760871 | 0.000000e+00 | 1107.0 |
2 | TraesCS3B01G443100 | chr3B | 90.998 | 822 | 73 | 1 | 3331 | 4151 | 684097051 | 684097872 | 0.000000e+00 | 1107.0 |
3 | TraesCS3B01G443100 | chr3B | 90.389 | 822 | 78 | 1 | 3331 | 4151 | 684041697 | 684042518 | 0.000000e+00 | 1079.0 |
4 | TraesCS3B01G443100 | chr3B | 86.983 | 822 | 106 | 1 | 3331 | 4151 | 659080749 | 659079928 | 0.000000e+00 | 924.0 |
5 | TraesCS3B01G443100 | chr3B | 82.739 | 1066 | 131 | 26 | 2249 | 3294 | 684040749 | 684041781 | 0.000000e+00 | 900.0 |
6 | TraesCS3B01G443100 | chr3B | 85.109 | 779 | 97 | 8 | 2527 | 3294 | 684096365 | 684097135 | 0.000000e+00 | 778.0 |
7 | TraesCS3B01G443100 | chr3B | 82.998 | 894 | 117 | 17 | 2416 | 3294 | 683759260 | 683760133 | 0.000000e+00 | 776.0 |
8 | TraesCS3B01G443100 | chr3B | 80.948 | 1013 | 141 | 33 | 2153 | 3136 | 684249768 | 684250757 | 0.000000e+00 | 754.0 |
9 | TraesCS3B01G443100 | chr3B | 94.427 | 323 | 11 | 5 | 757 | 1072 | 683481501 | 683481823 | 1.340000e-134 | 490.0 |
10 | TraesCS3B01G443100 | chr3B | 94.118 | 323 | 12 | 5 | 757 | 1072 | 683503042 | 683503364 | 6.240000e-133 | 484.0 |
11 | TraesCS3B01G443100 | chr3B | 96.259 | 294 | 9 | 2 | 1070 | 1363 | 805623026 | 805623317 | 8.070000e-132 | 481.0 |
12 | TraesCS3B01G443100 | chr3B | 80.818 | 636 | 97 | 15 | 52 | 682 | 373281576 | 373282191 | 3.750000e-130 | 475.0 |
13 | TraesCS3B01G443100 | chr3B | 97.122 | 278 | 7 | 1 | 2151 | 2427 | 683483239 | 683483516 | 6.280000e-128 | 468.0 |
14 | TraesCS3B01G443100 | chr3B | 96.763 | 278 | 8 | 1 | 2151 | 2427 | 683504808 | 683505085 | 2.920000e-126 | 462.0 |
15 | TraesCS3B01G443100 | chr3B | 83.696 | 460 | 46 | 18 | 1360 | 1802 | 683503357 | 683503804 | 1.390000e-109 | 407.0 |
16 | TraesCS3B01G443100 | chr3B | 85.287 | 401 | 46 | 8 | 1360 | 1751 | 684265225 | 684265621 | 6.460000e-108 | 401.0 |
17 | TraesCS3B01G443100 | chr3B | 91.697 | 277 | 23 | 0 | 1360 | 1636 | 684248721 | 684248997 | 6.510000e-103 | 385.0 |
18 | TraesCS3B01G443100 | chr3B | 82.213 | 461 | 53 | 17 | 1360 | 1809 | 684095650 | 684096092 | 1.820000e-98 | 370.0 |
19 | TraesCS3B01G443100 | chr3B | 89.286 | 252 | 16 | 5 | 1561 | 1802 | 683481985 | 683482235 | 5.210000e-79 | 305.0 |
20 | TraesCS3B01G443100 | chr3B | 90.698 | 215 | 18 | 1 | 1838 | 2052 | 683482674 | 683482886 | 6.790000e-73 | 285.0 |
21 | TraesCS3B01G443100 | chr3B | 90.698 | 215 | 18 | 1 | 1838 | 2052 | 683504243 | 683504455 | 6.790000e-73 | 285.0 |
22 | TraesCS3B01G443100 | chr3B | 82.895 | 152 | 12 | 5 | 3277 | 3415 | 683680552 | 683680702 | 1.570000e-24 | 124.0 |
23 | TraesCS3B01G443100 | chr3B | 87.069 | 116 | 8 | 4 | 956 | 1071 | 684039791 | 684039899 | 1.570000e-24 | 124.0 |
24 | TraesCS3B01G443100 | chr3B | 80.745 | 161 | 19 | 7 | 1908 | 2061 | 684040409 | 684040564 | 9.430000e-22 | 115.0 |
25 | TraesCS3B01G443100 | chr3B | 78.000 | 200 | 27 | 11 | 1892 | 2082 | 684249312 | 684249503 | 4.390000e-20 | 110.0 |
26 | TraesCS3B01G443100 | chr3B | 93.056 | 72 | 3 | 2 | 2082 | 2151 | 683483057 | 683483128 | 2.040000e-18 | 104.0 |
27 | TraesCS3B01G443100 | chr3B | 93.056 | 72 | 3 | 2 | 2082 | 2151 | 683504626 | 683504697 | 2.040000e-18 | 104.0 |
28 | TraesCS3B01G443100 | chr3B | 84.314 | 102 | 13 | 1 | 971 | 1072 | 684095559 | 684095657 | 3.420000e-16 | 97.1 |
29 | TraesCS3B01G443100 | chr3B | 79.310 | 145 | 13 | 10 | 1940 | 2082 | 683759028 | 683759157 | 7.390000e-13 | 86.1 |
30 | TraesCS3B01G443100 | chr3A | 95.772 | 1963 | 71 | 8 | 2198 | 4151 | 654358723 | 654360682 | 0.000000e+00 | 3155.0 |
31 | TraesCS3B01G443100 | chr3A | 92.926 | 721 | 50 | 1 | 3432 | 4151 | 654389641 | 654390361 | 0.000000e+00 | 1048.0 |
32 | TraesCS3B01G443100 | chr3A | 90.548 | 730 | 45 | 10 | 1364 | 2082 | 654357751 | 654358467 | 0.000000e+00 | 944.0 |
33 | TraesCS3B01G443100 | chr3A | 86.861 | 822 | 107 | 1 | 3331 | 4151 | 638334207 | 638333386 | 0.000000e+00 | 918.0 |
34 | TraesCS3B01G443100 | chr3A | 84.748 | 872 | 118 | 7 | 3294 | 4151 | 737969389 | 737968519 | 0.000000e+00 | 859.0 |
35 | TraesCS3B01G443100 | chr3A | 80.984 | 1057 | 151 | 30 | 2253 | 3294 | 654383080 | 654384101 | 0.000000e+00 | 793.0 |
36 | TraesCS3B01G443100 | chr3A | 81.256 | 1019 | 144 | 27 | 2136 | 3136 | 654568700 | 654569689 | 0.000000e+00 | 780.0 |
37 | TraesCS3B01G443100 | chr3A | 82.393 | 585 | 73 | 13 | 52 | 612 | 123982896 | 123983474 | 2.240000e-132 | 483.0 |
38 | TraesCS3B01G443100 | chr3A | 85.075 | 402 | 49 | 6 | 1360 | 1752 | 654782107 | 654782506 | 2.320000e-107 | 399.0 |
39 | TraesCS3B01G443100 | chr3A | 90.064 | 312 | 15 | 4 | 757 | 1066 | 654357451 | 654357748 | 1.400000e-104 | 390.0 |
40 | TraesCS3B01G443100 | chr3A | 89.892 | 277 | 28 | 0 | 1360 | 1636 | 654382638 | 654382914 | 1.420000e-94 | 357.0 |
41 | TraesCS3B01G443100 | chr3A | 85.886 | 333 | 44 | 3 | 1360 | 1692 | 655083191 | 655083520 | 6.600000e-93 | 351.0 |
42 | TraesCS3B01G443100 | chr3A | 80.564 | 319 | 38 | 10 | 2216 | 2530 | 638437405 | 638437107 | 1.500000e-54 | 224.0 |
43 | TraesCS3B01G443100 | chr3A | 86.486 | 148 | 20 | 0 | 3137 | 3284 | 638334281 | 638334134 | 3.320000e-36 | 163.0 |
44 | TraesCS3B01G443100 | chr3A | 95.098 | 102 | 5 | 0 | 3332 | 3433 | 654384018 | 654384119 | 1.190000e-35 | 161.0 |
45 | TraesCS3B01G443100 | chr3A | 83.553 | 152 | 11 | 3 | 3144 | 3294 | 654359807 | 654359945 | 3.370000e-26 | 130.0 |
46 | TraesCS3B01G443100 | chr3A | 85.185 | 135 | 8 | 3 | 3282 | 3404 | 654359680 | 654359814 | 1.210000e-25 | 128.0 |
47 | TraesCS3B01G443100 | chr3D | 92.926 | 2064 | 91 | 16 | 2136 | 4151 | 519334325 | 519336381 | 0.000000e+00 | 2952.0 |
48 | TraesCS3B01G443100 | chr3D | 90.389 | 822 | 77 | 2 | 3331 | 4151 | 519354460 | 519355280 | 0.000000e+00 | 1079.0 |
49 | TraesCS3B01G443100 | chr3D | 86.136 | 880 | 109 | 2 | 3285 | 4151 | 498207246 | 498206367 | 0.000000e+00 | 937.0 |
50 | TraesCS3B01G443100 | chr3D | 84.510 | 878 | 121 | 8 | 3285 | 4148 | 606300152 | 606301028 | 0.000000e+00 | 854.0 |
51 | TraesCS3B01G443100 | chr3D | 81.723 | 1056 | 143 | 28 | 2253 | 3294 | 519353525 | 519354544 | 0.000000e+00 | 835.0 |
52 | TraesCS3B01G443100 | chr3D | 95.793 | 309 | 12 | 1 | 1364 | 1671 | 519333631 | 519333939 | 8.010000e-137 | 497.0 |
53 | TraesCS3B01G443100 | chr3D | 82.051 | 546 | 76 | 12 | 140 | 682 | 277068433 | 277067907 | 2.940000e-121 | 446.0 |
54 | TraesCS3B01G443100 | chr3D | 79.604 | 657 | 103 | 15 | 52 | 682 | 512502976 | 512503627 | 3.810000e-120 | 442.0 |
55 | TraesCS3B01G443100 | chr3D | 97.447 | 235 | 6 | 0 | 832 | 1066 | 519333394 | 519333628 | 6.460000e-108 | 401.0 |
56 | TraesCS3B01G443100 | chr3D | 84.788 | 401 | 50 | 8 | 1360 | 1752 | 519682170 | 519682567 | 3.890000e-105 | 392.0 |
57 | TraesCS3B01G443100 | chr3D | 92.697 | 178 | 9 | 2 | 1906 | 2082 | 519333948 | 519334122 | 1.920000e-63 | 254.0 |
58 | TraesCS3B01G443100 | chr3D | 92.763 | 152 | 9 | 2 | 3144 | 3294 | 519335494 | 519335644 | 6.990000e-53 | 219.0 |
59 | TraesCS3B01G443100 | chr3D | 88.514 | 148 | 17 | 0 | 3137 | 3284 | 498207262 | 498207115 | 3.300000e-41 | 180.0 |
60 | TraesCS3B01G443100 | chr3D | 90.196 | 102 | 7 | 1 | 971 | 1072 | 519343807 | 519343905 | 3.370000e-26 | 130.0 |
61 | TraesCS3B01G443100 | chr3D | 83.704 | 135 | 10 | 1 | 3282 | 3404 | 519335367 | 519335501 | 2.620000e-22 | 117.0 |
62 | TraesCS3B01G443100 | chr3D | 93.846 | 65 | 4 | 0 | 2087 | 2151 | 519334182 | 519334246 | 9.500000e-17 | 99.0 |
63 | TraesCS3B01G443100 | chr7A | 97.917 | 288 | 6 | 0 | 1072 | 1359 | 704890110 | 704890397 | 2.230000e-137 | 499.0 |
64 | TraesCS3B01G443100 | chr7A | 81.264 | 459 | 72 | 11 | 2674 | 3122 | 429047889 | 429047435 | 3.950000e-95 | 359.0 |
