Multiple sequence alignment - TraesCS3B01G443000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G443000 chr3B 100.000 5135 0 0 1 5135 683432125 683426991 0.000000e+00 9483.0
1 TraesCS3B01G443000 chr3B 92.256 891 53 12 2550 3431 683513685 683512802 0.000000e+00 1249.0
2 TraesCS3B01G443000 chr3B 92.135 890 58 10 2550 3431 683828803 683827918 0.000000e+00 1245.0
3 TraesCS3B01G443000 chr3B 94.096 813 41 2 4329 5135 88316305 88315494 0.000000e+00 1229.0
4 TraesCS3B01G443000 chr3B 88.102 706 68 4 2780 3482 683827618 683826926 0.000000e+00 824.0
5 TraesCS3B01G443000 chr3B 87.694 707 69 7 2780 3482 683365988 683365296 0.000000e+00 808.0
6 TraesCS3B01G443000 chr3B 87.677 706 71 4 2780 3482 683512505 683511813 0.000000e+00 808.0
7 TraesCS3B01G443000 chr3B 93.890 491 29 1 2550 3039 683367368 683366878 0.000000e+00 739.0
8 TraesCS3B01G443000 chr3B 90.602 415 31 6 3022 3431 683366698 683366287 1.260000e-150 544.0
9 TraesCS3B01G443000 chr3B 88.636 176 12 2 2375 2542 683514095 683513920 1.870000e-49 207.0
10 TraesCS3B01G443000 chr3B 88.636 176 12 2 2375 2542 683829283 683829108 1.870000e-49 207.0
11 TraesCS3B01G443000 chr3B 91.667 108 9 0 2435 2542 683367780 683367673 3.200000e-32 150.0
12 TraesCS3B01G443000 chr3D 95.438 1666 68 5 2670 4331 519249497 519247836 0.000000e+00 2649.0
13 TraesCS3B01G443000 chr3D 96.285 1615 42 6 977 2581 519251127 519249521 0.000000e+00 2634.0
14 TraesCS3B01G443000 chr3D 96.006 676 21 4 6 681 519251794 519251125 0.000000e+00 1094.0
15 TraesCS3B01G443000 chr3D 91.709 398 27 6 2520 2912 519315339 519314943 9.720000e-152 547.0
16 TraesCS3B01G443000 chr3D 80.745 644 93 20 1 639 24061002 24061619 1.670000e-129 473.0
17 TraesCS3B01G443000 chr3D 94.203 138 7 1 2375 2512 519315933 519315797 5.210000e-50 209.0
18 TraesCS3B01G443000 chr3D 94.203 138 7 1 2375 2512 519316369 519316233 5.210000e-50 209.0
19 TraesCS3B01G443000 chr3A 95.995 1623 44 7 977 2590 654319758 654318148 0.000000e+00 2617.0
20 TraesCS3B01G443000 chr3A 94.910 1670 69 10 2670 4331 654318141 654316480 0.000000e+00 2599.0
21 TraesCS3B01G443000 chr3A 95.620 685 22 3 1 681 654320436 654319756 0.000000e+00 1092.0
22 TraesCS3B01G443000 chr3A 85.667 300 38 4 683 981 16111803 16111508 1.390000e-80 311.0
23 TraesCS3B01G443000 chr6B 95.309 810 35 1 4329 5135 670159179 670158370 0.000000e+00 1282.0
24 TraesCS3B01G443000 chr6B 94.485 816 35 4 4329 5135 635719187 635718373 0.000000e+00 1249.0
25 TraesCS3B01G443000 chr4B 95.185 810 35 2 4329 5135 596843515 596842707 0.000000e+00 1277.0
26 TraesCS3B01G443000 chr4B 94.125 817 38 3 4329 5135 88701343 88700527 0.000000e+00 1234.0
27 TraesCS3B01G443000 chr4B 93.873 816 40 4 4329 5135 89094116 89094930 0.000000e+00 1221.0
28 TraesCS3B01G443000 chr4B 93.951 810 44 3 4329 5135 661063587 661064394 0.000000e+00 1219.0
29 TraesCS3B01G443000 chr5B 94.485 816 35 3 4329 5135 644361362 644362176 0.000000e+00 1249.0
30 TraesCS3B01G443000 chr5B 84.188 468 57 11 204 670 673460927 673461378 6.100000e-119 438.0
31 TraesCS3B01G443000 chr2B 94.763 802 38 2 4331 5129 579536963 579537763 0.000000e+00 1245.0
32 TraesCS3B01G443000 chr7D 93.258 712 46 2 3467 4178 45680383 45679674 0.000000e+00 1048.0
33 TraesCS3B01G443000 chr7D 89.266 531 48 6 2944 3470 45696048 45695523 0.000000e+00 656.0
34 TraesCS3B01G443000 chr7A 93.642 519 25 5 3467 3985 47876315 47875805 0.000000e+00 769.0
35 TraesCS3B01G443000 chr7A 90.189 530 49 2 2944 3470 47897871 47897342 0.000000e+00 688.0
36 TraesCS3B01G443000 chr4A 93.864 440 25 2 3480 3918 658881727 658881289 0.000000e+00 662.0
37 TraesCS3B01G443000 chr4A 87.382 531 61 6 2944 3470 658894973 658894445 5.690000e-169 604.0
38 TraesCS3B01G443000 chr4A 94.118 204 12 0 3467 3670 658882118 658881915 1.390000e-80 311.0
39 TraesCS3B01G443000 chr4A 94.764 191 10 0 3480 3670 658881916 658881726 1.080000e-76 298.0
40 TraesCS3B01G443000 chr4A 89.362 47 4 1 1298 1344 637320086 637320041 2.000000e-04 58.4
41 TraesCS3B01G443000 chr4A 89.362 47 4 1 1298 1344 637456701 637456656 2.000000e-04 58.4
42 TraesCS3B01G443000 chr2D 93.791 306 17 2 682 987 343718902 343718599 4.690000e-125 459.0
43 TraesCS3B01G443000 chr2D 89.333 300 30 1 682 981 128891470 128891173 4.850000e-100 375.0
44 TraesCS3B01G443000 chr2D 83.007 306 41 10 8 309 561957660 561957362 3.050000e-67 267.0
45 TraesCS3B01G443000 chr1B 91.186 295 20 5 682 976 558971801 558972089 3.730000e-106 396.0
46 TraesCS3B01G443000 chr5D 90.291 309 17 6 682 982 414018300 414017997 4.820000e-105 392.0
47 TraesCS3B01G443000 chr5D 88.806 134 13 2 1933 2065 563593871 563594003 4.110000e-36 163.0
48 TraesCS3B01G443000 chr1A 85.859 297 37 4 682 978 540915679 540915970 1.390000e-80 311.0
49 TraesCS3B01G443000 chr1A 85.522 297 38 4 682 978 540894350 540894641 6.460000e-79 305.0
50 TraesCS3B01G443000 chr7B 85.570 298 40 2 682 978 547714420 547714715 4.990000e-80 309.0
51 TraesCS3B01G443000 chr5A 84.545 220 25 3 977 1196 495585369 495585579 5.210000e-50 209.0
52 TraesCS3B01G443000 chr2A 79.333 300 55 6 683 981 369205028 369204735 2.420000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G443000 chr3B 683426991 683432125 5134 True 9483.000000 9483 100.000000 1 5135 1 chr3B.!!$R2 5134
1 TraesCS3B01G443000 chr3B 88315494 88316305 811 True 1229.000000 1229 94.096000 4329 5135 1 chr3B.!!$R1 806
2 TraesCS3B01G443000 chr3B 683826926 683829283 2357 True 758.666667 1245 89.624333 2375 3482 3 chr3B.!!$R5 1107
3 TraesCS3B01G443000 chr3B 683511813 683514095 2282 True 754.666667 1249 89.523000 2375 3482 3 chr3B.!!$R4 1107
4 TraesCS3B01G443000 chr3B 683365296 683367780 2484 True 560.250000 808 90.963250 2435 3482 4 chr3B.!!$R3 1047
5 TraesCS3B01G443000 chr3D 519247836 519251794 3958 True 2125.666667 2649 95.909667 6 4331 3 chr3D.!!$R1 4325
6 TraesCS3B01G443000 chr3D 24061002 24061619 617 False 473.000000 473 80.745000 1 639 1 chr3D.!!$F1 638
7 TraesCS3B01G443000 chr3D 519314943 519316369 1426 True 321.666667 547 93.371667 2375 2912 3 chr3D.!!$R2 537
8 TraesCS3B01G443000 chr3A 654316480 654320436 3956 True 2102.666667 2617 95.508333 1 4331 3 chr3A.!!$R2 4330
9 TraesCS3B01G443000 chr6B 670158370 670159179 809 True 1282.000000 1282 95.309000 4329 5135 1 chr6B.!!$R2 806
10 TraesCS3B01G443000 chr6B 635718373 635719187 814 True 1249.000000 1249 94.485000 4329 5135 1 chr6B.!!$R1 806
