Multiple sequence alignment - TraesCS3B01G441600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G441600 | chr3B | 100.000 | 4030 | 0 | 0 | 1 | 4030 | 681097302 | 681101331 | 0.000000e+00 | 7443.0 |
1 | TraesCS3B01G441600 | chr3B | 95.312 | 64 | 3 | 0 | 2414 | 2477 | 55770390 | 55770327 | 7.130000e-18 | 102.0 |
2 | TraesCS3B01G441600 | chr3B | 85.263 | 95 | 6 | 4 | 2381 | 2473 | 531401374 | 531401462 | 1.540000e-14 | 91.6 |
3 | TraesCS3B01G441600 | chr3D | 93.867 | 2397 | 104 | 21 | 2 | 2386 | 517274052 | 517276417 | 0.000000e+00 | 3572.0 |
4 | TraesCS3B01G441600 | chr3D | 95.866 | 895 | 30 | 3 | 2470 | 3357 | 517276416 | 517277310 | 0.000000e+00 | 1441.0 |
5 | TraesCS3B01G441600 | chr3D | 94.737 | 551 | 27 | 1 | 3480 | 4030 | 517278574 | 517279122 | 0.000000e+00 | 856.0 |
6 | TraesCS3B01G441600 | chr3D | 94.378 | 249 | 11 | 2 | 3361 | 3609 | 517278324 | 517278569 | 2.940000e-101 | 379.0 |
7 | TraesCS3B01G441600 | chr3A | 93.552 | 2404 | 107 | 28 | 4 | 2383 | 653240885 | 653243264 | 0.000000e+00 | 3537.0 |
8 | TraesCS3B01G441600 | chr3A | 94.723 | 1573 | 66 | 9 | 2469 | 4030 | 653243265 | 653244831 | 0.000000e+00 | 2429.0 |
9 | TraesCS3B01G441600 | chr5D | 90.110 | 91 | 4 | 2 | 2388 | 2473 | 7627239 | 7627149 | 3.290000e-21 | 113.0 |
10 | TraesCS3B01G441600 | chr5D | 92.683 | 41 | 3 | 0 | 2377 | 2417 | 372452954 | 372452914 | 4.350000e-05 | 60.2 |
11 | TraesCS3B01G441600 | chr6D | 95.522 | 67 | 1 | 2 | 2415 | 2480 | 42565320 | 42565385 | 5.510000e-19 | 106.0 |
12 | TraesCS3B01G441600 | chr4A | 92.958 | 71 | 2 | 1 | 2415 | 2485 | 731368205 | 731368272 | 2.560000e-17 | 100.0 |
13 | TraesCS3B01G441600 | chr2B | 91.781 | 73 | 3 | 3 | 2415 | 2485 | 639288134 | 639288205 | 9.220000e-17 | 99.0 |
14 | TraesCS3B01G441600 | chr2B | 100.000 | 34 | 0 | 0 | 2384 | 2417 | 493983902 | 493983935 | 3.360000e-06 | 63.9 |
15 | TraesCS3B01G441600 | chr1B | 92.754 | 69 | 3 | 2 | 2415 | 2482 | 488538994 | 488538927 | 9.220000e-17 | 99.0 |
16 | TraesCS3B01G441600 | chr2D | 91.549 | 71 | 5 | 1 | 2415 | 2485 | 240791079 | 240791010 | 3.320000e-16 | 97.1 |
17 | TraesCS3B01G441600 | chr1D | 84.615 | 91 | 10 | 4 | 2382 | 2471 | 493948373 | 493948460 | 2.000000e-13 | 87.9 |
18 | TraesCS3B01G441600 | chr6A | 93.617 | 47 | 2 | 1 | 2371 | 2417 | 442254553 | 442254508 | 7.230000e-08 | 69.4 |
19 | TraesCS3B01G441600 | chr5B | 97.500 | 40 | 1 | 0 | 2370 | 2409 | 442819601 | 442819562 | 7.230000e-08 | 69.4 |
20 | TraesCS3B01G441600 | chr1A | 97.368 | 38 | 1 | 0 | 2377 | 2414 | 127116382 | 127116419 | 9.350000e-07 | 65.8 |
21 | TraesCS3B01G441600 | chr6B | 100.000 | 31 | 0 | 0 | 2384 | 2414 | 21080094 | 21080124 | 1.560000e-04 | 58.4 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G441600 | chr3B | 681097302 | 681101331 | 4029 | False | 7443 | 7443 | 100.0000 | 1 | 4030 | 1 | chr3B.!!$F2 | 4029 |
1 | TraesCS3B01G441600 | chr3D | 517274052 | 517279122 | 5070 | False | 1562 | 3572 | 94.7120 | 2 | 4030 | 4 | chr3D.!!$F1 | 4028 |
2 | TraesCS3B01G441600 | chr3A | 653240885 | 653244831 | 3946 | False | 2983 | 3537 | 94.1375 | 4 | 4030 | 2 | chr3A.!!$F1 | 4026 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
451 | 468 | 0.232303 | GTCTCCGCGTTTCTTGTGTG | 59.768 | 55.0 | 4.92 | 0.0 | 0.00 | 3.82 | F |
1249 | 1286 | 0.111061 | AACACCCTGCTCTGATGCAA | 59.889 | 50.0 | 0.00 | 0.0 | 42.83 | 4.08 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2211 | 2248 | 0.824109 | TCACCATACGAAGGAGCTGG | 59.176 | 55.0 | 0.0 | 0.0 | 0.00 | 4.85 | R |
3113 | 3158 | 0.322975 | TCAGCCAAGAACTCCTCTGC | 59.677 | 55.0 | 0.0 | 0.0 | 33.37 | 4.26 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