65 | TraesCS3B01G443100 | chr7A | 79.242 | 554 | 80 | 13 | 54 | 583 | 414203744 | 414204286 | 1.840000e-93 | 353.0 |
66 | TraesCS3B01G443100 | chrUn | 97.578 | 289 | 7 | 0 | 1071 | 1359 | 42262233 | 42261945 | 2.880000e-136 | 496.0 |
67 | TraesCS3B01G443100 | chrUn | 97.232 | 289 | 8 | 0 | 1071 | 1359 | 38969289 | 38969577 | 1.340000e-134 | 490.0 |
68 | TraesCS3B01G443100 | chr1B | 97.241 | 290 | 8 | 0 | 1073 | 1362 | 21355723 | 21355434 | 3.730000e-135 | 492.0 |
69 | TraesCS3B01G443100 | chr1B | 96.346 | 301 | 8 | 3 | 1070 | 1369 | 524488159 | 524487861 | 3.730000e-135 | 492.0 |
70 | TraesCS3B01G443100 | chr1B | 79.511 | 654 | 105 | 18 | 52 | 680 | 178726436 | 178725787 | 4.930000e-119 | 438.0 |
71 | TraesCS3B01G443100 | chr7B | 96.897 | 290 | 9 | 0 | 1070 | 1359 | 725691813 | 725691524 | 1.730000e-133 | 486.0 |
72 | TraesCS3B01G443100 | chr7B | 81.818 | 473 | 72 | 11 | 2674 | 3136 | 375442138 | 375441670 | 6.510000e-103 | 385.0 |
73 | TraesCS3B01G443100 | chr2B | 96.233 | 292 | 11 | 0 | 1068 | 1359 | 707253840 | 707253549 | 2.900000e-131 | 479.0 |
74 | TraesCS3B01G443100 | chr2B | 96.207 | 290 | 11 | 0 | 1069 | 1358 | 17574986 | 17575275 | 3.750000e-130 | 475.0 |
75 | TraesCS3B01G443100 | chr5D | 80.213 | 657 | 99 | 13 | 52 | 682 | 315620494 | 315621145 | 8.130000e-127 | 464.0 |
76 | TraesCS3B01G443100 | chr5D | 81.101 | 545 | 94 | 7 | 140 | 680 | 218294013 | 218294552 | 1.070000e-115 | 427.0 |
77 | TraesCS3B01G443100 | chr7D | 80.060 | 662 | 96 | 21 | 56 | 691 | 233198215 | 233198866 | 3.780000e-125 | 459.0 |
78 | TraesCS3B01G443100 | chr7D | 81.184 | 473 | 75 | 11 | 2674 | 3136 | 381001796 | 381001328 | 6.560000e-98 | 368.0 |
79 | TraesCS3B01G443100 | chr4D | 78.947 | 665 | 108 | 17 | 52 | 691 | 445089289 | 445088632 | 1.380000e-114 | 424.0 |
80 | TraesCS3B01G443100 | chr5B | 78.660 | 403 | 56 | 16 | 52 | 429 | 24235099 | 24235496 | 1.490000e-59 | 241.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G443100 | chr3B | 683677409 | 683681559 | 4150 | False | 3895.000000 | 7666 | 91.447500 | 1 | 4151 | 2 | chr3B.!!$F6 | 4150 |
1 | TraesCS3B01G443100 | chr3B | 659079928 | 659080749 | 821 | True | 924.000000 | 924 | 86.983000 | 3331 | 4151 | 1 | chr3B.!!$R1 | 820 |
2 | TraesCS3B01G443100 | chr3B | 683759028 | 683760871 | 1843 | False | 656.366667 | 1107 | 84.435333 | 1940 | 4151 | 3 | chr3B.!!$F7 | 2211 |
3 | TraesCS3B01G443100 | chr3B | 684095559 | 684097872 | 2313 | False | 588.025000 | 1107 | 85.658500 | 971 | 4151 | 4 | chr3B.!!$F9 | 3180 |
4 | TraesCS3B01G443100 | chr3B | 684039791 | 684042518 | 2727 | False | 554.500000 | 1079 | 85.235500 | 956 | 4151 | 4 | chr3B.!!$F8 | 3195 |
5 | TraesCS3B01G443100 | chr3B | 373281576 | 373282191 | 615 | False | 475.000000 | 475 | 80.818000 | 52 | 682 | 1 | chr3B.!!$F1 | 630 |
6 | TraesCS3B01G443100 | chr3B | 684248721 | 684250757 | 2036 | False | 416.333333 | 754 | 83.548333 | 1360 | 3136 | 3 | chr3B.!!$F10 | 1776 |
7 | TraesCS3B01G443100 | chr3B | 683503042 | 683505085 | 2043 | False | 348.400000 | 484 | 91.666200 | 757 | 2427 | 5 | chr3B.!!$F5 | 1670 |
8 | TraesCS3B01G443100 | chr3B | 683481501 | 683483516 | 2015 | False | 330.400000 | 490 | 92.917800 | 757 | 2427 | 5 | chr3B.!!$F4 | 1670 |
9 | TraesCS3B01G443100 | chr3A | 654389641 | 654390361 | 720 | False | 1048.000000 | 1048 | 92.926000 | 3432 | 4151 | 1 | chr3A.!!$F2 | 719 |
10 | TraesCS3B01G443100 | chr3A | 654357451 | 654360682 | 3231 | False | 949.400000 | 3155 | 89.024400 | 757 | 4151 | 5 | chr3A.!!$F6 | 3394 |
11 | TraesCS3B01G443100 | chr3A | 737968519 | 737969389 | 870 | True | 859.000000 | 859 | 84.748000 | 3294 | 4151 | 1 | chr3A.!!$R2 | 857 |
12 | TraesCS3B01G443100 | chr3A | 654568700 | 654569689 | 989 | False | 780.000000 | 780 | 81.256000 | 2136 | 3136 | 1 | chr3A.!!$F3 | 1000 |
13 | TraesCS3B01G443100 | chr3A | 638333386 | 638334281 | 895 | True | 540.500000 | 918 | 86.673500 | 3137 | 4151 | 2 | chr3A.!!$R3 | 1014 |
14 | TraesCS3B01G443100 | chr3A | 123982896 | 123983474 | 578 | False | 483.000000 | 483 | 82.393000 | 52 | 612 | 1 | chr3A.!!$F1 | 560 |
15 | TraesCS3B01G443100 | chr3A | 654382638 | 654384119 | 1481 | False | 437.000000 | 793 | 88.658000 | 1360 | 3433 | 3 | chr3A.!!$F7 | 2073 |
16 | TraesCS3B01G443100 | chr3D | 519353525 | 519355280 | 1755 | False | 957.000000 | 1079 | 86.056000 | 2253 | 4151 | 2 | chr3D.!!$F6 | 1898 |
17 | TraesCS3B01G443100 | chr3D | 606300152 | 606301028 | 876 | False | 854.000000 | 854 | 84.510000 | 3285 | 4148 | 1 | chr3D.!!$F4 | 863 |
18 | TraesCS3B01G443100 | chr3D | 519333394 | 519336381 | 2987 | False | 648.428571 | 2952 | 92.739429 | 832 | 4151 | 7 | chr3D.!!$F5 | 3319 |
19 | TraesCS3B01G443100 | chr3D | 498206367 | 498207262 | 895 | True | 558.500000 | 937 | 87.325000 | 3137 | 4151 | 2 | chr3D.!!$R2 | 1014 |
20 | TraesCS3B01G443100 | chr3D | 277067907 | 277068433 | 526 | True | 446.000000 | 446 | 82.051000 | 140 | 682 | 1 | chr3D.!!$R1 | 542 |
21 | TraesCS3B01G443100 | chr3D | 512502976 | 512503627 | 651 | False | 442.000000 | 442 | 79.604000 | 52 | 682 | 1 | chr3D.!!$F1 | 630 |
22 | TraesCS3B01G443100 | chr7A | 414203744 | 414204286 | 542 | False | 353.000000 | 353 | 79.242000 | 54 | 583 | 1 | chr7A.!!$F1 | 529 |
23 | TraesCS3B01G443100 | chr1B | 178725787 | 178726436 | 649 | True | 438.000000 | 438 | 79.511000 | 52 | 680 | 1 | chr1B.!!$R2 | 628 |
24 | TraesCS3B01G443100 | chr5D | 315620494 | 315621145 | 651 | False | 464.000000 | 464 | 80.213000 | 52 | 682 | 1 | chr5D.!!$F2 | 630 |
25 | TraesCS3B01G443100 | chr5D | 218294013 | 218294552 | 539 | False | 427.000000 | 427 | 81.101000 | 140 | 680 | 1 | chr5D.!!$F1 | 540 |
26 | TraesCS3B01G443100 | chr7D | 233198215 | 233198866 | 651 | False | 459.000000 | 459 | 80.060000 | 56 | 691 | 1 | chr7D.!!$F1 | 635 |
27 | TraesCS3B01G443100 | chr4D | 445088632 | 445089289 | 657 | True | 424.000000 | 424 | 78.947000 | 52 | 691 | 1 | chr4D.!!$R1 | 639 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
696 | 745 | 0.030908 | GGAGACGATGCCCTTACTCG | 59.969 | 60.000 | 0.00 | 0.0 | 38.34 | 4.18 | F |
1173 | 1229 | 0.035176 | TGCATTTCAGCCAAAAGGCC | 59.965 | 50.000 | 13.40 | 0.0 | 43.34 | 5.19 | F |
1174 | 1230 | 0.035176 | GCATTTCAGCCAAAAGGCCA | 59.965 | 50.000 | 5.01 | 0.0 | 39.37 | 5.36 | F |
1617 | 1702 | 1.269998 | CGACCACGACTTTCTCCTCTT | 59.730 | 52.381 | 0.00 | 0.0 | 42.66 | 2.85 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1617 | 1702 | 0.539669 | TTCTCACTGGTCAGCGAGGA | 60.540 | 55.0 | 13.87 | 4.84 | 37.98 | 3.71 | R |
2587 | 3677 | 0.598680 | GACAGACTTGCAGAGCACGT | 60.599 | 55.0 | 0.51 | 0.51 | 43.48 | 4.49 | R |
2920 | 4053 | 0.612744 | TCATCCCTGTCATTGTCGCA | 59.387 | 50.0 | 0.00 | 0.00 | 0.00 | 5.10 | R |
3388 | 4533 | 0.806102 | TCGATTAGCTTGCGCACCTC | 60.806 | 55.0 | 11.12 | 1.32 | 39.10 | 3.85 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 4.097828 | TCCGCGAATTTCGTAGGC | 57.902 | 55.556 | 22.04 | 7.10 | 42.81 | 3.93 |
18 | 19 | 1.215912 | TCCGCGAATTTCGTAGGCA | 59.784 | 52.632 | 22.04 | 13.05 | 42.81 | 4.75 |
19 | 20 | 0.804544 | TCCGCGAATTTCGTAGGCAG | 60.805 | 55.000 | 22.04 | 8.92 | 42.81 | 4.85 |
20 | 21 | 0.804544 | CCGCGAATTTCGTAGGCAGA | 60.805 | 55.000 | 19.10 | 0.00 | 42.81 | 4.26 |
21 | 22 | 0.996462 | CGCGAATTTCGTAGGCAGAA | 59.004 | 50.000 | 19.10 | 0.00 | 42.81 | 3.02 |
22 | 23 | 1.005975 | CGCGAATTTCGTAGGCAGAAG | 60.006 | 52.381 | 19.10 | 0.00 | 42.81 | 2.85 |
23 | 24 | 1.267582 | GCGAATTTCGTAGGCAGAAGC | 60.268 | 52.381 | 19.10 | 0.00 | 42.81 | 3.86 |
24 | 25 | 1.999735 | CGAATTTCGTAGGCAGAAGCA | 59.000 | 47.619 | 10.61 | 0.00 | 37.55 | 3.91 |
25 | 26 | 2.415168 | CGAATTTCGTAGGCAGAAGCAA | 59.585 | 45.455 | 10.61 | 0.00 | 37.55 | 3.91 |