11 TraesCS3B01G443000 chr4B 596842707 596843515 808 True 1277.000000 1277 95.185000 4329 5135 1 chr4B.!!$R2 806
12 TraesCS3B01G443000 chr4B 88700527 88701343 816 True 1234.000000 1234 94.125000 4329 5135 1 chr4B.!!$R1 806
13 TraesCS3B01G443000 chr4B 89094116 89094930 814 False 1221.000000 1221 93.873000 4329 5135 1 chr4B.!!$F1 806
14 TraesCS3B01G443000 chr4B 661063587 661064394 807 False 1219.000000 1219 93.951000 4329 5135 1 chr4B.!!$F2 806
15 TraesCS3B01G443000 chr5B 644361362 644362176 814 False 1249.000000 1249 94.485000 4329 5135 1 chr5B.!!$F1 806
16 TraesCS3B01G443000 chr2B 579536963 579537763 800 False 1245.000000 1245 94.763000 4331 5129 1 chr2B.!!$F1 798
17 TraesCS3B01G443000 chr7D 45679674 45680383 709 True 1048.000000 1048 93.258000 3467 4178 1 chr7D.!!$R1 711
18 TraesCS3B01G443000 chr7D 45695523 45696048 525 True 656.000000 656 89.266000 2944 3470 1 chr7D.!!$R2 526
19 TraesCS3B01G443000 chr7A 47875805 47876315 510 True 769.000000 769 93.642000 3467 3985 1 chr7A.!!$R1 518
20 TraesCS3B01G443000 chr7A 47897342 47897871 529 True 688.000000 688 90.189000 2944 3470 1 chr7A.!!$R2 526
21 TraesCS3B01G443000 chr4A 658894445 658894973 528 True 604.000000 604 87.382000 2944 3470 1 chr4A.!!$R3 526
22 TraesCS3B01G443000 chr4A 658881289 658882118 829 True 423.666667 662 94.248667 3467 3918 3 chr4A.!!$R4 451

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
927 935 0.036671 AACGGTGGTCGGGATTCTTC 60.037 55.000 0.00 0.0 44.45 2.87 F
1369 1382 0.531090 AAGTCGCACGGCAGTTACAA 60.531 50.000 0.00 0.0 0.00 2.41 F
2160 2177 2.156917 CAGCTGTTCCTGCATCTTCAA 58.843 47.619 5.25 0.0 0.00 2.69 F
3275 5633 1.372499 TGACTTGCACGTACTCGCC 60.372 57.895 0.00 0.0 41.18 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2292 2313 2.507471 AGGATCAAGGTTGGATGTCCTC 59.493 50.0 0.09 0.0 36.82 3.71 R
2967 4185 0.107214 GCCACAGCATTAGCAGGGTA 60.107 55.0 0.00 0.0 45.49 3.69 R
3335 5696 0.532115 GCATTTGGGGCAGGTAACAG 59.468 55.0 0.00 0.0 41.41 3.16 R
4525 7269 0.183971 TTTTCCCTTGCCGGAGAACA 59.816 50.0 5.05 0.0 32.13 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.603242 TCCTGTAGTATCAACTTTTGAAACTC 57.397 34.615 0.00 0.00 43.95 3.01
282 288 5.425577 TTGCGTGCTATTTGTTTACTTGA 57.574 34.783 0.00 0.00 0.00 3.02
298 304 8.470805 TGTTTACTTGAAGTCCTTGCATTTTTA 58.529 29.630 0.00 0.00 0.00 1.52
299 305 9.476202 GTTTACTTGAAGTCCTTGCATTTTTAT 57.524 29.630 0.00 0.00 0.00 1.40
302 308 8.962884 ACTTGAAGTCCTTGCATTTTTATTTT 57.037 26.923 0.00 0.00 0.00 1.82
303 309 8.829612 ACTTGAAGTCCTTGCATTTTTATTTTG 58.170 29.630 0.00 0.00 0.00 2.44
415 422 2.309613 TGAAAGCTTTCATGTGCTGGT 58.690 42.857 32.86 0.00 41.88 4.00
457 464 8.246180 AGTTGCATCAAATTCTTTTCATATCGT 58.754 29.630 0.00 0.00 0.00 3.73
660 668 5.319043 TCTGGGAAGTTCTTTTATGTGGT 57.681 39.130 2.25 0.00 0.00 4.16
678 686 4.006989 GTGGTGTTGTTGATGGCTGTATA 58.993 43.478 0.00 0.00 0.00 1.47
679 687 4.457603 GTGGTGTTGTTGATGGCTGTATAA 59.542 41.667 0.00 0.00 0.00 0.98
680 688 4.699735 TGGTGTTGTTGATGGCTGTATAAG 59.300 41.667 0.00 0.00 0.00 1.73
691 699 1.121240 CTGTATAAGCTTCGACGGCG 58.879 55.000 2.87 2.87 39.35 6.46
692 700 0.868602 TGTATAAGCTTCGACGGCGC 60.869 55.000 5.31 0.00 37.46 6.53
693 701 0.594284 GTATAAGCTTCGACGGCGCT 60.594 55.000 5.31 0.00 37.46 5.92
694 702 0.101759 TATAAGCTTCGACGGCGCTT 59.898 50.000 21.76 21.76 45.15 4.68
695 703 1.146358 ATAAGCTTCGACGGCGCTTC 61.146 55.000 21.73 3.08 42.48 3.86
705 713 3.564027 GGCGCTTCCCGATCGTTG 61.564 66.667 15.09 4.90 40.02 4.10
706 714 3.564027 GCGCTTCCCGATCGTTGG 61.564 66.667 15.09 9.27 40.02 3.77
707 715 2.183300 CGCTTCCCGATCGTTGGA 59.817 61.111 15.09 11.67 40.02 3.53
708 716 1.878522 CGCTTCCCGATCGTTGGAG 60.879 63.158 15.09 9.91 40.02 3.86
709 717 1.521681 GCTTCCCGATCGTTGGAGG 60.522 63.158 15.09 15.20 30.91 4.30
710 718 1.898154 CTTCCCGATCGTTGGAGGT 59.102 57.895 15.09 0.00 30.91 3.85
711 719 0.460284 CTTCCCGATCGTTGGAGGTG 60.460 60.000 15.09 5.32 30.91 4.00
712 720 1.895020 TTCCCGATCGTTGGAGGTGG 61.895 60.000 15.09 5.39 30.91 4.61
713 721 2.656069 CCCGATCGTTGGAGGTGGT 61.656 63.158 15.09 0.00 0.00 4.16
714 722 1.324740 CCCGATCGTTGGAGGTGGTA 61.325 60.000 15.09 0.00 0.00 3.25
715 723 0.102481 CCGATCGTTGGAGGTGGTAG 59.898 60.000 15.09 0.00 0.00 3.18
716 724 0.815734 CGATCGTTGGAGGTGGTAGT 59.184 55.000 7.03 0.00 0.00 2.73
717 725 1.203994 CGATCGTTGGAGGTGGTAGTT 59.796 52.381 7.03 0.00 0.00 2.24
718 726 2.424601 CGATCGTTGGAGGTGGTAGTTA 59.575 50.000 7.03 0.00 0.00 2.24
719 727 3.488721 CGATCGTTGGAGGTGGTAGTTAG 60.489 52.174 7.03 0.00 0.00 2.34
720 728 2.173519 TCGTTGGAGGTGGTAGTTAGG 58.826 52.381 0.00 0.00 0.00 2.69
721 729 1.405121 CGTTGGAGGTGGTAGTTAGGC 60.405 57.143 0.00 0.00 0.00 3.93
722 730 0.899720 TTGGAGGTGGTAGTTAGGCG 59.100 55.000 0.00 0.00 0.00 5.52
723 731 0.251922 TGGAGGTGGTAGTTAGGCGT 60.252 55.000 0.00 0.00 0.00 5.68
724 732 0.175073 GGAGGTGGTAGTTAGGCGTG 59.825 60.000 0.00 0.00 0.00 5.34
725 733 0.893447 GAGGTGGTAGTTAGGCGTGT 59.107 55.000 0.00 0.00 0.00 4.49
726 734 0.893447 AGGTGGTAGTTAGGCGTGTC 59.107 55.000 0.00 0.00 0.00 3.67
727 735 0.457337 GGTGGTAGTTAGGCGTGTCG 60.457 60.000 0.00 0.00 0.00 4.35
728 736 0.242017 GTGGTAGTTAGGCGTGTCGT 59.758 55.000 0.00 0.00 0.00 4.34
729 737 0.523072 TGGTAGTTAGGCGTGTCGTC 59.477 55.000 0.00 0.00 0.00 4.20
730 738 0.523072 GGTAGTTAGGCGTGTCGTCA 59.477 55.000 0.00 0.00 32.13 4.35
731 739 1.611043 GTAGTTAGGCGTGTCGTCAC 58.389 55.000 2.47 2.47 40.79 3.67
739 747 3.672293 GTGTCGTCACGGAGGGTA 58.328 61.111 0.00 0.00 34.79 3.69
740 748 1.505353 GTGTCGTCACGGAGGGTAG 59.495 63.158 0.00 0.00 34.79 3.18
741 749 0.957395 GTGTCGTCACGGAGGGTAGA 60.957 60.000 0.00 0.00 34.79 2.59
742 750 0.675837 TGTCGTCACGGAGGGTAGAG 60.676 60.000 0.00 0.00 0.00 2.43
743 751 1.748122 TCGTCACGGAGGGTAGAGC 60.748 63.158 0.00 0.00 0.00 4.09
744 752 1.749638 CGTCACGGAGGGTAGAGCT 60.750 63.158 0.00 0.00 0.00 4.09
745 753 1.313812 CGTCACGGAGGGTAGAGCTT 61.314 60.000 0.00 0.00 0.00 3.74
746 754 0.173708 GTCACGGAGGGTAGAGCTTG 59.826 60.000 0.00 0.00 0.00 4.01
747 755 0.970937 TCACGGAGGGTAGAGCTTGG 60.971 60.000 0.00 0.00 0.00 3.61
748 756 2.359967 ACGGAGGGTAGAGCTTGGC 61.360 63.158 0.00 0.00 0.00 4.52
749 757 2.359169 CGGAGGGTAGAGCTTGGCA 61.359 63.158 0.00 0.00 0.00 4.92
750 758 1.524482 GGAGGGTAGAGCTTGGCAG 59.476 63.158 0.00 0.00 0.00 4.85
780 788 4.559862 CCTGTTGAAGGGTGAAGTAGAT 57.440 45.455 0.00 0.00 43.15 1.98