85 | 86 | 1.806623 | CGTGTAGGGTCAAGCTATGGC | 60.807 | 57.143 | 0.00 | 0.00 | 39.06 | 4.40 |
141 | 143 | 3.006677 | GGCCCTTGGAGTGCCATA | 58.993 | 61.111 | 0.00 | 0.00 | 45.46 | 2.74 |
148 | 150 | 1.945394 | CTTGGAGTGCCATAGTGATGC | 59.055 | 52.381 | 0.00 | 0.00 | 45.46 | 3.91 |
163 | 165 | 0.692419 | GATGCTCAGAGGGGAAGGGA | 60.692 | 60.000 | 0.00 | 0.00 | 0.00 | 4.20 |
177 | 186 | 3.116091 | AGGGAAGCACCTTGTGTTG | 57.884 | 52.632 | 0.00 | 0.00 | 37.69 | 3.33 |
178 | 187 | 0.550914 | AGGGAAGCACCTTGTGTTGA | 59.449 | 50.000 | 0.00 | 0.00 | 37.69 | 3.18 |
179 | 188 | 1.145738 | AGGGAAGCACCTTGTGTTGAT | 59.854 | 47.619 | 0.00 | 0.00 | 37.69 | 2.57 |
180 | 189 | 1.270550 | GGGAAGCACCTTGTGTTGATG | 59.729 | 52.381 | 0.00 | 0.00 | 38.98 | 3.07 |
181 | 190 | 1.336240 | GGAAGCACCTTGTGTTGATGC | 60.336 | 52.381 | 0.00 | 0.00 | 35.75 | 3.91 |
182 | 191 | 1.337703 | GAAGCACCTTGTGTTGATGCA | 59.662 | 47.619 | 0.00 | 0.00 | 38.79 | 3.96 |
196 | 205 | 7.604549 | TGTGTTGATGCAATAGTTCATGATTT | 58.395 | 30.769 | 0.00 | 0.00 | 0.00 | 2.17 |
225 | 234 | 1.205179 | TCAATTGACATGCCATGTGCC | 59.795 | 47.619 | 16.43 | 2.04 | 45.03 | 5.01 |
231 | 240 | 0.754217 | ACATGCCATGTGCCCTGATC | 60.754 | 55.000 | 10.06 | 0.00 | 43.01 | 2.92 |
262 | 271 | 9.965824 | TGAATACTTCCAAGATTTCTGTTTTTC | 57.034 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
341 | 357 | 5.899299 | AGCAAGATTTGTGCAGATTTATCC | 58.101 | 37.500 | 0.00 | 0.00 | 44.74 | 2.59 |
351 | 367 | 5.882557 | TGTGCAGATTTATCCTCTTCTTTCC | 59.117 | 40.000 | 0.00 | 0.00 | 0.00 | 3.13 |
451 | 468 | 0.232303 | GTCTCCGCGTTTCTTGTGTG | 59.768 | 55.000 | 4.92 | 0.00 | 0.00 | 3.82 |
465 | 494 | 8.548721 | CGTTTCTTGTGTGTTAGTCTAAGATTT | 58.451 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
556 | 585 | 1.955778 | TCGGTGGTCAAGTCTTCGTTA | 59.044 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
557 | 586 | 2.030540 | TCGGTGGTCAAGTCTTCGTTAG | 60.031 | 50.000 | 0.00 | 0.00 | 0.00 | 2.34 |
577 | 606 | 7.874016 | TCGTTAGAAGTTAGGCAGTATTTTTCA | 59.126 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
579 | 608 | 9.216117 | GTTAGAAGTTAGGCAGTATTTTTCAGA | 57.784 | 33.333 | 0.00 | 0.00 | 0.00 | 3.27 |
638 | 667 | 6.144402 | CCACTTGCTAGTTGCTAAATGTTTTG | 59.856 | 38.462 | 0.00 | 0.00 | 43.37 | 2.44 |
640 | 670 | 6.918022 | ACTTGCTAGTTGCTAAATGTTTTGTC | 59.082 | 34.615 | 0.00 | 0.00 | 43.37 | 3.18 |
667 | 697 | 8.687824 | AAAATAACTTGCAACATGCTATACAC | 57.312 | 30.769 | 0.00 | 0.00 | 45.31 | 2.90 |
668 | 698 | 7.630242 | AATAACTTGCAACATGCTATACACT | 57.370 | 32.000 | 0.00 | 0.00 | 45.31 | 3.55 |
697 | 728 | 4.404073 | AGCTCCATCAGTTAACTAGTGAGG | 59.596 | 45.833 | 8.04 | 4.48 | 39.51 | 3.86 |
744 | 775 | 6.850555 | ACGAGACTATGACCTTAGTTTGTAC | 58.149 | 40.000 | 0.00 | 0.00 | 32.59 | 2.90 |
745 | 776 | 6.432162 | ACGAGACTATGACCTTAGTTTGTACA | 59.568 | 38.462 | 0.00 | 0.00 | 32.59 | 2.90 |
746 | 777 | 6.967767 | CGAGACTATGACCTTAGTTTGTACAG | 59.032 | 42.308 | 0.00 | 0.00 | 32.59 | 2.74 |
747 | 778 | 7.361885 | CGAGACTATGACCTTAGTTTGTACAGT | 60.362 | 40.741 | 0.00 | 0.00 | 32.59 | 3.55 |
748 | 779 | 7.603651 | AGACTATGACCTTAGTTTGTACAGTG | 58.396 | 38.462 | 0.00 | 0.00 | 32.59 | 3.66 |
817 | 848 | 6.124340 | ACAGGAACATCATCAAATAGCATCA | 58.876 | 36.000 | 0.00 | 0.00 | 0.00 | 3.07 |
839 | 870 | 9.599866 | CATCATGTATTCCTGTTAACAAGTAGA | 57.400 | 33.333 | 10.03 | 1.80 | 0.00 | 2.59 |
882 | 913 | 9.440773 | CATTGTTATTTAGATAGGCTGCTGATA | 57.559 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
891 | 926 | 3.258971 | AGGCTGCTGATACTTGTCTTC | 57.741 | 47.619 | 0.00 | 0.00 | 0.00 | 2.87 |
915 | 950 | 4.018490 | TGTAGGCATCACAGAAATTGCAT | 58.982 | 39.130 | 0.00 | 0.00 | 36.82 | 3.96 |
