Multiple sequence alignment - TraesCS3B01G441300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G441300 chr3B 100.000 4506 0 0 1 4506 680734694 680730189 0.000000e+00 8322
1 TraesCS3B01G441300 chr3B 92.406 2041 113 21 1622 3633 680677203 680675176 0.000000e+00 2872
2 TraesCS3B01G441300 chr3B 90.423 1984 124 27 1588 3531 680478297 680476340 0.000000e+00 2551
3 TraesCS3B01G441300 chr3B 87.719 228 18 4 270 496 680783117 680782899 1.610000e-64 257
4 TraesCS3B01G441300 chr3B 86.522 230 19 5 3852 4079 228805620 228805839 4.500000e-60 243
5 TraesCS3B01G441300 chr3B 82.374 278 36 7 4077 4352 51025961 51026227 3.510000e-56 230
6 TraesCS3B01G441300 chr3B 83.562 219 35 1 3862 4079 28000077 28000295 2.130000e-48 204
7 TraesCS3B01G441300 chr3B 86.842 152 8 6 571 710 680782708 680782557 4.670000e-35 159
8 TraesCS3B01G441300 chr3B 89.381 113 11 1 751 863 680782549 680782438 1.690000e-29 141
9 TraesCS3B01G441300 chr3A 90.850 2940 159 52 750 3633 651647642 651650527 0.000000e+00 3838
10 TraesCS3B01G441300 chr3A 92.443 2051 110 23 1588 3631 651961948 651963960 0.000000e+00 2887
11 TraesCS3B01G441300 chr3A 91.093 1931 113 29 1610 3531 651996065 651997945 0.000000e+00 2558
12 TraesCS3B01G441300 chr3A 93.075 491 18 7 225 710 651647155 651647634 0.000000e+00 704
13 TraesCS3B01G441300 chr3A 79.960 504 75 13 3852 4349 144444436 144444919 9.280000e-92 348
14 TraesCS3B01G441300 chr3D 93.681 2073 94 18 1587 3633 516670973 516673034 0.000000e+00 3068
15 TraesCS3B01G441300 chr3D 95.873 848 34 1 2685 3531 516856631 516857478 0.000000e+00 1371
16 TraesCS3B01G441300 chr3D 89.792 1058 71 22 1586 2632 516855416 516856447 0.000000e+00 1321
17 TraesCS3B01G441300 chr3D 89.329 834 39 24 748 1555 516670166 516670975 0.000000e+00 1002
18 TraesCS3B01G441300 chr3D 87.008 508 42 16 227 710 516669654 516670161 6.590000e-153 551
19 TraesCS3B01G441300 chr3D 83.877 521 63 13 3852 4355 11794670 11794154 1.130000e-130 477
20 TraesCS3B01G441300 chr7D 89.288 1699 145 11 1838 3531 502231420 502233086 0.000000e+00 2095
21 TraesCS3B01G441300 chr7D 82.870 432 53 9 4077 4506 24160459 24160871 7.120000e-98 368
22 TraesCS3B01G441300 chr7D 88.953 172 16 2 3910 4079 136941664 136941494 4.570000e-50 209
23 TraesCS3B01G441300 chr1A 84.273 763 115 4 2730 3488 460281706 460282467 0.000000e+00 739
24 TraesCS3B01G441300 chr1A 87.379 206 26 0 2414 2619 460281484 460281689 2.100000e-58 237
25 TraesCS3B01G441300 chr5D 82.331 532 92 2 2084 2614 192537909 192538439 1.140000e-125 460
26 TraesCS3B01G441300 chr5D 85.302 381 34 14 3858 4218 361602607 361602985 1.530000e-99 374
27 TraesCS3B01G441300 chr5A 79.811 634 83 24 3904 4506 597280612 597281231 1.940000e-113 420
28 TraesCS3B01G441300 chr4B 84.019 413 61 4 4084 4496 413505377 413505784 4.230000e-105 392
29 TraesCS3B01G441300 chr4A 84.034 357 52 4 4150 4506 705884904 705884553 5.580000e-89 339
30 TraesCS3B01G441300 chr4A 84.034 357 52 4 4150 4506 707398373 707398022 5.580000e-89 339