781 789 5.677319 CCTGTTGAAGGGTGAAGTAGATA 57.323 43.478 0.00 0.00 43.15 1.98
782 790 5.665459 CCTGTTGAAGGGTGAAGTAGATAG 58.335 45.833 0.00 0.00 43.15 2.08
783 791 5.086104 TGTTGAAGGGTGAAGTAGATAGC 57.914 43.478 0.00 0.00 0.00 2.97
784 792 4.530553 TGTTGAAGGGTGAAGTAGATAGCA 59.469 41.667 0.00 0.00 0.00 3.49
785 793 4.737855 TGAAGGGTGAAGTAGATAGCAC 57.262 45.455 0.00 0.00 0.00 4.40
786 794 3.130516 TGAAGGGTGAAGTAGATAGCACG 59.869 47.826 0.00 0.00 32.24 5.34
787 795 2.736347 AGGGTGAAGTAGATAGCACGT 58.264 47.619 0.00 0.00 32.24 4.49
788 796 3.097614 AGGGTGAAGTAGATAGCACGTT 58.902 45.455 0.00 0.00 32.24 3.99
789 797 3.514309 AGGGTGAAGTAGATAGCACGTTT 59.486 43.478 0.00 0.00 32.24 3.60
790 798 3.617263 GGGTGAAGTAGATAGCACGTTTG 59.383 47.826 0.00 0.00 32.24 2.93
791 799 4.491676 GGTGAAGTAGATAGCACGTTTGA 58.508 43.478 0.00 0.00 32.24 2.69
792 800 4.927425 GGTGAAGTAGATAGCACGTTTGAA 59.073 41.667 0.00 0.00 32.24 2.69
793 801 5.163982 GGTGAAGTAGATAGCACGTTTGAAC 60.164 44.000 0.00 0.00 32.24 3.18
794 802 5.634020 GTGAAGTAGATAGCACGTTTGAACT 59.366 40.000 0.00 0.00 0.00 3.01
795 803 6.145696 GTGAAGTAGATAGCACGTTTGAACTT 59.854 38.462 0.00 0.00 0.00 2.66
796 804 6.365247 TGAAGTAGATAGCACGTTTGAACTTC 59.635 38.462 11.78 11.78 40.27 3.01
797 805 6.026947 AGTAGATAGCACGTTTGAACTTCT 57.973 37.500 0.00 0.00 0.00 2.85
798 806 6.094061 AGTAGATAGCACGTTTGAACTTCTC 58.906 40.000 0.00 0.00 0.00 2.87
799 807 3.921021 AGATAGCACGTTTGAACTTCTCG 59.079 43.478 0.00 0.00 0.00 4.04
800 808 1.935933 AGCACGTTTGAACTTCTCGT 58.064 45.000 0.00 0.00 35.12 4.18
802 810 2.645628 CACGTTTGAACTTCTCGTGG 57.354 50.000 18.02 7.56 44.92 4.94
803 811 1.260561 CACGTTTGAACTTCTCGTGGG 59.739 52.381 18.02 3.95 44.92 4.61
804 812 0.865769 CGTTTGAACTTCTCGTGGGG 59.134 55.000 0.00 0.00 0.00 4.96
805 813 1.808891 CGTTTGAACTTCTCGTGGGGT 60.809 52.381 0.00 0.00 0.00 4.95
806 814 1.602377 GTTTGAACTTCTCGTGGGGTG 59.398 52.381 0.00 0.00 0.00 4.61
807 815 0.107831 TTGAACTTCTCGTGGGGTGG 59.892 55.000 0.00 0.00 0.00 4.61
808 816 1.003718 GAACTTCTCGTGGGGTGGG 60.004 63.158 0.00 0.00 0.00 4.61
809 817 3.192103 AACTTCTCGTGGGGTGGGC 62.192 63.158 0.00 0.00 0.00 5.36
810 818 4.760047 CTTCTCGTGGGGTGGGCG 62.760 72.222 0.00 0.00 0.00 6.13
821 829 3.702048 GTGGGCGGGCAGTGAGTA 61.702 66.667 3.27 0.00 0.00 2.59
822 830 3.390521 TGGGCGGGCAGTGAGTAG 61.391 66.667 3.27 0.00 0.00 2.57
823 831 3.391382 GGGCGGGCAGTGAGTAGT 61.391 66.667 3.27 0.00 0.00 2.73
824 832 2.184579 GGCGGGCAGTGAGTAGTC 59.815 66.667 0.00 0.00 0.00 2.59
825 833 2.184579 GCGGGCAGTGAGTAGTCC 59.815 66.667 0.00 0.00 0.00 3.85
826 834 2.490217 CGGGCAGTGAGTAGTCCG 59.510 66.667 0.00 0.00 0.00 4.79
827 835 2.893398 GGGCAGTGAGTAGTCCGG 59.107 66.667 0.00 0.00 0.00 5.14
828 836 1.982938 GGGCAGTGAGTAGTCCGGT 60.983 63.158 0.00 0.00 0.00 5.28
829 837 0.682209 GGGCAGTGAGTAGTCCGGTA 60.682 60.000 0.00 0.00 0.00 4.02
830 838 1.400737 GGCAGTGAGTAGTCCGGTAT 58.599 55.000 0.00 0.00 0.00 2.73
831 839 1.755380 GGCAGTGAGTAGTCCGGTATT 59.245 52.381 0.00 0.00 0.00 1.89
832 840 2.223758 GGCAGTGAGTAGTCCGGTATTC 60.224 54.545 0.00 0.00 0.00 1.75
833 841 2.223758 GCAGTGAGTAGTCCGGTATTCC 60.224 54.545 0.00 0.00 0.00 3.01
845 853 1.849097 GGTATTCCGCGTTCTGTAGG 58.151 55.000 4.92 0.00 0.00 3.18
846 854 1.135721 GGTATTCCGCGTTCTGTAGGT 59.864 52.381 4.92 0.00 0.00 3.08
847 855 2.190981 GTATTCCGCGTTCTGTAGGTG 58.809 52.381 4.92 0.00 0.00 4.00
848 856 0.108329 ATTCCGCGTTCTGTAGGTGG 60.108 55.000 4.92 0.79 42.36 4.61
849 857 1.180456 TTCCGCGTTCTGTAGGTGGA 61.180 55.000 4.92 5.35 46.55 4.02
850 858 1.153823 CCGCGTTCTGTAGGTGGAG 60.154 63.158 4.92 0.00 43.41 3.86
851 859 1.805945 CGCGTTCTGTAGGTGGAGC 60.806 63.158 0.00 0.00 0.00 4.70
852 860 1.805945 GCGTTCTGTAGGTGGAGCG 60.806 63.158 0.00 0.00 38.74 5.03
853 861 1.153823 CGTTCTGTAGGTGGAGCGG 60.154 63.158 0.00 0.00 33.73 5.52
854 862 1.874345 CGTTCTGTAGGTGGAGCGGT 61.874 60.000 0.00 0.00 33.73 5.68
855 863 0.389948 GTTCTGTAGGTGGAGCGGTG 60.390 60.000 0.00 0.00 0.00 4.94
856 864 1.541310 TTCTGTAGGTGGAGCGGTGG 61.541 60.000 0.00 0.00 0.00 4.61
857 865 3.000819 TGTAGGTGGAGCGGTGGG 61.001 66.667 0.00 0.00 0.00 4.61
858 866 3.001406 GTAGGTGGAGCGGTGGGT 61.001 66.667 0.00 0.00 0.00 4.51
859 867 2.203877 TAGGTGGAGCGGTGGGTT 60.204 61.111 0.00 0.00 0.00 4.11
860 868 2.589157 TAGGTGGAGCGGTGGGTTG 61.589 63.158 0.00 0.00 0.00 3.77
861 869 4.265056 GGTGGAGCGGTGGGTTGT 62.265 66.667 0.00 0.00 0.00 3.32
862 870 2.745037 GTGGAGCGGTGGGTTGTA 59.255 61.111 0.00 0.00 0.00 2.41
863 871 1.298667 GTGGAGCGGTGGGTTGTAT 59.701 57.895 0.00 0.00 0.00 2.29
864 872 1.024579 GTGGAGCGGTGGGTTGTATG 61.025 60.000 0.00 0.00 0.00 2.39
865 873 2.112815 GGAGCGGTGGGTTGTATGC 61.113 63.158 0.00 0.00 0.00 3.14
866 874 2.435938 AGCGGTGGGTTGTATGCG 60.436 61.111 0.00 0.00 0.00 4.73
867 875 2.744709 GCGGTGGGTTGTATGCGT 60.745 61.111 0.00 0.00 0.00 5.24
868 876 2.329614 GCGGTGGGTTGTATGCGTT 61.330 57.895 0.00 0.00 0.00 4.84
869 877 1.499949 CGGTGGGTTGTATGCGTTG 59.500 57.895 0.00 0.00 0.00 4.10
870 878 1.231958 CGGTGGGTTGTATGCGTTGT 61.232 55.000 0.00 0.00 0.00 3.32
871 879 0.239879 GGTGGGTTGTATGCGTTGTG 59.760 55.000 0.00 0.00 0.00 3.33
872 880 0.948678 GTGGGTTGTATGCGTTGTGT 59.051 50.000 0.00 0.00 0.00 3.72
873 881 1.335496 GTGGGTTGTATGCGTTGTGTT 59.665 47.619 0.00 0.00 0.00 3.32
874 882 1.335182 TGGGTTGTATGCGTTGTGTTG 59.665 47.619 0.00 0.00 0.00 3.33
875 883 1.604755 GGGTTGTATGCGTTGTGTTGA 59.395 47.619 0.00 0.00 0.00 3.18
876 884 2.227865 GGGTTGTATGCGTTGTGTTGAT 59.772 45.455 0.00 0.00 0.00 2.57
877 885 3.233578 GGTTGTATGCGTTGTGTTGATG 58.766 45.455 0.00 0.00 0.00 3.07
878 886 3.304391 GGTTGTATGCGTTGTGTTGATGT 60.304 43.478 0.00 0.00 0.00 3.06
879 887 4.286910 GTTGTATGCGTTGTGTTGATGTT 58.713 39.130 0.00 0.00 0.00 2.71
880 888 3.882982 TGTATGCGTTGTGTTGATGTTG 58.117 40.909 0.00 0.00 0.00 3.33
881 889 3.561725 TGTATGCGTTGTGTTGATGTTGA 59.438 39.130 0.00 0.00 0.00 3.18
882 890 3.921119 ATGCGTTGTGTTGATGTTGAT 57.079 38.095 0.00 0.00 0.00 2.57
883 891 2.997463 TGCGTTGTGTTGATGTTGATG 58.003 42.857 0.00 0.00 0.00 3.07
884 892 2.357323 TGCGTTGTGTTGATGTTGATGT 59.643 40.909 0.00 0.00 0.00 3.06
885 893 3.561725 TGCGTTGTGTTGATGTTGATGTA 59.438 39.130 0.00 0.00 0.00 2.29
886 894 4.151070 GCGTTGTGTTGATGTTGATGTAG 58.849 43.478 0.00 0.00 0.00 2.74
887 895 4.151070 CGTTGTGTTGATGTTGATGTAGC 58.849 43.478 0.00 0.00 0.00 3.58