935 | 972 | 5.105392 | TGCATTGGGTTGGATTTAATCTGAC | 60.105 | 40.000 | 4.87 | 4.24 | 0.00 | 3.51 |
1041 | 1078 | 0.248012 | ACCCATCAACGACATACGCA | 59.752 | 50.000 | 0.00 | 0.00 | 46.94 | 5.24 |
1212 | 1249 | 5.477984 | TGCTGCATTTCAGAACTCCTTTTAT | 59.522 | 36.000 | 0.00 | 0.00 | 45.72 | 1.40 |
1249 | 1286 | 0.111061 | AACACCCTGCTCTGATGCAA | 59.889 | 50.000 | 0.00 | 0.00 | 42.83 | 4.08 |
1300 | 1337 | 3.070302 | GTCTCAACAGAACTCCCAGTCTT | 59.930 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
1353 | 1390 | 6.295249 | AGTAGAGTTCGATGATGAGATCAGA | 58.705 | 40.000 | 0.00 | 0.00 | 43.53 | 3.27 |
1425 | 1462 | 1.988293 | TGTTCGAAATTTCCCAGGCA | 58.012 | 45.000 | 12.54 | 2.69 | 0.00 | 4.75 |
1638 | 1675 | 2.415010 | CTCCGGCAGATGGTCTCG | 59.585 | 66.667 | 0.00 | 0.00 | 0.00 | 4.04 |
1767 | 1804 | 2.398588 | CCTCCAACCCTGTATCAGCTA | 58.601 | 52.381 | 0.00 | 0.00 | 0.00 | 3.32 |
1857 | 1894 | 2.656947 | TACTTGAAGCCTGCAAAGGT | 57.343 | 45.000 | 0.00 | 0.00 | 0.00 | 3.50 |
1925 | 1962 | 5.406780 | GCCAGTATATTACACTGATGCAGTC | 59.593 | 44.000 | 3.65 | 0.00 | 43.43 | 3.51 |
1992 | 2029 | 2.094545 | TGTGGATGATCACGAGACAGTG | 60.095 | 50.000 | 0.00 | 0.00 | 43.11 | 3.66 |
2032 | 2069 | 1.228552 | AAGGTCATTGGGCAACGCT | 60.229 | 52.632 | 0.00 | 0.00 | 37.60 | 5.07 |
2055 | 2092 | 1.004440 | GAAGCTTGCGGAGGACTGT | 60.004 | 57.895 | 2.10 | 0.00 | 0.00 | 3.55 |
2211 | 2248 | 0.921347 | CGATCATGAACGAACGGGAC | 59.079 | 55.000 | 19.51 | 0.00 | 0.00 | 4.46 |
2313 | 2350 | 7.121315 | GCTCCATTTCAGACAAGGTTAGTTATT | 59.879 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
2386 | 2423 | 6.987404 | GGATAGTTTCTCCACATCCTTTCTAC | 59.013 | 42.308 | 0.00 | 0.00 | 33.74 | 2.59 |
2387 | 2424 | 7.147637 | GGATAGTTTCTCCACATCCTTTCTACT | 60.148 | 40.741 | 0.00 | 0.00 | 33.74 | 2.57 |
2389 | 2426 | 5.046231 | AGTTTCTCCACATCCTTTCTACTCC | 60.046 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2390 | 2427 | 3.375699 | TCTCCACATCCTTTCTACTCCC | 58.624 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2392 | 2429 | 3.375699 | TCCACATCCTTTCTACTCCCTC | 58.624 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2393 | 2430 | 3.012959 | TCCACATCCTTTCTACTCCCTCT | 59.987 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
2394 | 2431 | 3.133721 | CCACATCCTTTCTACTCCCTCTG | 59.866 | 52.174 | 0.00 | 0.00 | 0.00 | 3.35 |
2396 | 2433 | 4.223923 | CACATCCTTTCTACTCCCTCTGTT | 59.776 | 45.833 | 0.00 | 0.00 | 0.00 | 3.16 |
2397 | 2434 | 4.468153 | ACATCCTTTCTACTCCCTCTGTTC | 59.532 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
2398 | 2435 | 3.442076 | TCCTTTCTACTCCCTCTGTTCC | 58.558 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
2399 | 2436 | 3.077695 | TCCTTTCTACTCCCTCTGTTCCT | 59.922 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
2400 | 2437 | 4.294168 | TCCTTTCTACTCCCTCTGTTCCTA | 59.706 | 45.833 | 0.00 | 0.00 | 0.00 | 2.94 |
2401 | 2438 | 5.024118 | CCTTTCTACTCCCTCTGTTCCTAA | 58.976 | 45.833 | 0.00 | 0.00 | 0.00 | 2.69 |
2402 | 2439 | 5.484290 | CCTTTCTACTCCCTCTGTTCCTAAA | 59.516 | 44.000 | 0.00 | 0.00 | 0.00 | 1.85 |
2403 | 2440 | 6.157123 | CCTTTCTACTCCCTCTGTTCCTAAAT | 59.843 | 42.308 | 0.00 | 0.00 | 0.00 | 1.40 |
2404 | 2441 | 7.311360 | CCTTTCTACTCCCTCTGTTCCTAAATT | 60.311 | 40.741 | 0.00 | 0.00 | 0.00 | 1.82 |
2405 | 2442 | 7.569599 | TTCTACTCCCTCTGTTCCTAAATTT | 57.430 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2406 | 2443 | 8.674925 | TTCTACTCCCTCTGTTCCTAAATTTA | 57.325 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
2407 | 2444 | 8.674925 | TCTACTCCCTCTGTTCCTAAATTTAA | 57.325 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
