Multiple sequence alignment - TraesCS3B01G441400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G441400 chr3B 100.000 4168 0 0 1 4168 680747907 680752074 0.000000e+00 7697
1 TraesCS3B01G441400 chr3B 96.982 729 20 2 2 728 772388064 772388792 0.000000e+00 1223
2 TraesCS3B01G441400 chr3B 98.851 87 0 1 2433 2518 680750253 680750339 2.010000e-33 154
3 TraesCS3B01G441400 chr3B 98.851 87 0 1 2347 2433 680750339 680750424 2.010000e-33 154
4 TraesCS3B01G441400 chr4B 96.164 730 23 5 2 727 55034666 55035394 0.000000e+00 1188
5 TraesCS3B01G441400 chr4B 89.258 391 16 4 3787 4168 12008194 12007821 2.270000e-127 466
6 TraesCS3B01G441400 chr4B 79.216 587 81 21 2621 3192 38026638 38026078 1.830000e-98 370
7 TraesCS3B01G441400 chr4B 81.798 456 53 16 2001 2433 38027238 38026790 5.130000e-94 355
8 TraesCS3B01G441400 chr4B 88.679 159 15 3 572 728 541453225 541453068 1.530000e-44 191
9 TraesCS3B01G441400 chr4B 82.873 181 26 3 940 1117 38028425 38028247 1.550000e-34 158
10 TraesCS3B01G441400 chr4B 92.708 96 4 2 2195 2287 9948082 9947987 7.270000e-28 135
11 TraesCS3B01G441400 chr3A 95.934 664 15 5 2293 2946 651643091 651642430 0.000000e+00 1066
12 TraesCS3B01G441400 chr3A 89.348 629 58 7 2 625 57106576 57105952 0.000000e+00 782
13 TraesCS3B01G441400 chr3A 88.394 629 65 7 2 625 19564784 19565409 0.000000e+00 750
14 TraesCS3B01G441400 chr3A 96.071 280 11 0 2947 3226 651640693 651640414 1.370000e-124 457
15 TraesCS3B01G441400 chr3A 97.235 217 5 1 3228 3443 651635581 651635365 2.370000e-97 366
16 TraesCS3B01G441400 chr3A 93.103 203 5 4 1491 1693 651643127 651643320 5.270000e-74 289
17 TraesCS3B01G441400 chr3A 94.536 183 4 2 3444 3620 651635013 651634831 1.140000e-70 278
18 TraesCS3B01G441400 chr3A 97.674 86 0 2 2348 2433 651642950 651642867 3.360000e-31 147
19 TraesCS3B01G441400 chr3A 97.674 86 1 1 2433 2517 651643037 651642952 3.360000e-31 147
20 TraesCS3B01G441400 chr7B 97.268 549 11 2 3620 4168 381902155 381902699 0.000000e+00 928
21 TraesCS3B01G441400 chr7B 82.492 297 40 5 434 728 674585038 674585324 2.490000e-62 250
22 TraesCS3B01G441400 chr5D 88.283 734 72 11 2 730 489005197 489004473 0.000000e+00 867
23 TraesCS3B01G441400 chr5D 89.078 705 67 9 2 701 489157050 489156351 0.000000e+00 867
24 TraesCS3B01G441400 chr5D 93.478 184 5 3 3444 3620 502879239 502879056 2.470000e-67 267
25 TraesCS3B01G441400 chr2A 90.183 601 54 4 2 600 672430096 672429499 0.000000e+00 778
26 TraesCS3B01G441400 chr2A 89.500 600 59 2 2 600 744438003 744438599 0.000000e+00 756
27 TraesCS3B01G441400 chr3D 91.771 559 37 2 2677 3226 516460027 516459469 0.000000e+00 769
28 TraesCS3B01G441400 chr3D 96.774 217 6 1 3228 3443 516421836 516422052 1.100000e-95 361
29 TraesCS3B01G441400 chr3D 92.896 183 7 2 3444 3620 516422397 516422579 1.150000e-65 261
30 TraesCS3B01G441400 chr2B 89.867 602 56 5 2 600 24221306 24221905 0.000000e+00 769
31 TraesCS3B01G441400 chr4D 78.112 699 88 32 2532 3192 25694164 25693493 2.350000e-102 383
32 TraesCS3B01G441400 chr4D 81.938 454 53 17 2001 2433 25694646 25694201 1.420000e-94 357
33 TraesCS3B01G441400 chr4D 81.182 457 63 12 1995 2433 5684753 5685204 3.080000e-91 346
34 TraesCS3B01G441400 chr4D 73.876 356 55 21 1629 1982 5684388 5684707 1.580000e-19 108
35 TraesCS3B01G441400 chr4A 78.112 699 88 32 2532 3192 692384298 692383627 2.350000e-102 383
36 TraesCS3B01G441400 chr4A 82.159 454 52 17 2001 2433 692384780 692384335 3.060000e-96 363
37 TraesCS3B01G441400 chr4A 88.321 137 15 1 982 1117 692385921 692385785 3.330000e-36 163
38 TraesCS3B01G441400 chr7A 85.385 390 32 7 3620 3988 479046996 479046611 8.460000e-102 381
39 TraesCS3B01G441400 chr7A 78.031 701 85 35 2532 3192 32631361 32630690 1.090000e-100 377
40 TraesCS3B01G441400 chr7A 84.872 390 34 5 3620 3988 479012298 479011913 1.830000e-98 370
41 TraesCS3B01G441400 chr7A 82.968 411 44 13 2042 2433 32631801 32631398 8.580000e-92 348
42 TraesCS3B01G441400 chr7A 88.321 137 15 1 982 1117 32632987 32632851 3.330000e-36 163
43 TraesCS3B01G441400 chr7D 77.682 699 91 32 2532 3192 32608052 32607381 2.370000e-97 366
44 TraesCS3B01G441400 chr7D 83.498 406 45 13 2042 2433 32608486 32608089 3.960000e-95 359
45 TraesCS3B01G441400 chr7D 86.861 137 17 1 982 1117 32609696 32609560 7.220000e-33 152
46 TraesCS3B01G441400 chr6B 77.846 650 86 28 2532 3146 626214720 626215346 2.380000e-92 350
47 TraesCS3B01G441400 chr6B 81.416 452 58 14 2001 2433 626214239 626214683 3.080000e-91 346
48 TraesCS3B01G441400 chr6B 81.111 180 25 7 941 1117 626212036 626212209 7.270000e-28 135
49 TraesCS3B01G441400 chr5B 94.595 185 2 3 3444 3620 631796404 631796220 3.170000e-71 279
50 TraesCS3B01G441400 chr5A 92.935 184 6 3 3444 3620 631468643 631468460 1.150000e-65 261
51 TraesCS3B01G441400 chr5A 95.062 81 3 1 3444 3523 631469221 631469141 4.370000e-25 126
52 TraesCS3B01G441400 chr5A 94.595 74 4 0 3370 3443 669809169 669809242 9.470000e-22 115
53 TraesCS3B01G441400 chr1D 92.248 129 8 1 3228 3354 348841335 348841463 9.200000e-42 182
54 TraesCS3B01G441400 chr1D 97.938 97 1 1 3348 3443 348898194 348898290 2.580000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G441400 chr3B 680747907 680752074 4167 False 2668.333333 7697 99.234000 1 4168 3 chr3B.!!$F2 4167
1 TraesCS3B01G441400 chr3B 772388064 772388792 728 False 1223.000000 1223 96.982000 2 728 1 chr3B.!!$F1 726
2 TraesCS3B01G441400 chr4B 55034666 55035394 728 False 1188.000000 1188 96.164000 2 727 1 chr4B.!!$F1 725
3 TraesCS3B01G441400 chr4B 38026078 38028425 2347 True 294.333333 370 81.295667 940 3192 3 chr4B.!!$R4 2252
4 TraesCS3B01G441400 chr3A 57105952 57106576 624 True 782.000000 782 89.348000 2 625 1 chr3A.!!$R1 623
5 TraesCS3B01G441400 chr3A 19564784 19565409 625 False 750.000000 750 88.394000 2 625 1 chr3A.!!$F1 623
6 TraesCS3B01G441400 chr3A 651640414 651643091 2677 True 454.250000 1066 96.838250 2293 3226 4 chr3A.!!$R3 933
7 TraesCS3B01G441400 chr3A 651634831 651635581 750 True 322.000000 366 95.885500 3228 3620 2 chr3A.!!$R2 392
8 TraesCS3B01G441400 chr7B 381902155 381902699 544 False 928.000000 928 97.268000 3620 4168 1 chr7B.!!$F1 548
9 TraesCS3B01G441400 chr5D 489004473 489005197 724 True 867.000000 867 88.283000 2 730 1 chr5D.!!$R1 728
10 TraesCS3B01G441400 chr5D 489156351 489157050 699 True 867.000000 867 89.078000 2 701 1 chr5D.!!$R2 699
11 TraesCS3B01G441400 chr2A 672429499 672430096 597 True 778.000000 778 90.183000 2 600 1 chr2A.!!$R1 598
12 TraesCS3B01G441400 chr2A 744438003 744438599 596 False 756.000000 756 89.500000 2 600 1 chr2A.!!$F1 598
13 TraesCS3B01G441400 chr3D 516459469 516460027 558 True 769.000000 769 91.771000 2677 3226 1 chr3D.!!$R1 549
14 TraesCS3B01G441400 chr3D 516421836 516422579 743 False 311.000000 361 94.835000 3228 3620 2 chr3D.!!$F1 392
15 TraesCS3B01G441400 chr2B 24221306 24221905 599 False 769.000000 769 89.867000 2 600 1 chr2B.!!$F1 598
16 TraesCS3B01G441400 chr4D 25693493 25694646 1153 True 370.000000 383 80.025000 2001 3192 2 chr4D.!!$R1 1191
17 TraesCS3B01G441400 chr4D 5684388 5685204 816 False 227.000000 346 77.529000 1629 2433 2 chr4D.!!$F1 804
18 TraesCS3B01G441400 chr4A 692383627 692385921 2294 True 303.000000 383 82.864000 982 3192 3 chr4A.!!$R1 2210
19 TraesCS3B01G441400 chr7A 32630690 32632987 2297 True 296.000000 377 83.106667 982 3192 3 chr7A.!!$R3 2210
20 TraesCS3B01G441400 chr7D 32607381 32609696 2315 True 292.333333 366 82.680333 982 3192 3 chr7D.!!$R1 2210
21 TraesCS3B01G441400 chr6B 626212036 626215346 3310 False 277.000000 350 80.124333 941 3146 3 chr6B.!!$F1 2205

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
831 844 0.099968 CATGTTGCAATCCGGCTGAG 59.900 55.0 0.59 0.0 34.04 3.35 F
1292 2436 0.036306 CCAGCCTACCTCCGTTGTTT 59.964 55.0 0.00 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1833 3118 0.757188 AGCGTCAGTCCTAGGATGGG 60.757 60.0 16.27 7.83 38.63 4.00 R
3173 6339 0.736325 CGAAGGGGTAGCGACACAAG 60.736 60.0 0.44 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
329 337 1.040339 TGCCCCGGTAATTTCCATGC 61.040 55.000 0.00 1.41 0.00 4.06
484 494 9.982291 GCGAATCTTTTATGTGAATACAGTTTA 57.018 29.630 0.00 0.00 40.79 2.01