26 | 27 | 3.120338 | CGAATTTCGTAGGCAGAAGCAAA | 60.120 | 43.478 | 10.61 | 0.00 | 37.55 | 3.68 |
27 | 28 | 3.831715 | ATTTCGTAGGCAGAAGCAAAC | 57.168 | 42.857 | 0.00 | 0.00 | 44.61 | 2.93 |
28 | 29 | 2.248280 | TTCGTAGGCAGAAGCAAACA | 57.752 | 45.000 | 0.00 | 0.00 | 44.61 | 2.83 |
29 | 30 | 1.795768 | TCGTAGGCAGAAGCAAACAG | 58.204 | 50.000 | 0.00 | 0.00 | 44.61 | 3.16 |
30 | 31 | 0.798776 | CGTAGGCAGAAGCAAACAGG | 59.201 | 55.000 | 0.00 | 0.00 | 44.61 | 4.00 |
31 | 32 | 1.608025 | CGTAGGCAGAAGCAAACAGGA | 60.608 | 52.381 | 0.00 | 0.00 | 44.61 | 3.86 |
32 | 33 | 2.079925 | GTAGGCAGAAGCAAACAGGAG | 58.920 | 52.381 | 0.00 | 0.00 | 44.61 | 3.69 |
33 | 34 | 0.251077 | AGGCAGAAGCAAACAGGAGG | 60.251 | 55.000 | 0.00 | 0.00 | 44.61 | 4.30 |
34 | 35 | 1.583477 | GCAGAAGCAAACAGGAGGC | 59.417 | 57.895 | 0.00 | 0.00 | 41.58 | 4.70 |
35 | 36 | 1.174712 | GCAGAAGCAAACAGGAGGCA | 61.175 | 55.000 | 0.00 | 0.00 | 41.58 | 4.75 |
36 | 37 | 1.321474 | CAGAAGCAAACAGGAGGCAA | 58.679 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
37 | 38 | 1.682854 | CAGAAGCAAACAGGAGGCAAA | 59.317 | 47.619 | 0.00 | 0.00 | 0.00 | 3.68 |
38 | 39 | 2.101249 | CAGAAGCAAACAGGAGGCAAAA | 59.899 | 45.455 | 0.00 | 0.00 | 0.00 | 2.44 |
39 | 40 | 2.363359 | AGAAGCAAACAGGAGGCAAAAG | 59.637 | 45.455 | 0.00 | 0.00 | 0.00 | 2.27 |
40 | 41 | 0.390492 | AGCAAACAGGAGGCAAAAGC | 59.610 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
41 | 42 | 0.104671 | GCAAACAGGAGGCAAAAGCA | 59.895 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
42 | 43 | 1.856802 | CAAACAGGAGGCAAAAGCAC | 58.143 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
43 | 44 | 1.136695 | CAAACAGGAGGCAAAAGCACA | 59.863 | 47.619 | 0.00 | 0.00 | 0.00 | 4.57 |
44 | 45 | 1.708341 | AACAGGAGGCAAAAGCACAT | 58.292 | 45.000 | 0.00 | 0.00 | 0.00 | 3.21 |
45 | 46 | 1.708341 | ACAGGAGGCAAAAGCACATT | 58.292 | 45.000 | 0.00 | 0.00 | 0.00 | 2.71 |
46 | 47 | 1.342174 | ACAGGAGGCAAAAGCACATTG | 59.658 | 47.619 | 0.00 | 0.00 | 0.00 | 2.82 |
138 | 139 | 0.173935 | ACAACACAACGTGAGGTCGA | 59.826 | 50.000 | 0.24 | 0.00 | 36.96 | 4.20 |
188 | 227 | 0.040692 | CGTGGTTCGTCAACTCGAGA | 60.041 | 55.000 | 21.68 | 0.00 | 40.86 | 4.04 |
197 | 236 | 1.068741 | GTCAACTCGAGACAAGGTGGT | 59.931 | 52.381 | 21.68 | 0.00 | 36.06 | 4.16 |
215 | 254 | 1.560923 | GTCATTGTGCGCGATAGAGT | 58.439 | 50.000 | 12.10 | 0.00 | 38.56 | 3.24 |
217 | 256 | 3.309388 | GTCATTGTGCGCGATAGAGTAT | 58.691 | 45.455 | 12.10 | 0.00 | 38.56 | 2.12 |
221 | 260 | 1.947456 | TGTGCGCGATAGAGTATGAGT | 59.053 | 47.619 | 12.10 | 0.00 | 38.56 | 3.41 |
231 | 271 | 7.096966 | CGCGATAGAGTATGAGTTTGTAAGTTC | 60.097 | 40.741 | 0.00 | 0.00 | 39.76 | 3.01 |
284 | 324 | 7.830697 | TGATTCATTCACTCAATGTTGGTCTAT | 59.169 | 33.333 | 0.00 | 0.00 | 42.47 | 1.98 |
308 | 351 | 6.452494 | ACATTATATGTAGCTACGCCCTAG | 57.548 | 41.667 | 18.74 | 8.53 | 42.78 | 3.02 |
333 | 376 | 3.224269 | GGAGTACCATAGGACAGAGGAC | 58.776 | 54.545 | 0.00 | 0.00 | 35.97 | 3.85 |
341 | 384 | 0.684805 | AGGACAGAGGACCGACCATC | 60.685 | 60.000 | 0.00 | 0.00 | 42.04 | 3.51 |
347 | 390 | 0.381089 | GAGGACCGACCATCTACGTG | 59.619 | 60.000 | 0.00 | 0.00 | 42.04 | 4.49 |
348 | 391 | 1.226888 | GGACCGACCATCTACGTGC | 60.227 | 63.158 | 0.00 | 0.00 | 38.79 | 5.34 |
375 | 418 | 3.181451 | ACACTGTTGGATGAAGCTGAAGA | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 2.87 |
398 | 441 | 3.131577 | GGGAGTATGTGTGGAACGACATA | 59.868 | 47.826 | 0.00 | 0.00 | 42.39 | 2.29 |
403 | 446 | 7.493320 | GGAGTATGTGTGGAACGACATAATTTA | 59.507 | 37.037 | 0.00 | 0.00 | 40.13 | 1.40 |
449 | 495 | 4.051922 | CCGGAATCTAGTCGAATTTGAGG | 58.948 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
464 | 510 | 6.688385 | CGAATTTGAGGCATTGTTGTACTATG | 59.312 | 38.462 | 0.00 | 0.00 | 35.06 | 2.23 |
585 | 632 | 1.472480 | GCAGGTTGAAATGTATGCGGT | 59.528 | 47.619 | 0.00 | 0.00 | 0.00 | 5.68 |
618 | 665 | 1.406341 | GCGGCCTCCTGTATTTGTGTA | 60.406 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
624 | 671 | 2.671396 | CTCCTGTATTTGTGTACACGGC | 59.329 | 50.000 | 20.61 | 9.28 | 31.64 | 5.68 |
638 | 685 | 2.587889 | CGGCCTGGTCCCGTTATT | 59.412 | 61.111 | 0.00 | 0.00 | 40.84 | 1.40 |
682 | 731 | 2.617274 | GCAGGTTGCCGTTGGAGAC | 61.617 | 63.158 | 0.00 | 0.00 | 37.42 | 3.36 |
693 | 742 | 1.653151 | GTTGGAGACGATGCCCTTAC | 58.347 | 55.000 | 0.00 | 0.00 | 0.00 | 2.34 |
694 | 743 | 1.207329 | GTTGGAGACGATGCCCTTACT | 59.793 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
695 | 744 | 1.112113 | TGGAGACGATGCCCTTACTC | 58.888 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
696 | 745 | 0.030908 | GGAGACGATGCCCTTACTCG | 59.969 | 60.000 | 0.00 | 0.00 | 38.34 | 4.18 |
698 | 747 | 1.134560 | GAGACGATGCCCTTACTCGTT | 59.865 | 52.381 | 0.00 | 0.00 | 44.89 | 3.85 |
699 | 748 | 1.135083 | AGACGATGCCCTTACTCGTTG | 60.135 | 52.381 | 0.00 | 0.00 | 44.89 | 4.10 |
700 | 749 | 0.606604 | ACGATGCCCTTACTCGTTGT | 59.393 | 50.000 | 0.00 | 0.00 | 42.52 | 3.32 |
701 | 750 | 0.999406 | CGATGCCCTTACTCGTTGTG | 59.001 | 55.000 | 0.00 | 0.00 | 0.00 | 3.33 |
702 | 751 | 1.671850 | CGATGCCCTTACTCGTTGTGT | 60.672 | 52.381 | 0.00 | 0.00 | 0.00 | 3.72 |
703 | 752 | 2.423577 | GATGCCCTTACTCGTTGTGTT | 58.576 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
704 | 753 | 2.335316 | TGCCCTTACTCGTTGTGTTT | 57.665 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
705 | 754 | 1.944024 | TGCCCTTACTCGTTGTGTTTG | 59.056 | 47.619 | 0.00 | 0.00 | 0.00 | 2.93 |
706 | 755 | 1.265905 | GCCCTTACTCGTTGTGTTTGG | 59.734 | 52.381 | 0.00 | 0.00 | 0.00 | 3.28 |
707 | 756 | 2.841215 | CCCTTACTCGTTGTGTTTGGA | 58.159 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
708 | 757 | 2.546789 | CCCTTACTCGTTGTGTTTGGAC | 59.453 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
709 | 758 | 3.199677 | CCTTACTCGTTGTGTTTGGACA | 58.800 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
726 | 775 | 3.706994 | GACACGTCCATTTCTCGAAAG | 57.293 | 47.619 | 0.00 | 0.00 | 33.32 | 2.62 |
727 | 776 | 3.057734 | GACACGTCCATTTCTCGAAAGT | 58.942 | 45.455 | 0.00 | 0.00 | 33.32 | 2.66 |
728 | 777 | 4.232221 | GACACGTCCATTTCTCGAAAGTA | 58.768 | 43.478 | 0.00 | 0.00 | 33.32 | 2.24 |
729 | 778 | 4.817517 | ACACGTCCATTTCTCGAAAGTAT | 58.182 | 39.130 | 0.00 | 0.00 | 33.32 | 2.12 |
730 | 779 | 5.235516 | ACACGTCCATTTCTCGAAAGTATT | 58.764 | 37.500 | 0.00 | 0.00 | 33.32 | 1.89 |
731 | 780 | 5.699458 | ACACGTCCATTTCTCGAAAGTATTT | 59.301 | 36.000 | 0.00 | 0.00 | 43.98 | 1.40 |
732 | 781 | 6.204108 | ACACGTCCATTTCTCGAAAGTATTTT | 59.796 | 34.615 | 0.00 | 0.00 | 39.27 | 1.82 |
733 | 782 | 6.736853 | CACGTCCATTTCTCGAAAGTATTTTC | 59.263 | 38.462 | 0.76 | 0.76 | 39.27 | 2.29 |
734 | 783 | 6.425721 | ACGTCCATTTCTCGAAAGTATTTTCA | 59.574 | 34.615 | 10.84 | 0.00 | 42.27 | 2.69 |
735 | 784 | 6.955963 | CGTCCATTTCTCGAAAGTATTTTCAG | 59.044 | 38.462 | 10.84 | 7.41 | 42.27 | 3.02 |
736 | 785 | 7.148639 | CGTCCATTTCTCGAAAGTATTTTCAGA | 60.149 | 37.037 | 10.84 | 9.22 | 42.27 | 3.27 |
737 | 786 | 7.958025 | GTCCATTTCTCGAAAGTATTTTCAGAC | 59.042 | 37.037 | 10.84 | 1.79 | 42.27 | 3.51 |
738 | 787 | 6.955963 | CCATTTCTCGAAAGTATTTTCAGACG | 59.044 | 38.462 | 10.84 | 0.00 | 42.27 | 4.18 |
739 | 788 | 6.462073 | TTTCTCGAAAGTATTTTCAGACGG | 57.538 | 37.500 | 10.84 | 0.00 | 42.27 | 4.79 |
740 | 789 | 5.381174 | TCTCGAAAGTATTTTCAGACGGA | 57.619 | 39.130 | 10.84 | 0.00 | 42.27 | 4.69 |
741 | 790 | 5.399858 | TCTCGAAAGTATTTTCAGACGGAG | 58.600 | 41.667 | 10.84 | 8.32 | 42.27 | 4.63 |
742 | 791 | 4.491676 | TCGAAAGTATTTTCAGACGGAGG | 58.508 | 43.478 | 10.84 | 0.00 | 42.27 | 4.30 |
743 | 792 | 3.617263 | CGAAAGTATTTTCAGACGGAGGG | 59.383 | 47.826 | 10.84 | 0.00 | 42.27 | 4.30 |