2408 | 2445 | 8.759782 | TCTACTCCCTCTGTTCCTAAATTTAAG | 58.240 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
2409 | 2446 | 7.331089 | ACTCCCTCTGTTCCTAAATTTAAGT | 57.669 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2410 | 2447 | 7.395617 | ACTCCCTCTGTTCCTAAATTTAAGTC | 58.604 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
2411 | 2448 | 7.237887 | ACTCCCTCTGTTCCTAAATTTAAGTCT | 59.762 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
2412 | 2449 | 7.985589 | TCCCTCTGTTCCTAAATTTAAGTCTT | 58.014 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
2413 | 2450 | 8.445588 | TCCCTCTGTTCCTAAATTTAAGTCTTT | 58.554 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
2414 | 2451 | 8.515414 | CCCTCTGTTCCTAAATTTAAGTCTTTG | 58.485 | 37.037 | 0.00 | 0.00 | 0.00 | 2.77 |
2415 | 2452 | 9.067986 | CCTCTGTTCCTAAATTTAAGTCTTTGT | 57.932 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2422 | 2459 | 9.802039 | TCCTAAATTTAAGTCTTTGTATGTGGT | 57.198 | 29.630 | 0.00 | 0.00 | 0.00 | 4.16 |
2425 | 2462 | 8.472007 | AAATTTAAGTCTTTGTATGTGGTCCA | 57.528 | 30.769 | 0.00 | 0.00 | 0.00 | 4.02 |
2426 | 2463 | 8.650143 | AATTTAAGTCTTTGTATGTGGTCCAT | 57.350 | 30.769 | 0.00 | 0.00 | 37.58 | 3.41 |
2427 | 2464 | 9.747898 | AATTTAAGTCTTTGTATGTGGTCCATA | 57.252 | 29.630 | 0.00 | 0.00 | 34.86 | 2.74 |
2428 | 2465 | 8.786826 | TTTAAGTCTTTGTATGTGGTCCATAG | 57.213 | 34.615 | 0.00 | 0.00 | 36.71 | 2.23 |
2429 | 2466 | 6.374417 | AAGTCTTTGTATGTGGTCCATAGT | 57.626 | 37.500 | 0.00 | 0.00 | 36.71 | 2.12 |
2430 | 2467 | 5.734720 | AGTCTTTGTATGTGGTCCATAGTG | 58.265 | 41.667 | 0.00 | 0.00 | 36.71 | 2.74 |
2431 | 2468 | 4.876107 | GTCTTTGTATGTGGTCCATAGTGG | 59.124 | 45.833 | 0.00 | 0.00 | 36.71 | 4.00 |
2432 | 2469 | 4.780554 | TCTTTGTATGTGGTCCATAGTGGA | 59.219 | 41.667 | 0.00 | 0.00 | 45.98 | 4.02 |
2446 | 2483 | 7.113658 | TCCATAGTGGAATCTCTACAAAGAC | 57.886 | 40.000 | 0.00 | 0.00 | 45.00 | 3.01 |
2447 | 2484 | 6.897966 | TCCATAGTGGAATCTCTACAAAGACT | 59.102 | 38.462 | 0.00 | 0.00 | 45.00 | 3.24 |
2448 | 2485 | 7.400339 | TCCATAGTGGAATCTCTACAAAGACTT | 59.600 | 37.037 | 0.00 | 0.00 | 45.00 | 3.01 |
2449 | 2486 | 8.696374 | CCATAGTGGAATCTCTACAAAGACTTA | 58.304 | 37.037 | 0.00 | 0.00 | 40.96 | 2.24 |
2465 | 2502 | 9.907229 | ACAAAGACTTATATTTAGGAAAGGAGG | 57.093 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
2466 | 2503 | 9.343539 | CAAAGACTTATATTTAGGAAAGGAGGG | 57.656 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
2467 | 2504 | 8.871570 | AAGACTTATATTTAGGAAAGGAGGGA | 57.128 | 34.615 | 0.00 | 0.00 | 0.00 | 4.20 |
2468 | 2505 | 8.499288 | AGACTTATATTTAGGAAAGGAGGGAG | 57.501 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
2469 | 2506 | 8.074991 | AGACTTATATTTAGGAAAGGAGGGAGT | 58.925 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
2470 | 2507 | 9.377238 | GACTTATATTTAGGAAAGGAGGGAGTA | 57.623 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
2471 | 2508 | 9.382307 | ACTTATATTTAGGAAAGGAGGGAGTAG | 57.618 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
2472 | 2509 | 9.603189 | CTTATATTTAGGAAAGGAGGGAGTAGA | 57.397 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
2473 | 2510 | 7.859026 | ATATTTAGGAAAGGAGGGAGTAGAC | 57.141 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2474 | 2511 | 4.687262 | TTAGGAAAGGAGGGAGTAGACA | 57.313 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
2475 | 2512 | 2.822697 | AGGAAAGGAGGGAGTAGACAC | 58.177 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
2476 | 2513 | 2.384029 | AGGAAAGGAGGGAGTAGACACT | 59.616 | 50.000 | 0.00 | 0.00 | 37.87 | 3.55 |
2511 | 2548 | 8.816894 | TCCTTTGTAGATTCTGTCTATTGACTT | 58.183 | 33.333 | 8.74 | 0.00 | 41.33 | 3.01 |