653 666 1.663695 GCACGGGATTTGCTAGCTAA 58.336 50.000 17.23 15.49 37.00 3.09
730 743 3.724295 GACATTAGTCGTGTCCTTTGC 57.276 47.619 0.00 0.00 39.99 3.68
731 744 2.066262 ACATTAGTCGTGTCCTTTGCG 58.934 47.619 0.00 0.00 0.00 4.85
732 745 2.288579 ACATTAGTCGTGTCCTTTGCGA 60.289 45.455 0.00 0.00 0.00 5.10
733 746 2.512485 TTAGTCGTGTCCTTTGCGAA 57.488 45.000 0.00 0.00 36.37 4.70
734 747 2.512485 TAGTCGTGTCCTTTGCGAAA 57.488 45.000 0.00 0.00 36.37 3.46
735 748 1.658994 AGTCGTGTCCTTTGCGAAAA 58.341 45.000 0.00 0.00 36.37 2.29
736 749 1.597663 AGTCGTGTCCTTTGCGAAAAG 59.402 47.619 9.09 9.09 36.37 2.27
746 759 4.580835 GCGAAAAGCTCTCCGTCT 57.419 55.556 0.00 0.00 44.04 4.18
747 760 2.828933 GCGAAAAGCTCTCCGTCTT 58.171 52.632 0.00 0.00 44.04 3.01
748 761 1.149148 GCGAAAAGCTCTCCGTCTTT 58.851 50.000 0.00 0.00 44.04 2.52
749 762 1.531578 GCGAAAAGCTCTCCGTCTTTT 59.468 47.619 0.00 0.00 43.00 2.27
750 763 2.031944 GCGAAAAGCTCTCCGTCTTTTT 60.032 45.455 0.00 0.00 41.12 1.94
784 797 4.637873 GCGAATAGCTCTCCGTCC 57.362 61.111 0.00 0.00 44.04 4.79
785 798 2.034607 GCGAATAGCTCTCCGTCCT 58.965 57.895 0.00 0.00 44.04 3.85
786 799 0.386113 GCGAATAGCTCTCCGTCCTT 59.614 55.000 0.00 0.00 44.04 3.36
787 800 1.202428 GCGAATAGCTCTCCGTCCTTT 60.202 52.381 0.00 0.00 44.04 3.11
788 801 2.034305 GCGAATAGCTCTCCGTCCTTTA 59.966 50.000 0.00 0.00 44.04 1.85
789 802 3.630101 CGAATAGCTCTCCGTCCTTTAC 58.370 50.000 0.00 0.00 0.00 2.01
790 803 3.066342 CGAATAGCTCTCCGTCCTTTACA 59.934 47.826 0.00 0.00 0.00 2.41
791 804 4.439700 CGAATAGCTCTCCGTCCTTTACAA 60.440 45.833 0.00 0.00 0.00 2.41
792 805 2.745515 AGCTCTCCGTCCTTTACAAC 57.254 50.000 0.00 0.00 0.00 3.32
793 806 2.249139 AGCTCTCCGTCCTTTACAACT 58.751 47.619 0.00 0.00 0.00 3.16
794 807 2.028930 AGCTCTCCGTCCTTTACAACTG 60.029 50.000 0.00 0.00 0.00 3.16
795 808 2.338500 CTCTCCGTCCTTTACAACTGC 58.662 52.381 0.00 0.00 0.00 4.40
796 809 1.689813 TCTCCGTCCTTTACAACTGCA 59.310 47.619 0.00 0.00 0.00 4.41
797 810 2.103432 TCTCCGTCCTTTACAACTGCAA 59.897 45.455 0.00 0.00 0.00 4.08
798 811 2.215196 TCCGTCCTTTACAACTGCAAC 58.785 47.619 0.00 0.00 0.00 4.17
799 812 1.944024 CCGTCCTTTACAACTGCAACA 59.056 47.619 0.00 0.00 0.00 3.33
800 813 2.286772 CCGTCCTTTACAACTGCAACAC 60.287 50.000 0.00 0.00 0.00 3.32
801 814 2.598907 CGTCCTTTACAACTGCAACACG 60.599 50.000 0.00 0.00 0.00 4.49
802 815 1.944024 TCCTTTACAACTGCAACACGG 59.056 47.619 0.00 0.00 0.00 4.94
803 816 1.599419 CCTTTACAACTGCAACACGGC 60.599 52.381 0.00 0.00 0.00 5.68
804 817 0.382515 TTTACAACTGCAACACGGCC 59.617 50.000 0.00 0.00 0.00 6.13
805 818 0.748367 TTACAACTGCAACACGGCCA 60.748 50.000 2.24 0.00 0.00 5.36
806 819 1.440938 TACAACTGCAACACGGCCAC 61.441 55.000 2.24 0.00 0.00 5.01
807 820 2.439338 AACTGCAACACGGCCACA 60.439 55.556 2.24 0.00 0.00 4.17
808 821 2.770589 AACTGCAACACGGCCACAC 61.771 57.895 2.24 0.00 0.00 3.82
809 822 4.312231 CTGCAACACGGCCACACG 62.312 66.667 2.24 0.00 40.31 4.49
828 841 2.887360 GCATGTTGCAATCCGGCT 59.113 55.556 0.59 0.00 44.26 5.52
829 842 1.517694 GCATGTTGCAATCCGGCTG 60.518 57.895 0.59 0.00 44.26 4.85
830 843 1.936436 GCATGTTGCAATCCGGCTGA 61.936 55.000 0.59 0.00 44.26 4.26
831 844 0.099968 CATGTTGCAATCCGGCTGAG 59.900 55.000 0.59 0.00 34.04 3.35
832 845 1.660560 ATGTTGCAATCCGGCTGAGC 61.661 55.000 0.59 0.00 34.04 4.26
833 846 2.042831 GTTGCAATCCGGCTGAGCT 61.043 57.895 0.59 0.00 34.04 4.09
834 847 1.746615 TTGCAATCCGGCTGAGCTC 60.747 57.895 6.82 6.82 34.04 4.09
835 848 2.188994 GCAATCCGGCTGAGCTCT 59.811 61.111 16.19 0.00 0.00 4.09
836 849 1.886777 GCAATCCGGCTGAGCTCTC 60.887 63.158 16.19 6.64 0.00 3.20
837 850 1.591059 CAATCCGGCTGAGCTCTCG 60.591 63.158 16.19 15.18 0.00 4.04
838 851 2.055042 AATCCGGCTGAGCTCTCGT 61.055 57.895 16.19 0.00 0.00 4.18
839 852 0.752009 AATCCGGCTGAGCTCTCGTA 60.752 55.000 16.19 3.97 0.00 3.43
840 853 0.538516 ATCCGGCTGAGCTCTCGTAT 60.539 55.000 16.19 6.16 0.00 3.06
841 854 0.108019 TCCGGCTGAGCTCTCGTATA 59.892 55.000 16.19 2.24 0.00 1.47
842 855 0.519519 CCGGCTGAGCTCTCGTATAG 59.480 60.000 16.19 3.57 0.00 1.31
843 856 0.519519 CGGCTGAGCTCTCGTATAGG 59.480 60.000 16.19 0.00 0.00 2.57
844 857 1.878525 CGGCTGAGCTCTCGTATAGGA 60.879 57.143 16.19 0.00 0.00 2.94
845 858 2.231529 GGCTGAGCTCTCGTATAGGAA 58.768 52.381 16.19 0.00 0.00 3.36
846 859 2.030628 GGCTGAGCTCTCGTATAGGAAC 60.031 54.545 16.19 0.00 0.00 3.62
847 860 2.350007 GCTGAGCTCTCGTATAGGAACG 60.350 54.545 16.19 0.00 44.19 3.95
848 861 1.602851 TGAGCTCTCGTATAGGAACGC 59.397 52.381 16.19 7.25 42.56 4.84
849 862 0.587285 AGCTCTCGTATAGGAACGCG 59.413 55.000 3.53 3.53 42.56 6.01
850 863 0.997726 GCTCTCGTATAGGAACGCGC 60.998 60.000 5.73 0.00 42.56 6.86
851 864 0.721811 CTCTCGTATAGGAACGCGCG 60.722 60.000 30.96 30.96 42.56 6.86
852 865 1.010350 CTCGTATAGGAACGCGCGT 60.010 57.895 32.73 32.73 42.56 6.01
853 866 0.590732 CTCGTATAGGAACGCGCGTT 60.591 55.000 44.54 44.54 42.56 4.84
854 867 0.655208 TCGTATAGGAACGCGCGTTA 59.345 50.000 43.90 30.87 42.56 3.18
855 868 0.766530 CGTATAGGAACGCGCGTTAC 59.233 55.000 42.88 42.88 38.60 2.50
856 869 0.766530 GTATAGGAACGCGCGTTACG 59.233 55.000 42.31 14.86 43.37 3.18
887 900 2.970324 GGCTGACGGTGCGAACAA 60.970 61.111 0.00 0.00 0.00 2.83
888 901 2.539338 GGCTGACGGTGCGAACAAA 61.539 57.895 0.00 0.00 0.00 2.83
889 902 1.353804 GCTGACGGTGCGAACAAAA 59.646 52.632 0.00 0.00 0.00 2.44
890 903 0.248296 GCTGACGGTGCGAACAAAAA 60.248 50.000 0.00 0.00 0.00 1.94
909 922 4.842139 AAAATAGTTCGTTGAGCGCTAG 57.158 40.909 11.50 2.09 41.07 3.42
910 923 3.777465 AATAGTTCGTTGAGCGCTAGA 57.223 42.857 11.50 4.92 41.07 2.43
911 924 3.777465 ATAGTTCGTTGAGCGCTAGAA 57.223 42.857 11.50 11.44 41.07 2.10
912 925 2.656560 AGTTCGTTGAGCGCTAGAAT 57.343 45.000 11.50 2.33 41.07 2.40
913 926 2.531206 AGTTCGTTGAGCGCTAGAATC 58.469 47.619 11.50 0.00 41.07 2.52
914 927 1.588861 GTTCGTTGAGCGCTAGAATCC 59.411 52.381 11.50 0.00 41.07 3.01
915 928 0.102481 TCGTTGAGCGCTAGAATCCC 59.898 55.000 11.50 0.00 41.07 3.85
916 929 0.179111 CGTTGAGCGCTAGAATCCCA 60.179 55.000 11.50 0.00 0.00 4.37
917 930 1.539065 CGTTGAGCGCTAGAATCCCAT 60.539 52.381 11.50 0.00 0.00 4.00
918 931 2.139118 GTTGAGCGCTAGAATCCCATC 58.861 52.381 11.50 0.00 0.00 3.51
919 932 1.413118 TGAGCGCTAGAATCCCATCA 58.587 50.000 11.50 0.00 0.00 3.07
920 933 1.762370 TGAGCGCTAGAATCCCATCAA 59.238 47.619 11.50 0.00 0.00 2.57
921 934 2.170397 TGAGCGCTAGAATCCCATCAAA 59.830 45.455 11.50 0.00 0.00 2.69
922 935 3.181451 TGAGCGCTAGAATCCCATCAAAT 60.181 43.478 11.50 0.00 0.00 2.32
923 936 3.406764 AGCGCTAGAATCCCATCAAATC 58.593 45.455 8.99 0.00 0.00 2.17
924 937 2.158449 GCGCTAGAATCCCATCAAATCG 59.842 50.000 0.00 0.00 0.00 3.34
925 938 3.393800 CGCTAGAATCCCATCAAATCGT 58.606 45.455 0.00 0.00 0.00 3.73
926 939 3.430218 CGCTAGAATCCCATCAAATCGTC 59.570 47.826 0.00 0.00 0.00 4.20
927 940 3.430218 GCTAGAATCCCATCAAATCGTCG 59.570 47.826 0.00 0.00 0.00 5.12
928 941 2.838736 AGAATCCCATCAAATCGTCGG 58.161 47.619 0.00 0.00 0.00 4.79
929 942 1.264288 GAATCCCATCAAATCGTCGGC 59.736 52.381 0.00 0.00 0.00 5.54
930 943 0.469917 ATCCCATCAAATCGTCGGCT 59.530 50.000 0.00 0.00 0.00 5.52
931 944 0.179084 TCCCATCAAATCGTCGGCTC 60.179 55.000 0.00 0.00 0.00 4.70
932 945 1.160329 CCCATCAAATCGTCGGCTCC 61.160 60.000 0.00 0.00 0.00 4.70
933 946 1.160329 CCATCAAATCGTCGGCTCCC 61.160 60.000 0.00 0.00 0.00 4.30
934 947 0.179073 CATCAAATCGTCGGCTCCCT 60.179 55.000 0.00 0.00 0.00 4.20
935 948 0.105039 ATCAAATCGTCGGCTCCCTC 59.895 55.000 0.00 0.00 0.00 4.30
936 949 1.878522 CAAATCGTCGGCTCCCTCG 60.879 63.158 0.00 0.00 0.00 4.63
937 950 2.050350 AAATCGTCGGCTCCCTCGA 61.050 57.895 0.00 0.00 33.92 4.04
938 951 2.005960 AAATCGTCGGCTCCCTCGAG 62.006 60.000 5.13 5.13 37.31 4.04
958 971 2.352457 CTCGACTCGAATCCGCGG 60.352 66.667 22.12 22.12 34.74 6.46
959 972 3.109612 CTCGACTCGAATCCGCGGT 62.110 63.158 27.15 6.47 34.74 5.68
960 973 1.769098 CTCGACTCGAATCCGCGGTA 61.769 60.000 27.15 12.70 34.74 4.02
962 975 1.430632 GACTCGAATCCGCGGTACA 59.569 57.895 27.15 6.18 35.37 2.90
963 976 0.591741 GACTCGAATCCGCGGTACAG 60.592 60.000 27.15 16.60 35.37 2.74
964 977 1.299165 CTCGAATCCGCGGTACAGG 60.299 63.158 27.15 12.09 35.37 4.00
965 978 1.721664 CTCGAATCCGCGGTACAGGA 61.722 60.000 27.15 15.66 39.04 3.86