744 | 793 | 4.619863 | CGAAAGTATTTTCAGACGGAGGGA | 60.620 | 45.833 | 10.84 | 0.00 | 42.27 | 4.20 |
745 | 794 | 4.903045 | AAGTATTTTCAGACGGAGGGAA | 57.097 | 40.909 | 0.00 | 0.00 | 0.00 | 3.97 |
746 | 795 | 5.437191 | AAGTATTTTCAGACGGAGGGAAT | 57.563 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
747 | 796 | 5.437191 | AGTATTTTCAGACGGAGGGAATT | 57.563 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
748 | 797 | 5.816682 | AGTATTTTCAGACGGAGGGAATTT | 58.183 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
749 | 798 | 6.246163 | AGTATTTTCAGACGGAGGGAATTTT | 58.754 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
750 | 799 | 6.719829 | AGTATTTTCAGACGGAGGGAATTTTT | 59.280 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
775 | 824 | 4.625311 | CGGGGATTTTTGTGCAAAATAGTC | 59.375 | 41.667 | 10.39 | 9.12 | 39.69 | 2.59 |
776 | 825 | 4.625311 | GGGGATTTTTGTGCAAAATAGTCG | 59.375 | 41.667 | 10.39 | 0.00 | 39.69 | 4.18 |
794 | 843 | 1.024579 | CGAATTCCCCACCTGAACCG | 61.025 | 60.000 | 0.00 | 0.00 | 0.00 | 4.44 |
1031 | 1087 | 4.636435 | CCCCTCGTTTGTGCCGGT | 62.636 | 66.667 | 1.90 | 0.00 | 0.00 | 5.28 |
1073 | 1129 | 4.329545 | GGAGCTGCCGTTGGACCA | 62.330 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
1074 | 1130 | 2.045926 | GAGCTGCCGTTGGACCAT | 60.046 | 61.111 | 0.00 | 0.00 | 0.00 | 3.55 |
1075 | 1131 | 2.360350 | AGCTGCCGTTGGACCATG | 60.360 | 61.111 | 0.00 | 0.00 | 0.00 | 3.66 |
1076 | 1132 | 3.443045 | GCTGCCGTTGGACCATGG | 61.443 | 66.667 | 11.19 | 11.19 | 0.00 | 3.66 |
1077 | 1133 | 2.034066 | CTGCCGTTGGACCATGGT | 59.966 | 61.111 | 19.89 | 19.89 | 0.00 | 3.55 |
1078 | 1134 | 1.603455 | CTGCCGTTGGACCATGGTT | 60.603 | 57.895 | 20.85 | 2.15 | 0.00 | 3.67 |
1079 | 1135 | 1.152652 | TGCCGTTGGACCATGGTTT | 60.153 | 52.632 | 20.85 | 0.00 | 0.00 | 3.27 |
1080 | 1136 | 0.757188 | TGCCGTTGGACCATGGTTTT | 60.757 | 50.000 | 20.85 | 0.00 | 0.00 | 2.43 |
1081 | 1137 | 0.038618 | GCCGTTGGACCATGGTTTTC | 60.039 | 55.000 | 20.85 | 12.43 | 0.00 | 2.29 |
1082 | 1138 | 1.323412 | CCGTTGGACCATGGTTTTCA | 58.677 | 50.000 | 20.85 | 14.92 | 0.00 | 2.69 |
1083 | 1139 | 1.683917 | CCGTTGGACCATGGTTTTCAA | 59.316 | 47.619 | 20.85 | 19.63 | 0.00 | 2.69 |
1084 | 1140 | 2.298729 | CCGTTGGACCATGGTTTTCAAT | 59.701 | 45.455 | 20.85 | 0.00 | 0.00 | 2.57 |
1085 | 1141 | 3.244044 | CCGTTGGACCATGGTTTTCAATT | 60.244 | 43.478 | 20.85 | 0.00 | 0.00 | 2.32 |
1086 | 1142 | 4.376146 | CGTTGGACCATGGTTTTCAATTT | 58.624 | 39.130 | 20.85 | 0.00 | 0.00 | 1.82 |
1087 | 1143 | 4.447389 | CGTTGGACCATGGTTTTCAATTTC | 59.553 | 41.667 | 20.85 | 10.99 | 0.00 | 2.17 |
1088 | 1144 | 5.363939 | GTTGGACCATGGTTTTCAATTTCA | 58.636 | 37.500 | 20.85 | 0.00 | 0.00 | 2.69 |
1089 | 1145 | 5.212532 | TGGACCATGGTTTTCAATTTCAG | 57.787 | 39.130 | 20.85 | 0.00 | 0.00 | 3.02 |
1090 | 1146 | 4.653341 | TGGACCATGGTTTTCAATTTCAGT | 59.347 | 37.500 | 20.85 | 0.00 | 0.00 | 3.41 |
1091 | 1147 | 5.130145 | TGGACCATGGTTTTCAATTTCAGTT | 59.870 | 36.000 | 20.85 | 0.00 | 0.00 | 3.16 |
1092 | 1148 | 6.054941 | GGACCATGGTTTTCAATTTCAGTTT | 58.945 | 36.000 | 20.85 | 0.00 | 0.00 | 2.66 |
1093 | 1149 | 6.202762 | GGACCATGGTTTTCAATTTCAGTTTC | 59.797 | 38.462 | 20.85 | 0.00 | 0.00 | 2.78 |
1094 | 1150 | 6.648192 | ACCATGGTTTTCAATTTCAGTTTCA | 58.352 | 32.000 | 13.00 | 0.00 | 0.00 | 2.69 |
1095 | 1151 | 7.108847 | ACCATGGTTTTCAATTTCAGTTTCAA | 58.891 | 30.769 | 13.00 | 0.00 | 0.00 | 2.69 |
1096 | 1152 | 7.065683 | ACCATGGTTTTCAATTTCAGTTTCAAC | 59.934 | 33.333 | 13.00 | 0.00 | 0.00 | 3.18 |
1097 | 1153 | 7.065563 | CCATGGTTTTCAATTTCAGTTTCAACA | 59.934 | 33.333 | 2.57 | 0.00 | 0.00 | 3.33 |
1098 | 1154 | 7.969536 | TGGTTTTCAATTTCAGTTTCAACAA | 57.030 | 28.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1099 | 1155 | 8.383318 | TGGTTTTCAATTTCAGTTTCAACAAA | 57.617 | 26.923 | 0.00 | 0.00 | 0.00 | 2.83 |
1100 | 1156 | 8.840321 | TGGTTTTCAATTTCAGTTTCAACAAAA | 58.160 | 25.926 | 0.00 | 0.00 | 0.00 | 2.44 |
1101 | 1157 | 9.838975 | GGTTTTCAATTTCAGTTTCAACAAAAT | 57.161 | 25.926 | 0.00 | 0.00 | 31.86 | 1.82 |
1107 | 1163 | 9.002080 | CAATTTCAGTTTCAACAAAATTTCAGC | 57.998 | 29.630 | 10.66 | 0.00 | 35.86 | 4.26 |
1108 | 1164 | 7.664082 | TTTCAGTTTCAACAAAATTTCAGCA | 57.336 | 28.000 | 0.00 | 0.00 | 0.00 | 4.41 |
1109 | 1165 | 6.645700 | TCAGTTTCAACAAAATTTCAGCAC | 57.354 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
1110 | 1166 | 5.580297 | TCAGTTTCAACAAAATTTCAGCACC | 59.420 | 36.000 | 0.00 | 0.00 | 0.00 | 5.01 |
1111 | 1167 | 5.350914 | CAGTTTCAACAAAATTTCAGCACCA | 59.649 | 36.000 | 0.00 | 0.00 | 0.00 | 4.17 |
1112 | 1168 | 5.936956 | AGTTTCAACAAAATTTCAGCACCAA | 59.063 | 32.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1113 | 1169 | 5.793026 | TTCAACAAAATTTCAGCACCAAC | 57.207 | 34.783 | 0.00 | 0.00 | 0.00 | 3.77 |
1114 | 1170 | 5.083533 | TCAACAAAATTTCAGCACCAACT | 57.916 | 34.783 | 0.00 | 0.00 | 0.00 | 3.16 |
1115 | 1171 | 4.869297 | TCAACAAAATTTCAGCACCAACTG | 59.131 | 37.500 | 0.00 | 0.00 | 39.12 | 3.16 |
1116 | 1172 | 4.734398 | ACAAAATTTCAGCACCAACTGA | 57.266 | 36.364 | 0.00 | 0.00 | 44.84 | 3.41 |
1123 | 1179 | 3.213206 | TCAGCACCAACTGAAATCACT | 57.787 | 42.857 | 0.00 | 0.00 | 43.59 | 3.41 |
1124 | 1180 | 2.880268 | TCAGCACCAACTGAAATCACTG | 59.120 | 45.455 | 0.00 | 0.00 | 43.59 | 3.66 |
1125 | 1181 | 2.880268 | CAGCACCAACTGAAATCACTGA | 59.120 | 45.455 | 0.00 | 0.00 | 40.25 | 3.41 |
1126 | 1182 | 3.316029 | CAGCACCAACTGAAATCACTGAA | 59.684 | 43.478 | 0.00 | 0.00 | 40.25 | 3.02 |
1127 | 1183 | 3.953612 | AGCACCAACTGAAATCACTGAAA | 59.046 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
1128 | 1184 | 4.586001 | AGCACCAACTGAAATCACTGAAAT | 59.414 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
1129 | 1185 | 5.069516 | AGCACCAACTGAAATCACTGAAATT | 59.930 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
1130 | 1186 | 5.403466 | GCACCAACTGAAATCACTGAAATTC | 59.597 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
1131 | 1187 | 6.506147 | CACCAACTGAAATCACTGAAATTCA | 58.494 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1164 | 1220 | 8.519492 | TTAGTTATTTCAGTTTGCATTTCAGC | 57.481 | 30.769 | 0.00 | 0.00 | 0.00 | 4.26 |
1165 | 1221 | 5.928264 | AGTTATTTCAGTTTGCATTTCAGCC | 59.072 | 36.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1166 | 1222 | 3.815856 | TTTCAGTTTGCATTTCAGCCA | 57.184 | 38.095 | 0.00 | 0.00 | 0.00 | 4.75 |
1167 | 1223 | 3.815856 | TTCAGTTTGCATTTCAGCCAA | 57.184 | 38.095 | 0.00 | 0.00 | 0.00 | 4.52 |
1168 | 1224 | 3.815856 | TCAGTTTGCATTTCAGCCAAA | 57.184 | 38.095 | 0.00 | 0.00 | 0.00 | 3.28 |
1169 | 1225 | 4.134379 | TCAGTTTGCATTTCAGCCAAAA | 57.866 | 36.364 | 0.00 | 0.00 | 0.00 | 2.44 |
1170 | 1226 | 4.121317 | TCAGTTTGCATTTCAGCCAAAAG | 58.879 | 39.130 | 0.00 | 0.00 | 0.00 | 2.27 |
1171 | 1227 | 3.249080 | CAGTTTGCATTTCAGCCAAAAGG | 59.751 | 43.478 | 0.00 | 0.00 | 0.00 | 3.11 |
1172 | 1228 | 1.881591 | TTGCATTTCAGCCAAAAGGC | 58.118 | 45.000 | 10.18 | 10.18 | 44.03 | 4.35 |
1173 | 1229 | 0.035176 | TGCATTTCAGCCAAAAGGCC | 59.965 | 50.000 | 13.40 | 0.00 | 43.34 | 5.19 |
1174 | 1230 | 0.035176 | GCATTTCAGCCAAAAGGCCA | 59.965 | 50.000 | 5.01 | 0.00 | 39.37 | 5.36 |
1175 | 1231 | 1.542987 | GCATTTCAGCCAAAAGGCCAA | 60.543 | 47.619 | 5.01 | 0.00 | 39.37 | 4.52 |
1176 | 1232 | 2.848691 | CATTTCAGCCAAAAGGCCAAA | 58.151 | 42.857 | 5.01 | 3.52 | 35.12 | 3.28 |
1177 | 1233 | 3.212685 | CATTTCAGCCAAAAGGCCAAAA | 58.787 | 40.909 | 5.01 | 4.80 | 35.12 | 2.44 |
1178 | 1234 | 3.574354 | TTTCAGCCAAAAGGCCAAAAT | 57.426 | 38.095 | 5.01 | 0.00 | 35.12 | 1.82 |
1179 | 1235 | 4.696479 | TTTCAGCCAAAAGGCCAAAATA | 57.304 | 36.364 | 5.01 | 0.00 | 35.12 | 1.40 |
1180 | 1236 | 4.906747 | TTCAGCCAAAAGGCCAAAATAT | 57.093 | 36.364 | 5.01 | 0.00 | 35.12 | 1.28 |