888 896 4.151070 GTTGTGTTGATGTTGATGTAGCG 58.849 43.478 0.00 0.00 0.00 4.26
889 897 3.398406 TGTGTTGATGTTGATGTAGCGT 58.602 40.909 0.00 0.00 0.00 5.07
890 898 3.812609 TGTGTTGATGTTGATGTAGCGTT 59.187 39.130 0.00 0.00 0.00 4.84
891 899 4.274705 TGTGTTGATGTTGATGTAGCGTTT 59.725 37.500 0.00 0.00 0.00 3.60
892 900 5.467063 TGTGTTGATGTTGATGTAGCGTTTA 59.533 36.000 0.00 0.00 0.00 2.01
893 901 6.017852 TGTGTTGATGTTGATGTAGCGTTTAA 60.018 34.615 0.00 0.00 0.00 1.52
894 902 6.302313 GTGTTGATGTTGATGTAGCGTTTAAC 59.698 38.462 0.00 0.00 0.00 2.01
895 903 6.203915 TGTTGATGTTGATGTAGCGTTTAACT 59.796 34.615 0.00 0.00 0.00 2.24
896 904 6.403333 TGATGTTGATGTAGCGTTTAACTC 57.597 37.500 0.00 0.00 0.00 3.01
897 905 6.163476 TGATGTTGATGTAGCGTTTAACTCT 58.837 36.000 0.00 0.00 0.00 3.24
898 906 7.317390 TGATGTTGATGTAGCGTTTAACTCTA 58.683 34.615 0.00 0.00 0.00 2.43
899 907 7.979537 TGATGTTGATGTAGCGTTTAACTCTAT 59.020 33.333 0.00 0.00 0.00 1.98
900 908 7.520119 TGTTGATGTAGCGTTTAACTCTATG 57.480 36.000 0.00 0.00 0.00 2.23
901 909 7.094631 TGTTGATGTAGCGTTTAACTCTATGT 58.905 34.615 0.00 0.00 0.00 2.29
902 910 8.245491 TGTTGATGTAGCGTTTAACTCTATGTA 58.755 33.333 0.00 0.00 0.00 2.29
903 911 9.079833 GTTGATGTAGCGTTTAACTCTATGTAA 57.920 33.333 0.00 0.00 0.00 2.41
904 912 8.624701 TGATGTAGCGTTTAACTCTATGTAAC 57.375 34.615 0.00 0.00 0.00 2.50
905 913 8.245491 TGATGTAGCGTTTAACTCTATGTAACA 58.755 33.333 0.00 0.00 0.00 2.41
906 914 9.245962 GATGTAGCGTTTAACTCTATGTAACAT 57.754 33.333 0.00 0.00 0.00 2.71
907 915 8.624701 TGTAGCGTTTAACTCTATGTAACATC 57.375 34.615 0.00 0.00 0.00 3.06
908 916 8.245491 TGTAGCGTTTAACTCTATGTAACATCA 58.755 33.333 0.00 0.00 0.00 3.07
909 917 9.079833 GTAGCGTTTAACTCTATGTAACATCAA 57.920 33.333 0.00 0.00 0.00 2.57
910 918 7.960793 AGCGTTTAACTCTATGTAACATCAAC 58.039 34.615 0.00 0.00 0.00 3.18
911 919 6.892951 GCGTTTAACTCTATGTAACATCAACG 59.107 38.462 0.00 0.00 36.18 4.10
912 920 7.388712 CGTTTAACTCTATGTAACATCAACGG 58.611 38.462 0.00 0.00 0.00 4.44
913 921 7.062605 CGTTTAACTCTATGTAACATCAACGGT 59.937 37.037 0.00 0.00 0.00 4.83
914 922 7.821595 TTAACTCTATGTAACATCAACGGTG 57.178 36.000 0.00 0.00 0.00 4.94
915 923 4.755411 ACTCTATGTAACATCAACGGTGG 58.245 43.478 0.00 0.00 0.00 4.61
916 924 4.222145 ACTCTATGTAACATCAACGGTGGT 59.778 41.667 0.00 0.00 0.00 4.16
917 925 4.751060 TCTATGTAACATCAACGGTGGTC 58.249 43.478 0.00 0.00 0.00 4.02
918 926 1.785768 TGTAACATCAACGGTGGTCG 58.214 50.000 0.00 0.00 45.88 4.79
919 927 1.073177 GTAACATCAACGGTGGTCGG 58.927 55.000 0.00 0.00 44.45 4.79
920 928 0.037139 TAACATCAACGGTGGTCGGG 60.037 55.000 0.00 0.00 44.45 5.14
921 929 1.760479 AACATCAACGGTGGTCGGGA 61.760 55.000 0.00 0.00 44.45 5.14
922 930 1.220749 CATCAACGGTGGTCGGGAT 59.779 57.895 0.00 0.00 44.45 3.85
923 931 0.392461 CATCAACGGTGGTCGGGATT 60.392 55.000 0.00 0.00 44.45 3.01
924 932 0.107848 ATCAACGGTGGTCGGGATTC 60.108 55.000 0.00 0.00 44.45 2.52
925 933 1.189524 TCAACGGTGGTCGGGATTCT 61.190 55.000 0.00 0.00 44.45 2.40
926 934 0.321298 CAACGGTGGTCGGGATTCTT 60.321 55.000 0.00 0.00 44.45 2.52
927 935 0.036671 AACGGTGGTCGGGATTCTTC 60.037 55.000 0.00 0.00 44.45 2.87
928 936 1.153429 CGGTGGTCGGGATTCTTCC 60.153 63.158 0.00 0.00 41.77 3.46
951 959 6.694445 CCCCCTTCTTCTATACAAGATGAT 57.306 41.667 5.53 0.00 37.99 2.45
952 960 7.798710 CCCCCTTCTTCTATACAAGATGATA 57.201 40.000 5.53 0.00 37.99 2.15
953 961 7.616313 CCCCCTTCTTCTATACAAGATGATAC 58.384 42.308 5.53 0.00 37.99 2.24
954 962 7.316640 CCCCTTCTTCTATACAAGATGATACG 58.683 42.308 5.53 0.00 37.99 3.06
955 963 6.809196 CCCTTCTTCTATACAAGATGATACGC 59.191 42.308 5.53 0.00 37.99 4.42
956 964 7.371159 CCTTCTTCTATACAAGATGATACGCA 58.629 38.462 5.53 0.00 37.99 5.24
957 965 7.327275 CCTTCTTCTATACAAGATGATACGCAC 59.673 40.741 5.53 0.00 37.99 5.34
958 966 7.272037 TCTTCTATACAAGATGATACGCACA 57.728 36.000 0.00 0.00 34.39 4.57
959 967 7.139392 TCTTCTATACAAGATGATACGCACAC 58.861 38.462 0.00 0.00 34.39 3.82
960 968 6.635030 TCTATACAAGATGATACGCACACT 57.365 37.500 0.00 0.00 0.00 3.55
961 969 6.669278 TCTATACAAGATGATACGCACACTC 58.331 40.000 0.00 0.00 0.00 3.51
962 970 2.530177 ACAAGATGATACGCACACTCG 58.470 47.619 0.00 0.00 0.00 4.18
963 971 2.094700 ACAAGATGATACGCACACTCGT 60.095 45.455 0.00 0.00 45.49 4.18
964 972 2.194800 AGATGATACGCACACTCGTG 57.805 50.000 0.00 0.00 46.56 4.35
973 981 3.010088 CACACTCGTGCGTATTCGA 57.990 52.632 0.00 0.00 36.06 3.71
1015 1023 2.859165 TGGGATGGAGTGTGTTCTTC 57.141 50.000 0.00 0.00 0.00 2.87
1016 1024 2.054021 TGGGATGGAGTGTGTTCTTCA 58.946 47.619 0.00 0.00 0.00 3.02
1017 1025 2.441375 TGGGATGGAGTGTGTTCTTCAA 59.559 45.455 0.00 0.00 0.00 2.69
1018 1026 3.117701 TGGGATGGAGTGTGTTCTTCAAA 60.118 43.478 0.00 0.00 0.00 2.69
1019 1027 4.082125 GGGATGGAGTGTGTTCTTCAAAT 58.918 43.478 0.00 0.00 0.00 2.32
1020 1028 4.156739 GGGATGGAGTGTGTTCTTCAAATC 59.843 45.833 0.00 0.00 0.00 2.17
1021 1029 5.006386 GGATGGAGTGTGTTCTTCAAATCT 58.994 41.667 0.00 0.00 0.00 2.40
1022 1030 5.474876 GGATGGAGTGTGTTCTTCAAATCTT 59.525 40.000 0.00 0.00 0.00 2.40
1023 1031 6.348868 GGATGGAGTGTGTTCTTCAAATCTTC 60.349 42.308 0.00 0.00 0.00 2.87
1210 1223 6.930164 TCAATTACAATTTGAGTGCATTTGCT 59.070 30.769 2.79 0.00 42.66 3.91
1232 1245 6.027749 GCTGTGTAATTTGAGGGATTTTACG 58.972 40.000 0.00 0.00 0.00 3.18
1369 1382 0.531090 AAGTCGCACGGCAGTTACAA 60.531 50.000 0.00 0.00 0.00 2.41
1514 1530 9.328845 ACTGTGAAAATTGCAAATCTACAAATT 57.671 25.926 1.71 0.00 0.00 1.82
1694 1710 5.634439 TCATGCAATCACAGTGTAATTTTGC 59.366 36.000 17.75 17.75 38.68 3.68
2046 2063 4.383118 GCTAGAGCTATGGTTTGTCTTGGA 60.383 45.833 0.00 0.00 38.21 3.53
2049 2066 5.189180 AGAGCTATGGTTTGTCTTGGATTC 58.811 41.667 0.00 0.00 0.00 2.52
2052 2069 4.142381 GCTATGGTTTGTCTTGGATTCCAC 60.142 45.833 4.45 0.00 30.78 4.02
2053 2070 3.304911 TGGTTTGTCTTGGATTCCACA 57.695 42.857 4.45 0.00 30.78 4.17
2160 2177 2.156917 CAGCTGTTCCTGCATCTTCAA 58.843 47.619 5.25 0.00 0.00 2.69
2161 2178 2.555325 CAGCTGTTCCTGCATCTTCAAA 59.445 45.455 5.25 0.00 0.00 2.69
2191 2208 3.010420 GTCAACTTCCATGTTAGGCTCC 58.990 50.000 0.00 0.00 0.00 4.70
2227 2244 2.989571 ACCTCCCAAATGTCCTCTCTTT 59.010 45.455 0.00 0.00 0.00 2.52
2282 2303 7.555639 TTTTTGTTTTCAACTGTGTAAGACG 57.444 32.000 0.00 0.00 39.73 4.18
2286 2307 5.870433 TGTTTTCAACTGTGTAAGACGAGAA 59.130 36.000 0.00 0.00 0.00 2.87
2292 2313 5.907197 ACTGTGTAAGACGAGAAATTGTG 57.093 39.130 0.00 0.00 0.00 3.33