31 TraesCS3B01G441300 chr4A 84.416 231 33 3 3852 4079 690126819 690126589 1.630000e-54 224
32 TraesCS3B01G441300 chr6A 87.900 281 34 0 4078 4358 531453427 531453147 9.340000e-87 331
33 TraesCS3B01G441300 chr7A 81.159 414 71 5 4084 4496 3404173 3403766 4.350000e-85 326
34 TraesCS3B01G441300 chr7B 81.010 416 71 7 4082 4496 534058603 534059011 1.560000e-84 324
35 TraesCS3B01G441300 chr7B 80.208 384 69 5 4082 4465 603266436 603266060 9.540000e-72 281
36 TraesCS3B01G441300 chr7B 84.956 226 33 1 3852 4076 527874461 527874686 1.260000e-55 228
37 TraesCS3B01G441300 chr6D 87.615 218 23 3 3863 4079 386403769 386403555 2.690000e-62 250
38 TraesCS3B01G441300 chr1D 86.893 206 27 0 2414 2619 360467733 360467938 9.750000e-57 231
39 TraesCS3B01G441300 chr2D 85.268 224 30 3 3858 4079 301528884 301528662 1.260000e-55 228
40 TraesCS3B01G441300 chr2A 75.196 383 71 14 4114 4481 1265062 1264689 4.670000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G441300 chr3B 680730189 680734694 4505 True 8322.000000 8322 100.0000 1 4506 1 chr3B.!!$R3 4505
1 TraesCS3B01G441300 chr3B 680675176 680677203 2027 True 2872.000000 2872 92.4060 1622 3633 1 chr3B.!!$R2 2011
2 TraesCS3B01G441300 chr3B 680476340 680478297 1957 True 2551.000000 2551 90.4230 1588 3531 1 chr3B.!!$R1 1943
3 TraesCS3B01G441300 chr3A 651961948 651963960 2012 False 2887.000000 2887 92.4430 1588 3631 1 chr3A.!!$F2 2043
4 TraesCS3B01G441300 chr3A 651996065 651997945 1880 False 2558.000000 2558 91.0930 1610 3531 1 chr3A.!!$F3 1921
5 TraesCS3B01G441300 chr3A 651647155 651650527 3372 False 2271.000000 3838 91.9625 225 3633 2 chr3A.!!$F4 3408
6 TraesCS3B01G441300 chr3D 516669654 516673034 3380 False 1540.333333 3068 90.0060 227 3633 3 chr3D.!!$F1 3406
7 TraesCS3B01G441300 chr3D 516855416 516857478 2062 False 1346.000000 1371 92.8325 1586 3531 2 chr3D.!!$F2 1945
8 TraesCS3B01G441300 chr3D 11794154 11794670 516 True 477.000000 477 83.8770 3852 4355 1 chr3D.!!$R1 503
9 TraesCS3B01G441300 chr7D 502231420 502233086 1666 False 2095.000000 2095 89.2880 1838 3531 1 chr7D.!!$F2 1693
10 TraesCS3B01G441300 chr1A 460281484 460282467 983 False 488.000000 739 85.8260 2414 3488 2 chr1A.!!$F1 1074
11 TraesCS3B01G441300 chr5D 192537909 192538439 530 False 460.000000 460 82.3310 2084 2614 1 chr5D.!!$F1 530
12 TraesCS3B01G441300 chr5A 597280612 597281231 619 False 420.000000 420 79.8110 3904 4506 1 chr5A.!!$F1 602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
695 729 0.093026 GAAATGTTCGTCGCCTGTCG 59.907 55.0 0.0 0.0 40.15 4.35 F
2055 2239 0.038159 GTTGGTCCCTCACTCTGACG 60.038 60.0 0.0 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2400 2588 0.464916 TGATGGCGAGCATGCTGATT 60.465 50.0 28.27 0.0 34.52 2.57 R
3912 4269 0.032130 GAGTGCTCGTTCACTGTCCA 59.968 55.0 14.92 0.0 46.40 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.432982 TCAATAACATGGGAAAATATTTAGGCT 57.567 29.630 0.01 0.00 0.00 4.58
31 32 7.494922 AACATGGGAAAATATTTAGGCTTGT 57.505 32.000 0.01 1.31 0.00 3.16