1181 | 1237 | 4.906747 | TCAGCCAAAAGGCCAAAATATT | 57.093 | 36.364 | 5.01 | 0.00 | 35.12 | 1.28 |
1182 | 1238 | 4.831107 | TCAGCCAAAAGGCCAAAATATTC | 58.169 | 39.130 | 5.01 | 0.00 | 35.12 | 1.75 |
1183 | 1239 | 4.285517 | TCAGCCAAAAGGCCAAAATATTCA | 59.714 | 37.500 | 5.01 | 0.00 | 35.12 | 2.57 |
1184 | 1240 | 5.045724 | TCAGCCAAAAGGCCAAAATATTCAT | 60.046 | 36.000 | 5.01 | 0.00 | 35.12 | 2.57 |
1185 | 1241 | 5.648960 | CAGCCAAAAGGCCAAAATATTCATT | 59.351 | 36.000 | 5.01 | 0.00 | 35.12 | 2.57 |
1186 | 1242 | 6.151480 | CAGCCAAAAGGCCAAAATATTCATTT | 59.849 | 34.615 | 5.01 | 0.00 | 34.02 | 2.32 |
1187 | 1243 | 6.151480 | AGCCAAAAGGCCAAAATATTCATTTG | 59.849 | 34.615 | 5.01 | 0.67 | 37.48 | 2.32 |
1188 | 1244 | 6.150809 | GCCAAAAGGCCAAAATATTCATTTGA | 59.849 | 34.615 | 5.01 | 0.00 | 39.56 | 2.69 |
1189 | 1245 | 7.309073 | GCCAAAAGGCCAAAATATTCATTTGAA | 60.309 | 33.333 | 5.01 | 0.00 | 39.56 | 2.69 |
1190 | 1246 | 8.741841 | CCAAAAGGCCAAAATATTCATTTGAAT | 58.258 | 29.630 | 5.01 | 10.42 | 45.77 | 2.57 |
1262 | 1318 | 8.236586 | TGATTTCATGTGTACTACTGAATTTGC | 58.763 | 33.333 | 0.00 | 0.00 | 31.34 | 3.68 |
1263 | 1319 | 7.744087 | TTTCATGTGTACTACTGAATTTGCT | 57.256 | 32.000 | 0.00 | 0.00 | 31.34 | 3.91 |
1264 | 1320 | 6.726258 | TCATGTGTACTACTGAATTTGCTG | 57.274 | 37.500 | 0.00 | 0.00 | 0.00 | 4.41 |
1265 | 1321 | 6.463360 | TCATGTGTACTACTGAATTTGCTGA | 58.537 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1266 | 1322 | 6.934083 | TCATGTGTACTACTGAATTTGCTGAA | 59.066 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
1267 | 1323 | 7.443879 | TCATGTGTACTACTGAATTTGCTGAAA | 59.556 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
1268 | 1324 | 7.744087 | TGTGTACTACTGAATTTGCTGAAAT | 57.256 | 32.000 | 0.00 | 0.00 | 32.87 | 2.17 |
1269 | 1325 | 8.840833 | TGTGTACTACTGAATTTGCTGAAATA | 57.159 | 30.769 | 0.00 | 0.00 | 31.18 | 1.40 |
1270 | 1326 | 9.448438 | TGTGTACTACTGAATTTGCTGAAATAT | 57.552 | 29.630 | 0.00 | 0.00 | 31.18 | 1.28 |
1277 | 1333 | 8.538409 | ACTGAATTTGCTGAAATATTTTGACC | 57.462 | 30.769 | 1.43 | 0.00 | 31.18 | 4.02 |
1278 | 1334 | 7.329226 | ACTGAATTTGCTGAAATATTTTGACCG | 59.671 | 33.333 | 1.43 | 0.00 | 31.18 | 4.79 |
1279 | 1335 | 7.374272 | TGAATTTGCTGAAATATTTTGACCGA | 58.626 | 30.769 | 1.43 | 0.00 | 31.18 | 4.69 |
1280 | 1336 | 7.869937 | TGAATTTGCTGAAATATTTTGACCGAA | 59.130 | 29.630 | 1.43 | 0.00 | 31.18 | 4.30 |
1281 | 1337 | 8.600449 | AATTTGCTGAAATATTTTGACCGAAA | 57.400 | 26.923 | 1.43 | 0.00 | 31.18 | 3.46 |
1282 | 1338 | 7.401484 | TTTGCTGAAATATTTTGACCGAAAC | 57.599 | 32.000 | 1.43 | 0.00 | 0.00 | 2.78 |
1283 | 1339 | 6.078202 | TGCTGAAATATTTTGACCGAAACA | 57.922 | 33.333 | 1.43 | 0.00 | 0.00 | 2.83 |
1284 | 1340 | 6.686630 | TGCTGAAATATTTTGACCGAAACAT | 58.313 | 32.000 | 1.43 | 0.00 | 0.00 | 2.71 |
1285 | 1341 | 7.821652 | TGCTGAAATATTTTGACCGAAACATA | 58.178 | 30.769 | 1.43 | 0.00 | 0.00 | 2.29 |
1286 | 1342 | 8.300286 | TGCTGAAATATTTTGACCGAAACATAA | 58.700 | 29.630 | 1.43 | 0.00 | 0.00 | 1.90 |
1287 | 1343 | 9.301153 | GCTGAAATATTTTGACCGAAACATAAT | 57.699 | 29.630 | 1.43 | 0.00 | 0.00 | 1.28 |
1296 | 1352 | 9.619316 | TTTTGACCGAAACATAATATTTCAGTG | 57.381 | 29.630 | 0.00 | 0.00 | 36.09 | 3.66 |
1297 | 1353 | 7.915293 | TGACCGAAACATAATATTTCAGTGT | 57.085 | 32.000 | 0.00 | 0.00 | 36.09 | 3.55 |
1298 | 1354 | 7.970384 | TGACCGAAACATAATATTTCAGTGTC | 58.030 | 34.615 | 0.00 | 0.00 | 36.09 | 3.67 |
1299 | 1355 | 7.822334 | TGACCGAAACATAATATTTCAGTGTCT | 59.178 | 33.333 | 0.00 | 0.00 | 36.09 | 3.41 |
1300 | 1356 | 9.309516 | GACCGAAACATAATATTTCAGTGTCTA | 57.690 | 33.333 | 0.00 | 0.00 | 36.09 | 2.59 |
1301 | 1357 | 9.095065 | ACCGAAACATAATATTTCAGTGTCTAC | 57.905 | 33.333 | 0.00 | 0.00 | 36.09 | 2.59 |
1302 | 1358 | 9.314321 | CCGAAACATAATATTTCAGTGTCTACT | 57.686 | 33.333 | 0.00 | 0.00 | 36.09 | 2.57 |
1617 | 1702 | 1.269998 | CGACCACGACTTTCTCCTCTT | 59.730 | 52.381 | 0.00 | 0.00 | 42.66 | 2.85 |
1702 | 1828 | 4.683781 | TCGTTTTGATTTGTTAGGCATTGC | 59.316 | 37.500 | 0.00 | 0.00 | 0.00 | 3.56 |
1719 | 1845 | 5.207768 | GCATTGCCTATATGTTCTGTTTCG | 58.792 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
1761 | 1905 | 2.422597 | TGTGTACCTTTCATTGCGGAG | 58.577 | 47.619 | 0.00 | 0.00 | 0.00 | 4.63 |
1777 | 1922 | 7.389330 | TCATTGCGGAGAAGTTCTGTAAATTTA | 59.611 | 33.333 | 10.90 | 0.00 | 39.71 | 1.40 |
1829 | 2214 | 4.018490 | TGTGCTGTGCTATGGAATCAAAT | 58.982 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
1862 | 2410 | 3.940209 | TGTGGTTTCTGATTTGATGCC | 57.060 | 42.857 | 0.00 | 0.00 | 0.00 | 4.40 |
1863 | 2411 | 2.228582 | TGTGGTTTCTGATTTGATGCCG | 59.771 | 45.455 | 0.00 | 0.00 | 0.00 | 5.69 |
1865 | 2413 | 2.487762 | TGGTTTCTGATTTGATGCCGAC | 59.512 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
1868 | 2416 | 1.372582 | TCTGATTTGATGCCGACAGC | 58.627 | 50.000 | 0.00 | 0.00 | 44.14 | 4.40 |
1881 | 2430 | 2.998668 | CGACAGCGGCTTTTAGTATG | 57.001 | 50.000 | 0.00 | 0.00 | 0.00 | 2.39 |
1882 | 2431 | 2.268298 | CGACAGCGGCTTTTAGTATGT | 58.732 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
1884 | 2434 | 2.268298 | ACAGCGGCTTTTAGTATGTCG | 58.732 | 47.619 | 0.00 | 0.00 | 32.69 | 4.35 |
1891 | 2441 | 6.758593 | CGGCTTTTAGTATGTCGCTTTATA | 57.241 | 37.500 | 0.00 | 0.00 | 0.00 | 0.98 |
2008 | 2715 | 4.946478 | AGCGCTAGAGAAAACCTATCAT | 57.054 | 40.909 | 8.99 | 0.00 | 0.00 | 2.45 |
2022 | 2733 | 5.636903 | ACCTATCATTGTGCATTACTCCT | 57.363 | 39.130 | 0.00 | 0.00 | 0.00 | 3.69 |
2208 | 3267 | 5.643379 | TGGCTTGCCAACTAAGAATTAAG | 57.357 | 39.130 | 12.40 | 0.00 | 0.00 | 1.85 |
2251 | 3310 | 2.040012 | TGGTTTGTTAATACAGCGGGGA | 59.960 | 45.455 | 0.00 | 0.00 | 35.28 | 4.81 |
2252 | 3311 | 3.083293 | GGTTTGTTAATACAGCGGGGAA | 58.917 | 45.455 | 0.00 | 0.00 | 35.28 | 3.97 |
2342 | 3406 | 4.015872 | TCCAGTGAAACAGTCCCATTAC | 57.984 | 45.455 | 0.00 | 0.00 | 41.43 | 1.89 |
2553 | 3637 | 6.136857 | AGTATGTACCTGTGTCCTATGATGT | 58.863 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2561 | 3651 | 4.129380 | TGTGTCCTATGATGTTATGCAGC | 58.871 | 43.478 | 0.00 | 0.00 | 0.00 | 5.25 |
2729 | 3853 | 3.963428 | GGCACCTTCTCTTAAGAGTCA | 57.037 | 47.619 | 27.59 | 16.67 | 42.60 | 3.41 |
2757 | 3884 | 7.571983 | CGCCTCATTTCTCGCTATAATTTTGAT | 60.572 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
2879 | 4012 | 1.808531 | GCATGCCCACAACTGAAGCA | 61.809 | 55.000 | 6.36 | 0.00 | 37.94 | 3.91 |
2920 | 4053 | 6.348540 | GGACGTGTTCTATGATTTTGAAGCTT | 60.349 | 38.462 | 0.00 | 0.00 | 0.00 | 3.74 |
2960 | 4093 | 1.125633 | GAAGCCATGGGGATTGCAAT | 58.874 | 50.000 | 12.83 | 12.83 | 44.43 | 3.56 |
3183 | 4316 | 0.881118 | TGAGAGGGCAATTTGTTCGC | 59.119 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
3336 | 4481 | 2.743664 | TCGGCAAACATCTGACAGAATG | 59.256 | 45.455 | 9.70 | 10.64 | 46.00 | 2.67 |
3388 | 4533 | 5.450137 | GGTGATCTTTCTGCCATTGAGAATG | 60.450 | 44.000 | 0.00 | 0.00 | 38.63 | 2.67 |
3494 | 4641 | 2.163010 | GCACAACATGGAGAACAGGATG | 59.837 | 50.000 | 0.00 | 0.00 | 46.00 | 3.51 |
3580 | 4727 | 4.232221 | GTCCAAGAAAATGCAGTGACATG | 58.768 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
3746 | 4893 | 6.625873 | ACTGAAGAAAACAAAGTGAGGATC | 57.374 | 37.500 | 0.00 | 0.00 | 0.00 | 3.36 |
3749 | 4896 | 3.412386 | AGAAAACAAAGTGAGGATCGGG | 58.588 | 45.455 | 0.00 | 0.00 | 38.61 | 5.14 |
3900 | 5047 | 1.508632 | TGCGGTGAAGCAACTAGTTC | 58.491 | 50.000 | 4.77 | 1.12 | 45.06 | 3.01 |
3905 | 5052 | 3.614150 | CGGTGAAGCAACTAGTTCAGCTA | 60.614 | 47.826 | 17.93 | 4.13 | 45.05 | 3.32 |
3926 | 5073 | 5.513788 | GCTAATGGATCCTGCTCTTGGAATA | 60.514 | 44.000 | 14.23 | 0.00 | 37.13 | 1.75 |
3931 | 5078 | 1.209504 | TCCTGCTCTTGGAATAACCGG | 59.790 | 52.381 | 0.00 | 0.00 | 42.61 | 5.28 |