969 982 0.175073 AATCCGCGGTACAGGAAGAC 59.825 55.000 27.15 0.00 38.25 3.01
979 992 1.373497 CAGGAAGACGCACGAGCTT 60.373 57.895 2.73 0.00 39.10 3.74
980 993 0.109272 CAGGAAGACGCACGAGCTTA 60.109 55.000 2.73 0.00 39.10 3.09
1023 1037 1.761174 TCCAAAGCTGGTGGAGGTC 59.239 57.895 14.09 0.00 43.97 3.85
1025 1039 0.038744 CCAAAGCTGGTGGAGGTCAT 59.961 55.000 10.61 0.00 38.54 3.06
1037 1051 1.975363 GAGGTCATGCAGCTGTTCGC 61.975 60.000 16.64 0.34 39.57 4.70
1057 1071 2.824489 GCTTCAAGGCGGCCTACC 60.824 66.667 24.16 1.49 31.13 3.18
1058 1072 2.990479 CTTCAAGGCGGCCTACCT 59.010 61.111 24.16 8.35 40.02 3.08
1059 1073 1.153349 CTTCAAGGCGGCCTACCTC 60.153 63.158 24.16 0.00 36.14 3.85
1060 1074 2.595009 CTTCAAGGCGGCCTACCTCC 62.595 65.000 24.16 1.11 41.61 4.30
1061 1075 4.530857 CAAGGCGGCCTACCTCCG 62.531 72.222 24.16 3.08 46.32 4.63
1083 1097 1.010574 CGATCTCGACGTCTGCTCC 60.011 63.158 14.70 0.00 43.02 4.70
1085 1099 0.452184 GATCTCGACGTCTGCTCCAA 59.548 55.000 14.70 0.00 0.00 3.53
1087 1101 0.889638 TCTCGACGTCTGCTCCAACT 60.890 55.000 14.70 0.00 0.00 3.16
1132 1146 4.399395 CCTTGCCTGCTGCCTCGA 62.399 66.667 0.00 0.00 40.16 4.04
1133 1147 2.359107 CTTGCCTGCTGCCTCGAA 60.359 61.111 0.00 0.00 40.16 3.71
1134 1148 1.748122 CTTGCCTGCTGCCTCGAAT 60.748 57.895 0.00 0.00 40.16 3.34
1135 1149 1.712977 CTTGCCTGCTGCCTCGAATC 61.713 60.000 0.00 0.00 40.16 2.52
1136 1150 2.188994 GCCTGCTGCCTCGAATCT 59.811 61.111 0.00 0.00 0.00 2.40
1139 1153 0.177604 CCTGCTGCCTCGAATCTTCT 59.822 55.000 0.00 0.00 0.00 2.85
1152 1166 3.198853 CGAATCTTCTCCTTTCCCTTCCT 59.801 47.826 0.00 0.00 0.00 3.36
1153 1167 4.323868 CGAATCTTCTCCTTTCCCTTCCTT 60.324 45.833 0.00 0.00 0.00 3.36
1154 1168 5.104900 CGAATCTTCTCCTTTCCCTTCCTTA 60.105 44.000 0.00 0.00 0.00 2.69
1155 1169 6.408662 CGAATCTTCTCCTTTCCCTTCCTTAT 60.409 42.308 0.00 0.00 0.00 1.73
1156 1170 5.700402 TCTTCTCCTTTCCCTTCCTTATG 57.300 43.478 0.00 0.00 0.00 1.90
1157 1171 5.101529 TCTTCTCCTTTCCCTTCCTTATGT 58.898 41.667 0.00 0.00 0.00 2.29
1158 1172 5.551977 TCTTCTCCTTTCCCTTCCTTATGTT 59.448 40.000 0.00 0.00 0.00 2.71
1159 1173 5.860648 TCTCCTTTCCCTTCCTTATGTTT 57.139 39.130 0.00 0.00 0.00 2.83
1160 1174 5.816682 TCTCCTTTCCCTTCCTTATGTTTC 58.183 41.667 0.00 0.00 0.00 2.78
1161 1175 5.551977 TCTCCTTTCCCTTCCTTATGTTTCT 59.448 40.000 0.00 0.00 0.00 2.52
1162 1176 6.045577 TCTCCTTTCCCTTCCTTATGTTTCTT 59.954 38.462 0.00 0.00 0.00 2.52
1163 1177 6.620429 TCCTTTCCCTTCCTTATGTTTCTTT 58.380 36.000 0.00 0.00 0.00 2.52
1164 1178 6.719829 TCCTTTCCCTTCCTTATGTTTCTTTC 59.280 38.462 0.00 0.00 0.00 2.62
1165 1179 6.493458 CCTTTCCCTTCCTTATGTTTCTTTCA 59.507 38.462 0.00 0.00 0.00 2.69
1166 1180 7.015195 CCTTTCCCTTCCTTATGTTTCTTTCAA 59.985 37.037 0.00 0.00 0.00 2.69
1167 1181 6.894339 TCCCTTCCTTATGTTTCTTTCAAC 57.106 37.500 0.00 0.00 0.00 3.18
1168 1182 5.773176 TCCCTTCCTTATGTTTCTTTCAACC 59.227 40.000 0.00 0.00 0.00 3.77
1169 1183 5.335661 CCCTTCCTTATGTTTCTTTCAACCG 60.336 44.000 0.00 0.00 0.00 4.44
1170 1184 5.335661 CCTTCCTTATGTTTCTTTCAACCGG 60.336 44.000 0.00 0.00 0.00 5.28
1171 1185 4.076394 TCCTTATGTTTCTTTCAACCGGG 58.924 43.478 6.32 0.00 0.00 5.73
1172 1186 4.076394 CCTTATGTTTCTTTCAACCGGGA 58.924 43.478 6.32 0.00 0.00 5.14
1194 1211 3.255969 CGGGAGGGTTCGAAATCTTTA 57.744 47.619 0.00 0.00 0.00 1.85
1247 2387 0.759346 ACACGTGAAGCTTCCTCCTT 59.241 50.000 25.01 2.68 0.00 3.36
1255 2399 0.897401 AGCTTCCTCCTTTTGCAGGC 60.897 55.000 0.00 0.00 43.55 4.85
1283 2427 1.208165 CCAAGTTCCCCAGCCTACCT 61.208 60.000 0.00 0.00 0.00 3.08
1292 2436 0.036306 CCAGCCTACCTCCGTTGTTT 59.964 55.000 0.00 0.00 0.00 2.83
1307 2451 0.537143 TGTTTCAGCAGACGCCCAAT 60.537 50.000 0.00 0.00 39.83 3.16
1325 2469 1.841302 ATGCCGTGGAGGAGCTCAAA 61.841 55.000 17.19 0.00 45.00 2.69
1349 2493 5.348997 ACTTGCGAGTAAGATAACTTTGCTC 59.651 40.000 4.25 0.00 37.53 4.26
1351 2495 4.864806 TGCGAGTAAGATAACTTTGCTCTG 59.135 41.667 12.00 8.52 36.15 3.35
1354 2498 6.670927 GCGAGTAAGATAACTTTGCTCTGTTG 60.671 42.308 12.00 2.78 36.15 3.33
1355 2499 6.586463 CGAGTAAGATAACTTTGCTCTGTTGA 59.414 38.462 12.00 0.00 36.15 3.18
1356 2500 7.201393 CGAGTAAGATAACTTTGCTCTGTTGAG 60.201 40.741 12.00 0.00 38.99 3.02
1359 2503 6.551385 AGATAACTTTGCTCTGTTGAGTTG 57.449 37.500 0.00 0.00 42.13 3.16
1360 2504 5.471456 AGATAACTTTGCTCTGTTGAGTTGG 59.529 40.000 0.00 0.00 42.13 3.77
1361 2505 3.004752 ACTTTGCTCTGTTGAGTTGGT 57.995 42.857 0.00 0.00 42.13 3.67
1362 2506 2.945668 ACTTTGCTCTGTTGAGTTGGTC 59.054 45.455 0.00 0.00 42.13 4.02
1364 2508 2.245159 TGCTCTGTTGAGTTGGTCAG 57.755 50.000 0.00 0.00 42.13 3.51
1366 2510 2.139118 GCTCTGTTGAGTTGGTCAGAC 58.861 52.381 0.00 0.00 42.13 3.51
1367 2511 2.483714 GCTCTGTTGAGTTGGTCAGACA 60.484 50.000 2.17 0.00 42.13 3.41
1368 2512 3.805108 GCTCTGTTGAGTTGGTCAGACAT 60.805 47.826 2.17 0.00 42.13 3.06
1369 2513 4.384056 CTCTGTTGAGTTGGTCAGACATT 58.616 43.478 2.17 0.00 36.21 2.71
1370 2514 4.129380 TCTGTTGAGTTGGTCAGACATTG 58.871 43.478 2.17 0.00 36.21 2.82
1371 2515 3.213506 TGTTGAGTTGGTCAGACATTGG 58.786 45.455 2.17 0.00 36.21 3.16
1378 2526 1.586154 GGTCAGACATTGGGGTTGCG 61.586 60.000 2.17 0.00 0.00 4.85
1391 2546 2.288666 GGGTTGCGATGATGCTTTCTA 58.711 47.619 0.00 0.00 35.36 2.10
1394 2549 3.058639 GGTTGCGATGATGCTTTCTATCC 60.059 47.826 0.00 0.00 35.36 2.59
1401 2556 3.521560 TGATGCTTTCTATCCGTGTGAC 58.478 45.455 0.00 0.00 0.00 3.67
1402 2557 1.990799 TGCTTTCTATCCGTGTGACG 58.009 50.000 0.00 0.00 42.11 4.35
1411 2566 2.279186 CGTGTGACGGTGTGAGCA 60.279 61.111 0.00 0.00 38.08 4.26
1412 2567 2.302952 CGTGTGACGGTGTGAGCAG 61.303 63.158 0.00 0.00 38.08 4.24
1413 2568 1.956170 GTGTGACGGTGTGAGCAGG 60.956 63.158 0.00 0.00 0.00 4.85
1414 2569 2.357517 GTGACGGTGTGAGCAGGG 60.358 66.667 0.00 0.00 0.00 4.45
1415 2570 2.842462 TGACGGTGTGAGCAGGGT 60.842 61.111 0.00 0.00 0.00 4.34
1416 2571 2.357517 GACGGTGTGAGCAGGGTG 60.358 66.667 0.00 0.00 0.00 4.61
1417 2572 4.626081 ACGGTGTGAGCAGGGTGC 62.626 66.667 0.00 0.00 45.46 5.01
1426 2581 2.730094 GCAGGGTGCAAGTGTTGG 59.270 61.111 0.00 0.00 44.26 3.77
1444 2601 4.039852 TGTTGGGAATTTTTCTTGGTAGGC 59.960 41.667 0.00 0.00 0.00 3.93
1446 2603 3.831911 TGGGAATTTTTCTTGGTAGGCTG 59.168 43.478 0.00 0.00 0.00 4.85
1448 2605 3.511540 GGAATTTTTCTTGGTAGGCTGCT 59.488 43.478 1.79 0.00 0.00 4.24
1456 2613 4.960938 TCTTGGTAGGCTGCTATGTTATG 58.039 43.478 1.79 0.00 0.00 1.90
1457 2614 3.769739 TGGTAGGCTGCTATGTTATGG 57.230 47.619 1.79 0.00 0.00 2.74
1459 2695 3.458118 TGGTAGGCTGCTATGTTATGGTT 59.542 43.478 1.79 0.00 0.00 3.67
1462 2710 5.701290 GGTAGGCTGCTATGTTATGGTTTAG 59.299 44.000 1.79 0.00 0.00 1.85
1463 2711 4.718961 AGGCTGCTATGTTATGGTTTAGG 58.281 43.478 0.00 0.00 0.00 2.69
1466 2714 5.469084 GGCTGCTATGTTATGGTTTAGGTAC 59.531 44.000 0.00 0.00 0.00 3.34
1468 2716 6.202954 GCTGCTATGTTATGGTTTAGGTACAG 59.797 42.308 0.00 0.00 0.00 2.74
1476 2724 8.387813 TGTTATGGTTTAGGTACAGGAAGATTT 58.612 33.333 0.00 0.00 0.00 2.17
1481 2729 6.940867 GGTTTAGGTACAGGAAGATTTTGTCT 59.059 38.462 0.00 0.00 39.43 3.41
1482 2730 8.098912 GGTTTAGGTACAGGAAGATTTTGTCTA 58.901 37.037 0.00 0.00 35.67 2.59
1484 2732 9.886132 TTTAGGTACAGGAAGATTTTGTCTATC 57.114 33.333 0.00 0.00 35.67 2.08
1485 2733 6.574350 AGGTACAGGAAGATTTTGTCTATCG 58.426 40.000 0.00 0.00 35.67 2.92
1487 2735 5.422214 ACAGGAAGATTTTGTCTATCGGT 57.578 39.130 0.00 0.00 35.67 4.69
1498 2746 2.279741 GTCTATCGGTGATGCTTTGCA 58.720 47.619 0.00 0.00 44.86 4.08
1513 2767 4.164294 GCTTTGCATCTTGTTGATCAGTC 58.836 43.478 0.00 0.00 32.05 3.51
1515 2769 5.618056 TTTGCATCTTGTTGATCAGTCTC 57.382 39.130 0.00 0.00 32.05 3.36
1526 2780 7.660030 TGTTGATCAGTCTCTGGTTGATATA 57.340 36.000 0.00 0.00 32.03 0.86
1529 2783 6.695429 TGATCAGTCTCTGGTTGATATATGC 58.305 40.000 0.00 0.00 32.03 3.14
1537 2791 5.125356 TCTGGTTGATATATGCTGTGGTTG 58.875 41.667 0.00 0.00 0.00 3.77
1546 2800 1.388547 TGCTGTGGTTGTCTGGTTTC 58.611 50.000 0.00 0.00 0.00 2.78
1552 2806 4.787551 TGTGGTTGTCTGGTTTCTGTAAT 58.212 39.130 0.00 0.00 0.00 1.89
1560 2814 4.390297 GTCTGGTTTCTGTAATGCTGTCTC 59.610 45.833 0.00 0.00 0.00 3.36
1568 2822 5.173664 TCTGTAATGCTGTCTCAGATTGTG 58.826 41.667 0.66 0.00 32.44 3.33
1569 2823 4.898320 TGTAATGCTGTCTCAGATTGTGT 58.102 39.130 0.66 0.00 32.44 3.72