2341 2362 8.402472 TGTCTGACCAAGTTAACATTTTTACTG 58.598 33.333 8.61 0.00 0.00 2.74
2371 2392 7.560700 CCACGAAAGCATTTTTACTTTTTACC 58.439 34.615 0.00 0.00 39.27 2.85
2389 2410 6.538945 TTTACCTTTTCCTCTGCTGTTTTT 57.461 33.333 0.00 0.00 0.00 1.94
2587 3799 3.674997 TGAGACTGTACCTTTCCATTGC 58.325 45.455 0.00 0.00 0.00 3.56
3190 4606 7.262772 CCATTGTCTAATTTCTTGATGCATGT 58.737 34.615 2.46 0.00 0.00 3.21
3222 4638 6.655078 TCTCAGTAACTAGCATGCATATCA 57.345 37.500 21.98 0.00 0.00 2.15
3231 4647 4.895224 AGCATGCATATCAGACTGTTTG 57.105 40.909 21.98 0.52 0.00 2.93
3264 5622 1.532868 GTGACATGGACTGTGACTTGC 59.467 52.381 0.00 0.00 38.75 4.01
3275 5633 1.372499 TGACTTGCACGTACTCGCC 60.372 57.895 0.00 0.00 41.18 5.54
3282 5640 1.727022 CACGTACTCGCCGTTTCGT 60.727 57.895 0.00 0.00 41.18 3.85
3291 5649 1.372997 GCCGTTTCGTGCTCTGAGA 60.373 57.895 9.28 0.00 0.00 3.27
3297 5658 3.426292 CGTTTCGTGCTCTGAGATCTACA 60.426 47.826 9.28 0.00 0.00 2.74
3312 5673 7.432059 TGAGATCTACATGCTGTTTATCTCTG 58.568 38.462 22.78 0.00 42.14 3.35
3331 5692 1.459209 TGTCAGCATTTTACAGCGACG 59.541 47.619 0.00 0.00 37.22 5.12
3377 5739 2.512692 TGTGGCTGCCAAGATAACAT 57.487 45.000 25.23 0.00 34.18 2.71
3396 5758 5.391312 ACATTACAAAACCAGGAATCTGC 57.609 39.130 0.00 0.00 39.61 4.26
3470 5832 8.705594 AGAGCCAGCTTATTGTTTAGTTATCTA 58.294 33.333 0.00 0.00 0.00 1.98
3487 5849 2.321719 TCTAACAGTGGGTGCTACACA 58.678 47.619 0.00 0.00 41.21 3.72
3771 6511 6.042093 CAGCTCTGAACCCTTATGGACTTATA 59.958 42.308 0.00 0.00 38.00 0.98
3927 6668 4.686944 GCTGGACCTGATGGATATGTTCAA 60.687 45.833 1.91 0.00 37.04 2.69
3960 6701 3.057337 CGGAAGGACCCGTCAACT 58.943 61.111 4.50 0.00 44.23 3.16
4029 6770 1.506309 GCGACAAGTGTGTGATGCCA 61.506 55.000 0.00 0.00 38.41 4.92
4060 6801 3.121406 TACCCGTGGCTGCCAAACA 62.121 57.895 25.23 4.23 34.18 2.83
4110 6854 3.264706 TCGTCCCATTGGTTCTTTGGATA 59.735 43.478 1.20 0.00 31.94 2.59
4111 6855 4.080015 TCGTCCCATTGGTTCTTTGGATAT 60.080 41.667 1.20 0.00 31.94 1.63
4112 6856 4.644685 CGTCCCATTGGTTCTTTGGATATT 59.355 41.667 1.20 0.00 31.94 1.28
4154 6898 6.475504 TCTGAGAAGAATGAAGGTGCATTAA 58.524 36.000 0.00 0.00 38.53 1.40
4185 6929 5.178797 TGCTTCTAGTCTAGTTTTCATGGC 58.821 41.667 6.77 2.77 0.00 4.40
4186 6930 5.046304 TGCTTCTAGTCTAGTTTTCATGGCT 60.046 40.000 6.77 0.00 0.00 4.75
4221 6965 5.009010 CACCTTGTTTATGAAACTCTGCACT 59.991 40.000 3.92 0.00 41.90 4.40
4258 7002 3.621461 CGGCCCTCAACCAAGTAATTAGT 60.621 47.826 0.00 0.00 0.00 2.24
4315 7059 2.083774 ACACCCTGATGCATGTAAACG 58.916 47.619 2.46 0.00 0.00 3.60
4321 7065 0.100503 GATGCATGTAAACGGTGCCC 59.899 55.000 2.46 0.00 38.06 5.36
4603 7353 3.209091 AACGATCCTCCGGTGATCT 57.791 52.632 24.32 14.29 37.15 2.75
4616 7366 0.665835 GTGATCTCGACCGCAGATCT 59.334 55.000 20.88 0.00 35.87 2.75
4630 7380 4.867047 CCGCAGATCTTAGCATAGGTAATG 59.133 45.833 5.93 0.00 38.74 1.90
4631 7381 5.473931 CGCAGATCTTAGCATAGGTAATGT 58.526 41.667 5.93 0.00 37.93 2.71
4747 7502 0.749454 GCCACAGAGCCGATGGAAAT 60.749 55.000 0.00 0.00 35.33 2.17
4748 7503 1.755179 CCACAGAGCCGATGGAAATT 58.245 50.000 0.00 0.00 35.33 1.82
4759 7514 0.251916 ATGGAAATTGAGGTCGCCGA 59.748 50.000 0.00 0.00 0.00 5.54
5029 7784 1.474677 CGGCATCTTCATCAAGCTCCT 60.475 52.381 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.574516 AGTTTCAAAAGTTGATACTACAGGAAT 57.425 29.630 10.99 0.00 45.79 3.01
184 190 8.515414 ACAAATAGTTCCTGCATAAAAAGAGAC 58.485 33.333 0.00 0.00 0.00 3.36
301 307 9.320352 GGAAAAGGCATAAGTAAAGAAAAACAA 57.680 29.630 0.00 0.00 0.00 2.83
302 308 8.478877 TGGAAAAGGCATAAGTAAAGAAAAACA 58.521 29.630 0.00 0.00 0.00 2.83
303 309 8.761497 GTGGAAAAGGCATAAGTAAAGAAAAAC 58.239 33.333 0.00 0.00 0.00 2.43
314 320 3.701664 AGGAAGGTGGAAAAGGCATAAG 58.298 45.455 0.00 0.00 0.00 1.73
412 419 5.009210 GCAACTAACCACATTCTTTGTACCA 59.991 40.000 0.00 0.00 36.57 3.25
415 422 6.488344 TGATGCAACTAACCACATTCTTTGTA 59.512 34.615 0.00 0.00 36.57 2.41
610 618 6.059484 TCTAGTAAAGGTTGAACAAACAGGG 58.941 40.000 5.40 0.00 40.86 4.45
660 668 4.963276 GCTTATACAGCCATCAACAACA 57.037 40.909 0.00 0.00 43.65 3.33
688 696 3.564027 CAACGATCGGGAAGCGCC 61.564 66.667 20.98 0.00 0.00 6.53
689 697 3.564027 CCAACGATCGGGAAGCGC 61.564 66.667 20.98 0.00 0.00 5.92
690 698 1.878522 CTCCAACGATCGGGAAGCG 60.879 63.158 20.98 2.17 31.58 4.68
691 699 1.521681 CCTCCAACGATCGGGAAGC 60.522 63.158 20.98 0.00 31.58 3.86
692 700 0.460284 CACCTCCAACGATCGGGAAG 60.460 60.000 20.98 13.11 31.58 3.46
693 701 1.594833 CACCTCCAACGATCGGGAA 59.405 57.895 20.98 0.76 31.58 3.97
694 702 2.355986 CCACCTCCAACGATCGGGA 61.356 63.158 20.98 15.86 0.00 5.14
695 703 1.324740 TACCACCTCCAACGATCGGG 61.325 60.000 20.98 12.11 0.00 5.14
696 704 0.102481 CTACCACCTCCAACGATCGG 59.898 60.000 20.98 1.81 0.00 4.18
697 705 0.815734 ACTACCACCTCCAACGATCG 59.184 55.000 14.88 14.88 0.00 3.69
698 706 3.181478 CCTAACTACCACCTCCAACGATC 60.181 52.174 0.00 0.00 0.00 3.69
699 707 2.764572 CCTAACTACCACCTCCAACGAT 59.235 50.000 0.00 0.00 0.00 3.73
700 708 2.173519 CCTAACTACCACCTCCAACGA 58.826 52.381 0.00 0.00 0.00 3.85
701 709 1.405121 GCCTAACTACCACCTCCAACG 60.405 57.143 0.00 0.00 0.00 4.10
702 710 1.405121 CGCCTAACTACCACCTCCAAC 60.405 57.143 0.00 0.00 0.00 3.77
703 711 0.899720 CGCCTAACTACCACCTCCAA 59.100 55.000 0.00 0.00 0.00 3.53
704 712 0.251922 ACGCCTAACTACCACCTCCA 60.252 55.000 0.00 0.00 0.00 3.86
705 713 0.175073 CACGCCTAACTACCACCTCC 59.825 60.000 0.00 0.00 0.00 4.30
706 714 0.893447 ACACGCCTAACTACCACCTC 59.107 55.000 0.00 0.00 0.00 3.85
707 715 0.893447 GACACGCCTAACTACCACCT 59.107 55.000 0.00 0.00 0.00 4.00
708 716 0.457337 CGACACGCCTAACTACCACC 60.457 60.000 0.00 0.00 0.00 4.61
709 717 0.242017 ACGACACGCCTAACTACCAC 59.758 55.000 0.00 0.00 0.00 4.16
710 718 0.523072 GACGACACGCCTAACTACCA 59.477 55.000 0.00 0.00 0.00 3.25
711 719 0.523072 TGACGACACGCCTAACTACC 59.477 55.000 0.00 0.00 0.00 3.18
712 720 1.611043 GTGACGACACGCCTAACTAC 58.389 55.000 1.56 0.00 37.28 2.73
714 722 4.959446 GTGACGACACGCCTAACT 57.041 55.556 1.56 0.00 37.28 2.24
722 730 0.957395 TCTACCCTCCGTGACGACAC 60.957 60.000 6.54 8.00 42.88 3.67
723 731 0.675837 CTCTACCCTCCGTGACGACA 60.676 60.000 6.54 0.00 0.00 4.35
724 732 1.991099 GCTCTACCCTCCGTGACGAC 61.991 65.000 6.54 0.00 0.00 4.34
725 733 1.748122 GCTCTACCCTCCGTGACGA 60.748 63.158 6.54 0.00 0.00 4.20
726 734 1.313812 AAGCTCTACCCTCCGTGACG 61.314 60.000 0.00 0.00 0.00 4.35