32 33 8.602472 AACATGGGAAAATATTTAGGCTTGTA 57.398 30.769 0.01 0.00 0.00 2.41
33 34 8.782137 ACATGGGAAAATATTTAGGCTTGTAT 57.218 30.769 0.01 0.00 0.00 2.29
34 35 9.875708 ACATGGGAAAATATTTAGGCTTGTATA 57.124 29.630 0.01 0.00 0.00 1.47
44 45 9.890915 ATATTTAGGCTTGTATAATTTTCCCCA 57.109 29.630 0.00 0.00 0.00 4.96
45 46 8.616799 ATTTAGGCTTGTATAATTTTCCCCAA 57.383 30.769 0.00 0.00 0.00 4.12
46 47 8.437274 TTTAGGCTTGTATAATTTTCCCCAAA 57.563 30.769 0.00 0.00 0.00 3.28
47 48 6.943899 AGGCTTGTATAATTTTCCCCAAAA 57.056 33.333 0.00 0.00 35.92 2.44
48 49 6.707290 AGGCTTGTATAATTTTCCCCAAAAC 58.293 36.000 0.00 0.00 34.24 2.43
49 50 6.271159 AGGCTTGTATAATTTTCCCCAAAACA 59.729 34.615 0.00 0.00 34.24 2.83
50 51 7.037658 AGGCTTGTATAATTTTCCCCAAAACAT 60.038 33.333 0.00 0.00 34.24 2.71
51 52 7.609918 GGCTTGTATAATTTTCCCCAAAACATT 59.390 33.333 0.00 0.00 34.24 2.71
52 53 8.664798 GCTTGTATAATTTTCCCCAAAACATTC 58.335 33.333 0.00 0.00 34.24 2.67
53 54 9.161629 CTTGTATAATTTTCCCCAAAACATTCC 57.838 33.333 0.00 0.00 34.24 3.01
54 55 8.442660 TGTATAATTTTCCCCAAAACATTCCT 57.557 30.769 0.00 0.00 34.24 3.36
55 56 8.885346 TGTATAATTTTCCCCAAAACATTCCTT 58.115 29.630 0.00 0.00 34.24 3.36
56 57 9.161629 GTATAATTTTCCCCAAAACATTCCTTG 57.838 33.333 0.00 0.00 34.24 3.61
57 58 4.429854 TTTTCCCCAAAACATTCCTTGG 57.570 40.909 0.00 0.00 41.58 3.61
58 59 1.347062 TCCCCAAAACATTCCTTGGC 58.653 50.000 0.00 0.00 40.74 4.52
59 60 1.055040 CCCCAAAACATTCCTTGGCA 58.945 50.000 0.00 0.00 40.74 4.92
60 61 1.629861 CCCCAAAACATTCCTTGGCAT 59.370 47.619 0.00 0.00 40.74 4.40
61 62 2.616001 CCCCAAAACATTCCTTGGCATG 60.616 50.000 0.00 0.00 40.74 4.06
62 63 2.038820 CCCAAAACATTCCTTGGCATGT 59.961 45.455 0.00 0.00 40.74 3.21
63 64 3.068560 CCAAAACATTCCTTGGCATGTG 58.931 45.455 5.75 0.00 35.97 3.21
64 65 3.244146 CCAAAACATTCCTTGGCATGTGA 60.244 43.478 5.75 0.00 35.97 3.58
65 66 4.563993 CCAAAACATTCCTTGGCATGTGAT 60.564 41.667 5.75 0.00 35.97 3.06
66 67 4.460948 AAACATTCCTTGGCATGTGATC 57.539 40.909 5.75 0.00 33.76 2.92
67 68 2.381911 ACATTCCTTGGCATGTGATCC 58.618 47.619 4.24 0.00 32.19 3.36
68 69 2.024655 ACATTCCTTGGCATGTGATCCT 60.025 45.455 4.24 0.00 32.19 3.24
69 70 2.133281 TTCCTTGGCATGTGATCCTG 57.867 50.000 0.00 0.00 0.00 3.86
70 71 0.994247 TCCTTGGCATGTGATCCTGT 59.006 50.000 0.00 0.00 0.00 4.00
71 72 1.100510 CCTTGGCATGTGATCCTGTG 58.899 55.000 0.00 0.00 0.00 3.66
72 73 1.340308 CCTTGGCATGTGATCCTGTGA 60.340 52.381 0.00 0.00 0.00 3.58
73 74 2.651455 CTTGGCATGTGATCCTGTGAT 58.349 47.619 0.00 0.00 0.00 3.06
74 75 2.047002 TGGCATGTGATCCTGTGATG 57.953 50.000 0.00 0.00 0.00 3.07
75 76 0.666913 GGCATGTGATCCTGTGATGC 59.333 55.000 0.00 0.00 38.96 3.91
76 77 1.385528 GCATGTGATCCTGTGATGCA 58.614 50.000 0.00 0.00 39.39 3.96
77 78 1.065102 GCATGTGATCCTGTGATGCAC 59.935 52.381 0.00 0.00 39.39 4.57
78 79 2.361789 CATGTGATCCTGTGATGCACA 58.638 47.619 0.00 0.00 42.45 4.57
87 88 3.762293 TGATGCACACACCCAAGC 58.238 55.556 0.00 0.00 0.00 4.01
88 89 1.151221 TGATGCACACACCCAAGCT 59.849 52.632 0.00 0.00 0.00 3.74