1570 2824 4.931601 TGTAATGCTGTCTCAGATTGTGTC 59.068 41.667 0.66 0.00 32.44 3.67
1571 2825 2.070262 TGCTGTCTCAGATTGTGTCG 57.930 50.000 0.66 0.00 32.44 4.35
1572 2826 1.341209 TGCTGTCTCAGATTGTGTCGT 59.659 47.619 0.66 0.00 32.44 4.34
1591 2864 3.119637 TCGTGATATGACTCGTTCAGCAA 60.120 43.478 0.00 0.00 37.77 3.91
1593 2866 4.177026 GTGATATGACTCGTTCAGCAACT 58.823 43.478 0.00 0.00 37.77 3.16
1594 2867 4.266502 GTGATATGACTCGTTCAGCAACTC 59.733 45.833 0.00 0.00 37.77 3.01
1596 2869 5.357032 TGATATGACTCGTTCAGCAACTCTA 59.643 40.000 0.00 0.00 37.77 2.43
1598 2871 3.639538 TGACTCGTTCAGCAACTCTAAC 58.360 45.455 0.00 0.00 0.00 2.34
1601 2874 3.069729 ACTCGTTCAGCAACTCTAACCTT 59.930 43.478 0.00 0.00 0.00 3.50
1602 2875 3.390135 TCGTTCAGCAACTCTAACCTTG 58.610 45.455 0.00 0.00 0.00 3.61
1603 2876 2.480419 CGTTCAGCAACTCTAACCTTGG 59.520 50.000 0.00 0.00 0.00 3.61
1604 2877 2.185004 TCAGCAACTCTAACCTTGGC 57.815 50.000 0.00 0.00 0.00 4.52
1605 2878 1.699634 TCAGCAACTCTAACCTTGGCT 59.300 47.619 0.00 0.00 0.00 4.75
1606 2879 2.079925 CAGCAACTCTAACCTTGGCTC 58.920 52.381 0.00 0.00 0.00 4.70
1607 2880 1.699634 AGCAACTCTAACCTTGGCTCA 59.300 47.619 0.00 0.00 0.00 4.26
1608 2881 2.079925 GCAACTCTAACCTTGGCTCAG 58.920 52.381 0.00 0.00 0.00 3.35
1609 2882 2.079925 CAACTCTAACCTTGGCTCAGC 58.920 52.381 0.00 0.00 0.00 4.26
1610 2883 1.650528 ACTCTAACCTTGGCTCAGCT 58.349 50.000 0.00 0.00 0.00 4.24
1611 2884 1.277557 ACTCTAACCTTGGCTCAGCTG 59.722 52.381 7.63 7.63 0.00 4.24
1612 2885 1.552337 CTCTAACCTTGGCTCAGCTGA 59.448 52.381 17.19 17.19 0.00 4.26
1613 2886 1.977854 TCTAACCTTGGCTCAGCTGAA 59.022 47.619 18.85 0.00 0.00 3.02
1614 2887 2.371841 TCTAACCTTGGCTCAGCTGAAA 59.628 45.455 18.85 8.51 0.00 2.69
1615 2888 1.322442 AACCTTGGCTCAGCTGAAAC 58.678 50.000 18.85 13.66 0.00 2.78
1616 2889 0.475906 ACCTTGGCTCAGCTGAAACT 59.524 50.000 18.85 0.00 0.00 2.66
1617 2890 1.133668 ACCTTGGCTCAGCTGAAACTT 60.134 47.619 18.85 0.00 0.00 2.66
1618 2891 1.268899 CCTTGGCTCAGCTGAAACTTG 59.731 52.381 18.85 6.71 0.00 3.16
1619 2892 1.268899 CTTGGCTCAGCTGAAACTTGG 59.731 52.381 18.85 5.93 0.00 3.61
1620 2893 0.183492 TGGCTCAGCTGAAACTTGGT 59.817 50.000 18.85 0.00 0.00 3.67
1621 2894 1.322442 GGCTCAGCTGAAACTTGGTT 58.678 50.000 18.85 0.00 0.00 3.67
1622 2895 1.268079 GGCTCAGCTGAAACTTGGTTC 59.732 52.381 18.85 0.00 0.00 3.62
1623 2896 1.949525 GCTCAGCTGAAACTTGGTTCA 59.050 47.619 18.85 0.97 36.15 3.18
1644 2919 7.291567 GTTCAGTACTTCAGTTAACTGCAATC 58.708 38.462 27.49 16.54 43.46 2.67
1652 2927 5.555966 TCAGTTAACTGCAATCCATGTGTA 58.444 37.500 27.49 5.80 43.46 2.90
1653 2928 6.000840 TCAGTTAACTGCAATCCATGTGTAA 58.999 36.000 27.49 5.38 43.46 2.41
1656 2931 4.621068 AACTGCAATCCATGTGTAATCG 57.379 40.909 0.00 0.00 0.00 3.34
1657 2932 3.872696 ACTGCAATCCATGTGTAATCGA 58.127 40.909 0.00 0.00 0.00 3.59
1665 2940 7.095060 GCAATCCATGTGTAATCGATCTGTAAT 60.095 37.037 0.00 0.00 0.00 1.89
1666 2941 9.423061 CAATCCATGTGTAATCGATCTGTAATA 57.577 33.333 0.00 0.00 0.00 0.98
1667 2942 8.988064 ATCCATGTGTAATCGATCTGTAATAC 57.012 34.615 0.00 0.00 0.00 1.89
1668 2943 8.178313 TCCATGTGTAATCGATCTGTAATACT 57.822 34.615 0.00 0.00 0.00 2.12
1686 2961 9.709495 TGTAATACTAGTTGATACGTTTGGTTT 57.291 29.630 0.00 0.00 0.00 3.27
1689 2964 9.498176 AATACTAGTTGATACGTTTGGTTTCTT 57.502 29.630 0.00 0.00 0.00 2.52
1691 2966 5.432885 AGTTGATACGTTTGGTTTCTTGG 57.567 39.130 0.00 0.00 0.00 3.61
1693 2968 6.056884 AGTTGATACGTTTGGTTTCTTGGTA 58.943 36.000 0.00 0.00 0.00 3.25
1694 2969 6.543100 AGTTGATACGTTTGGTTTCTTGGTAA 59.457 34.615 0.00 0.00 0.00 2.85
1695 2970 7.229907 AGTTGATACGTTTGGTTTCTTGGTAAT 59.770 33.333 0.00 0.00 0.00 1.89
1696 2971 8.505625 GTTGATACGTTTGGTTTCTTGGTAATA 58.494 33.333 0.00 0.00 0.00 0.98
1700 2975 7.425577 ACGTTTGGTTTCTTGGTAATACTAC 57.574 36.000 0.00 0.00 0.00 2.73
1703 2978 7.173735 CGTTTGGTTTCTTGGTAATACTACCTT 59.826 37.037 1.49 0.00 46.97 3.50
1713 2988 6.199376 TGGTAATACTACCTTGAGGATGTGA 58.801 40.000 3.59 0.00 46.97 3.58
1715 2990 6.324254 GGTAATACTACCTTGAGGATGTGACT 59.676 42.308 3.59 0.00 43.92 3.41
1718 2993 2.030027 ACCTTGAGGATGTGACTGGA 57.970 50.000 3.59 0.00 38.94 3.86
1726 3001 5.272402 TGAGGATGTGACTGGAGATCTTTA 58.728 41.667 0.00 0.00 0.00 1.85
1727 3002 5.901853 TGAGGATGTGACTGGAGATCTTTAT 59.098 40.000 0.00 0.00 0.00 1.40
1728 3003 6.172136 AGGATGTGACTGGAGATCTTTATG 57.828 41.667 0.00 0.00 0.00 1.90
1729 3004 5.071519 AGGATGTGACTGGAGATCTTTATGG 59.928 44.000 0.00 0.00 0.00 2.74
1738 3013 4.141482 TGGAGATCTTTATGGGCCTAACAC 60.141 45.833 4.53 0.00 0.00 3.32
1739 3014 4.103311 GGAGATCTTTATGGGCCTAACACT 59.897 45.833 4.53 0.00 0.00 3.55
1740 3015 5.041191 AGATCTTTATGGGCCTAACACTG 57.959 43.478 4.53 0.00 0.00 3.66
1741 3016 3.644966 TCTTTATGGGCCTAACACTGG 57.355 47.619 4.53 0.00 0.00 4.00
1742 3017 3.186283 TCTTTATGGGCCTAACACTGGA 58.814 45.455 4.53 0.00 0.00 3.86
1743 3018 3.785887 TCTTTATGGGCCTAACACTGGAT 59.214 43.478 4.53 0.00 0.00 3.41
1752 3027 3.065925 GCCTAACACTGGATCTGATTTGC 59.934 47.826 0.00 0.00 0.00 3.68
1753 3028 3.629398 CCTAACACTGGATCTGATTTGCC 59.371 47.826 0.00 0.00 0.00 4.52
1765 3040 1.546923 TGATTTGCCTTGGTCATGCAG 59.453 47.619 0.00 0.00 36.21 4.41
1772 3047 2.352715 GCCTTGGTCATGCAGTTTTACC 60.353 50.000 0.00 0.00 0.00 2.85
1786 3061 6.603997 TGCAGTTTTACCTTTAGGAGTTTCAA 59.396 34.615 2.06 0.00 38.94 2.69
1788 3063 8.141909 GCAGTTTTACCTTTAGGAGTTTCAATT 58.858 33.333 2.06 0.00 38.94 2.32
1791 3066 9.459640 GTTTTACCTTTAGGAGTTTCAATTGAC 57.540 33.333 7.89 0.00 38.94 3.18
1799 3074 3.319122 GGAGTTTCAATTGACTGGTTGCT 59.681 43.478 7.89 0.00 0.00 3.91
1820 3099 7.092137 TGCTGCCATATCAATTTATAGATGC 57.908 36.000 0.00 0.00 0.00 3.91
1869 3161 2.289072 ACGCTAGTGATGCTTGTCAGTT 60.289 45.455 10.99 0.00 33.90 3.16
1870 3162 2.093310 CGCTAGTGATGCTTGTCAGTTG 59.907 50.000 0.00 1.35 33.90 3.16
1871 3163 3.070018 GCTAGTGATGCTTGTCAGTTGT 58.930 45.455 0.00 0.00 33.90 3.32
1872 3164 3.120408 GCTAGTGATGCTTGTCAGTTGTG 60.120 47.826 0.00 0.00 33.90 3.33
1873 3165 3.198409 AGTGATGCTTGTCAGTTGTGA 57.802 42.857 0.00 0.00 0.00 3.58
1874 3166 3.544684 AGTGATGCTTGTCAGTTGTGAA 58.455 40.909 0.00 0.00 33.27 3.18
1875 3167 3.313526 AGTGATGCTTGTCAGTTGTGAAC 59.686 43.478 0.00 0.00 33.27 3.18
1876 3168 3.313526 GTGATGCTTGTCAGTTGTGAACT 59.686 43.478 0.00 0.00 44.06 3.01
1877 3169 3.947196 TGATGCTTGTCAGTTGTGAACTT 59.053 39.130 0.00 0.00 40.46 2.66
1902 3194 6.775142 TGTGATAATGTGAACTCTGGGAAAAA 59.225 34.615 0.00 0.00 0.00 1.94
1928 3222 1.335964 TGCTTTCTCGACTTGACCTCG 60.336 52.381 0.00 0.00 0.00 4.63
1931 3225 0.879765 TTCTCGACTTGACCTCGGAC 59.120 55.000 0.00 0.00 0.00 4.79
1932 3226 0.036448 TCTCGACTTGACCTCGGACT 59.964 55.000 0.00 0.00 0.00 3.85
1933 3227 0.882474 CTCGACTTGACCTCGGACTT 59.118 55.000 0.00 0.00 0.00 3.01
2018 3353 5.063817 TGCATGAACTCTTATGTCGATTGTG 59.936 40.000 0.00 0.00 0.00 3.33
2026 3361 5.416083 TCTTATGTCGATTGTGGTAACCTG 58.584 41.667 0.00 0.00 0.00 4.00
2029 3364 2.103432 TGTCGATTGTGGTAACCTGTGT 59.897 45.455 0.00 0.00 0.00 3.72
2034 3369 1.796017 TGTGGTAACCTGTGTCCTGA 58.204 50.000 0.00 0.00 0.00 3.86
2059 3402 9.132521 GATTTTTGAGGAAAATGTGTGTCTATG 57.867 33.333 1.82 0.00 45.54 2.23
2068 3411 8.511321 GGAAAATGTGTGTCTATGTTGTTATGA 58.489 33.333 0.00 0.00 0.00 2.15
2077 3420 7.710907 GTGTCTATGTTGTTATGATCCAGCTAA 59.289 37.037 0.00 0.00 0.00 3.09
2084 3427 9.851686 TGTTGTTATGATCCAGCTAATTAGAAT 57.148 29.630 16.85 0.74 0.00 2.40
2095 3440 8.314751 TCCAGCTAATTAGAATTATACTCTGGC 58.685 37.037 16.85 0.00 36.03 4.85
2101 3446 7.633018 ATTAGAATTATACTCTGGCCTTCCA 57.367 36.000 3.32 0.00 40.85 3.53
2105 3450 8.045720 AGAATTATACTCTGGCCTTCCAATTA 57.954 34.615 3.32 0.00 42.91 1.40
2106 3451 8.673251 AGAATTATACTCTGGCCTTCCAATTAT 58.327 33.333 3.32 0.00 42.91 1.28
2107 3452 8.870075 AATTATACTCTGGCCTTCCAATTATC 57.130 34.615 3.32 0.00 42.91 1.75
2108 3453 3.584733 ACTCTGGCCTTCCAATTATCC 57.415 47.619 3.32 0.00 42.91 2.59
2109 3454 3.126453 ACTCTGGCCTTCCAATTATCCT 58.874 45.455 3.32 0.00 42.91 3.24
2110 3455 3.529319 ACTCTGGCCTTCCAATTATCCTT 59.471 43.478 3.32 0.00 42.91 3.36
2116 3461 4.100035 GGCCTTCCAATTATCCTTTCCTTG 59.900 45.833 0.00 0.00 0.00 3.61
2118 3463 5.163509 GCCTTCCAATTATCCTTTCCTTGAC 60.164 44.000 0.00 0.00 0.00 3.18