727 735 0.173708 CAAGCTCTACCCTCCGTGAC 59.826 60.000 0.00 0.00 0.00 3.67
728 736 0.970937 CCAAGCTCTACCCTCCGTGA 60.971 60.000 0.00 0.00 0.00 4.35
729 737 1.517832 CCAAGCTCTACCCTCCGTG 59.482 63.158 0.00 0.00 0.00 4.94
730 738 2.359967 GCCAAGCTCTACCCTCCGT 61.360 63.158 0.00 0.00 0.00 4.69
731 739 2.303549 CTGCCAAGCTCTACCCTCCG 62.304 65.000 0.00 0.00 0.00 4.63
732 740 1.524482 CTGCCAAGCTCTACCCTCC 59.476 63.158 0.00 0.00 0.00 4.30
733 741 1.153269 GCTGCCAAGCTCTACCCTC 60.153 63.158 0.00 0.00 46.60 4.30
734 742 2.993853 GCTGCCAAGCTCTACCCT 59.006 61.111 0.00 0.00 46.60 4.34
753 761 2.747855 CCCTTCAACAGGCTCGCC 60.748 66.667 0.00 0.00 42.29 5.54
754 762 2.032681 ACCCTTCAACAGGCTCGC 59.967 61.111 0.00 0.00 42.29 5.03
755 763 0.250295 TTCACCCTTCAACAGGCTCG 60.250 55.000 0.00 0.00 42.29 5.03
756 764 1.202818 ACTTCACCCTTCAACAGGCTC 60.203 52.381 0.00 0.00 42.29 4.70
757 765 0.846693 ACTTCACCCTTCAACAGGCT 59.153 50.000 0.00 0.00 42.29 4.58
758 766 2.038557 TCTACTTCACCCTTCAACAGGC 59.961 50.000 0.00 0.00 42.29 4.85
759 767 4.559862 ATCTACTTCACCCTTCAACAGG 57.440 45.455 0.00 0.00 43.49 4.00
760 768 5.112686 GCTATCTACTTCACCCTTCAACAG 58.887 45.833 0.00 0.00 0.00 3.16
761 769 4.530553 TGCTATCTACTTCACCCTTCAACA 59.469 41.667 0.00 0.00 0.00 3.33
762 770 4.870991 GTGCTATCTACTTCACCCTTCAAC 59.129 45.833 0.00 0.00 0.00 3.18
763 771 4.381612 CGTGCTATCTACTTCACCCTTCAA 60.382 45.833 0.00 0.00 0.00 2.69
764 772 3.130516 CGTGCTATCTACTTCACCCTTCA 59.869 47.826 0.00 0.00 0.00 3.02
765 773 3.130693 ACGTGCTATCTACTTCACCCTTC 59.869 47.826 0.00 0.00 0.00 3.46
766 774 3.097614 ACGTGCTATCTACTTCACCCTT 58.902 45.455 0.00 0.00 0.00 3.95
767 775 2.736347 ACGTGCTATCTACTTCACCCT 58.264 47.619 0.00 0.00 0.00 4.34
768 776 3.521947 AACGTGCTATCTACTTCACCC 57.478 47.619 0.00 0.00 0.00 4.61
769 777 4.491676 TCAAACGTGCTATCTACTTCACC 58.508 43.478 0.00 0.00 0.00 4.02
770 778 5.634020 AGTTCAAACGTGCTATCTACTTCAC 59.366 40.000 0.00 0.00 0.00 3.18
771 779 5.779922 AGTTCAAACGTGCTATCTACTTCA 58.220 37.500 0.00 0.00 0.00 3.02
772 780 6.586844 AGAAGTTCAAACGTGCTATCTACTTC 59.413 38.462 5.50 0.00 39.28 3.01
773 781 6.456501 AGAAGTTCAAACGTGCTATCTACTT 58.543 36.000 5.50 0.00 0.00 2.24
774 782 6.026947 AGAAGTTCAAACGTGCTATCTACT 57.973 37.500 5.50 0.00 0.00 2.57
775 783 5.003590 CGAGAAGTTCAAACGTGCTATCTAC 59.996 44.000 5.50 0.00 0.00 2.59
776 784 5.093457 CGAGAAGTTCAAACGTGCTATCTA 58.907 41.667 5.50 0.00 0.00 1.98
777 785 3.921021 CGAGAAGTTCAAACGTGCTATCT 59.079 43.478 5.50 0.00 0.00 1.98
778 786 3.673809 ACGAGAAGTTCAAACGTGCTATC 59.326 43.478 17.18 0.00 35.91 2.08
779 787 3.428870 CACGAGAAGTTCAAACGTGCTAT 59.571 43.478 24.89 5.08 45.07 2.97
780 788 2.792674 CACGAGAAGTTCAAACGTGCTA 59.207 45.455 24.89 0.00 45.07 3.49
781 789 1.593006 CACGAGAAGTTCAAACGTGCT 59.407 47.619 24.89 5.60 45.07 4.40
782 790 2.005188 CACGAGAAGTTCAAACGTGC 57.995 50.000 24.89 1.65 45.07 5.34
784 792 1.578583 CCCACGAGAAGTTCAAACGT 58.421 50.000 5.50 10.70 37.68 3.99
785 793 0.865769 CCCCACGAGAAGTTCAAACG 59.134 55.000 5.50 10.09 0.00 3.60
786 794 1.602377 CACCCCACGAGAAGTTCAAAC 59.398 52.381 5.50 0.00 0.00 2.93
787 795 1.476110 CCACCCCACGAGAAGTTCAAA 60.476 52.381 5.50 0.00 0.00 2.69
788 796 0.107831 CCACCCCACGAGAAGTTCAA 59.892 55.000 5.50 0.00 0.00 2.69
789 797 1.752198 CCACCCCACGAGAAGTTCA 59.248 57.895 5.50 0.00 0.00 3.18
790 798 1.003718 CCCACCCCACGAGAAGTTC 60.004 63.158 0.00 0.00 0.00 3.01
791 799 3.157680 CCCACCCCACGAGAAGTT 58.842 61.111 0.00 0.00 0.00 2.66
792 800 3.637273 GCCCACCCCACGAGAAGT 61.637 66.667 0.00 0.00 0.00 3.01
793 801 4.760047 CGCCCACCCCACGAGAAG 62.760 72.222 0.00 0.00 0.00 2.85
804 812 3.665675 CTACTCACTGCCCGCCCAC 62.666 68.421 0.00 0.00 0.00 4.61
805 813 3.390521 CTACTCACTGCCCGCCCA 61.391 66.667 0.00 0.00 0.00 5.36
806 814 3.372554 GACTACTCACTGCCCGCCC 62.373 68.421 0.00 0.00 0.00 6.13
807 815 2.184579 GACTACTCACTGCCCGCC 59.815 66.667 0.00 0.00 0.00 6.13
808 816 2.184579 GGACTACTCACTGCCCGC 59.815 66.667 0.00 0.00 0.00 6.13
809 817 2.490217 CGGACTACTCACTGCCCG 59.510 66.667 0.00 0.00 0.00 6.13
810 818 0.682209 TACCGGACTACTCACTGCCC 60.682 60.000 9.46 0.00 0.00 5.36
811 819 1.400737 ATACCGGACTACTCACTGCC 58.599 55.000 9.46 0.00 0.00 4.85
812 820 2.223758 GGAATACCGGACTACTCACTGC 60.224 54.545 9.46 0.00 0.00 4.40
813 821 3.712091 GGAATACCGGACTACTCACTG 57.288 52.381 9.46 0.00 0.00 3.66
826 834 1.135721 ACCTACAGAACGCGGAATACC 59.864 52.381 12.47 0.00 0.00 2.73
827 835 2.190981 CACCTACAGAACGCGGAATAC 58.809 52.381 12.47 0.00 0.00 1.89
828 836 1.135527 CCACCTACAGAACGCGGAATA 59.864 52.381 12.47 0.00 0.00 1.75
829 837 0.108329 CCACCTACAGAACGCGGAAT 60.108 55.000 12.47 0.00 0.00 3.01
830 838 1.180456 TCCACCTACAGAACGCGGAA 61.180 55.000 12.47 0.00 0.00 4.30
831 839 1.592400 CTCCACCTACAGAACGCGGA 61.592 60.000 12.47 0.00 0.00 5.54
832 840 1.153823 CTCCACCTACAGAACGCGG 60.154 63.158 12.47 0.00 0.00 6.46
833 841 1.805945 GCTCCACCTACAGAACGCG 60.806 63.158 3.53 3.53 0.00 6.01
834 842 1.805945 CGCTCCACCTACAGAACGC 60.806 63.158 0.00 0.00 0.00 4.84
835 843 1.153823 CCGCTCCACCTACAGAACG 60.154 63.158 0.00 0.00 0.00 3.95
836 844 0.389948 CACCGCTCCACCTACAGAAC 60.390 60.000 0.00 0.00 0.00 3.01
837 845 1.541310 CCACCGCTCCACCTACAGAA 61.541 60.000 0.00 0.00 0.00 3.02
838 846 1.982395 CCACCGCTCCACCTACAGA 60.982 63.158 0.00 0.00 0.00 3.41
839 847 2.579201 CCACCGCTCCACCTACAG 59.421 66.667 0.00 0.00 0.00 2.74
840 848 3.000819 CCCACCGCTCCACCTACA 61.001 66.667 0.00 0.00 0.00 2.74
841 849 2.590114 AACCCACCGCTCCACCTAC 61.590 63.158 0.00 0.00 0.00 3.18
842 850 2.203877 AACCCACCGCTCCACCTA 60.204 61.111 0.00 0.00 0.00 3.08
843 851 3.953775 CAACCCACCGCTCCACCT 61.954 66.667 0.00 0.00 0.00 4.00
844 852 2.193087 ATACAACCCACCGCTCCACC 62.193 60.000 0.00 0.00 0.00 4.61
845 853 1.024579 CATACAACCCACCGCTCCAC 61.025 60.000 0.00 0.00 0.00 4.02
846 854 1.298340 CATACAACCCACCGCTCCA 59.702 57.895 0.00 0.00 0.00 3.86
847 855 2.112815 GCATACAACCCACCGCTCC 61.113 63.158 0.00 0.00 0.00 4.70
848 856 2.461110 CGCATACAACCCACCGCTC 61.461 63.158 0.00 0.00 0.00 5.03
849 857 2.435938 CGCATACAACCCACCGCT 60.436 61.111 0.00 0.00 0.00 5.52
850 858 2.329614 AACGCATACAACCCACCGC 61.330 57.895 0.00 0.00 0.00 5.68
851 859 1.231958 ACAACGCATACAACCCACCG 61.232 55.000 0.00 0.00 0.00 4.94
852 860 0.239879 CACAACGCATACAACCCACC 59.760 55.000 0.00 0.00 0.00 4.61