3941 | 5088 | 1.544246 | GGAATAACCGGCAAAGCTGTT | 59.456 | 47.619 | 0.00 | 0.00 | 32.22 | 3.16 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 0.804544 | CTGCCTACGAAATTCGCGGA | 60.805 | 55.000 | 22.63 | 0.00 | 45.12 | 5.54 |
1 | 2 | 0.804544 | TCTGCCTACGAAATTCGCGG | 60.805 | 55.000 | 15.90 | 16.32 | 45.12 | 6.46 |
2 | 3 | 0.996462 | TTCTGCCTACGAAATTCGCG | 59.004 | 50.000 | 15.90 | 0.00 | 45.12 | 5.87 |
3 | 4 | 1.267582 | GCTTCTGCCTACGAAATTCGC | 60.268 | 52.381 | 15.90 | 0.00 | 45.12 | 4.70 |
4 | 5 | 1.999735 | TGCTTCTGCCTACGAAATTCG | 59.000 | 47.619 | 14.35 | 14.35 | 41.56 | 3.34 |
5 | 6 | 4.159120 | GTTTGCTTCTGCCTACGAAATTC | 58.841 | 43.478 | 0.00 | 0.00 | 38.71 | 2.17 |
6 | 7 | 3.568007 | TGTTTGCTTCTGCCTACGAAATT | 59.432 | 39.130 | 0.00 | 0.00 | 38.71 | 1.82 |
7 | 8 | 3.146066 | TGTTTGCTTCTGCCTACGAAAT | 58.854 | 40.909 | 0.00 | 0.00 | 38.71 | 2.17 |
8 | 9 | 2.548057 | CTGTTTGCTTCTGCCTACGAAA | 59.452 | 45.455 | 0.00 | 0.00 | 38.71 | 3.46 |
9 | 10 | 2.143122 | CTGTTTGCTTCTGCCTACGAA | 58.857 | 47.619 | 0.00 | 0.00 | 38.71 | 3.85 |
10 | 11 | 1.608025 | CCTGTTTGCTTCTGCCTACGA | 60.608 | 52.381 | 0.00 | 0.00 | 38.71 | 3.43 |
11 | 12 | 0.798776 | CCTGTTTGCTTCTGCCTACG | 59.201 | 55.000 | 0.00 | 0.00 | 38.71 | 3.51 |
12 | 13 | 2.079925 | CTCCTGTTTGCTTCTGCCTAC | 58.920 | 52.381 | 0.00 | 0.00 | 38.71 | 3.18 |
13 | 14 | 1.003580 | CCTCCTGTTTGCTTCTGCCTA | 59.996 | 52.381 | 0.00 | 0.00 | 38.71 | 3.93 |
14 | 15 | 0.251077 | CCTCCTGTTTGCTTCTGCCT | 60.251 | 55.000 | 0.00 | 0.00 | 38.71 | 4.75 |
15 | 16 | 1.871126 | GCCTCCTGTTTGCTTCTGCC | 61.871 | 60.000 | 0.00 | 0.00 | 38.71 | 4.85 |
16 | 17 | 1.174712 | TGCCTCCTGTTTGCTTCTGC | 61.175 | 55.000 | 0.00 | 0.00 | 40.20 | 4.26 |
17 | 18 | 1.321474 | TTGCCTCCTGTTTGCTTCTG | 58.679 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
18 | 19 | 2.071778 | TTTGCCTCCTGTTTGCTTCT | 57.928 | 45.000 | 0.00 | 0.00 | 0.00 | 2.85 |
19 | 20 | 2.747436 | CTTTTGCCTCCTGTTTGCTTC | 58.253 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
20 | 21 | 1.202568 | GCTTTTGCCTCCTGTTTGCTT | 60.203 | 47.619 | 0.00 | 0.00 | 40.15 | 3.91 |
21 | 22 | 0.390492 | GCTTTTGCCTCCTGTTTGCT | 59.610 | 50.000 | 0.00 | 0.00 | 40.15 | 3.91 |
22 | 23 | 0.104671 | TGCTTTTGCCTCCTGTTTGC | 59.895 | 50.000 | 0.00 | 0.00 | 46.87 | 3.68 |
23 | 24 | 1.136695 | TGTGCTTTTGCCTCCTGTTTG | 59.863 | 47.619 | 0.00 | 0.00 | 46.87 | 2.93 |
24 | 25 | 1.484038 | TGTGCTTTTGCCTCCTGTTT | 58.516 | 45.000 | 0.00 | 0.00 | 46.87 | 2.83 |
25 | 26 | 1.708341 | ATGTGCTTTTGCCTCCTGTT | 58.292 | 45.000 | 0.00 | 0.00 | 46.87 | 3.16 |
26 | 27 | 1.342174 | CAATGTGCTTTTGCCTCCTGT | 59.658 | 47.619 | 0.00 | 0.00 | 46.87 | 4.00 |
27 | 28 | 1.938016 | GCAATGTGCTTTTGCCTCCTG | 60.938 | 52.381 | 7.36 | 0.00 | 46.87 | 3.86 |
28 | 29 | 0.319405 | GCAATGTGCTTTTGCCTCCT | 59.681 | 50.000 | 7.36 | 0.00 | 46.87 | 3.69 |
29 | 30 | 1.010419 | CGCAATGTGCTTTTGCCTCC | 61.010 | 55.000 | 11.45 | 0.00 | 45.19 | 4.30 |
30 | 31 | 1.620413 | GCGCAATGTGCTTTTGCCTC | 61.620 | 55.000 | 12.00 | 3.09 | 45.19 | 4.70 |
31 | 32 | 1.665599 | GCGCAATGTGCTTTTGCCT | 60.666 | 52.632 | 12.00 | 0.00 | 45.19 | 4.75 |
32 | 33 | 1.293267 | ATGCGCAATGTGCTTTTGCC | 61.293 | 50.000 | 17.11 | 0.00 | 45.19 | 4.52 |
33 | 34 | 0.179235 | CATGCGCAATGTGCTTTTGC | 60.179 | 50.000 | 17.11 | 2.92 | 42.25 | 3.68 |
34 | 35 | 0.440758 | CCATGCGCAATGTGCTTTTG | 59.559 | 50.000 | 17.11 | 13.62 | 42.25 | 2.44 |
35 | 36 | 1.293267 | GCCATGCGCAATGTGCTTTT | 61.293 | 50.000 | 17.11 | 2.15 | 42.25 | 2.27 |
36 | 37 | 1.738830 | GCCATGCGCAATGTGCTTT | 60.739 | 52.632 | 17.11 | 4.71 | 42.25 | 3.51 |
37 | 38 | 2.125832 | GCCATGCGCAATGTGCTT | 60.126 | 55.556 | 17.11 | 10.87 | 42.25 | 3.91 |
47 | 48 | 3.350909 | ATGCACTTGCTGCCATGCG | 62.351 | 57.895 | 13.04 | 0.00 | 46.51 | 4.73 |
48 | 49 | 1.809619 | CATGCACTTGCTGCCATGC | 60.810 | 57.895 | 11.55 | 11.55 | 46.51 | 4.06 |
49 | 50 | 0.245266 | TTCATGCACTTGCTGCCATG | 59.755 | 50.000 | 8.84 | 8.84 | 46.51 | 3.66 |
50 | 51 | 0.970640 | TTTCATGCACTTGCTGCCAT | 59.029 | 45.000 | 2.33 | 0.00 | 46.51 | 4.40 |
82 | 83 | 1.135024 | CACAGGGCGCAATATGCTTTT | 60.135 | 47.619 | 10.83 | 0.00 | 42.25 | 2.27 |
100 | 101 | 6.578545 | GTGTTGTTGAATGATGTACATGTCAC | 59.421 | 38.462 | 14.43 | 8.97 | 39.39 | 3.67 |
138 | 139 | 0.753262 | GGTGACGCTGGTCTGGATAT | 59.247 | 55.000 | 0.00 | 0.00 | 43.79 | 1.63 |
181 | 220 | 1.633774 | ATGACCACCTTGTCTCGAGT | 58.366 | 50.000 | 13.13 | 0.00 | 36.21 | 4.18 |
188 | 227 | 1.795170 | GCGCACAATGACCACCTTGT | 61.795 | 55.000 | 0.30 | 0.00 | 35.80 | 3.16 |
197 | 236 | 3.004315 | TCATACTCTATCGCGCACAATGA | 59.996 | 43.478 | 8.75 | 0.00 | 0.00 | 2.57 |
215 | 254 | 6.769512 | AGGAAGCAGAACTTACAAACTCATA | 58.230 | 36.000 | 0.00 | 0.00 | 42.32 | 2.15 |
217 | 256 | 5.036117 | AGGAAGCAGAACTTACAAACTCA | 57.964 | 39.130 | 0.00 | 0.00 | 42.32 | 3.41 |
221 | 260 | 4.275936 | GCAAGAGGAAGCAGAACTTACAAA | 59.724 | 41.667 | 0.00 | 0.00 | 42.32 | 2.83 |
231 | 271 | 2.181954 | AGTTGAGCAAGAGGAAGCAG | 57.818 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
314 | 357 | 2.423088 | CGGTCCTCTGTCCTATGGTACT | 60.423 | 54.545 | 0.00 | 0.00 | 0.00 | 2.73 |
333 | 376 | 1.076533 | GTGTGCACGTAGATGGTCGG | 61.077 | 60.000 | 13.13 | 0.00 | 0.00 | 4.79 |
347 | 390 | 1.308047 | TCATCCAACAGTGTGTGTGC | 58.692 | 50.000 | 0.00 | 0.00 | 40.26 | 4.57 |
348 | 391 | 2.287188 | GCTTCATCCAACAGTGTGTGTG | 60.287 | 50.000 | 0.00 | 0.00 | 40.26 | 3.82 |
375 | 418 | 1.549170 | GTCGTTCCACACATACTCCCT | 59.451 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
403 | 446 | 8.023128 | CGGATGTCTAACAAGTTTTTCATCAAT | 58.977 | 33.333 | 16.99 | 0.00 | 34.17 | 2.57 |
421 | 465 | 3.210232 | TCGACTAGATTCCGGATGTCT | 57.790 | 47.619 | 19.94 | 19.94 | 0.00 | 3.41 |
449 | 495 | 8.687824 | ACAAATTAAGCATAGTACAACAATGC | 57.312 | 30.769 | 12.08 | 12.08 | 45.02 | 3.56 |
464 | 510 | 9.778993 | CATCCATACATAGCATACAAATTAAGC | 57.221 | 33.333 | 0.00 | 0.00 | 0.00 | 3.09 |
474 | 521 | 5.473162 | GCACAAACCATCCATACATAGCATA | 59.527 | 40.000 | 0.00 | 0.00 | 0.00 | 3.14 |
520 | 567 | 6.884096 | TTCATGCAAAACGGCTTATATTTG | 57.116 | 33.333 | 0.00 | 0.00 | 36.19 | 2.32 |
585 | 632 | 2.437002 | GCCGCCATCCAACCGTAA | 60.437 | 61.111 | 0.00 | 0.00 | 0.00 | 3.18 |
635 | 682 | 0.462375 | CCCACATCCGTCCACGAATA | 59.538 | 55.000 | 0.00 | 0.00 | 43.02 | 1.75 |
636 | 683 | 1.220749 | CCCACATCCGTCCACGAAT | 59.779 | 57.895 | 0.00 | 0.00 | 43.02 | 3.34 |
638 | 685 | 2.283316 | TCCCACATCCGTCCACGA | 60.283 | 61.111 | 0.00 | 0.00 | 43.02 | 4.35 |
682 | 731 | 0.999406 | CACAACGAGTAAGGGCATCG | 59.001 | 55.000 | 0.00 | 0.00 | 42.04 | 3.84 |
684 | 733 | 2.552315 | CAAACACAACGAGTAAGGGCAT | 59.448 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
685 | 734 | 1.944024 | CAAACACAACGAGTAAGGGCA | 59.056 | 47.619 | 0.00 | 0.00 | 0.00 | 5.36 |
686 | 735 | 1.265905 | CCAAACACAACGAGTAAGGGC | 59.734 | 52.381 | 0.00 | 0.00 | 0.00 | 5.19 |
687 | 736 | 2.546789 | GTCCAAACACAACGAGTAAGGG | 59.453 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
688 | 737 | 3.199677 | TGTCCAAACACAACGAGTAAGG | 58.800 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
706 | 755 | 3.057734 | ACTTTCGAGAAATGGACGTGTC | 58.942 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
707 | 756 | 3.107642 | ACTTTCGAGAAATGGACGTGT | 57.892 | 42.857 | 0.00 | 0.00 | 0.00 | 4.49 |
708 | 757 | 5.779806 | AATACTTTCGAGAAATGGACGTG | 57.220 | 39.130 | 0.00 | 0.00 | 0.00 | 4.49 |
709 | 758 | 6.425721 | TGAAAATACTTTCGAGAAATGGACGT | 59.574 | 34.615 | 0.00 | 0.00 | 43.40 | 4.34 |
710 | 759 | 6.827641 | TGAAAATACTTTCGAGAAATGGACG | 58.172 | 36.000 | 0.00 | 0.00 | 43.40 | 4.79 |
711 | 760 | 7.958025 | GTCTGAAAATACTTTCGAGAAATGGAC | 59.042 | 37.037 | 0.00 | 0.00 | 43.40 | 4.02 |