89 90 0.467844 TGATGCACACACCCAAGCTT 60.468 50.000 0.00 0.00 0.00 3.74
90 91 1.202867 TGATGCACACACCCAAGCTTA 60.203 47.619 0.00 0.00 0.00 3.09
91 92 1.200020 GATGCACACACCCAAGCTTAC 59.800 52.381 0.00 0.00 0.00 2.34
92 93 0.106967 TGCACACACCCAAGCTTACA 60.107 50.000 0.00 0.00 0.00 2.41
93 94 1.028905 GCACACACCCAAGCTTACAA 58.971 50.000 0.00 0.00 0.00 2.41
94 95 1.407258 GCACACACCCAAGCTTACAAA 59.593 47.619 0.00 0.00 0.00 2.83
95 96 2.035832 GCACACACCCAAGCTTACAAAT 59.964 45.455 0.00 0.00 0.00 2.32
96 97 3.254657 GCACACACCCAAGCTTACAAATA 59.745 43.478 0.00 0.00 0.00 1.40
97 98 4.261825 GCACACACCCAAGCTTACAAATAA 60.262 41.667 0.00 0.00 0.00 1.40
98 99 5.737635 GCACACACCCAAGCTTACAAATAAA 60.738 40.000 0.00 0.00 0.00 1.40
99 100 6.454795 CACACACCCAAGCTTACAAATAAAT 58.545 36.000 0.00 0.00 0.00 1.40
100 101 6.586082 CACACACCCAAGCTTACAAATAAATC 59.414 38.462 0.00 0.00 0.00 2.17
101 102 6.266558 ACACACCCAAGCTTACAAATAAATCA 59.733 34.615 0.00 0.00 0.00 2.57
102 103 6.808212 CACACCCAAGCTTACAAATAAATCAG 59.192 38.462 0.00 0.00 0.00 2.90
103 104 6.719370 ACACCCAAGCTTACAAATAAATCAGA 59.281 34.615 0.00 0.00 0.00 3.27
104 105 7.232534 ACACCCAAGCTTACAAATAAATCAGAA 59.767 33.333 0.00 0.00 0.00 3.02
105 106 7.542130 CACCCAAGCTTACAAATAAATCAGAAC 59.458 37.037 0.00 0.00 0.00 3.01
106 107 6.747280 CCCAAGCTTACAAATAAATCAGAACG 59.253 38.462 0.00 0.00 0.00 3.95
107 108 7.361713 CCCAAGCTTACAAATAAATCAGAACGA 60.362 37.037 0.00 0.00 0.00 3.85
108 109 8.020819 CCAAGCTTACAAATAAATCAGAACGAA 58.979 33.333 0.00 0.00 0.00 3.85
109 110 9.055248 CAAGCTTACAAATAAATCAGAACGAAG 57.945 33.333 0.00 0.00 0.00 3.79
110 111 7.752695 AGCTTACAAATAAATCAGAACGAAGG 58.247 34.615 0.00 0.00 0.00 3.46
111 112 7.390718 AGCTTACAAATAAATCAGAACGAAGGT 59.609 33.333 0.00 0.00 0.00 3.50
112 113 8.021396 GCTTACAAATAAATCAGAACGAAGGTT 58.979 33.333 0.00 0.00 39.63 3.50
115 116 7.527457 ACAAATAAATCAGAACGAAGGTTAGC 58.473 34.615 0.00 0.00 36.24 3.09
116 117 7.390718 ACAAATAAATCAGAACGAAGGTTAGCT 59.609 33.333 0.00 0.00 36.24 3.32
117 118 7.923414 AATAAATCAGAACGAAGGTTAGCTT 57.077 32.000 0.00 0.00 36.24 3.74
118 119 5.613358 AAATCAGAACGAAGGTTAGCTTG 57.387 39.130 0.00 0.00 36.24 4.01
119 120 2.413837 TCAGAACGAAGGTTAGCTTGC 58.586 47.619 0.00 0.00 36.24 4.01
120 121 1.464997 CAGAACGAAGGTTAGCTTGCC 59.535 52.381 0.00 0.00 36.24 4.52
121 122 1.348036 AGAACGAAGGTTAGCTTGCCT 59.652 47.619 0.00 0.00 36.24 4.75
122 123 2.565834 AGAACGAAGGTTAGCTTGCCTA 59.434 45.455 0.00 0.00 36.24 3.93
123 124 2.674796 ACGAAGGTTAGCTTGCCTAG 57.325 50.000 0.00 8.86 34.15 3.02
124 125 4.772009 GAACGAAGGTTAGCTTGCCTAGC 61.772 52.174 0.00 0.00 42.79 3.42
132 133 1.144057 GCTTGCCTAGCCTTCGCTA 59.856 57.895 0.00 0.00 46.08 4.26
138 139 4.779113 TAGCCTTCGCTAGTGGGT 57.221 55.556 2.90 3.64 46.08 4.51
139 140 2.986492 TAGCCTTCGCTAGTGGGTT 58.014 52.632 2.90 0.00 46.08 4.11
140 141 1.272807 TAGCCTTCGCTAGTGGGTTT 58.727 50.000 2.90 0.00 46.08 3.27
141 142 0.400594 AGCCTTCGCTAGTGGGTTTT 59.599 50.000 2.90 0.00 46.08 2.43