2512 | 2549 | 8.877779 | CCTTTGTAGATTCTGTCTATTGACTTG | 58.122 | 37.037 | 8.74 | 2.41 | 41.33 | 3.16 |
2513 | 2550 | 9.645059 | CTTTGTAGATTCTGTCTATTGACTTGA | 57.355 | 33.333 | 8.74 | 4.56 | 41.33 | 3.02 |
2606 | 2645 | 5.662674 | ATGACTACTACTCCGCTCTTTTT | 57.337 | 39.130 | 0.00 | 0.00 | 0.00 | 1.94 |
2717 | 2756 | 2.859273 | CTTGCGAAGGCCCTGATCGT | 62.859 | 60.000 | 16.14 | 0.00 | 38.75 | 3.73 |
2766 | 2805 | 7.272037 | TCTCTACTCATACGTCATGCAAATA | 57.728 | 36.000 | 0.00 | 0.00 | 34.35 | 1.40 |
2773 | 2818 | 7.334421 | ACTCATACGTCATGCAAATACTTCTTT | 59.666 | 33.333 | 0.00 | 0.00 | 34.35 | 2.52 |
2855 | 2900 | 2.813754 | CGAAGTTGCTGGAAAATGGAGA | 59.186 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
2906 | 2951 | 0.243636 | GCCCATTTAGCAGCAACGTT | 59.756 | 50.000 | 0.00 | 0.00 | 0.00 | 3.99 |
2914 | 2959 | 0.530744 | AGCAGCAACGTTATCGGAGA | 59.469 | 50.000 | 0.00 | 0.00 | 45.75 | 3.71 |
2915 | 2960 | 0.924090 | GCAGCAACGTTATCGGAGAG | 59.076 | 55.000 | 0.00 | 0.00 | 43.63 | 3.20 |
2957 | 3002 | 2.614829 | ACTGCGACAGGTACAAGTTT | 57.385 | 45.000 | 10.80 | 0.00 | 35.51 | 2.66 |
3039 | 3084 | 0.175760 | GTGGCAATAGGTCGAGCTCA | 59.824 | 55.000 | 22.33 | 9.71 | 0.00 | 4.26 |
3113 | 3158 | 3.489568 | GGTTGTAAAAAGGGTGTGAACCG | 60.490 | 47.826 | 0.00 | 0.00 | 0.00 | 4.44 |
3115 | 3160 | 1.677052 | GTAAAAAGGGTGTGAACCGCA | 59.323 | 47.619 | 0.00 | 0.00 | 0.00 | 5.69 |
3348 | 3397 | 2.113860 | TGGGAACTAGAACATGCAGC | 57.886 | 50.000 | 0.00 | 0.00 | 0.00 | 5.25 |
3425 | 4484 | 6.267471 | ACTTGCAAAAGTCCATCCAGATTTTA | 59.733 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
3426 | 4485 | 6.662865 | TGCAAAAGTCCATCCAGATTTTAA | 57.337 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
3609 | 4801 | 8.600668 | ACACACATATGCTCTCCAGATATATTT | 58.399 | 33.333 | 1.58 | 0.00 | 0.00 | 1.40 |
3912 | 5104 | 3.761657 | TGCATGCAAAGATTTCGATGAC | 58.238 | 40.909 | 20.30 | 0.00 | 0.00 | 3.06 |
3928 | 5120 | 0.537143 | TGACCCAATGACACACAGGC | 60.537 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3935 | 5127 | 3.986006 | GACACACAGGCGGTCCGA | 61.986 | 66.667 | 17.49 | 0.00 | 37.47 | 4.55 |
3951 | 5143 | 3.621715 | GGTCCGATTGACAATCTGTTACC | 59.378 | 47.826 | 22.54 | 18.77 | 46.38 | 2.85 |
3960 | 5152 | 4.937620 | TGACAATCTGTTACCTCTGCATTC | 59.062 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
3963 | 5155 | 5.189736 | ACAATCTGTTACCTCTGCATTCCTA | 59.810 | 40.000 | 0.00 | 0.00 | 0.00 | 2.94 |
3987 | 5179 | 0.586319 | TGCGAAGGCTTGAACTTTCG | 59.414 | 50.000 | 3.46 | 0.42 | 40.82 | 3.46 |
3989 | 5181 | 0.110192 | CGAAGGCTTGAACTTTCGGC | 60.110 | 55.000 | 3.46 | 0.00 | 0.00 | 5.54 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 2.431942 | CCGACCAGACGAAACCGG | 60.432 | 66.667 | 0.00 | 0.00 | 35.09 | 5.28 |
85 | 86 | 0.320374 | TCTACACGCAACCCCAAGAG | 59.680 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
128 | 129 | 4.296310 | GAGCATCACTATGGCACTCCAAG | 61.296 | 52.174 | 0.00 | 0.00 | 39.95 | 3.61 |
129 | 130 | 2.420547 | GAGCATCACTATGGCACTCCAA | 60.421 | 50.000 | 0.00 | 0.00 | 39.95 | 3.53 |
130 | 131 | 1.139654 | GAGCATCACTATGGCACTCCA | 59.860 | 52.381 | 0.00 | 0.00 | 40.57 | 3.86 |
131 | 132 | 1.139654 | TGAGCATCACTATGGCACTCC | 59.860 | 52.381 | 0.00 | 0.00 | 42.56 | 3.85 |
132 | 133 | 2.102084 | TCTGAGCATCACTATGGCACTC | 59.898 | 50.000 | 0.00 | 0.00 | 42.56 | 3.51 |
133 | 134 | 2.102757 | CTCTGAGCATCACTATGGCACT | 59.897 | 50.000 | 0.00 | 0.00 | 42.56 | 4.40 |
141 | 143 | 1.202330 | CTTCCCCTCTGAGCATCACT | 58.798 | 55.000 | 0.00 | 0.00 | 42.56 | 3.41 |
148 | 150 | 0.911525 | TGCTTCCCTTCCCCTCTGAG | 60.912 | 60.000 | 0.00 | 0.00 | 0.00 | 3.35 |
163 | 165 | 1.401761 | TGCATCAACACAAGGTGCTT | 58.598 | 45.000 | 0.00 | 0.00 | 36.98 | 3.91 |