853 861 0.948678 ACACAACGCATACAACCCAC 59.051 50.000 0.00 0.00 0.00 4.61
854 862 1.335182 CAACACAACGCATACAACCCA 59.665 47.619 0.00 0.00 0.00 4.51
855 863 1.604755 TCAACACAACGCATACAACCC 59.395 47.619 0.00 0.00 0.00 4.11
856 864 3.233578 CATCAACACAACGCATACAACC 58.766 45.455 0.00 0.00 0.00 3.77
857 865 3.884169 ACATCAACACAACGCATACAAC 58.116 40.909 0.00 0.00 0.00 3.32
858 866 4.035675 TCAACATCAACACAACGCATACAA 59.964 37.500 0.00 0.00 0.00 2.41
859 867 3.561725 TCAACATCAACACAACGCATACA 59.438 39.130 0.00 0.00 0.00 2.29
860 868 4.140518 TCAACATCAACACAACGCATAC 57.859 40.909 0.00 0.00 0.00 2.39
861 869 4.215185 ACATCAACATCAACACAACGCATA 59.785 37.500 0.00 0.00 0.00 3.14
862 870 3.004629 ACATCAACATCAACACAACGCAT 59.995 39.130 0.00 0.00 0.00 4.73
863 871 2.357323 ACATCAACATCAACACAACGCA 59.643 40.909 0.00 0.00 0.00 5.24
864 872 2.998772 ACATCAACATCAACACAACGC 58.001 42.857 0.00 0.00 0.00 4.84
865 873 4.151070 GCTACATCAACATCAACACAACG 58.849 43.478 0.00 0.00 0.00 4.10
866 874 4.151070 CGCTACATCAACATCAACACAAC 58.849 43.478 0.00 0.00 0.00 3.32
867 875 3.812609 ACGCTACATCAACATCAACACAA 59.187 39.130 0.00 0.00 0.00 3.33
868 876 3.398406 ACGCTACATCAACATCAACACA 58.602 40.909 0.00 0.00 0.00 3.72
869 877 4.404507 AACGCTACATCAACATCAACAC 57.595 40.909 0.00 0.00 0.00 3.32
870 878 6.203915 AGTTAAACGCTACATCAACATCAACA 59.796 34.615 0.00 0.00 0.00 3.33
871 879 6.599437 AGTTAAACGCTACATCAACATCAAC 58.401 36.000 0.00 0.00 0.00 3.18
872 880 6.649141 AGAGTTAAACGCTACATCAACATCAA 59.351 34.615 0.00 0.00 0.00 2.57
873 881 6.163476 AGAGTTAAACGCTACATCAACATCA 58.837 36.000 0.00 0.00 0.00 3.07
874 882 6.648725 AGAGTTAAACGCTACATCAACATC 57.351 37.500 0.00 0.00 0.00 3.06
875 883 7.764443 ACATAGAGTTAAACGCTACATCAACAT 59.236 33.333 0.00 0.00 33.46 2.71
876 884 7.094631 ACATAGAGTTAAACGCTACATCAACA 58.905 34.615 0.00 0.00 33.46 3.33
877 885 7.521509 ACATAGAGTTAAACGCTACATCAAC 57.478 36.000 0.00 0.00 33.46 3.18
878 886 9.079833 GTTACATAGAGTTAAACGCTACATCAA 57.920 33.333 0.00 0.00 33.46 2.57
879 887 8.245491 TGTTACATAGAGTTAAACGCTACATCA 58.755 33.333 0.00 0.00 33.46 3.07
880 888 8.624701 TGTTACATAGAGTTAAACGCTACATC 57.375 34.615 0.00 0.00 33.46 3.06
881 889 9.245962 GATGTTACATAGAGTTAAACGCTACAT 57.754 33.333 0.00 0.00 33.46 2.29
882 890 8.245491 TGATGTTACATAGAGTTAAACGCTACA 58.755 33.333 0.00 0.00 33.46 2.74
883 891 8.624701 TGATGTTACATAGAGTTAAACGCTAC 57.375 34.615 0.00 0.00 33.46 3.58
884 892 9.079833 GTTGATGTTACATAGAGTTAAACGCTA 57.920 33.333 0.00 0.00 35.07 4.26
885 893 7.201410 CGTTGATGTTACATAGAGTTAAACGCT 60.201 37.037 0.00 0.00 31.78 5.07
886 894 6.892951 CGTTGATGTTACATAGAGTTAAACGC 59.107 38.462 0.00 0.00 30.73 4.84
887 895 7.062605 ACCGTTGATGTTACATAGAGTTAAACG 59.937 37.037 0.00 6.50 36.28 3.60
888 896 8.166706 CACCGTTGATGTTACATAGAGTTAAAC 58.833 37.037 0.00 0.00 0.00 2.01
889 897 7.332430 CCACCGTTGATGTTACATAGAGTTAAA 59.668 37.037 0.00 0.00 0.00 1.52
890 898 6.814644 CCACCGTTGATGTTACATAGAGTTAA 59.185 38.462 0.00 0.00 0.00 2.01
891 899 6.071221 ACCACCGTTGATGTTACATAGAGTTA 60.071 38.462 0.00 0.00 0.00 2.24
892 900 5.175859 CCACCGTTGATGTTACATAGAGTT 58.824 41.667 0.00 0.00 0.00 3.01
893 901 4.222145 ACCACCGTTGATGTTACATAGAGT 59.778 41.667 0.00 0.00 0.00 3.24
894 902 4.755411 ACCACCGTTGATGTTACATAGAG 58.245 43.478 0.00 0.00 0.00 2.43
895 903 4.675933 CGACCACCGTTGATGTTACATAGA 60.676 45.833 0.00 0.00 0.00 1.98
896 904 3.550275 CGACCACCGTTGATGTTACATAG 59.450 47.826 0.00 0.00 0.00 2.23
897 905 3.513662 CGACCACCGTTGATGTTACATA 58.486 45.455 0.00 0.00 0.00 2.29
898 906 2.343101 CGACCACCGTTGATGTTACAT 58.657 47.619 0.00 0.00 0.00 2.29
899 907 1.605968 CCGACCACCGTTGATGTTACA 60.606 52.381 0.00 0.00 36.31 2.41
900 908 1.073177 CCGACCACCGTTGATGTTAC 58.927 55.000 0.00 0.00 36.31 2.50
901 909 0.037139 CCCGACCACCGTTGATGTTA 60.037 55.000 0.00 0.00 36.31 2.41
902 910 1.302192 CCCGACCACCGTTGATGTT 60.302 57.895 0.00 0.00 36.31 2.71
903 911 1.550130 ATCCCGACCACCGTTGATGT 61.550 55.000 0.00 0.00 36.31 3.06
904 912 0.392461 AATCCCGACCACCGTTGATG 60.392 55.000 0.00 0.00 36.31 3.07
905 913 0.107848 GAATCCCGACCACCGTTGAT 60.108 55.000 0.00 0.00 36.31 2.57
906 914 1.189524 AGAATCCCGACCACCGTTGA 61.190 55.000 0.00 0.00 36.31 3.18
907 915 0.321298 AAGAATCCCGACCACCGTTG 60.321 55.000 0.00 0.00 36.31 4.10
908 916 0.036671 GAAGAATCCCGACCACCGTT 60.037 55.000 0.00 0.00 36.31 4.44
909 917 1.595357 GAAGAATCCCGACCACCGT 59.405 57.895 0.00 0.00 36.31 4.83
910 918 1.153429 GGAAGAATCCCGACCACCG 60.153 63.158 0.00 0.00 40.10 4.94
911 919 4.957164 GGAAGAATCCCGACCACC 57.043 61.111 0.00 0.00 40.10 4.61
928 936 6.694445 ATCATCTTGTATAGAAGAAGGGGG 57.306 41.667 15.57 4.85 34.53 5.40
929 937 7.316640 CGTATCATCTTGTATAGAAGAAGGGG 58.683 42.308 15.57 6.93 34.53 4.79
930 938 6.809196 GCGTATCATCTTGTATAGAAGAAGGG 59.191 42.308 15.57 9.04 34.53 3.95
931 939 7.327275 GTGCGTATCATCTTGTATAGAAGAAGG 59.673 40.741 15.57 11.19 34.53 3.46
932 940 7.862873 TGTGCGTATCATCTTGTATAGAAGAAG 59.137 37.037 15.57 11.72 34.53 2.85
933 941 7.648112 GTGTGCGTATCATCTTGTATAGAAGAA 59.352 37.037 15.57 1.80 34.53 2.52
934 942 7.013369 AGTGTGCGTATCATCTTGTATAGAAGA 59.987 37.037 14.14 14.14 36.22 2.87
935 943 7.142021 AGTGTGCGTATCATCTTGTATAGAAG 58.858 38.462 3.22 3.22 36.22 2.85
936 944 7.039313 AGTGTGCGTATCATCTTGTATAGAA 57.961 36.000 0.00 0.00 36.22 2.10
937 945 6.565999 CGAGTGTGCGTATCATCTTGTATAGA 60.566 42.308 0.00 0.00 37.28 1.98
938 946 5.565638 CGAGTGTGCGTATCATCTTGTATAG 59.434 44.000 0.00 0.00 0.00 1.31
939 947 5.008316 ACGAGTGTGCGTATCATCTTGTATA 59.992 40.000 0.00 0.00 43.61 1.47
940 948 4.202020 ACGAGTGTGCGTATCATCTTGTAT 60.202 41.667 0.00 0.00 43.61 2.29
941 949 3.128068 ACGAGTGTGCGTATCATCTTGTA 59.872 43.478 0.00 0.00 43.61 2.41
942 950 2.094700 ACGAGTGTGCGTATCATCTTGT 60.095 45.455 0.00 0.00 43.61 3.16
943 951 2.279921 CACGAGTGTGCGTATCATCTTG 59.720 50.000 0.00 0.00 43.59 3.02
944 952 2.530177 CACGAGTGTGCGTATCATCTT 58.470 47.619 0.00 0.00 43.59 2.40
945 953 2.194800 CACGAGTGTGCGTATCATCT 57.805 50.000 0.00 0.00 43.59 2.90
955 963 0.907837 CTCGAATACGCACGAGTGTG 59.092 55.000 14.40 14.40 46.90 3.82
956 964 3.307829 CTCGAATACGCACGAGTGT 57.692 52.632 4.12 4.12 46.90 3.55
960 968 2.905959 TCTTTCTCGAATACGCACGA 57.094 45.000 0.00 0.00 39.58 4.35
961 969 3.303495 ACATTCTTTCTCGAATACGCACG 59.697 43.478 0.00 0.00 39.58 5.34
962 970 4.842139 ACATTCTTTCTCGAATACGCAC 57.158 40.909 0.00 0.00 39.58 5.34