142 143 1.626825 AGCCTTCGCTAGTGGGTTTTA 59.373 47.619 2.90 0.00 46.08 1.52
143 144 2.039348 AGCCTTCGCTAGTGGGTTTTAA 59.961 45.455 2.90 0.00 46.08 1.52
144 145 2.815503 GCCTTCGCTAGTGGGTTTTAAA 59.184 45.455 2.90 0.00 0.00 1.52
145 146 3.253921 GCCTTCGCTAGTGGGTTTTAAAA 59.746 43.478 2.90 0.00 0.00 1.52
146 147 4.261698 GCCTTCGCTAGTGGGTTTTAAAAA 60.262 41.667 1.31 0.00 0.00 1.94
147 148 5.566032 GCCTTCGCTAGTGGGTTTTAAAAAT 60.566 40.000 1.31 0.00 0.00 1.82
148 149 6.349528 GCCTTCGCTAGTGGGTTTTAAAAATA 60.350 38.462 1.31 0.00 0.00 1.40
149 150 7.025365 CCTTCGCTAGTGGGTTTTAAAAATAC 58.975 38.462 1.31 2.70 0.00 1.89
150 151 7.308710 CCTTCGCTAGTGGGTTTTAAAAATACA 60.309 37.037 1.31 0.00 0.00 2.29
151 152 7.507733 TCGCTAGTGGGTTTTAAAAATACAA 57.492 32.000 1.31 0.00 0.00 2.41
152 153 7.938715 TCGCTAGTGGGTTTTAAAAATACAAA 58.061 30.769 1.31 0.00 0.00 2.83
153 154 7.861872 TCGCTAGTGGGTTTTAAAAATACAAAC 59.138 33.333 1.31 0.27 0.00 2.93
154 155 7.863877 CGCTAGTGGGTTTTAAAAATACAAACT 59.136 33.333 1.31 6.74 32.09 2.66
155 156 9.188588 GCTAGTGGGTTTTAAAAATACAAACTC 57.811 33.333 1.31 0.00 32.39 3.01
159 160 9.172820 GTGGGTTTTAAAAATACAAACTCTACG 57.827 33.333 1.31 0.00 32.88 3.51
160 161 9.118300 TGGGTTTTAAAAATACAAACTCTACGA 57.882 29.630 1.31 0.00 32.88 3.43
168 169 7.521509 AAATACAAACTCTACGATGTACAGC 57.478 36.000 0.00 0.00 31.65 4.40
169 170 3.846360 ACAAACTCTACGATGTACAGCC 58.154 45.455 5.36 0.00 0.00 4.85
170 171 2.846039 AACTCTACGATGTACAGCCG 57.154 50.000 15.97 15.97 0.00 5.52
171 172 2.034104 ACTCTACGATGTACAGCCGA 57.966 50.000 22.09 9.15 0.00 5.54
172 173 2.573369 ACTCTACGATGTACAGCCGAT 58.427 47.619 22.09 11.73 0.00 4.18
173 174 2.548904 ACTCTACGATGTACAGCCGATC 59.451 50.000 22.09 5.54 0.00 3.69
174 175 2.548480 CTCTACGATGTACAGCCGATCA 59.452 50.000 22.09 9.41 0.00 2.92
175 176 2.289820 TCTACGATGTACAGCCGATCAC 59.710 50.000 22.09 0.00 0.00 3.06
176 177 0.102481 ACGATGTACAGCCGATCACC 59.898 55.000 22.09 0.00 0.00 4.02
177 178 0.934901 CGATGTACAGCCGATCACCG 60.935 60.000 13.26 0.00 38.18 4.94
178 179 0.384309 GATGTACAGCCGATCACCGA 59.616 55.000 0.00 0.00 41.76 4.69
179 180 0.821517 ATGTACAGCCGATCACCGAA 59.178 50.000 0.33 0.00 41.76 4.30
180 181 0.108992 TGTACAGCCGATCACCGAAC 60.109 55.000 0.00 0.00 41.76 3.95
181 182 0.172803 GTACAGCCGATCACCGAACT 59.827 55.000 0.00 0.00 41.76 3.01
182 183 1.402968 GTACAGCCGATCACCGAACTA 59.597 52.381 0.00 0.00 41.76 2.24
183 184 1.112113 ACAGCCGATCACCGAACTAT 58.888 50.000 0.00 0.00 41.76 2.12
184 185 2.304092 ACAGCCGATCACCGAACTATA 58.696 47.619 0.00 0.00 41.76 1.31
185 186 2.293677 ACAGCCGATCACCGAACTATAG 59.706 50.000 0.00 0.00 41.76 1.31
186 187 2.293677 CAGCCGATCACCGAACTATAGT 59.706 50.000 0.00 0.00 41.76 2.12
187 188 2.957006 AGCCGATCACCGAACTATAGTT 59.043 45.455 18.05 18.05 41.76 2.24
188 189 4.023450 CAGCCGATCACCGAACTATAGTTA 60.023 45.833 18.03 2.83 41.76 2.24
189 190 4.581824 AGCCGATCACCGAACTATAGTTAA 59.418 41.667 18.03 2.90 41.76 2.01
190 191 5.243283 AGCCGATCACCGAACTATAGTTAAT 59.757 40.000 18.03 7.24 41.76 1.40