712 | 761 | 7.148639 | CGTCTGAAAATACTTTCGAGAAATGGA | 60.149 | 37.037 | 0.00 | 0.00 | 43.40 | 3.41 |
713 | 762 | 6.955963 | CGTCTGAAAATACTTTCGAGAAATGG | 59.044 | 38.462 | 0.00 | 0.00 | 43.40 | 3.16 |
714 | 763 | 6.955963 | CCGTCTGAAAATACTTTCGAGAAATG | 59.044 | 38.462 | 0.00 | 0.00 | 43.40 | 2.32 |
715 | 764 | 6.872020 | TCCGTCTGAAAATACTTTCGAGAAAT | 59.128 | 34.615 | 0.00 | 0.00 | 43.40 | 2.17 |
716 | 765 | 6.218019 | TCCGTCTGAAAATACTTTCGAGAAA | 58.782 | 36.000 | 0.00 | 0.00 | 43.40 | 2.52 |
717 | 766 | 5.775686 | TCCGTCTGAAAATACTTTCGAGAA | 58.224 | 37.500 | 0.00 | 0.00 | 43.40 | 2.87 |
718 | 767 | 5.381174 | TCCGTCTGAAAATACTTTCGAGA | 57.619 | 39.130 | 0.00 | 0.00 | 43.40 | 4.04 |
719 | 768 | 4.563184 | CCTCCGTCTGAAAATACTTTCGAG | 59.437 | 45.833 | 0.00 | 0.00 | 43.40 | 4.04 |
720 | 769 | 4.491676 | CCTCCGTCTGAAAATACTTTCGA | 58.508 | 43.478 | 0.00 | 0.00 | 43.40 | 3.71 |
721 | 770 | 3.617263 | CCCTCCGTCTGAAAATACTTTCG | 59.383 | 47.826 | 0.00 | 0.00 | 43.40 | 3.46 |
722 | 771 | 4.828829 | TCCCTCCGTCTGAAAATACTTTC | 58.171 | 43.478 | 0.00 | 0.00 | 41.25 | 2.62 |
723 | 772 | 4.903045 | TCCCTCCGTCTGAAAATACTTT | 57.097 | 40.909 | 0.00 | 0.00 | 0.00 | 2.66 |
724 | 773 | 4.903045 | TTCCCTCCGTCTGAAAATACTT | 57.097 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
725 | 774 | 5.437191 | AATTCCCTCCGTCTGAAAATACT | 57.563 | 39.130 | 0.00 | 0.00 | 0.00 | 2.12 |
726 | 775 | 6.510879 | AAAATTCCCTCCGTCTGAAAATAC | 57.489 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
747 | 796 | 3.543680 | TGCACAAAAATCCCCGAAAAA | 57.456 | 38.095 | 0.00 | 0.00 | 0.00 | 1.94 |
748 | 797 | 3.543680 | TTGCACAAAAATCCCCGAAAA | 57.456 | 38.095 | 0.00 | 0.00 | 0.00 | 2.29 |
749 | 798 | 3.543680 | TTTGCACAAAAATCCCCGAAA | 57.456 | 38.095 | 0.00 | 0.00 | 0.00 | 3.46 |
750 | 799 | 3.543680 | TTTTGCACAAAAATCCCCGAA | 57.456 | 38.095 | 6.09 | 0.00 | 37.35 | 4.30 |
751 | 800 | 3.760580 | ATTTTGCACAAAAATCCCCGA | 57.239 | 38.095 | 12.17 | 0.00 | 43.57 | 5.14 |
752 | 801 | 4.565022 | ACTATTTTGCACAAAAATCCCCG | 58.435 | 39.130 | 12.17 | 1.76 | 43.57 | 5.73 |
753 | 802 | 4.625311 | CGACTATTTTGCACAAAAATCCCC | 59.375 | 41.667 | 12.17 | 1.95 | 43.57 | 4.81 |
754 | 803 | 5.465935 | TCGACTATTTTGCACAAAAATCCC | 58.534 | 37.500 | 12.17 | 3.12 | 43.57 | 3.85 |
755 | 804 | 7.581011 | ATTCGACTATTTTGCACAAAAATCC | 57.419 | 32.000 | 12.17 | 2.82 | 43.57 | 3.01 |
775 | 824 | 1.024579 | CGGTTCAGGTGGGGAATTCG | 61.025 | 60.000 | 0.00 | 0.00 | 0.00 | 3.34 |
776 | 825 | 0.679960 | CCGGTTCAGGTGGGGAATTC | 60.680 | 60.000 | 0.00 | 0.00 | 0.00 | 2.17 |
794 | 843 | 1.078356 | GGGAAAGGAGCGAGGAACC | 60.078 | 63.158 | 0.00 | 0.00 | 0.00 | 3.62 |
1031 | 1087 | 1.648568 | AGTTCCTCATCTCCTCCTCCA | 59.351 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
1066 | 1122 | 5.130145 | ACTGAAATTGAAAACCATGGTCCAA | 59.870 | 36.000 | 20.07 | 21.16 | 0.00 | 3.53 |
1067 | 1123 | 4.653341 | ACTGAAATTGAAAACCATGGTCCA | 59.347 | 37.500 | 20.07 | 13.79 | 0.00 | 4.02 |
1068 | 1124 | 5.213891 | ACTGAAATTGAAAACCATGGTCC | 57.786 | 39.130 | 20.07 | 11.20 | 0.00 | 4.46 |
1069 | 1125 | 6.760770 | TGAAACTGAAATTGAAAACCATGGTC | 59.239 | 34.615 | 20.07 | 6.47 | 0.00 | 4.02 |
1070 | 1126 | 6.648192 | TGAAACTGAAATTGAAAACCATGGT | 58.352 | 32.000 | 13.00 | 13.00 | 0.00 | 3.55 |
1071 | 1127 | 7.065563 | TGTTGAAACTGAAATTGAAAACCATGG | 59.934 | 33.333 | 11.19 | 11.19 | 0.00 | 3.66 |
1072 | 1128 | 7.972527 | TGTTGAAACTGAAATTGAAAACCATG | 58.027 | 30.769 | 0.00 | 0.00 | 0.00 | 3.66 |
1073 | 1129 | 8.558973 | TTGTTGAAACTGAAATTGAAAACCAT | 57.441 | 26.923 | 0.00 | 0.00 | 0.00 | 3.55 |
1074 | 1130 | 7.969536 | TTGTTGAAACTGAAATTGAAAACCA | 57.030 | 28.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1075 | 1131 | 9.838975 | ATTTTGTTGAAACTGAAATTGAAAACC | 57.161 | 25.926 | 0.00 | 0.00 | 0.00 | 3.27 |
1081 | 1137 | 9.002080 | GCTGAAATTTTGTTGAAACTGAAATTG | 57.998 | 29.630 | 15.20 | 8.85 | 36.47 | 2.32 |
1082 | 1138 | 8.728833 | TGCTGAAATTTTGTTGAAACTGAAATT | 58.271 | 25.926 | 11.56 | 11.56 | 37.16 | 1.82 |
1083 | 1139 | 8.177013 | GTGCTGAAATTTTGTTGAAACTGAAAT | 58.823 | 29.630 | 0.00 | 0.00 | 31.55 | 2.17 |
1084 | 1140 | 7.360776 | GGTGCTGAAATTTTGTTGAAACTGAAA | 60.361 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
1085 | 1141 | 6.091986 | GGTGCTGAAATTTTGTTGAAACTGAA | 59.908 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
1086 | 1142 | 5.580297 | GGTGCTGAAATTTTGTTGAAACTGA | 59.420 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1087 | 1143 | 5.350914 | TGGTGCTGAAATTTTGTTGAAACTG | 59.649 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1088 | 1144 | 5.486526 | TGGTGCTGAAATTTTGTTGAAACT | 58.513 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
1089 | 1145 | 5.793026 | TGGTGCTGAAATTTTGTTGAAAC | 57.207 | 34.783 | 0.00 | 0.00 | 0.00 | 2.78 |
1090 | 1146 | 5.936956 | AGTTGGTGCTGAAATTTTGTTGAAA | 59.063 | 32.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1091 | 1147 | 5.350914 | CAGTTGGTGCTGAAATTTTGTTGAA | 59.649 | 36.000 | 0.00 | 0.00 | 38.70 | 2.69 |
1092 | 1148 | 4.869297 | CAGTTGGTGCTGAAATTTTGTTGA | 59.131 | 37.500 | 0.00 | 0.00 | 38.70 | 3.18 |
1093 | 1149 | 4.869297 | TCAGTTGGTGCTGAAATTTTGTTG | 59.131 | 37.500 | 0.00 | 0.00 | 41.93 | 3.33 |
1094 | 1150 | 5.083533 | TCAGTTGGTGCTGAAATTTTGTT | 57.916 | 34.783 | 0.00 | 0.00 | 41.93 | 2.83 |
1095 | 1151 | 4.734398 | TCAGTTGGTGCTGAAATTTTGT | 57.266 | 36.364 | 0.00 | 0.00 | 41.93 | 2.83 |
1103 | 1159 | 2.880268 | CAGTGATTTCAGTTGGTGCTGA | 59.120 | 45.455 | 0.00 | 0.00 | 43.03 | 4.26 |
1104 | 1160 | 2.880268 | TCAGTGATTTCAGTTGGTGCTG | 59.120 | 45.455 | 0.00 | 0.00 | 37.81 | 4.41 |
1105 | 1161 | 3.213206 | TCAGTGATTTCAGTTGGTGCT | 57.787 | 42.857 | 0.00 | 0.00 | 0.00 | 4.40 |
1106 | 1162 | 3.988379 | TTCAGTGATTTCAGTTGGTGC | 57.012 | 42.857 | 0.00 | 0.00 | 0.00 | 5.01 |
1107 | 1163 | 6.506147 | TGAATTTCAGTGATTTCAGTTGGTG | 58.494 | 36.000 | 12.59 | 0.00 | 0.00 | 4.17 |
1108 | 1164 | 6.713762 | TGAATTTCAGTGATTTCAGTTGGT | 57.286 | 33.333 | 12.59 | 0.00 | 0.00 | 3.67 |
1138 | 1194 | 8.977505 | GCTGAAATGCAAACTGAAATAACTAAA | 58.022 | 29.630 | 0.00 | 0.00 | 0.00 | 1.85 |
1139 | 1195 | 7.598493 | GGCTGAAATGCAAACTGAAATAACTAA | 59.402 | 33.333 | 0.00 | 0.00 | 34.04 | 2.24 |
1140 | 1196 | 7.090173 | GGCTGAAATGCAAACTGAAATAACTA | 58.910 | 34.615 | 0.00 | 0.00 | 34.04 | 2.24 |
1141 | 1197 | 5.928264 | GGCTGAAATGCAAACTGAAATAACT | 59.072 | 36.000 | 0.00 | 0.00 | 34.04 | 2.24 |
1142 | 1198 | 5.695816 | TGGCTGAAATGCAAACTGAAATAAC | 59.304 | 36.000 | 0.00 | 0.00 | 34.04 | 1.89 |
1143 | 1199 | 5.851720 | TGGCTGAAATGCAAACTGAAATAA | 58.148 | 33.333 | 0.00 | 0.00 | 34.04 | 1.40 |
1144 | 1200 | 5.465532 | TGGCTGAAATGCAAACTGAAATA | 57.534 | 34.783 | 0.00 | 0.00 | 34.04 | 1.40 |
1145 | 1201 | 4.339872 | TGGCTGAAATGCAAACTGAAAT | 57.660 | 36.364 | 0.00 | 0.00 | 34.04 | 2.17 |
1146 | 1202 | 3.815856 | TGGCTGAAATGCAAACTGAAA | 57.184 | 38.095 | 0.00 | 0.00 | 34.04 | 2.69 |
1147 | 1203 | 3.815856 | TTGGCTGAAATGCAAACTGAA | 57.184 | 38.095 | 0.00 | 0.00 | 34.04 | 3.02 |
1148 | 1204 | 3.815856 | TTTGGCTGAAATGCAAACTGA | 57.184 | 38.095 | 0.00 | 0.00 | 34.04 | 3.41 |
1149 | 1205 | 3.249080 | CCTTTTGGCTGAAATGCAAACTG | 59.751 | 43.478 | 0.00 | 0.00 | 34.04 | 3.16 |
1150 | 1206 | 3.469739 | CCTTTTGGCTGAAATGCAAACT | 58.530 | 40.909 | 0.00 | 0.00 | 34.04 | 2.66 |
1151 | 1207 | 3.883631 | CCTTTTGGCTGAAATGCAAAC | 57.116 | 42.857 | 0.00 | 0.00 | 34.04 | 2.93 |
1164 | 1220 | 7.684937 | TCAAATGAATATTTTGGCCTTTTGG | 57.315 | 32.000 | 3.32 | 0.00 | 37.22 | 3.28 |
1236 | 1292 | 8.236586 | GCAAATTCAGTAGTACACATGAAATCA | 58.763 | 33.333 | 0.00 | 0.00 | 35.47 | 2.57 |