217 | 226 | 1.954382 | CATTCTGATCAGGGCACATGG | 59.046 | 52.381 | 22.42 | 0.00 | 0.00 | 3.66 |
262 | 271 | 5.751990 | GCTCAAATCTATTGGGATGCAAAAG | 59.248 | 40.000 | 0.00 | 0.00 | 0.00 | 2.27 |
341 | 357 | 2.159043 | TGCTATGCTCGGGAAAGAAGAG | 60.159 | 50.000 | 0.00 | 0.00 | 35.28 | 2.85 |
351 | 367 | 5.237815 | TCCTAAATAACATGCTATGCTCGG | 58.762 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
556 | 585 | 7.224297 | TGTCTGAAAAATACTGCCTAACTTCT | 58.776 | 34.615 | 0.00 | 0.00 | 0.00 | 2.85 |
557 | 586 | 7.435068 | TGTCTGAAAAATACTGCCTAACTTC | 57.565 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
667 | 697 | 5.837437 | AGTTAACTGATGGAGCTCGAATAG | 58.163 | 41.667 | 7.48 | 9.10 | 0.00 | 1.73 |
668 | 698 | 5.854010 | AGTTAACTGATGGAGCTCGAATA | 57.146 | 39.130 | 7.48 | 0.00 | 0.00 | 1.75 |
697 | 728 | 6.018994 | CGTACCTAACAAGTAATCCAATCAGC | 60.019 | 42.308 | 0.00 | 0.00 | 0.00 | 4.26 |
744 | 775 | 4.754618 | TGTTCACATACCTAACTTGCACTG | 59.245 | 41.667 | 0.00 | 0.00 | 0.00 | 3.66 |
745 | 776 | 4.968259 | TGTTCACATACCTAACTTGCACT | 58.032 | 39.130 | 0.00 | 0.00 | 0.00 | 4.40 |
746 | 777 | 4.154195 | CCTGTTCACATACCTAACTTGCAC | 59.846 | 45.833 | 0.00 | 0.00 | 0.00 | 4.57 |
747 | 778 | 4.323417 | CCTGTTCACATACCTAACTTGCA | 58.677 | 43.478 | 0.00 | 0.00 | 0.00 | 4.08 |
748 | 779 | 3.689649 | CCCTGTTCACATACCTAACTTGC | 59.310 | 47.826 | 0.00 | 0.00 | 0.00 | 4.01 |
811 | 842 | 6.886459 | ACTTGTTAACAGGAATACATGATGCT | 59.114 | 34.615 | 23.06 | 0.00 | 0.00 | 3.79 |
817 | 848 | 7.852263 | AGCTCTACTTGTTAACAGGAATACAT | 58.148 | 34.615 | 23.06 | 3.40 | 0.00 | 2.29 |
870 | 901 | 4.026744 | AGAAGACAAGTATCAGCAGCCTA | 58.973 | 43.478 | 0.00 | 0.00 | 0.00 | 3.93 |
882 | 913 | 4.202357 | TGTGATGCCTACAAGAAGACAAGT | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
891 | 926 | 4.082625 | TGCAATTTCTGTGATGCCTACAAG | 60.083 | 41.667 | 0.00 | 0.00 | 38.00 | 3.16 |
915 | 950 | 4.658063 | ACGTCAGATTAAATCCAACCCAA | 58.342 | 39.130 | 0.00 | 0.00 | 0.00 | 4.12 |
935 | 972 | 2.739379 | GAGGCCTTCTTTCTTCAGAACG | 59.261 | 50.000 | 6.77 | 0.00 | 33.13 | 3.95 |
1026 | 1063 | 8.534333 | AAATATTATCTGCGTATGTCGTTGAT | 57.466 | 30.769 | 0.00 | 0.00 | 42.13 | 2.57 |
1065 | 1102 | 3.283684 | TTTGAGTTGGGTGCGCCG | 61.284 | 61.111 | 10.86 | 0.00 | 34.97 | 6.46 |
1197 | 1234 | 6.121776 | TGCTGGTTATAAAAGGAGTTCTGA | 57.878 | 37.500 | 0.00 | 0.00 | 0.00 | 3.27 |
1212 | 1249 | 3.813166 | GTGTTAGTGAAGCTTGCTGGTTA | 59.187 | 43.478 | 2.10 | 0.00 | 36.40 | 2.85 |
1300 | 1337 | 8.774546 | AGTCCAGAACTCTGATTATCTGATAA | 57.225 | 34.615 | 12.17 | 12.17 | 46.59 | 1.75 |
1425 | 1462 | 3.021695 | CCATTCATCACTGATGCAACCT | 58.978 | 45.455 | 13.46 | 0.00 | 39.63 | 3.50 |
1578 | 1615 | 4.025647 | GCTTCATCTACGTTGTATTCAGCC | 60.026 | 45.833 | 0.00 | 0.00 | 0.00 | 4.85 |
1587 | 1624 | 1.394917 | GCCTGTGCTTCATCTACGTTG | 59.605 | 52.381 | 0.00 | 0.00 | 33.53 | 4.10 |
1767 | 1804 | 4.464951 | TCAAAGAGGATTTGCATTGCTGAT | 59.535 | 37.500 | 10.49 | 3.72 | 0.00 | 2.90 |
1925 | 1962 | 7.062605 | GTGGTTTGTTTGCATCATCTTTCATAG | 59.937 | 37.037 | 0.00 | 0.00 | 0.00 | 2.23 |
1992 | 2029 | 1.893919 | GACCTCCCACAGTCCTCTGC | 61.894 | 65.000 | 0.00 | 0.00 | 44.77 | 4.26 |
2004 | 2041 | 1.065126 | CCAATGACCTTCAGACCTCCC | 60.065 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
2032 | 2069 | 1.003355 | CCTCCGCAAGCTTCTCCAA | 60.003 | 57.895 | 0.00 | 0.00 | 0.00 | 3.53 |
2055 | 2092 | 4.949856 | GCCCTGAACTCAAAAGATATTCCA | 59.050 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