191 192 5.924825 GCCGATCACCGAACTATAGTTAATT 59.075 40.000 18.03 2.62 41.76 1.40
192 193 6.423001 GCCGATCACCGAACTATAGTTAATTT 59.577 38.462 18.03 0.00 41.76 1.82
193 194 7.568861 GCCGATCACCGAACTATAGTTAATTTG 60.569 40.741 18.03 12.39 41.76 2.32
194 195 7.095774 CCGATCACCGAACTATAGTTAATTTGG 60.096 40.741 18.03 15.62 41.76 3.28
195 196 6.913873 TCACCGAACTATAGTTAATTTGGC 57.086 37.500 18.03 3.42 38.56 4.52
196 197 5.818857 TCACCGAACTATAGTTAATTTGGCC 59.181 40.000 18.03 0.00 38.56 5.36
197 198 5.820947 CACCGAACTATAGTTAATTTGGCCT 59.179 40.000 18.03 0.00 38.56 5.19
198 199 6.317893 CACCGAACTATAGTTAATTTGGCCTT 59.682 38.462 18.03 0.00 38.56 4.35
199 200 6.541278 ACCGAACTATAGTTAATTTGGCCTTC 59.459 38.462 18.03 0.83 38.56 3.46
200 201 6.540914 CCGAACTATAGTTAATTTGGCCTTCA 59.459 38.462 18.03 0.00 38.56 3.02
201 202 7.407337 CGAACTATAGTTAATTTGGCCTTCAC 58.593 38.462 18.03 0.27 38.56 3.18
202 203 7.065324 CGAACTATAGTTAATTTGGCCTTCACA 59.935 37.037 18.03 0.00 38.56 3.58
203 204 7.625828 ACTATAGTTAATTTGGCCTTCACAC 57.374 36.000 3.32 0.00 0.00 3.82
204 205 7.402862 ACTATAGTTAATTTGGCCTTCACACT 58.597 34.615 3.32 1.69 0.00 3.55
205 206 7.888546 ACTATAGTTAATTTGGCCTTCACACTT 59.111 33.333 3.32 0.00 0.00 3.16
206 207 5.869649 AGTTAATTTGGCCTTCACACTTT 57.130 34.783 3.32 0.00 0.00 2.66
207 208 5.600696 AGTTAATTTGGCCTTCACACTTTG 58.399 37.500 3.32 0.00 0.00 2.77
208 209 5.362430 AGTTAATTTGGCCTTCACACTTTGA 59.638 36.000 3.32 0.00 0.00 2.69
209 210 3.733443 ATTTGGCCTTCACACTTTGAC 57.267 42.857 3.32 0.00 32.26 3.18
210 211 2.136298 TTGGCCTTCACACTTTGACA 57.864 45.000 3.32 0.00 32.26 3.58
211 212 1.679139 TGGCCTTCACACTTTGACAG 58.321 50.000 3.32 0.00 32.26 3.51
212 213 1.211703 TGGCCTTCACACTTTGACAGA 59.788 47.619 3.32 0.00 32.26 3.41
213 214 2.158623 TGGCCTTCACACTTTGACAGAT 60.159 45.455 3.32 0.00 32.26 2.90
214 215 2.485814 GGCCTTCACACTTTGACAGATC 59.514 50.000 0.00 0.00 32.26 2.75
215 216 3.406764 GCCTTCACACTTTGACAGATCT 58.593 45.455 0.00 0.00 32.26 2.75
216 217 4.563580 GGCCTTCACACTTTGACAGATCTA 60.564 45.833 0.00 0.00 32.26 1.98
217 218 4.629200 GCCTTCACACTTTGACAGATCTAG 59.371 45.833 0.00 0.00 32.26 2.43
218 219 4.629200 CCTTCACACTTTGACAGATCTAGC 59.371 45.833 0.00 0.00 32.26 3.42
219 220 4.871933 TCACACTTTGACAGATCTAGCA 57.128 40.909 0.00 0.00 0.00 3.49
220 221 4.814147 TCACACTTTGACAGATCTAGCAG 58.186 43.478 0.00 0.00 0.00 4.24
221 222 4.524328 TCACACTTTGACAGATCTAGCAGA 59.476 41.667 0.00 0.00 0.00 4.26
222 223 4.624882 CACACTTTGACAGATCTAGCAGAC 59.375 45.833 0.00 0.00 0.00 3.51
223 224 4.180057 CACTTTGACAGATCTAGCAGACC 58.820 47.826 0.00 0.00 0.00 3.85
303 307 7.492994 GGACTAGTTAATTTAGCCTTCACAGAG 59.507 40.741 0.00 0.00 0.00 3.35
308 312 3.423539 TTTAGCCTTCACAGAGCATGT 57.576 42.857 0.00 0.00 45.43 3.21
497 501 5.941948 ACTAATTTAAACGCTGCTTGTCT 57.058 34.783 0.00 0.00 0.00 3.41
551 584 3.385079 GCAACCGCTCATGTTAACTAC 57.615 47.619 7.22 0.00 34.30 2.73
552 585 2.222729 GCAACCGCTCATGTTAACTACG 60.223 50.000 7.22 3.64 34.30 3.51