2125 3470 3.795688 ATCCTTTCCTTGACAGAGCAA 57.204 42.857 0.00 0.00 0.00 3.91
2127 3472 2.439507 TCCTTTCCTTGACAGAGCAACT 59.560 45.455 0.00 0.00 0.00 3.16
2136 3481 6.014584 TCCTTGACAGAGCAACTACTAAATCA 60.015 38.462 0.00 0.00 0.00 2.57
2138 3483 7.335422 CCTTGACAGAGCAACTACTAAATCAAT 59.665 37.037 0.00 0.00 0.00 2.57
2146 3491 8.045176 AGCAACTACTAAATCAATCTGAAACC 57.955 34.615 0.00 0.00 0.00 3.27
2169 3514 4.524802 TTCAGGGGACATTTATGAGCAT 57.475 40.909 0.00 0.00 0.00 3.79
2176 3521 4.498682 GGGACATTTATGAGCATGCAGTTC 60.499 45.833 21.98 9.59 0.00 3.01
2179 3524 5.888105 ACATTTATGAGCATGCAGTTCTTC 58.112 37.500 21.98 7.99 0.00 2.87
2181 3526 5.808042 TTTATGAGCATGCAGTTCTTCTC 57.192 39.130 21.98 6.41 0.00 2.87
2192 3537 4.094887 TGCAGTTCTTCTCAGTGTGAAAAC 59.905 41.667 8.83 13.64 0.00 2.43
2193 3538 4.094887 GCAGTTCTTCTCAGTGTGAAAACA 59.905 41.667 21.38 6.40 0.00 2.83
2199 3544 6.586344 TCTTCTCAGTGTGAAAACAGAAGAT 58.414 36.000 11.97 0.00 36.59 2.40
2238 3583 1.377994 CTTCTGCCACCTCAAGCCT 59.622 57.895 0.00 0.00 0.00 4.58
2281 3636 7.415877 GGTTAGTTTCTTCTTACCACTTTGCAA 60.416 37.037 0.00 0.00 37.17 4.08
2325 3680 4.191544 TGTGTAGGCTGTCATTCTAATGC 58.808 43.478 0.00 0.00 36.36 3.56
2432 3797 8.644374 TTTGGGTATAAGTTGCTAAATGAGTT 57.356 30.769 0.00 0.00 0.00 3.01
2468 3833 5.836705 TGGATTATCATGGGAAGGTCAAAA 58.163 37.500 0.00 0.00 0.00 2.44
2575 3967 5.713025 AGTTATGTGGTGCTAATTTTGCTG 58.287 37.500 4.54 0.00 0.00 4.41
2607 4000 6.057321 TGGGTAGTCGAACTTGGAAATTAT 57.943 37.500 0.00 0.00 0.00 1.28
2611 4004 8.771766 GGGTAGTCGAACTTGGAAATTATTATC 58.228 37.037 0.00 0.00 0.00 1.75
2692 4110 0.676782 GTGAGCCGCAATACCCTTGT 60.677 55.000 0.00 0.00 0.00 3.16
3062 6228 1.589113 GGTTGAGCTCGAGCAGTCT 59.411 57.895 36.87 18.48 45.16 3.24
3077 6243 0.397816 AGTCTCTTATGGAGGGCGCT 60.398 55.000 7.64 1.38 42.10 5.92
3099 6265 4.609018 ACCGCGTGCTGAGTGCTT 62.609 61.111 4.92 0.00 43.37 3.91
3125 6291 1.133025 GCTGTGCCGCATGAAAGTTAT 59.867 47.619 0.00 0.00 0.00 1.89
3150 6316 1.482593 ACTTCATGGACCTTCTAGCCG 59.517 52.381 0.00 0.00 0.00 5.52
3173 6339 5.417754 AAAGAGTAGTTAGGTAAGTGGGC 57.582 43.478 0.00 0.00 0.00 5.36
3226 6392 4.740934 GCCGATTTACTCCTTATGCAGTCT 60.741 45.833 0.00 0.00 0.00 3.24
3344 6510 7.645058 TGGATTTGTAGAAATTGGATCTTCC 57.355 36.000 0.00 0.00 32.49 3.46
3468 6986 5.830912 TGTTGAGCTCATGATTTCGTTTTT 58.169 33.333 19.04 0.00 0.00 1.94
3509 7027 6.365520 ACATTGGACCCTTAATGGAGATTAC 58.634 40.000 3.52 0.00 38.33 1.89
3523 7041 4.540099 TGGAGATTACAAAGATGGGGAGTT 59.460 41.667 0.00 0.00 0.00 3.01
3592 7116 1.777878 TCCTTCAAGCCCAACAGGTTA 59.222 47.619 0.00 0.00 38.26 2.85
3599 7123 0.598065 GCCCAACAGGTTAGCAACTG 59.402 55.000 0.00 0.00 40.48 3.16
3985 7509 8.916062 TGCATATGAATCATTTTGACTTGGTAT 58.084 29.630 6.97 0.00 0.00 2.73
4005 7529 5.583457 GGTATGTACACATGTTCCCAGTAAC 59.417 44.000 0.00 0.00 37.15 2.50
4006 7530 3.655486 TGTACACATGTTCCCAGTAACG 58.345 45.455 0.00 0.00 31.76 3.18
4007 7531 2.178912 ACACATGTTCCCAGTAACGG 57.821 50.000 0.00 0.00 31.76 4.44
4111 7635 5.747197 CAGAGCCTGCAAACATGAATAATTC 59.253 40.000 0.00 0.00 0.00 2.17
4116 7640 7.118680 AGCCTGCAAACATGAATAATTCAAAAG 59.881 33.333 0.00 0.00 43.95 2.27
4152 7676 6.429791 TCGAAATAATCCAAAGCGATTGAA 57.570 33.333 6.83 0.00 41.85 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.038247 ACGTGTTTTCAACGACTTCTTTT 57.962 34.783 2.62 0.00 0.00 2.27
21 22 2.693267 ATAAAGAAGTGGCCGGAGAC 57.307 50.000 5.05 0.00 0.00 3.36
329 337 8.706035 GTGGTACGCTAGTTACCATTATATTTG 58.294 37.037 21.50 0.00 44.58 2.32
375 384 4.096532 GGGTGAAAAGTTATCAGGCTTAGC 59.903 45.833 0.00 0.00 0.00 3.09
484 494 3.499338 TCAAACCATTGGTCAGCTTGAT 58.501 40.909 9.22 0.00 37.15 2.57
489 499 0.244721 GGCTCAAACCATTGGTCAGC 59.755 55.000 19.27 19.27 37.15 4.26
653 666 3.667360 TCACATATGCATGCGAGCTTAT 58.333 40.909 14.09 1.94 35.86 1.73
730 743 3.879932 AAAAAGACGGAGAGCTTTTCG 57.120 42.857 2.84 2.84 41.60 3.46
750 763 9.691362 AGCTATTCGCAAAATAAAAGAAAGAAA 57.309 25.926 0.00 0.00 42.61 2.52
751 764 9.341899 GAGCTATTCGCAAAATAAAAGAAAGAA 57.658 29.630 0.00 0.00 42.61 2.52
752 765 8.730680 AGAGCTATTCGCAAAATAAAAGAAAGA 58.269 29.630 0.00 0.00 42.61 2.52
753 766 8.902040 AGAGCTATTCGCAAAATAAAAGAAAG 57.098 30.769 0.00 0.00 42.61 2.62
754 767 7.968405 GGAGAGCTATTCGCAAAATAAAAGAAA 59.032 33.333 0.00 0.00 42.61 2.52
755 768 7.472543 GGAGAGCTATTCGCAAAATAAAAGAA 58.527 34.615 0.00 0.00 42.61 2.52
756 769 6.238103 CGGAGAGCTATTCGCAAAATAAAAGA 60.238 38.462 0.00 0.00 42.61 2.52
757 770 5.904080 CGGAGAGCTATTCGCAAAATAAAAG 59.096 40.000 0.00 0.00 42.61 2.27
758 771 5.353123 ACGGAGAGCTATTCGCAAAATAAAA 59.647 36.000 9.43 0.00 42.61 1.52
759 772 4.873827 ACGGAGAGCTATTCGCAAAATAAA 59.126 37.500 9.43 0.00 42.61 1.40
760 773 4.439057 ACGGAGAGCTATTCGCAAAATAA 58.561 39.130 9.43 0.00 42.61 1.40
761 774 4.049186 GACGGAGAGCTATTCGCAAAATA 58.951 43.478 9.43 0.00 42.61 1.40
762 775 2.866762 GACGGAGAGCTATTCGCAAAAT 59.133 45.455 9.43 0.00 42.61 1.82
763 776 2.268298 GACGGAGAGCTATTCGCAAAA 58.732 47.619 9.43 0.00 42.61 2.44
764 777 1.470979 GGACGGAGAGCTATTCGCAAA 60.471 52.381 9.43 0.00 42.61 3.68
765 778 0.102481 GGACGGAGAGCTATTCGCAA 59.898 55.000 9.43 0.00 42.61 4.85
766 779 0.752009 AGGACGGAGAGCTATTCGCA 60.752 55.000 9.43 0.00 42.61 5.10
767 780 0.386113 AAGGACGGAGAGCTATTCGC 59.614 55.000 9.43 1.76 39.57 4.70
768 781 2.873133 AAAGGACGGAGAGCTATTCG 57.127 50.000 7.67 7.67 0.00 3.34
769 782 4.650754 TGTAAAGGACGGAGAGCTATTC 57.349 45.455 0.00 0.00 0.00 1.75
770 783 4.466726 AGTTGTAAAGGACGGAGAGCTATT 59.533 41.667 0.00 0.00 0.00 1.73
771 784 4.024670 AGTTGTAAAGGACGGAGAGCTAT 58.975 43.478 0.00 0.00 0.00 2.97
772 785 3.192844 CAGTTGTAAAGGACGGAGAGCTA 59.807 47.826 0.00 0.00 0.00 3.32
773 786 2.028930 CAGTTGTAAAGGACGGAGAGCT 60.029 50.000 0.00 0.00 0.00 4.09
774 787 2.338500 CAGTTGTAAAGGACGGAGAGC 58.662 52.381 0.00 0.00 0.00 4.09
775 788 2.288825 TGCAGTTGTAAAGGACGGAGAG 60.289 50.000 0.00 0.00 0.00 3.20
776 789 1.689813 TGCAGTTGTAAAGGACGGAGA 59.310 47.619 0.00 0.00 0.00 3.71
777 790 2.163818 TGCAGTTGTAAAGGACGGAG 57.836 50.000 0.00 0.00 0.00 4.63
778 791 2.215196 GTTGCAGTTGTAAAGGACGGA 58.785 47.619 0.00 0.00 0.00 4.69
779 792 1.944024 TGTTGCAGTTGTAAAGGACGG 59.056 47.619 0.00 0.00 0.00 4.79
780 793 2.598907 CGTGTTGCAGTTGTAAAGGACG 60.599 50.000 0.00 0.00 0.00 4.79
781 794 2.286772 CCGTGTTGCAGTTGTAAAGGAC 60.287 50.000 0.00 0.00 0.00 3.85
782 795 1.944024 CCGTGTTGCAGTTGTAAAGGA 59.056 47.619 0.00 0.00 0.00 3.36
783 796 1.599419 GCCGTGTTGCAGTTGTAAAGG 60.599 52.381 0.00 0.00 0.00 3.11
784 797 1.599419 GGCCGTGTTGCAGTTGTAAAG 60.599 52.381 0.00 0.00 0.00 1.85
785 798 0.382515 GGCCGTGTTGCAGTTGTAAA 59.617 50.000 0.00 0.00 0.00 2.01
786 799 0.748367 TGGCCGTGTTGCAGTTGTAA 60.748 50.000 0.00 0.00 0.00 2.41
787 800 1.153147 TGGCCGTGTTGCAGTTGTA 60.153 52.632 0.00 0.00 0.00 2.41
788 801 2.439338 TGGCCGTGTTGCAGTTGT 60.439 55.556 0.00 0.00 0.00 3.32
789 802 2.026014 GTGGCCGTGTTGCAGTTG 59.974 61.111 0.00 0.00 0.00 3.16
790 803 2.439338 TGTGGCCGTGTTGCAGTT 60.439 55.556 0.00 0.00 0.00 3.16
791 804 3.209097 GTGTGGCCGTGTTGCAGT 61.209 61.111 0.00 0.00 0.00 4.40
792 805 4.312231 CGTGTGGCCGTGTTGCAG 62.312 66.667 0.00 0.00 0.00 4.41
803 816 2.157305 ATTGCAACATGCCCGTGTGG 62.157 55.000 0.00 0.00 44.23 4.17
804 817 0.733566 GATTGCAACATGCCCGTGTG 60.734 55.000 0.00 0.00 44.23 3.82
805 818 1.586028 GATTGCAACATGCCCGTGT 59.414 52.632 0.00 0.00 44.23 4.49
806 819 1.153784 GGATTGCAACATGCCCGTG 60.154 57.895 0.00 0.00 44.23 4.94
807 820 2.699768 CGGATTGCAACATGCCCGT 61.700 57.895 0.00 0.00 44.23 5.28
808 821 2.102749 CGGATTGCAACATGCCCG 59.897 61.111 0.00 6.48 44.23 6.13
809 822 2.495866 CCGGATTGCAACATGCCC 59.504 61.111 0.00 0.00 44.23 5.36
810 823 2.202783 GCCGGATTGCAACATGCC 60.203 61.111 5.05 0.00 44.23 4.40
811 824 1.517694 CAGCCGGATTGCAACATGC 60.518 57.895 5.05 2.33 45.29 4.06
812 825 0.099968 CTCAGCCGGATTGCAACATG 59.900 55.000 5.05 0.00 0.00 3.21
813 826 1.660560 GCTCAGCCGGATTGCAACAT 61.661 55.000 5.05 0.00 0.00 2.71
814 827 2.334946 GCTCAGCCGGATTGCAACA 61.335 57.895 5.05 0.00 0.00 3.33
815 828 1.986575 GAGCTCAGCCGGATTGCAAC 61.987 60.000 5.05 0.70 0.00 4.17