1237 | 1293 | 8.454106 | AGCAAATTCAGTAGTACACATGAAATC | 58.546 | 33.333 | 0.00 | 0.00 | 35.47 | 2.17 |
1238 | 1294 | 8.239314 | CAGCAAATTCAGTAGTACACATGAAAT | 58.761 | 33.333 | 0.00 | 0.00 | 35.47 | 2.17 |
1239 | 1295 | 7.443879 | TCAGCAAATTCAGTAGTACACATGAAA | 59.556 | 33.333 | 0.00 | 0.00 | 35.47 | 2.69 |
1240 | 1296 | 6.934083 | TCAGCAAATTCAGTAGTACACATGAA | 59.066 | 34.615 | 0.00 | 4.62 | 36.22 | 2.57 |
1241 | 1297 | 6.463360 | TCAGCAAATTCAGTAGTACACATGA | 58.537 | 36.000 | 0.00 | 0.00 | 0.00 | 3.07 |
1242 | 1298 | 6.726258 | TCAGCAAATTCAGTAGTACACATG | 57.274 | 37.500 | 2.52 | 0.00 | 0.00 | 3.21 |
1243 | 1299 | 7.744087 | TTTCAGCAAATTCAGTAGTACACAT | 57.256 | 32.000 | 2.52 | 0.00 | 0.00 | 3.21 |
1244 | 1300 | 7.744087 | ATTTCAGCAAATTCAGTAGTACACA | 57.256 | 32.000 | 2.52 | 0.00 | 0.00 | 3.72 |
1251 | 1307 | 9.638239 | GGTCAAAATATTTCAGCAAATTCAGTA | 57.362 | 29.630 | 0.10 | 0.00 | 33.95 | 2.74 |
1252 | 1308 | 7.329226 | CGGTCAAAATATTTCAGCAAATTCAGT | 59.671 | 33.333 | 0.10 | 0.00 | 33.95 | 3.41 |
1253 | 1309 | 7.541783 | TCGGTCAAAATATTTCAGCAAATTCAG | 59.458 | 33.333 | 0.10 | 0.00 | 33.95 | 3.02 |
1254 | 1310 | 7.374272 | TCGGTCAAAATATTTCAGCAAATTCA | 58.626 | 30.769 | 0.10 | 0.00 | 33.95 | 2.57 |
1255 | 1311 | 7.810766 | TCGGTCAAAATATTTCAGCAAATTC | 57.189 | 32.000 | 0.10 | 0.00 | 33.95 | 2.17 |
1256 | 1312 | 8.495148 | GTTTCGGTCAAAATATTTCAGCAAATT | 58.505 | 29.630 | 0.10 | 0.00 | 33.95 | 1.82 |
1257 | 1313 | 7.655328 | TGTTTCGGTCAAAATATTTCAGCAAAT | 59.345 | 29.630 | 0.10 | 0.00 | 36.18 | 2.32 |
1258 | 1314 | 6.980978 | TGTTTCGGTCAAAATATTTCAGCAAA | 59.019 | 30.769 | 0.10 | 3.18 | 0.00 | 3.68 |
1259 | 1315 | 6.507900 | TGTTTCGGTCAAAATATTTCAGCAA | 58.492 | 32.000 | 0.10 | 0.00 | 0.00 | 3.91 |
1260 | 1316 | 6.078202 | TGTTTCGGTCAAAATATTTCAGCA | 57.922 | 33.333 | 0.10 | 0.00 | 0.00 | 4.41 |
1261 | 1317 | 8.682128 | TTATGTTTCGGTCAAAATATTTCAGC | 57.318 | 30.769 | 0.10 | 0.68 | 0.00 | 4.26 |
1270 | 1326 | 9.619316 | CACTGAAATATTATGTTTCGGTCAAAA | 57.381 | 29.630 | 20.78 | 0.00 | 46.73 | 2.44 |
1271 | 1327 | 8.788806 | ACACTGAAATATTATGTTTCGGTCAAA | 58.211 | 29.630 | 20.78 | 0.00 | 46.73 | 2.69 |
1272 | 1328 | 8.330466 | ACACTGAAATATTATGTTTCGGTCAA | 57.670 | 30.769 | 20.78 | 0.17 | 46.73 | 3.18 |
1273 | 1329 | 7.822334 | AGACACTGAAATATTATGTTTCGGTCA | 59.178 | 33.333 | 20.78 | 1.01 | 46.73 | 4.02 |
1274 | 1330 | 8.197988 | AGACACTGAAATATTATGTTTCGGTC | 57.802 | 34.615 | 20.78 | 18.74 | 46.73 | 4.79 |
1276 | 1332 | 9.314321 | AGTAGACACTGAAATATTATGTTTCGG | 57.686 | 33.333 | 17.71 | 17.71 | 43.98 | 4.30 |
1311 | 1367 | 9.897744 | GATTTCACTGTAATTCACTGAATTTCA | 57.102 | 29.630 | 19.72 | 18.68 | 41.64 | 2.69 |
1314 | 1370 | 9.288576 | TGAGATTTCACTGTAATTCACTGAATT | 57.711 | 29.630 | 18.76 | 18.76 | 43.49 | 2.17 |
1315 | 1371 | 8.853077 | TGAGATTTCACTGTAATTCACTGAAT | 57.147 | 30.769 | 0.00 | 0.00 | 32.17 | 2.57 |
1339 | 1395 | 4.969121 | AACGCATGGTTTTCACTTTCAGTG | 60.969 | 41.667 | 0.00 | 0.00 | 40.89 | 3.66 |
1340 | 1396 | 2.687935 | ACGCATGGTTTTCACTTTCAGT | 59.312 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
1341 | 1397 | 3.354089 | ACGCATGGTTTTCACTTTCAG | 57.646 | 42.857 | 0.00 | 0.00 | 0.00 | 3.02 |
1342 | 1398 | 3.443037 | CAACGCATGGTTTTCACTTTCA | 58.557 | 40.909 | 0.00 | 0.00 | 36.49 | 2.69 |
1343 | 1399 | 2.794350 | CCAACGCATGGTTTTCACTTTC | 59.206 | 45.455 | 0.00 | 0.00 | 44.85 | 2.62 |
1344 | 1400 | 2.820330 | CCAACGCATGGTTTTCACTTT | 58.180 | 42.857 | 0.00 | 0.00 | 44.85 | 2.66 |
1345 | 1401 | 2.507339 | CCAACGCATGGTTTTCACTT | 57.493 | 45.000 | 0.00 | 0.00 | 44.85 | 3.16 |
1617 | 1702 | 0.539669 | TTCTCACTGGTCAGCGAGGA | 60.540 | 55.000 | 13.87 | 4.84 | 37.98 | 3.71 |
1702 | 1828 | 5.424757 | TGGAACCGAAACAGAACATATAGG | 58.575 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
1719 | 1845 | 7.093509 | ACACATAAATTGTAAGGGATTGGAACC | 60.094 | 37.037 | 0.00 | 0.00 | 36.57 | 3.62 |
1777 | 1922 | 6.855763 | TTGCATGATTCCTACCAAAGAAAT | 57.144 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
1829 | 2214 | 7.815840 | TCAGAAACCACATAATTTTCAGTCA | 57.184 | 32.000 | 0.00 | 0.00 | 32.62 | 3.41 |
1862 | 2410 | 2.268298 | ACATACTAAAAGCCGCTGTCG | 58.732 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
1863 | 2411 | 2.281762 | CGACATACTAAAAGCCGCTGTC | 59.718 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1865 | 2413 | 1.004927 | GCGACATACTAAAAGCCGCTG | 60.005 | 52.381 | 0.00 | 0.00 | 38.36 | 5.18 |
1868 | 2416 | 5.652744 | ATAAAGCGACATACTAAAAGCCG | 57.347 | 39.130 | 0.00 | 0.00 | 0.00 | 5.52 |
1870 | 2418 | 9.931210 | AACATTATAAAGCGACATACTAAAAGC | 57.069 | 29.630 | 0.00 | 0.00 | 0.00 | 3.51 |
2008 | 2715 | 4.359434 | TGGTGTAAGGAGTAATGCACAA | 57.641 | 40.909 | 0.00 | 0.00 | 34.35 | 3.33 |
2022 | 2733 | 4.568072 | ACATGAAGGCAGTATGGTGTAA | 57.432 | 40.909 | 0.00 | 0.00 | 35.86 | 2.41 |
2093 | 3011 | 7.123098 | TGTCAGAATCATCCAATTACTGCAAAT | 59.877 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
2100 | 3018 | 9.512435 | CTTGAAATGTCAGAATCATCCAATTAC | 57.488 | 33.333 | 0.00 | 0.00 | 34.49 | 1.89 |
2208 | 3267 | 5.406780 | CCAATATATGAAGAACTCGGCTGAC | 59.593 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2251 | 3310 | 9.508642 | TTTCAAACCAAACCAAAGAATACTTTT | 57.491 | 25.926 | 0.00 | 0.00 | 43.41 | 2.27 |
2252 | 3311 | 8.941977 | GTTTCAAACCAAACCAAAGAATACTTT | 58.058 | 29.630 | 0.00 | 0.00 | 45.75 | 2.66 |
2342 | 3406 | 5.520376 | AACTCAAAGTCTCAAACCATTGG | 57.480 | 39.130 | 0.00 | 0.00 | 37.15 | 3.16 |
2387 | 3452 | 5.587443 | TCCAGCATATGAAATCAGTTGAGTG | 59.413 | 40.000 | 6.97 | 0.00 | 0.00 | 3.51 |
2517 | 3586 | 7.036220 | CACAGGTACATACTTAAAGAGGTCTG | 58.964 | 42.308 | 0.00 | 0.00 | 0.00 | 3.51 |
2587 | 3677 | 0.598680 | GACAGACTTGCAGAGCACGT | 60.599 | 55.000 | 0.51 | 0.51 | 43.48 | 4.49 |
2729 | 3853 | 4.521130 | TTATAGCGAGAAATGAGGCGAT | 57.479 | 40.909 | 0.00 | 0.00 | 0.00 | 4.58 |
2757 | 3884 | 7.718334 | TTTCACTATCATCTCCTTGAGTACA | 57.282 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2763 | 3896 | 6.599445 | AGGGAATTTCACTATCATCTCCTTG | 58.401 | 40.000 | 0.00 | 0.00 | 0.00 | 3.61 |
2879 | 4012 | 4.281182 | ACACGTCCTTATTCAGTCTGAAGT | 59.719 | 41.667 | 19.64 | 8.22 | 40.05 | 3.01 |
2920 | 4053 | 0.612744 | TCATCCCTGTCATTGTCGCA | 59.387 | 50.000 | 0.00 | 0.00 | 0.00 | 5.10 |
3149 | 4282 | 3.508793 | CCCTCTCATGCAAACATCACTTT | 59.491 | 43.478 | 0.00 | 0.00 | 32.87 | 2.66 |
3183 | 4316 | 1.308069 | CCCTGTCAGATGTTTGCCGG | 61.308 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
3336 | 4481 | 7.197901 | AGAATCCATGGATGAGGAAGATATC | 57.802 | 40.000 | 27.97 | 16.36 | 37.48 | 1.63 |
3388 | 4533 | 0.806102 | TCGATTAGCTTGCGCACCTC | 60.806 | 55.000 | 11.12 | 1.32 | 39.10 | 3.85 |
3494 | 4641 | 0.819582 | CCCCACAATCTGCAATGACC | 59.180 | 55.000 | 1.23 | 0.00 | 0.00 | 4.02 |
3580 | 4727 | 1.487976 | TGATGGACAGATTGAGGAGGC | 59.512 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
3678 | 4825 | 5.008980 | AGCTGCTGAATTCTCTTTAGCTTT | 58.991 | 37.500 | 13.87 | 0.47 | 36.96 | 3.51 |
3749 | 4896 | 2.359850 | TTGATGGCACCAGACCGC | 60.360 | 61.111 | 0.00 | 0.00 | 0.00 | 5.68 |
3900 | 5047 | 3.139850 | CAAGAGCAGGATCCATTAGCTG | 58.860 | 50.000 | 20.92 | 8.58 | 35.36 | 4.24 |
3905 | 5052 | 3.967467 | ATTCCAAGAGCAGGATCCATT | 57.033 | 42.857 | 15.82 | 0.00 | 34.56 | 3.16 |
3926 | 5073 | 2.127232 | AGCAACAGCTTTGCCGGTT | 61.127 | 52.632 | 21.98 | 4.84 | 45.98 | 4.44 |
3931 | 5078 | 1.484356 | CAAGACAGCAACAGCTTTGC | 58.516 | 50.000 | 19.56 | 19.56 | 45.22 | 3.68 |
3941 | 5088 | 1.311859 | CAAGACTTGCCAAGACAGCA | 58.688 | 50.000 | 12.25 | 0.00 | 38.81 | 4.41 |
3955 | 5102 | 4.345257 | TCCCTTCTGGTATCATAGCAAGAC | 59.655 | 45.833 | 0.00 | 0.00 | 35.53 | 3.01 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.