2211 | 2248 | 0.824109 | TCACCATACGAAGGAGCTGG | 59.176 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2313 | 2350 | 5.534278 | TGCCGCAATAGAATTGGATAATGAA | 59.466 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2386 | 2423 | 7.625469 | AGACTTAAATTTAGGAACAGAGGGAG | 58.375 | 38.462 | 13.73 | 0.00 | 0.00 | 4.30 |
2387 | 2424 | 7.569599 | AGACTTAAATTTAGGAACAGAGGGA | 57.430 | 36.000 | 13.73 | 0.00 | 0.00 | 4.20 |
2389 | 2426 | 9.067986 | ACAAAGACTTAAATTTAGGAACAGAGG | 57.932 | 33.333 | 13.73 | 1.06 | 0.00 | 3.69 |
2396 | 2433 | 9.802039 | ACCACATACAAAGACTTAAATTTAGGA | 57.198 | 29.630 | 13.73 | 0.00 | 0.00 | 2.94 |
2399 | 2436 | 9.575868 | TGGACCACATACAAAGACTTAAATTTA | 57.424 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2400 | 2437 | 8.472007 | TGGACCACATACAAAGACTTAAATTT | 57.528 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
2401 | 2438 | 8.650143 | ATGGACCACATACAAAGACTTAAATT | 57.350 | 30.769 | 0.00 | 0.00 | 38.26 | 1.82 |
2402 | 2439 | 9.396022 | CTATGGACCACATACAAAGACTTAAAT | 57.604 | 33.333 | 0.00 | 0.00 | 41.03 | 1.40 |
2403 | 2440 | 8.380099 | ACTATGGACCACATACAAAGACTTAAA | 58.620 | 33.333 | 0.00 | 0.00 | 41.03 | 1.52 |
2404 | 2441 | 7.822334 | CACTATGGACCACATACAAAGACTTAA | 59.178 | 37.037 | 0.00 | 0.00 | 41.03 | 1.85 |
2405 | 2442 | 7.327975 | CACTATGGACCACATACAAAGACTTA | 58.672 | 38.462 | 0.00 | 0.00 | 41.03 | 2.24 |
2406 | 2443 | 6.173339 | CACTATGGACCACATACAAAGACTT | 58.827 | 40.000 | 0.00 | 0.00 | 41.03 | 3.01 |
2407 | 2444 | 5.338381 | CCACTATGGACCACATACAAAGACT | 60.338 | 44.000 | 0.00 | 0.00 | 40.96 | 3.24 |
2408 | 2445 | 4.876107 | CCACTATGGACCACATACAAAGAC | 59.124 | 45.833 | 0.00 | 0.00 | 40.96 | 3.01 |
2409 | 2446 | 4.780554 | TCCACTATGGACCACATACAAAGA | 59.219 | 41.667 | 0.00 | 0.00 | 42.67 | 2.52 |
2410 | 2447 | 5.097742 | TCCACTATGGACCACATACAAAG | 57.902 | 43.478 | 0.00 | 0.00 | 42.67 | 2.77 |
2422 | 2459 | 6.897966 | AGTCTTTGTAGAGATTCCACTATGGA | 59.102 | 38.462 | 0.00 | 0.00 | 46.61 | 3.41 |
2423 | 2460 | 7.118496 | AGTCTTTGTAGAGATTCCACTATGG | 57.882 | 40.000 | 0.00 | 0.00 | 39.43 | 2.74 |
2439 | 2476 | 9.907229 | CCTCCTTTCCTAAATATAAGTCTTTGT | 57.093 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2440 | 2477 | 9.343539 | CCCTCCTTTCCTAAATATAAGTCTTTG | 57.656 | 37.037 | 0.00 | 0.00 | 0.00 | 2.77 |
2441 | 2478 | 9.292751 | TCCCTCCTTTCCTAAATATAAGTCTTT | 57.707 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
2442 | 2479 | 8.871570 | TCCCTCCTTTCCTAAATATAAGTCTT | 57.128 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
2443 | 2480 | 8.074991 | ACTCCCTCCTTTCCTAAATATAAGTCT | 58.925 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
2444 | 2481 | 8.265108 | ACTCCCTCCTTTCCTAAATATAAGTC | 57.735 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
2445 | 2482 | 9.382307 | CTACTCCCTCCTTTCCTAAATATAAGT | 57.618 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
2446 | 2483 | 9.603189 | TCTACTCCCTCCTTTCCTAAATATAAG | 57.397 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
2447 | 2484 | 9.377238 | GTCTACTCCCTCCTTTCCTAAATATAA | 57.623 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
2448 | 2485 | 8.517047 | TGTCTACTCCCTCCTTTCCTAAATATA | 58.483 | 37.037 | 0.00 | 0.00 | 0.00 | 0.86 |
2449 | 2486 | 7.290481 | GTGTCTACTCCCTCCTTTCCTAAATAT | 59.710 | 40.741 | 0.00 | 0.00 | 0.00 | 1.28 |
2450 | 2487 | 6.610425 | GTGTCTACTCCCTCCTTTCCTAAATA | 59.390 | 42.308 | 0.00 | 0.00 | 0.00 | 1.40 |
2451 | 2488 | 5.425862 | GTGTCTACTCCCTCCTTTCCTAAAT | 59.574 | 44.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2452 | 2489 | 4.776308 | GTGTCTACTCCCTCCTTTCCTAAA | 59.224 | 45.833 | 0.00 | 0.00 | 0.00 | 1.85 |
2453 | 2490 | 4.045590 | AGTGTCTACTCCCTCCTTTCCTAA | 59.954 | 45.833 | 0.00 | 0.00 | 28.79 | 2.69 |
2454 | 2491 | 3.596956 | AGTGTCTACTCCCTCCTTTCCTA | 59.403 | 47.826 | 0.00 | 0.00 | 28.79 | 2.94 |