816 829 1.746615 GAGCTCAGCCGGATTGCAA 60.747 57.895 5.05 0.00 0.00 4.08
817 830 2.124983 GAGCTCAGCCGGATTGCA 60.125 61.111 5.05 0.00 0.00 4.08
818 831 1.886777 GAGAGCTCAGCCGGATTGC 60.887 63.158 17.77 5.87 0.00 3.56
819 832 1.591059 CGAGAGCTCAGCCGGATTG 60.591 63.158 17.77 2.05 0.00 2.67
820 833 0.752009 TACGAGAGCTCAGCCGGATT 60.752 55.000 17.77 3.63 0.00 3.01
821 834 0.538516 ATACGAGAGCTCAGCCGGAT 60.539 55.000 17.77 14.94 0.00 4.18
822 835 0.108019 TATACGAGAGCTCAGCCGGA 59.892 55.000 17.77 13.23 0.00 5.14
823 836 0.519519 CTATACGAGAGCTCAGCCGG 59.480 60.000 17.77 0.00 0.00 6.13
824 837 0.519519 CCTATACGAGAGCTCAGCCG 59.480 60.000 17.77 17.66 0.00 5.52
825 838 1.898902 TCCTATACGAGAGCTCAGCC 58.101 55.000 17.77 3.57 0.00 4.85
826 839 2.350007 CGTTCCTATACGAGAGCTCAGC 60.350 54.545 17.77 6.51 43.99 4.26
827 840 2.350007 GCGTTCCTATACGAGAGCTCAG 60.350 54.545 17.77 12.04 43.99 3.35
828 841 1.602851 GCGTTCCTATACGAGAGCTCA 59.397 52.381 17.77 0.00 43.99 4.26
829 842 1.398705 CGCGTTCCTATACGAGAGCTC 60.399 57.143 5.27 5.27 42.74 4.09
830 843 0.587285 CGCGTTCCTATACGAGAGCT 59.413 55.000 0.00 0.00 42.74 4.09
831 844 0.997726 GCGCGTTCCTATACGAGAGC 60.998 60.000 8.43 1.00 42.74 4.09
832 845 0.721811 CGCGCGTTCCTATACGAGAG 60.722 60.000 24.19 0.00 42.74 3.20
833 846 1.277739 CGCGCGTTCCTATACGAGA 59.722 57.895 24.19 0.00 42.74 4.04
834 847 0.590732 AACGCGCGTTCCTATACGAG 60.591 55.000 39.88 5.36 43.99 4.18
835 848 0.655208 TAACGCGCGTTCCTATACGA 59.345 50.000 46.73 27.02 43.99 3.43
836 849 0.766530 GTAACGCGCGTTCCTATACG 59.233 55.000 46.73 10.99 44.09 3.06
837 850 0.766530 CGTAACGCGCGTTCCTATAC 59.233 55.000 46.73 35.78 39.31 1.47
838 851 3.147313 CGTAACGCGCGTTCCTATA 57.853 52.632 46.73 29.28 39.31 1.31
839 852 3.987187 CGTAACGCGCGTTCCTAT 58.013 55.556 46.73 28.75 39.31 2.57
870 883 2.054140 TTTTGTTCGCACCGTCAGCC 62.054 55.000 0.00 0.00 0.00 4.85
871 884 0.248296 TTTTTGTTCGCACCGTCAGC 60.248 50.000 0.00 0.00 0.00 4.26
872 885 3.907927 TTTTTGTTCGCACCGTCAG 57.092 47.368 0.00 0.00 0.00 3.51
898 911 2.139118 GATGGGATTCTAGCGCTCAAC 58.861 52.381 16.34 0.00 0.00 3.18
899 912 1.762370 TGATGGGATTCTAGCGCTCAA 59.238 47.619 16.34 9.00 0.00 3.02
900 913 1.413118 TGATGGGATTCTAGCGCTCA 58.587 50.000 16.34 3.61 0.00 4.26
901 914 2.533266 TTGATGGGATTCTAGCGCTC 57.467 50.000 16.34 0.00 0.00 5.03
902 915 3.406764 GATTTGATGGGATTCTAGCGCT 58.593 45.455 17.26 17.26 0.00 5.92
903 916 2.158449 CGATTTGATGGGATTCTAGCGC 59.842 50.000 0.00 0.00 0.00 5.92
904 917 3.393800 ACGATTTGATGGGATTCTAGCG 58.606 45.455 0.00 0.00 0.00 4.26
905 918 3.430218 CGACGATTTGATGGGATTCTAGC 59.570 47.826 0.00 0.00 0.00 3.42
906 919 3.990469 CCGACGATTTGATGGGATTCTAG 59.010 47.826 0.00 0.00 0.00 2.43
907 920 3.802329 GCCGACGATTTGATGGGATTCTA 60.802 47.826 0.00 0.00 0.00 2.10
908 921 2.838736 CCGACGATTTGATGGGATTCT 58.161 47.619 0.00 0.00 0.00 2.40
909 922 1.264288 GCCGACGATTTGATGGGATTC 59.736 52.381 0.00 0.00 0.00 2.52
910 923 1.134098 AGCCGACGATTTGATGGGATT 60.134 47.619 0.00 0.00 0.00 3.01
911 924 0.469917 AGCCGACGATTTGATGGGAT 59.530 50.000 0.00 0.00 0.00 3.85
912 925 0.179084 GAGCCGACGATTTGATGGGA 60.179 55.000 0.00 0.00 0.00 4.37
913 926 1.160329 GGAGCCGACGATTTGATGGG 61.160 60.000 0.00 0.00 0.00 4.00
914 927 1.160329 GGGAGCCGACGATTTGATGG 61.160 60.000 0.00 0.00 0.00 3.51
915 928 0.179073 AGGGAGCCGACGATTTGATG 60.179 55.000 0.00 0.00 0.00 3.07
916 929 0.105039 GAGGGAGCCGACGATTTGAT 59.895 55.000 0.00 0.00 0.00 2.57
917 930 1.515954 GAGGGAGCCGACGATTTGA 59.484 57.895 0.00 0.00 0.00 2.69
918 931 1.878522 CGAGGGAGCCGACGATTTG 60.879 63.158 0.00 0.00 32.43 2.32
919 932 2.005960 CTCGAGGGAGCCGACGATTT 62.006 60.000 3.91 0.00 36.89 2.17
920 933 2.439701 TCGAGGGAGCCGACGATT 60.440 61.111 0.00 0.00 34.13 3.34
921 934 2.902846 CTCGAGGGAGCCGACGAT 60.903 66.667 3.91 0.00 36.89 3.73
936 949 1.360911 GGATTCGAGTCGAGGCCTC 59.639 63.158 23.79 23.79 37.14 4.70
937 950 2.482333 CGGATTCGAGTCGAGGCCT 61.482 63.158 24.31 3.86 37.14 5.19
938 951 2.026301 CGGATTCGAGTCGAGGCC 59.974 66.667 15.88 18.33 37.14 5.19
945 958 1.432251 CTGTACCGCGGATTCGAGT 59.568 57.895 35.90 10.28 39.00 4.18
958 971 1.071567 GCTCGTGCGTCTTCCTGTAC 61.072 60.000 0.00 0.00 0.00 2.90
959 972 1.211969 GCTCGTGCGTCTTCCTGTA 59.788 57.895 0.00 0.00 0.00 2.74
960 973 2.049063 GCTCGTGCGTCTTCCTGT 60.049 61.111 0.00 0.00 0.00 4.00
962 975 0.171455 CTAAGCTCGTGCGTCTTCCT 59.829 55.000 0.14 0.00 45.42 3.36
963 976 1.414527 GCTAAGCTCGTGCGTCTTCC 61.415 60.000 0.14 0.00 45.42 3.46
964 977 1.414527 GGCTAAGCTCGTGCGTCTTC 61.415 60.000 0.14 0.00 45.42 2.87
965 978 1.446272 GGCTAAGCTCGTGCGTCTT 60.446 57.895 0.14 0.00 45.42 3.01
1008 1022 0.610232 GCATGACCTCCACCAGCTTT 60.610 55.000 0.00 0.00 0.00 3.51
1055 1069 3.893763 CGAGATCGCTGCGGAGGT 61.894 66.667 23.03 6.04 0.00 3.85
1057 1071 2.352915 GTCGAGATCGCTGCGGAG 60.353 66.667 23.03 0.00 39.60 4.63
1058 1072 4.237809 CGTCGAGATCGCTGCGGA 62.238 66.667 23.03 8.07 39.60 5.54
1059 1073 4.538283 ACGTCGAGATCGCTGCGG 62.538 66.667 23.03 5.50 39.60 5.69
1060 1074 3.013990 GACGTCGAGATCGCTGCG 61.014 66.667 17.25 17.25 39.60 5.18
1061 1075 1.936880 CAGACGTCGAGATCGCTGC 60.937 63.158 10.46 0.00 39.60 5.25
1066 1080 0.452184 TTGGAGCAGACGTCGAGATC 59.548 55.000 17.27 17.27 0.00 2.75
1083 1097 0.037882 TGAGCTGCGAGAGGAAGTTG 60.038 55.000 0.00 0.00 0.00 3.16
1085 1099 0.246086 CTTGAGCTGCGAGAGGAAGT 59.754 55.000 0.00 0.00 0.00 3.01
1087 1101 1.188219 ACCTTGAGCTGCGAGAGGAA 61.188 55.000 19.89 0.00 0.00 3.36
1119 1133 1.435408 GAAGATTCGAGGCAGCAGGC 61.435 60.000 0.00 0.00 43.74 4.85
1122 1136 0.176680 GGAGAAGATTCGAGGCAGCA 59.823 55.000 0.00 0.00 0.00 4.41
1123 1137 0.463620 AGGAGAAGATTCGAGGCAGC 59.536 55.000 0.00 0.00 0.00 5.25
1125 1139 2.093447 GGAAAGGAGAAGATTCGAGGCA 60.093 50.000 0.00 0.00 0.00 4.75
1126 1140 2.556257 GGAAAGGAGAAGATTCGAGGC 58.444 52.381 0.00 0.00 0.00 4.70
1129 1143 3.197983 GGAAGGGAAAGGAGAAGATTCGA 59.802 47.826 0.00 0.00 0.00 3.71
1131 1145 4.853468 AGGAAGGGAAAGGAGAAGATTC 57.147 45.455 0.00 0.00 0.00 2.52
1132 1146 6.218522 ACATAAGGAAGGGAAAGGAGAAGATT 59.781 38.462 0.00 0.00 0.00 2.40
1133 1147 5.733647 ACATAAGGAAGGGAAAGGAGAAGAT 59.266 40.000 0.00 0.00 0.00 2.40
1134 1148 5.101529 ACATAAGGAAGGGAAAGGAGAAGA 58.898 41.667 0.00 0.00 0.00 2.87
1135 1149 5.443230 ACATAAGGAAGGGAAAGGAGAAG 57.557 43.478 0.00 0.00 0.00 2.85
1136 1150 5.860648 AACATAAGGAAGGGAAAGGAGAA 57.139 39.130 0.00 0.00 0.00 2.87
1139 1153 5.860648 AGAAACATAAGGAAGGGAAAGGA 57.139 39.130 0.00 0.00 0.00 3.36
1152 1166 3.822167 GGTCCCGGTTGAAAGAAACATAA 59.178 43.478 0.00 0.00 0.00 1.90
1153 1167 3.414269 GGTCCCGGTTGAAAGAAACATA 58.586 45.455 0.00 0.00 0.00 2.29
1154 1168 2.235891 GGTCCCGGTTGAAAGAAACAT 58.764 47.619 0.00 0.00 0.00 2.71
1155 1169 1.682740 GGTCCCGGTTGAAAGAAACA 58.317 50.000 0.00 0.00 0.00 2.83
1156 1170 0.589708 CGGTCCCGGTTGAAAGAAAC 59.410 55.000 0.00 0.00 35.56 2.78
1157 1171 3.009612 CGGTCCCGGTTGAAAGAAA 57.990 52.632 0.00 0.00 35.56 2.52
1158 1172 4.783667 CGGTCCCGGTTGAAAGAA 57.216 55.556 0.00 0.00 35.56 2.52
1172 1186 8.718858 AAATAAAGATTTCGAACCCTCCCGGT 62.719 42.308 0.00 0.00 37.25 5.28
1178 1192 8.107729 ACCTAGAAAATAAAGATTTCGAACCCT 58.892 33.333 0.00 0.00 40.78 4.34
1209 1230 6.528423 CACGTGTCAATTCAACCAAAAAGTAA 59.472 34.615 7.58 0.00 0.00 2.24
1211 1232 4.862018 CACGTGTCAATTCAACCAAAAAGT 59.138 37.500 7.58 0.00 0.00 2.66
1214 1235 4.703645 TCACGTGTCAATTCAACCAAAA 57.296 36.364 16.51 0.00 0.00 2.44
1215 1236 4.667262 CTTCACGTGTCAATTCAACCAAA 58.333 39.130 16.51 0.00 0.00 3.28
1220 1241 3.003275 GGAAGCTTCACGTGTCAATTCAA 59.997 43.478 27.02 0.00 0.00 2.69
1231 2371 1.068954 GCAAAAGGAGGAAGCTTCACG 60.069 52.381 27.02 8.96 0.00 4.35
1255 2399 1.685820 GGGAACTTGGTGAGGAGGG 59.314 63.158 0.00 0.00 0.00 4.30
1283 2427 1.495584 GCGTCTGCTGAAACAACGGA 61.496 55.000 0.00 0.00 38.39 4.69
1292 2436 2.747460 GCATTGGGCGTCTGCTGA 60.747 61.111 0.00 0.00 42.25 4.26
1307 2451 2.515979 TTTGAGCTCCTCCACGGCA 61.516 57.895 12.15 0.00 0.00 5.69
1325 2469 5.238583 AGCAAAGTTATCTTACTCGCAAGT 58.761 37.500 0.00 0.00 39.66 3.16
1349 2493 3.251729 CCAATGTCTGACCAACTCAACAG 59.748 47.826 5.17 0.00 0.00 3.16