963 971 7.276878 TGAATAACATTCTTTCTCGAATACGCA 59.723 33.333 1.01 0.00 39.58 5.24
964 972 7.618442 TGAATAACATTCTTTCTCGAATACGC 58.382 34.615 1.01 0.00 39.58 4.42
965 973 9.020813 TCTGAATAACATTCTTTCTCGAATACG 57.979 33.333 1.01 0.00 41.26 3.06
968 976 9.829507 ATCTCTGAATAACATTCTTTCTCGAAT 57.170 29.630 1.01 0.00 34.07 3.34
973 981 9.790344 CCCATATCTCTGAATAACATTCTTTCT 57.210 33.333 1.01 0.00 0.00 2.52
974 982 9.784531 TCCCATATCTCTGAATAACATTCTTTC 57.215 33.333 1.01 0.00 0.00 2.62
1015 1023 7.594015 CCTCAGTTCTGACAAAATGAAGATTTG 59.406 37.037 0.00 0.00 42.18 2.32
1016 1024 7.286316 ACCTCAGTTCTGACAAAATGAAGATTT 59.714 33.333 0.00 0.00 33.35 2.17
1017 1025 6.774656 ACCTCAGTTCTGACAAAATGAAGATT 59.225 34.615 0.00 0.00 33.35 2.40
1018 1026 6.302269 ACCTCAGTTCTGACAAAATGAAGAT 58.698 36.000 0.00 0.00 33.35 2.40
1019 1027 5.684704 ACCTCAGTTCTGACAAAATGAAGA 58.315 37.500 0.00 0.00 33.35 2.87
1020 1028 5.049129 GGACCTCAGTTCTGACAAAATGAAG 60.049 44.000 0.00 1.09 33.35 3.02
1021 1029 4.821805 GGACCTCAGTTCTGACAAAATGAA 59.178 41.667 0.00 0.00 33.35 2.57
1022 1030 4.389374 GGACCTCAGTTCTGACAAAATGA 58.611 43.478 0.00 0.00 32.81 2.57
1023 1031 3.503748 GGGACCTCAGTTCTGACAAAATG 59.496 47.826 0.00 0.00 0.00 2.32
1210 1223 7.513371 AACGTAAAATCCCTCAAATTACACA 57.487 32.000 0.00 0.00 0.00 3.72
1369 1382 9.198837 CAAATAAAATTGCCCTAAAAAGTACGT 57.801 29.630 0.00 0.00 0.00 3.57
1410 1423 6.762187 TGTTACTCGACAAAGACAAACCAATA 59.238 34.615 0.00 0.00 0.00 1.90
1411 1424 5.587043 TGTTACTCGACAAAGACAAACCAAT 59.413 36.000 0.00 0.00 0.00 3.16
1650 1666 9.237187 TGCATGAGTACACCTTCAAAATTATTA 57.763 29.630 0.00 0.00 0.00 0.98
1694 1710 6.785191 TGACTCTTGCAAACTAACAAAAGAG 58.215 36.000 0.00 8.32 43.92 2.85
2046 2063 6.206243 GCATATGAAAGACTAGCATGTGGAAT 59.794 38.462 6.97 0.00 33.47 3.01
2049 2066 5.061853 AGCATATGAAAGACTAGCATGTGG 58.938 41.667 6.97 0.00 33.47 4.17
2052 2069 8.996271 TGAATAAGCATATGAAAGACTAGCATG 58.004 33.333 6.97 0.00 0.00 4.06
2053 2070 9.736414 ATGAATAAGCATATGAAAGACTAGCAT 57.264 29.630 6.97 0.00 0.00 3.79
2160 2177 4.348168 ACATGGAAGTTGACTACAGTCCTT 59.652 41.667 6.91 4.13 44.15 3.36
2161 2178 3.904339 ACATGGAAGTTGACTACAGTCCT 59.096 43.478 6.91 0.00 44.15 3.85
2191 2208 3.517901 TGGGAGGTGTTTATACAGAGGTG 59.482 47.826 0.00 0.00 34.24 4.00
2264 2285 6.971527 TTTCTCGTCTTACACAGTTGAAAA 57.028 33.333 0.00 0.00 0.00 2.29
2265 2286 7.065324 ACAATTTCTCGTCTTACACAGTTGAAA 59.935 33.333 0.00 0.00 0.00 2.69
2269 2290 6.046593 TCACAATTTCTCGTCTTACACAGTT 58.953 36.000 0.00 0.00 0.00 3.16
2282 2303 4.156739 GGTTGGATGTCCTCACAATTTCTC 59.843 45.833 0.09 0.00 35.64 2.87
2286 2307 3.814504 AGGTTGGATGTCCTCACAATT 57.185 42.857 0.09 0.00 35.64 2.32
2292 2313 2.507471 AGGATCAAGGTTGGATGTCCTC 59.493 50.000 0.09 0.00 36.82 3.71
2341 2362 2.997485 AAAATGCTTTCGTGGCTCTC 57.003 45.000 0.00 0.00 0.00 3.20
2389 2410 2.656069 GGGTCGTAGGCTCCTGCAA 61.656 63.158 4.93 0.00 41.91 4.08
2466 2930 5.367937 AGTGATTCATCCTTACCACATAGCT 59.632 40.000 0.00 0.00 0.00 3.32
2587 3799 2.630158 CTGGCTGATGGAGAGTTCAAG 58.370 52.381 0.00 0.00 0.00 3.02
2967 4185 0.107214 GCCACAGCATTAGCAGGGTA 60.107 55.000 0.00 0.00 45.49 3.69
3000 4218 0.741221 GTCCCTGATCGACCAACTGC 60.741 60.000 0.00 0.00 0.00 4.40
3190 4606 9.698309 GCATGCTAGTTACTGAGATATTCTTTA 57.302 33.333 11.37 0.00 0.00 1.85
3222 4638 7.275560 GTCACTGCAAAATAAAACAAACAGTCT 59.724 33.333 0.00 0.00 35.06 3.24
3231 4647 6.144402 CAGTCCATGTCACTGCAAAATAAAAC 59.856 38.462 8.66 0.00 35.15 2.43
3264 5622 1.727022 ACGAAACGGCGAGTACGTG 60.727 57.895 16.62 0.00 44.83 4.49
3267 5625 1.671880 GAGCACGAAACGGCGAGTAC 61.672 60.000 16.62 2.77 34.54 2.73
3273 5631 0.737715 ATCTCAGAGCACGAAACGGC 60.738 55.000 0.00 0.00 0.00 5.68
3275 5633 2.270275 AGATCTCAGAGCACGAAACG 57.730 50.000 0.00 0.00 0.00 3.60
3282 5640 3.729862 CAGCATGTAGATCTCAGAGCA 57.270 47.619 0.00 0.00 0.00 4.26
3312 5673 1.459592 ACGTCGCTGTAAAATGCTGAC 59.540 47.619 0.00 0.00 33.20 3.51
3318 5679 0.796312 CAGGCACGTCGCTGTAAAAT 59.204 50.000 9.31 0.00 41.91 1.82
3335 5696 0.532115 GCATTTGGGGCAGGTAACAG 59.468 55.000 0.00 0.00 41.41 3.16
3377 5739 3.482436 ACGCAGATTCCTGGTTTTGTAA 58.518 40.909 0.00 0.00 40.72 2.41
3441 5803 4.631813 ACTAAACAATAAGCTGGCTCTTCG 59.368 41.667 0.00 0.00 0.00 3.79
3470 5832 2.656947 AATGTGTAGCACCCACTGTT 57.343 45.000 0.00 0.00 32.73 3.16
3478 5840 5.243060 AGTTTCCCCTAAAAATGTGTAGCAC 59.757 40.000 0.00 0.00 34.56 4.40
3487 5849 7.709601 AGATAAGGTGAGTTTCCCCTAAAAAT 58.290 34.615 0.00 0.00 0.00 1.82
3771 6511 0.617413 CAGGGATGAGGTGCTCACTT 59.383 55.000 0.00 0.00 43.63 3.16
3927 6668 3.829601 CCTTCCGGAATAGTAGCTCAGAT 59.170 47.826 19.21 0.00 0.00 2.90
4025 6766 1.987306 TACGCATCTGGAGGTGGCA 60.987 57.895 1.17 0.00 0.00 4.92
4029 6770 2.423898 CGGGTACGCATCTGGAGGT 61.424 63.158 10.84 0.00 0.00 3.85
4060 6801 2.178912 ACGGTTGATTTCGTGGATGT 57.821 45.000 0.00 0.00 38.25 3.06
4110 6854 5.841237 TCAGAAGTAGGGATTAGCTAGCAAT 59.159 40.000 18.83 14.08 0.00 3.56
4111 6855 5.208890 TCAGAAGTAGGGATTAGCTAGCAA 58.791 41.667 18.83 9.68 0.00 3.91
4112 6856 4.804597 TCAGAAGTAGGGATTAGCTAGCA 58.195 43.478 18.83 0.00 0.00 3.49
4154 6898 9.810545 GAAAACTAGACTAGAAGCATGTCTTAT 57.189 33.333 16.55 0.00 40.86 1.73
4221 6965 2.031120 GGGCCGAATGAAATGATTCCA 58.969 47.619 0.00 0.00 34.49 3.53
4258 7002 4.103469 TCTGCAGGAAAGTTTAACAGGGTA 59.897 41.667 15.13 0.00 0.00 3.69
4292 7036 2.696989 TACATGCATCAGGGTGTCAG 57.303 50.000 0.00 0.00 0.00 3.51
4474 7218 2.996621 GTGTAGTGGAAGCAGATGACAC 59.003 50.000 0.00 0.00 0.00 3.67
4477 7221 1.204704 CGGTGTAGTGGAAGCAGATGA 59.795 52.381 0.00 0.00 0.00 2.92
4525 7269 0.183971 TTTTCCCTTGCCGGAGAACA 59.816 50.000 5.05 0.00 32.13 3.18
4603 7353 1.032794 ATGCTAAGATCTGCGGTCGA 58.967 50.000 0.00 0.00 0.00 4.20
4616 7366 6.661377 TCAGGCAAAAACATTACCTATGCTAA 59.339 34.615 0.00 0.00 37.81 3.09
4630 7380 2.959030 AGGGAAGTTCTCAGGCAAAAAC 59.041 45.455 5.34 0.00 0.00 2.43
4631 7381 3.312736 AGGGAAGTTCTCAGGCAAAAA 57.687 42.857 5.34 0.00 0.00 1.94
4733 7488 1.561542 ACCTCAATTTCCATCGGCTCT 59.438 47.619 0.00 0.00 0.00 4.09
4747 7502 3.744719 CCTCGTCGGCGACCTCAA 61.745 66.667 31.86 15.23 42.81 3.02
4748 7503 4.710167 TCCTCGTCGGCGACCTCA 62.710 66.667 31.86 16.33 42.81 3.86
5029 7784 3.905454 TGGAGCTTGAAGCCCAGA 58.095 55.556 19.09 2.89 43.77 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.