2455 | 2492 | 2.384029 | AGTGTCTACTCCCTCCTTTCCT | 59.616 | 50.000 | 0.00 | 0.00 | 28.79 | 3.36 |
2456 | 2493 | 2.822697 | AGTGTCTACTCCCTCCTTTCC | 58.177 | 52.381 | 0.00 | 0.00 | 28.79 | 3.13 |
2457 | 2494 | 7.657023 | TTATTAGTGTCTACTCCCTCCTTTC | 57.343 | 40.000 | 0.00 | 0.00 | 38.36 | 2.62 |
2458 | 2495 | 7.624077 | ACATTATTAGTGTCTACTCCCTCCTTT | 59.376 | 37.037 | 0.00 | 0.00 | 38.36 | 3.11 |
2459 | 2496 | 7.133483 | ACATTATTAGTGTCTACTCCCTCCTT | 58.867 | 38.462 | 0.00 | 0.00 | 38.36 | 3.36 |
2460 | 2497 | 6.684538 | ACATTATTAGTGTCTACTCCCTCCT | 58.315 | 40.000 | 0.00 | 0.00 | 38.36 | 3.69 |
2461 | 2498 | 6.980416 | ACATTATTAGTGTCTACTCCCTCC | 57.020 | 41.667 | 0.00 | 0.00 | 38.36 | 4.30 |
2462 | 2499 | 7.288158 | AGGAACATTATTAGTGTCTACTCCCTC | 59.712 | 40.741 | 4.87 | 0.00 | 38.36 | 4.30 |
2463 | 2500 | 7.133483 | AGGAACATTATTAGTGTCTACTCCCT | 58.867 | 38.462 | 4.87 | 0.00 | 38.36 | 4.20 |
2464 | 2501 | 7.362802 | AGGAACATTATTAGTGTCTACTCCC | 57.637 | 40.000 | 4.87 | 0.00 | 38.36 | 4.30 |
2465 | 2502 | 9.099454 | CAAAGGAACATTATTAGTGTCTACTCC | 57.901 | 37.037 | 0.00 | 0.00 | 38.36 | 3.85 |
2466 | 2503 | 9.654663 | ACAAAGGAACATTATTAGTGTCTACTC | 57.345 | 33.333 | 0.00 | 0.00 | 38.36 | 2.59 |
2511 | 2548 | 2.306847 | GGCAGTGGGAAGAAAAACTCA | 58.693 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
2512 | 2549 | 1.266989 | CGGCAGTGGGAAGAAAAACTC | 59.733 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
2513 | 2550 | 1.133915 | TCGGCAGTGGGAAGAAAAACT | 60.134 | 47.619 | 0.00 | 0.00 | 0.00 | 2.66 |
2518 | 2557 | 2.347490 | GCTCGGCAGTGGGAAGAA | 59.653 | 61.111 | 0.00 | 0.00 | 0.00 | 2.52 |
2606 | 2645 | 1.202639 | AGTGTTGCGTCCAGTGAATCA | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
2717 | 2756 | 4.160439 | CAGCACTAGAATTACCTCTCCACA | 59.840 | 45.833 | 0.00 | 0.00 | 0.00 | 4.17 |
2855 | 2900 | 0.529337 | CAGCCATCGTCATTCTCGCT | 60.529 | 55.000 | 0.00 | 0.00 | 0.00 | 4.93 |
2906 | 2951 | 3.375610 | GCAGCGATCTTATCTCTCCGATA | 59.624 | 47.826 | 0.00 | 0.00 | 33.48 | 2.92 |
2914 | 2959 | 2.437200 | GCTCAGCAGCGATCTTATCT | 57.563 | 50.000 | 0.00 | 0.00 | 35.39 | 1.98 |
2957 | 3002 | 2.042762 | CCCCCATGGTCCTCCTCA | 59.957 | 66.667 | 11.73 | 0.00 | 34.23 | 3.86 |
3039 | 3084 | 2.162681 | GCTAATGCAACCCAAGTCAGT | 58.837 | 47.619 | 0.00 | 0.00 | 39.41 | 3.41 |
3113 | 3158 | 0.322975 | TCAGCCAAGAACTCCTCTGC | 59.677 | 55.000 | 0.00 | 0.00 | 33.37 | 4.26 |
3115 | 3160 | 2.831565 | AGATCAGCCAAGAACTCCTCT | 58.168 | 47.619 | 0.00 | 0.00 | 35.13 | 3.69 |
3348 | 3397 | 6.959639 | ACCTGTGGCCAAACTTATATATTG | 57.040 | 37.500 | 7.24 | 0.00 | 0.00 | 1.90 |
3425 | 4484 | 9.561069 | CTGCCAACTACTCTATTGGTTATAATT | 57.439 | 33.333 | 5.01 | 0.00 | 46.07 | 1.40 |
3426 | 4485 | 7.661847 | GCTGCCAACTACTCTATTGGTTATAAT | 59.338 | 37.037 | 5.01 | 0.00 | 46.07 | 1.28 |
3609 | 4801 | 7.282224 | AGTGTTGTCAGCTAAATTACTTCAACA | 59.718 | 33.333 | 0.00 | 0.00 | 36.60 | 3.33 |
3656 | 4848 | 4.819105 | AGACAAATATGGTCCGTGAAGA | 57.181 | 40.909 | 0.00 | 0.00 | 35.89 | 2.87 |
3912 | 5104 | 2.334946 | CCGCCTGTGTGTCATTGGG | 61.335 | 63.158 | 0.00 | 0.00 | 0.00 | 4.12 |
3928 | 5120 | 2.010145 | ACAGATTGTCAATCGGACCG | 57.990 | 50.000 | 26.23 | 7.84 | 46.38 | 4.79 |
3935 | 5127 | 4.910195 | TGCAGAGGTAACAGATTGTCAAT | 58.090 | 39.130 | 0.00 | 0.00 | 41.41 | 2.57 |
3960 | 5152 | 0.734889 | CAAGCCTTCGCATGGTTAGG | 59.265 | 55.000 | 0.00 | 0.00 | 37.52 | 2.69 |
3963 | 5155 | 0.598065 | GTTCAAGCCTTCGCATGGTT | 59.402 | 50.000 | 0.00 | 0.00 | 34.44 | 3.67 |
3987 | 5179 | 4.583871 | AGCCAATATCTATAAGCACTGCC | 58.416 | 43.478 | 0.00 | 0.00 | 0.00 | 4.85 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.