1351 2495 2.554032 CCCAATGTCTGACCAACTCAAC 59.446 50.000 5.17 0.00 0.00 3.18
1354 2498 1.073923 ACCCCAATGTCTGACCAACTC 59.926 52.381 5.17 0.00 0.00 3.01
1355 2499 1.149101 ACCCCAATGTCTGACCAACT 58.851 50.000 5.17 0.00 0.00 3.16
1356 2500 1.613437 CAACCCCAATGTCTGACCAAC 59.387 52.381 5.17 0.00 0.00 3.77
1359 2503 1.586154 CGCAACCCCAATGTCTGACC 61.586 60.000 5.17 0.00 0.00 4.02
1360 2504 0.605319 TCGCAACCCCAATGTCTGAC 60.605 55.000 0.00 0.00 0.00 3.51
1361 2505 0.327924 ATCGCAACCCCAATGTCTGA 59.672 50.000 0.00 0.00 0.00 3.27
1362 2506 0.452987 CATCGCAACCCCAATGTCTG 59.547 55.000 0.00 0.00 0.00 3.51
1364 2508 1.066002 CATCATCGCAACCCCAATGTC 59.934 52.381 0.00 0.00 0.00 3.06
1366 2510 0.249155 GCATCATCGCAACCCCAATG 60.249 55.000 0.00 0.00 0.00 2.82
1367 2511 0.396139 AGCATCATCGCAACCCCAAT 60.396 50.000 0.00 0.00 0.00 3.16
1368 2512 0.611618 AAGCATCATCGCAACCCCAA 60.612 50.000 0.00 0.00 0.00 4.12
1369 2513 0.611618 AAAGCATCATCGCAACCCCA 60.612 50.000 0.00 0.00 0.00 4.96
1370 2514 0.101219 GAAAGCATCATCGCAACCCC 59.899 55.000 0.00 0.00 0.00 4.95
1371 2515 1.098050 AGAAAGCATCATCGCAACCC 58.902 50.000 0.00 0.00 0.00 4.11
1378 2526 4.210120 GTCACACGGATAGAAAGCATCATC 59.790 45.833 0.00 0.00 0.00 2.92
1394 2549 2.279186 TGCTCACACCGTCACACG 60.279 61.111 0.00 0.00 42.11 4.49
1401 2556 4.624364 TGCACCCTGCTCACACCG 62.624 66.667 0.00 0.00 45.31 4.94
1402 2557 2.203337 TTGCACCCTGCTCACACC 60.203 61.111 0.00 0.00 45.31 4.16
1403 2558 1.526917 ACTTGCACCCTGCTCACAC 60.527 57.895 0.00 0.00 45.31 3.82
1406 2561 1.102809 CAACACTTGCACCCTGCTCA 61.103 55.000 0.00 0.00 45.31 4.26
1408 2563 1.829533 CCAACACTTGCACCCTGCT 60.830 57.895 0.00 0.00 45.31 4.24
1409 2564 2.730094 CCAACACTTGCACCCTGC 59.270 61.111 0.00 0.00 45.29 4.85
1410 2565 0.754957 TTCCCAACACTTGCACCCTG 60.755 55.000 0.00 0.00 0.00 4.45
1411 2566 0.188342 ATTCCCAACACTTGCACCCT 59.812 50.000 0.00 0.00 0.00 4.34
1412 2567 1.047801 AATTCCCAACACTTGCACCC 58.952 50.000 0.00 0.00 0.00 4.61
1413 2568 2.908688 AAATTCCCAACACTTGCACC 57.091 45.000 0.00 0.00 0.00 5.01
1414 2569 4.441792 AGAAAAATTCCCAACACTTGCAC 58.558 39.130 0.00 0.00 0.00 4.57
1415 2570 4.751767 AGAAAAATTCCCAACACTTGCA 57.248 36.364 0.00 0.00 0.00 4.08
1416 2571 4.273235 CCAAGAAAAATTCCCAACACTTGC 59.727 41.667 0.00 0.00 34.25 4.01
1417 2572 5.427378 ACCAAGAAAAATTCCCAACACTTG 58.573 37.500 0.00 0.00 35.01 3.16
1418 2573 5.692115 ACCAAGAAAAATTCCCAACACTT 57.308 34.783 0.00 0.00 0.00 3.16
1419 2574 5.304357 CCTACCAAGAAAAATTCCCAACACT 59.696 40.000 0.00 0.00 0.00 3.55
1420 2575 5.538118 CCTACCAAGAAAAATTCCCAACAC 58.462 41.667 0.00 0.00 0.00 3.32
1421 2576 4.039852 GCCTACCAAGAAAAATTCCCAACA 59.960 41.667 0.00 0.00 0.00 3.33
1422 2577 4.283467 AGCCTACCAAGAAAAATTCCCAAC 59.717 41.667 0.00 0.00 0.00 3.77
1423 2578 4.283212 CAGCCTACCAAGAAAAATTCCCAA 59.717 41.667 0.00 0.00 0.00 4.12
1426 2581 3.511540 AGCAGCCTACCAAGAAAAATTCC 59.488 43.478 0.00 0.00 0.00 3.01
1444 2601 6.706270 CCTGTACCTAAACCATAACATAGCAG 59.294 42.308 0.00 0.00 0.00 4.24
1446 2603 6.823497 TCCTGTACCTAAACCATAACATAGC 58.177 40.000 0.00 0.00 0.00 2.97
1448 2605 8.612486 TCTTCCTGTACCTAAACCATAACATA 57.388 34.615 0.00 0.00 0.00 2.29
1456 2613 6.940867 AGACAAAATCTTCCTGTACCTAAACC 59.059 38.462 0.00 0.00 31.62 3.27
1457 2614 7.981102 AGACAAAATCTTCCTGTACCTAAAC 57.019 36.000 0.00 0.00 31.62 2.01
1459 2695 8.195436 CGATAGACAAAATCTTCCTGTACCTAA 58.805 37.037 0.00 0.00 39.04 2.69
1462 2710 5.753921 CCGATAGACAAAATCTTCCTGTACC 59.246 44.000 0.00 0.00 39.04 3.34
1463 2711 6.255887 CACCGATAGACAAAATCTTCCTGTAC 59.744 42.308 0.00 0.00 39.04 2.90
1466 2714 5.419542 TCACCGATAGACAAAATCTTCCTG 58.580 41.667 0.00 0.00 39.04 3.86
1468 2716 5.277538 GCATCACCGATAGACAAAATCTTCC 60.278 44.000 0.00 0.00 39.04 3.46
1476 2724 2.677836 GCAAAGCATCACCGATAGACAA 59.322 45.455 0.00 0.00 39.76 3.18
1498 2746 5.012458 TCAACCAGAGACTGATCAACAAGAT 59.988 40.000 0.00 0.00 40.48 2.40
1501 2749 4.687901 TCAACCAGAGACTGATCAACAA 57.312 40.909 0.00 0.00 32.44 2.83
1507 2761 6.269538 ACAGCATATATCAACCAGAGACTGAT 59.730 38.462 0.00 0.00 32.44 2.90
1510 2764 5.221601 CCACAGCATATATCAACCAGAGACT 60.222 44.000 0.00 0.00 0.00 3.24
1513 2767 4.965814 ACCACAGCATATATCAACCAGAG 58.034 43.478 0.00 0.00 0.00 3.35
1515 2769 4.883585 ACAACCACAGCATATATCAACCAG 59.116 41.667 0.00 0.00 0.00 4.00
1526 2780 1.956477 GAAACCAGACAACCACAGCAT 59.044 47.619 0.00 0.00 0.00 3.79
1529 2783 2.643551 ACAGAAACCAGACAACCACAG 58.356 47.619 0.00 0.00 0.00 3.66
1537 2791 4.319177 AGACAGCATTACAGAAACCAGAC 58.681 43.478 0.00 0.00 0.00 3.51
1546 2800 4.934001 ACACAATCTGAGACAGCATTACAG 59.066 41.667 0.00 0.00 0.00 2.74
1552 2806 1.341209 ACGACACAATCTGAGACAGCA 59.659 47.619 0.00 0.00 0.00 4.41
1560 2814 4.439123 CGAGTCATATCACGACACAATCTG 59.561 45.833 0.00 0.00 35.77 2.90
1568 2822 2.784380 GCTGAACGAGTCATATCACGAC 59.216 50.000 0.00 0.00 35.07 4.34
1569 2823 2.422127 TGCTGAACGAGTCATATCACGA 59.578 45.455 0.00 0.00 35.07 4.35
1570 2824 2.797491 TGCTGAACGAGTCATATCACG 58.203 47.619 0.00 0.00 35.07 4.35
1571 2825 4.177026 AGTTGCTGAACGAGTCATATCAC 58.823 43.478 0.00 0.00 37.15 3.06
1572 2826 4.158579 AGAGTTGCTGAACGAGTCATATCA 59.841 41.667 0.00 0.00 37.15 2.15
1591 2864 1.277557 CAGCTGAGCCAAGGTTAGAGT 59.722 52.381 8.42 0.00 0.00 3.24
1593 2866 1.644509 TCAGCTGAGCCAAGGTTAGA 58.355 50.000 13.74 0.00 0.00 2.10
1594 2867 2.479566 TTCAGCTGAGCCAAGGTTAG 57.520 50.000 17.43 0.00 0.00 2.34
1596 2869 1.133668 AGTTTCAGCTGAGCCAAGGTT 60.134 47.619 17.43 0.00 0.00 3.50
1598 2871 1.268899 CAAGTTTCAGCTGAGCCAAGG 59.731 52.381 17.43 2.89 0.00 3.61
1601 2874 0.183492 ACCAAGTTTCAGCTGAGCCA 59.817 50.000 17.43 0.00 0.00 4.75
1602 2875 1.268079 GAACCAAGTTTCAGCTGAGCC 59.732 52.381 17.43 11.31 0.00 4.70
1603 2876 1.949525 TGAACCAAGTTTCAGCTGAGC 59.050 47.619 17.43 13.77 31.68 4.26
1604 2877 3.892918 CTGAACCAAGTTTCAGCTGAG 57.107 47.619 17.43 6.68 44.53 3.35
1610 2883 5.741011 ACTGAAGTACTGAACCAAGTTTCA 58.259 37.500 0.00 0.00 34.30 2.69
1611 2884 6.679327 AACTGAAGTACTGAACCAAGTTTC 57.321 37.500 0.00 0.00 0.00 2.78
1612 2885 7.827729 AGTTAACTGAAGTACTGAACCAAGTTT 59.172 33.333 7.48 0.00 31.56 2.66
1613 2886 7.280205 CAGTTAACTGAAGTACTGAACCAAGTT 59.720 37.037 28.17 3.61 46.59 2.66
1614 2887 6.761714 CAGTTAACTGAAGTACTGAACCAAGT 59.238 38.462 28.17 0.00 46.59 3.16
1615 2888 6.292919 GCAGTTAACTGAAGTACTGAACCAAG 60.293 42.308 34.43 6.54 46.59 3.61
1616 2889 5.526111 GCAGTTAACTGAAGTACTGAACCAA 59.474 40.000 34.43 0.00 46.59 3.67
1617 2890 5.054477 GCAGTTAACTGAAGTACTGAACCA 58.946 41.667 34.43 0.00 46.59 3.67
1618 2891 5.054477 TGCAGTTAACTGAAGTACTGAACC 58.946 41.667 34.43 15.12 46.59 3.62
1619 2892 6.598753 TTGCAGTTAACTGAAGTACTGAAC 57.401 37.500 34.43 15.57 46.59 3.18
1620 2893 6.426937 GGATTGCAGTTAACTGAAGTACTGAA 59.573 38.462 34.43 11.62 46.59 3.02
1621 2894 5.932303 GGATTGCAGTTAACTGAAGTACTGA 59.068 40.000 34.43 12.33 46.59 3.41
1622 2895 5.700832 TGGATTGCAGTTAACTGAAGTACTG 59.299 40.000 34.43 10.85 46.59 2.74
1623 2896 5.865085 TGGATTGCAGTTAACTGAAGTACT 58.135 37.500 34.43 13.39 46.59 2.73
1624 2897 6.149474 ACATGGATTGCAGTTAACTGAAGTAC 59.851 38.462 34.43 24.08 46.59 2.73
1627 2900 5.048504 ACACATGGATTGCAGTTAACTGAAG 60.049 40.000 34.43 16.43 46.59 3.02
1630 2903 4.771590 ACACATGGATTGCAGTTAACTG 57.228 40.909 27.85 27.85 46.40 3.16
1644 2919 9.561270 CTAGTATTACAGATCGATTACACATGG 57.439 37.037 0.00 0.00 0.00 3.66
1653 2928 9.217278 ACGTATCAACTAGTATTACAGATCGAT 57.783 33.333 0.00 0.00 0.00 3.59
1657 2932 9.745880 CCAAACGTATCAACTAGTATTACAGAT 57.254 33.333 0.00 0.00 0.00 2.90
1665 2940 7.385752 CCAAGAAACCAAACGTATCAACTAGTA 59.614 37.037 0.00 0.00 0.00 1.82
1666 2941 6.204108 CCAAGAAACCAAACGTATCAACTAGT 59.796 38.462 0.00 0.00 0.00 2.57
1667 2942 6.204108 ACCAAGAAACCAAACGTATCAACTAG 59.796 38.462 0.00 0.00 0.00 2.57
1668 2943 6.056884 ACCAAGAAACCAAACGTATCAACTA 58.943 36.000 0.00 0.00 0.00 2.24
1674 2949 9.154847 GTAGTATTACCAAGAAACCAAACGTAT 57.845 33.333 0.00 0.00 0.00 3.06
1691 2966 7.203910 CAGTCACATCCTCAAGGTAGTATTAC 58.796 42.308 0.00 0.00 36.34 1.89
1693 2968 5.129485 CCAGTCACATCCTCAAGGTAGTATT 59.871 44.000 0.00 0.00 36.34 1.89
1694 2969 4.651503 CCAGTCACATCCTCAAGGTAGTAT 59.348 45.833 0.00 0.00 36.34 2.12