555 588 2.490903 ACCGCTCATGTTAACTACGAGT 59.509 45.455 7.22 2.17 0.00 4.18
556 589 3.691118 ACCGCTCATGTTAACTACGAGTA 59.309 43.478 7.22 0.00 0.00 2.59
695 729 0.093026 GAAATGTTCGTCGCCTGTCG 59.907 55.000 0.00 0.00 40.15 4.35
710 744 1.046472 TGTCGTCCACAGGTTCTGGT 61.046 55.000 0.00 0.00 35.51 4.00
711 745 0.106149 GTCGTCCACAGGTTCTGGTT 59.894 55.000 0.00 0.00 35.51 3.67
712 746 0.105964 TCGTCCACAGGTTCTGGTTG 59.894 55.000 0.00 0.00 35.51 3.77
713 747 1.507141 CGTCCACAGGTTCTGGTTGC 61.507 60.000 0.00 0.00 35.51 4.17
714 748 0.179018 GTCCACAGGTTCTGGTTGCT 60.179 55.000 0.00 0.00 35.51 3.91
716 750 1.064017 TCCACAGGTTCTGGTTGCTTT 60.064 47.619 0.00 0.00 35.51 3.51
717 751 1.067516 CCACAGGTTCTGGTTGCTTTG 59.932 52.381 0.00 0.00 35.51 2.77
718 752 1.750778 CACAGGTTCTGGTTGCTTTGT 59.249 47.619 0.00 0.00 35.51 2.83
719 753 2.948979 CACAGGTTCTGGTTGCTTTGTA 59.051 45.455 0.00 0.00 35.51 2.41
720 754 3.380004 CACAGGTTCTGGTTGCTTTGTAA 59.620 43.478 0.00 0.00 35.51 2.41
721 755 4.037923 CACAGGTTCTGGTTGCTTTGTAAT 59.962 41.667 0.00 0.00 35.51 1.89
722 756 5.240623 CACAGGTTCTGGTTGCTTTGTAATA 59.759 40.000 0.00 0.00 35.51 0.98
723 757 5.240844 ACAGGTTCTGGTTGCTTTGTAATAC 59.759 40.000 0.00 0.00 35.51 1.89
724 758 5.240623 CAGGTTCTGGTTGCTTTGTAATACA 59.759 40.000 0.00 0.00 0.00 2.29
725 759 5.830991 AGGTTCTGGTTGCTTTGTAATACAA 59.169 36.000 1.08 1.08 36.11 2.41
726 760 6.322712 AGGTTCTGGTTGCTTTGTAATACAAA 59.677 34.615 16.57 16.57 44.91 2.83
736 770 4.855298 TTGTAATACAAAGGGAGGGGAG 57.145 45.455 2.97 0.00 34.76 4.30
737 771 4.083080 TGTAATACAAAGGGAGGGGAGA 57.917 45.455 0.00 0.00 0.00 3.71
738 772 3.778629 TGTAATACAAAGGGAGGGGAGAC 59.221 47.826 0.00 0.00 0.00 3.36
739 773 6.817233 TTGTAATACAAAGGGAGGGGAGACC 61.817 48.000 2.97 0.00 42.37 3.85
758 792 3.286353 ACCCTTTTTCGTAAAAACCGGA 58.714 40.909 9.46 0.00 35.57 5.14
763 797 0.860533 TTCGTAAAAACCGGACGCAG 59.139 50.000 9.46 0.00 36.54 5.18
791 825 2.686816 CCACGAACCGGGCATCAAC 61.687 63.158 6.32 0.00 0.00 3.18
864 898 3.197790 CGCAGAGCCATCCAACGG 61.198 66.667 0.00 0.00 0.00 4.44
865 899 2.268920 GCAGAGCCATCCAACGGA 59.731 61.111 0.00 0.00 35.55 4.69
867 901 1.450312 CAGAGCCATCCAACGGACC 60.450 63.158 0.00 0.00 32.98 4.46
890 928 1.991230 CCGGACCACTTTGGGATCT 59.009 57.895 0.00 0.00 43.37 2.75
954 993 0.625849 AAGGATGGACCCGAAATGCT 59.374 50.000 0.00 0.00 40.05 3.79
1172 1219 4.273257 GGGTCGAGCGAGCTAGCC 62.273 72.222 15.76 6.23 41.80 3.93
1183 1234 1.134965 CGAGCTAGCCAGTTAGTTGCT 60.135 52.381 12.13 0.00 39.10 3.91
1184 1235 2.545731 GAGCTAGCCAGTTAGTTGCTC 58.454 52.381 12.13 0.00 38.58 4.26
1327 1378 2.288886 GGTGGGCTTAGGTATGATCGTC 60.289 54.545 0.00 0.00 0.00 4.20
1493 1553 4.142816 GCTTAGGTTACGACGTCAACTCTA 60.143 45.833 17.16 12.73 0.00 2.43
1498 1558 4.978580 GGTTACGACGTCAACTCTAGTTTT 59.021 41.667 17.16 0.00 35.83 2.43
1706 1809 3.509967 TCTCCATTTACTCGTTCTCTGCA 59.490 43.478 0.00 0.00 0.00 4.41
1730 1833 1.086067 ATCACGCTGCACAAGATCGG 61.086 55.000 0.00 0.00 0.00 4.18