1695 2970 4.023980 CCAGTCACATCCTCAAGGTAGTA 58.976 47.826 0.00 0.00 36.34 1.82
1696 2971 2.834549 CCAGTCACATCCTCAAGGTAGT 59.165 50.000 0.00 0.00 36.34 2.73
1700 2975 2.182827 TCTCCAGTCACATCCTCAAGG 58.817 52.381 0.00 0.00 0.00 3.61
1703 2978 3.395054 AGATCTCCAGTCACATCCTCA 57.605 47.619 0.00 0.00 0.00 3.86
1713 2988 2.781667 AGGCCCATAAAGATCTCCAGT 58.218 47.619 0.00 0.00 0.00 4.00
1715 2990 4.044308 TGTTAGGCCCATAAAGATCTCCA 58.956 43.478 0.00 0.00 0.00 3.86
1718 2993 4.141390 CCAGTGTTAGGCCCATAAAGATCT 60.141 45.833 0.00 0.00 0.00 2.75
1726 3001 1.492176 CAGATCCAGTGTTAGGCCCAT 59.508 52.381 0.00 0.00 0.00 4.00
1727 3002 0.911769 CAGATCCAGTGTTAGGCCCA 59.088 55.000 0.00 0.00 0.00 5.36
1728 3003 1.204146 TCAGATCCAGTGTTAGGCCC 58.796 55.000 0.00 0.00 0.00 5.80
1729 3004 3.567478 AATCAGATCCAGTGTTAGGCC 57.433 47.619 0.00 0.00 0.00 5.19
1738 3013 2.686915 GACCAAGGCAAATCAGATCCAG 59.313 50.000 0.00 0.00 0.00 3.86
1739 3014 2.041485 TGACCAAGGCAAATCAGATCCA 59.959 45.455 0.00 0.00 0.00 3.41
1740 3015 2.726821 TGACCAAGGCAAATCAGATCC 58.273 47.619 0.00 0.00 0.00 3.36
1741 3016 3.490419 GCATGACCAAGGCAAATCAGATC 60.490 47.826 0.00 0.00 0.00 2.75
1742 3017 2.429610 GCATGACCAAGGCAAATCAGAT 59.570 45.455 0.00 0.00 0.00 2.90
1743 3018 1.820519 GCATGACCAAGGCAAATCAGA 59.179 47.619 0.00 0.00 0.00 3.27
1752 3027 3.157087 AGGTAAAACTGCATGACCAAGG 58.843 45.455 0.00 0.00 32.28 3.61
1753 3028 4.853924 AAGGTAAAACTGCATGACCAAG 57.146 40.909 0.00 0.00 32.28 3.61
1765 3040 9.459640 GTCAATTGAAACTCCTAAAGGTAAAAC 57.540 33.333 10.35 0.00 36.34 2.43
1772 3047 6.884280 ACCAGTCAATTGAAACTCCTAAAG 57.116 37.500 10.35 0.00 0.00 1.85
1786 3061 2.512692 TATGGCAGCAACCAGTCAAT 57.487 45.000 3.94 0.00 44.71 2.57
1788 3063 1.281577 TGATATGGCAGCAACCAGTCA 59.718 47.619 3.94 7.59 44.71 3.41
1791 3066 4.395959 AAATTGATATGGCAGCAACCAG 57.604 40.909 3.94 0.00 44.71 4.00
1799 3074 9.299465 TCAAAGCATCTATAAATTGATATGGCA 57.701 29.630 0.00 0.00 0.00 4.92
1820 3099 7.262990 TCCTAGGATGGGATCATATTCAAAG 57.737 40.000 7.62 0.00 42.78 2.77
1833 3118 0.757188 AGCGTCAGTCCTAGGATGGG 60.757 60.000 16.27 7.83 38.63 4.00
1835 3120 2.292016 CACTAGCGTCAGTCCTAGGATG 59.708 54.545 16.27 13.92 36.27 3.51
1869 3161 6.992123 AGAGTTCACATTATCACAAGTTCACA 59.008 34.615 0.00 0.00 0.00 3.58
1870 3162 7.293745 CAGAGTTCACATTATCACAAGTTCAC 58.706 38.462 0.00 0.00 0.00 3.18
1871 3163 6.427853 CCAGAGTTCACATTATCACAAGTTCA 59.572 38.462 0.00 0.00 0.00 3.18
1872 3164 6.128172 CCCAGAGTTCACATTATCACAAGTTC 60.128 42.308 0.00 0.00 0.00 3.01
1873 3165 5.707298 CCCAGAGTTCACATTATCACAAGTT 59.293 40.000 0.00 0.00 0.00 2.66
1874 3166 5.013079 TCCCAGAGTTCACATTATCACAAGT 59.987 40.000 0.00 0.00 0.00 3.16
1875 3167 5.491070 TCCCAGAGTTCACATTATCACAAG 58.509 41.667 0.00 0.00 0.00 3.16
1876 3168 5.497464 TCCCAGAGTTCACATTATCACAA 57.503 39.130 0.00 0.00 0.00 3.33
1877 3169 5.497464 TTCCCAGAGTTCACATTATCACA 57.503 39.130 0.00 0.00 0.00 3.58
1902 3194 4.261197 GGTCAAGTCGAGAAAGCACAATTT 60.261 41.667 0.00 0.00 0.00 1.82
1903 3195 3.251004 GGTCAAGTCGAGAAAGCACAATT 59.749 43.478 0.00 0.00 0.00 2.32
1908 3200 1.335964 CGAGGTCAAGTCGAGAAAGCA 60.336 52.381 0.00 0.00 39.92 3.91
1909 3201 1.341606 CGAGGTCAAGTCGAGAAAGC 58.658 55.000 0.00 0.00 39.92 3.51
1914 3206 0.882474 AAGTCCGAGGTCAAGTCGAG 59.118 55.000 0.00 0.00 39.92 4.04
1928 3222 3.993920 ACAAACATCCAATGCAAAGTCC 58.006 40.909 0.00 0.00 0.00 3.85
1931 3225 7.655236 TCAAATACAAACATCCAATGCAAAG 57.345 32.000 0.00 0.00 0.00 2.77
1932 3226 7.876582 TCATCAAATACAAACATCCAATGCAAA 59.123 29.630 0.00 0.00 0.00 3.68
1933 3227 7.384477 TCATCAAATACAAACATCCAATGCAA 58.616 30.769 0.00 0.00 0.00 4.08
1987 3283 6.035975 CGACATAAGAGTTCATGCACAACATA 59.964 38.462 11.87 4.01 36.64 2.29
1988 3284 5.163824 CGACATAAGAGTTCATGCACAACAT 60.164 40.000 11.87 2.25 40.66 2.71
1992 3288 4.186856 TCGACATAAGAGTTCATGCACA 57.813 40.909 0.00 0.00 0.00 4.57
1995 3291 5.496387 CACAATCGACATAAGAGTTCATGC 58.504 41.667 0.00 0.00 0.00 4.06
2007 3341 3.244422 ACACAGGTTACCACAATCGACAT 60.244 43.478 3.51 0.00 0.00 3.06
2018 3353 4.825085 TCAAAAATCAGGACACAGGTTACC 59.175 41.667 0.00 0.00 0.00 2.85
2026 3361 6.421801 CACATTTTCCTCAAAAATCAGGACAC 59.578 38.462 0.00 0.00 44.04 3.67
2029 3364 6.098124 ACACACATTTTCCTCAAAAATCAGGA 59.902 34.615 0.00 0.00 44.04 3.86
2034 3369 8.641541 ACATAGACACACATTTTCCTCAAAAAT 58.358 29.630 0.00 0.00 46.23 1.82
2077 3420 7.633018 TGGAAGGCCAGAGTATAATTCTAAT 57.367 36.000 5.01 0.00 39.92 1.73
2084 3427 6.562608 AGGATAATTGGAAGGCCAGAGTATAA 59.437 38.462 5.01 0.00 46.91 0.98
2088 3433 3.126453 AGGATAATTGGAAGGCCAGAGT 58.874 45.455 5.01 0.00 46.91 3.24
2095 3440 5.951747 TGTCAAGGAAAGGATAATTGGAAGG 59.048 40.000 0.00 0.00 0.00 3.46
2101 3446 5.819991 TGCTCTGTCAAGGAAAGGATAATT 58.180 37.500 0.00 0.00 0.00 1.40
2105 3450 3.073650 AGTTGCTCTGTCAAGGAAAGGAT 59.926 43.478 0.00 0.00 0.00 3.24
2106 3451 2.439507 AGTTGCTCTGTCAAGGAAAGGA 59.560 45.455 0.00 0.00 0.00 3.36
2107 3452 2.856222 AGTTGCTCTGTCAAGGAAAGG 58.144 47.619 0.00 0.00 0.00 3.11
2108 3453 4.636249 AGTAGTTGCTCTGTCAAGGAAAG 58.364 43.478 0.00 0.00 0.00 2.62
2109 3454 4.689612 AGTAGTTGCTCTGTCAAGGAAA 57.310 40.909 0.00 0.00 0.00 3.13
2110 3455 5.801531 TTAGTAGTTGCTCTGTCAAGGAA 57.198 39.130 0.00 0.00 0.00 3.36
2116 3461 7.761704 TCAGATTGATTTAGTAGTTGCTCTGTC 59.238 37.037 0.00 0.00 0.00 3.51
2118 3463 8.484641 TTCAGATTGATTTAGTAGTTGCTCTG 57.515 34.615 0.00 0.00 0.00 3.35
2125 3470 9.793259 TGAAAGGTTTCAGATTGATTTAGTAGT 57.207 29.630 0.87 0.00 41.88 2.73
2146 3491 4.272489 TGCTCATAAATGTCCCCTGAAAG 58.728 43.478 0.00 0.00 0.00 2.62
2157 3502 6.132791 AGAAGAACTGCATGCTCATAAATG 57.867 37.500 20.33 1.67 0.00 2.32
2169 3514 3.541996 TTCACACTGAGAAGAACTGCA 57.458 42.857 0.00 0.00 0.00 4.41
2176 3521 6.481313 TGATCTTCTGTTTTCACACTGAGAAG 59.519 38.462 0.00 0.00 34.78 2.85
2179 3524 6.481313 TCTTGATCTTCTGTTTTCACACTGAG 59.519 38.462 0.00 0.00 0.00 3.35
2181 3526 6.609237 TCTTGATCTTCTGTTTTCACACTG 57.391 37.500 0.00 0.00 0.00 3.66
2192 3537 6.752351 CCTTTCAAATGCATCTTGATCTTCTG 59.248 38.462 18.60 9.68 32.98 3.02
2193 3538 6.127423 CCCTTTCAAATGCATCTTGATCTTCT 60.127 38.462 18.60 0.00 32.98 2.85
2199 3544 4.410099 AGTCCCTTTCAAATGCATCTTGA 58.590 39.130 15.74 15.74 0.00 3.02
2229 3574 4.576463 GTGTCCATGTAATAAGGCTTGAGG 59.424 45.833 10.69 1.42 0.00 3.86
2238 3583 8.871629 AAACTAACCATGTGTCCATGTAATAA 57.128 30.769 2.38 0.00 45.83 1.40
2263 3608 6.463995 AACAATTGCAAAGTGGTAAGAAGA 57.536 33.333 1.71 0.00 41.73 2.87
2267 3612 6.980397 AGAGAAAACAATTGCAAAGTGGTAAG 59.020 34.615 1.71 0.00 43.37 2.34
2281 3636 6.477688 CACAATGCAAAGACAGAGAAAACAAT 59.522 34.615 0.00 0.00 0.00 2.71
2325 3680 6.808704 TGAAAGAGAACAGAGAACGATACATG 59.191 38.462 0.00 0.00 0.00 3.21
2432 3797 7.233962 CCCATGATAATCCAATGGAAGATGAAA 59.766 37.037 5.89 0.00 34.34 2.69
2575 3967 0.971386 TCGACTACCCAACTGAACCC 59.029 55.000 0.00 0.00 0.00 4.11
2611 4004 9.547753 AATCTACATGTATAACTTGGCTTACAG 57.452 33.333 5.91 0.00 0.00 2.74
2692 4110 4.573900 ACACAAAACAATTGCCAGTTTGA 58.426 34.783 21.61 0.00 37.94 2.69
3062 6228 1.491668 TGTAAGCGCCCTCCATAAGA 58.508 50.000 2.29 0.00 0.00 2.10
3077 6243 1.068417 ACTCAGCACGCGGTTGTAA 59.932 52.632 12.47 0.00 0.00 2.41
3099 6265 2.281692 ATGCGGCACAGCTTGTCA 60.282 55.556 4.03 0.00 38.13 3.58
3125 6291 5.304614 GGCTAGAAGGTCCATGAAGTATACA 59.695 44.000 5.50 0.00 0.00 2.29
3150 6316 5.187381 AGCCCACTTACCTAACTACTCTTTC 59.813 44.000 0.00 0.00 0.00 2.62
3173 6339 0.736325 CGAAGGGGTAGCGACACAAG 60.736 60.000 0.44 0.00 0.00 3.16
3509 7027 2.239654 TGGCTAGAACTCCCCATCTTTG 59.760 50.000 0.00 0.00 0.00 2.77
3523 7041 1.951209 TGATGAACTGGGTGGCTAGA 58.049 50.000 0.00 0.00 0.00 2.43
3599 7123 4.514401 AGTAAAGTATGGTAACCAGCAGC 58.486 43.478 0.00 0.00 36.75 5.25
3640 7164 0.823356 AAATAGATGGGCGCGGCAAT 60.823 50.000 34.30 29.61 0.00 3.56
3737 7261 7.696992 TCTCCCTTTATCAATTACCAACAAC 57.303 36.000 0.00 0.00 0.00 3.32
3749 7273 7.162761 TCAAATGTAACGTTCTCCCTTTATCA 58.837 34.615 2.82 0.00 0.00 2.15
3985 7509 3.555377 CCGTTACTGGGAACATGTGTACA 60.555 47.826 0.00 0.00 41.51 2.90
4131 7655 9.173939 CATAGTTCAATCGCTTTGGATTATTTC 57.826 33.333 0.00 0.00 34.96 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.