1779 1886 2.607750 TGTGGTCTGGCCTCCTCC 60.608 66.667 3.32 1.89 38.35 4.30
1973 2084 1.875963 GCAACAAGCGCACTGGTAT 59.124 52.632 11.47 0.00 26.45 2.73
1977 2088 2.010145 ACAAGCGCACTGGTATGTAG 57.990 50.000 11.47 0.00 0.00 2.74
1978 2089 1.275291 ACAAGCGCACTGGTATGTAGT 59.725 47.619 11.47 0.00 0.00 2.73
2027 2204 2.253392 GCGTACAGCGTACAGTACTT 57.747 50.000 9.10 0.00 43.66 2.24
2028 2205 1.909532 GCGTACAGCGTACAGTACTTG 59.090 52.381 9.10 9.28 43.66 3.16
2032 2209 4.494764 CGTACAGCGTACAGTACTTGATTC 59.505 45.833 15.32 7.14 36.81 2.52
2043 2227 5.473504 ACAGTACTTGATTCATTGTTGGTCC 59.526 40.000 0.00 0.00 0.00 4.46
2055 2239 0.038159 GTTGGTCCCTCACTCTGACG 60.038 60.000 0.00 0.00 0.00 4.35
2056 2240 1.185618 TTGGTCCCTCACTCTGACGG 61.186 60.000 0.00 0.00 0.00 4.79
2349 2537 2.270205 CAGATCTGCGGGGTGCTT 59.730 61.111 10.38 0.00 46.63 3.91
2400 2588 3.071837 TACACCATCGCCGCCTCA 61.072 61.111 0.00 0.00 0.00 3.86
2412 2600 1.647629 CGCCTCAATCAGCATGCTC 59.352 57.895 19.68 2.62 34.76 4.26
3151 3492 4.162690 GCGAAGAGGTGGCCGGAT 62.163 66.667 5.05 0.00 0.00 4.18
3358 3702 0.179145 CGGTGGAGATGTACGTGGTC 60.179 60.000 0.00 0.00 0.00 4.02
3415 3759 1.406065 GCCTCCAGATGCTCAGCCTA 61.406 60.000 0.00 0.00 0.00 3.93
3511 3855 5.418524 CCACCCATTCAAGACATAATTGACA 59.581 40.000 0.00 0.00 36.44 3.58
3515 3859 8.253113 ACCCATTCAAGACATAATTGACATTTC 58.747 33.333 0.00 0.00 36.44 2.17
3540 3885 1.404477 GTGCACGCACAAACAATACC 58.596 50.000 17.03 0.00 45.53 2.73
3547 3902 2.095263 CGCACAAACAATACCTCAAGGG 60.095 50.000 0.29 0.00 40.27 3.95
3561 3916 3.523564 CCTCAAGGGGTAGGATTCAAGAA 59.476 47.826 0.00 0.00 34.58 2.52
3564 3919 5.570320 TCAAGGGGTAGGATTCAAGAAAAG 58.430 41.667 0.00 0.00 0.00 2.27
3578 3933 5.393866 TCAAGAAAAGGAAGTTATTGGCCT 58.606 37.500 3.32 0.00 0.00 5.19
3588 3943 6.052360 GGAAGTTATTGGCCTTTCAAACAAA 58.948 36.000 3.32 0.00 0.00 2.83
3645 4001 6.968131 CTTCATGAAGTAGATTCCGAAACA 57.032 37.500 24.65 0.00 37.08 2.83
3646 4002 6.968131 TTCATGAAGTAGATTCCGAAACAG 57.032 37.500 3.38 0.00 37.08 3.16
3647 4003 6.037786 TCATGAAGTAGATTCCGAAACAGT 57.962 37.500 0.00 0.00 37.08 3.55
3648 4004 5.869344 TCATGAAGTAGATTCCGAAACAGTG 59.131 40.000 0.00 0.00 37.08 3.66
3649 4005 5.209818 TGAAGTAGATTCCGAAACAGTGT 57.790 39.130 0.00 0.00 37.08 3.55
3650 4006 6.335471 TGAAGTAGATTCCGAAACAGTGTA 57.665 37.500 0.00 0.00 37.08 2.90
3651 4007 6.931838 TGAAGTAGATTCCGAAACAGTGTAT 58.068 36.000 0.00 0.00 37.08 2.29
3652 4008 6.811665 TGAAGTAGATTCCGAAACAGTGTATG 59.188 38.462 0.00 0.00 37.08 2.39
3653 4009 6.525578 AGTAGATTCCGAAACAGTGTATGA 57.474 37.500 0.00 0.00 0.00 2.15
3654 4010 7.113658 AGTAGATTCCGAAACAGTGTATGAT 57.886 36.000 0.00 0.00 0.00 2.45
3655 4011 8.234136 AGTAGATTCCGAAACAGTGTATGATA 57.766 34.615 0.00 0.00 0.00 2.15
3656 4012 8.692710 AGTAGATTCCGAAACAGTGTATGATAA 58.307 33.333 0.00 0.00 0.00 1.75
3657 4013 8.969267 GTAGATTCCGAAACAGTGTATGATAAG 58.031 37.037 0.00 0.00 0.00 1.73
3658 4014 7.782049 AGATTCCGAAACAGTGTATGATAAGA 58.218 34.615 0.00 0.00 0.00 2.10
3659 4015 7.707035 AGATTCCGAAACAGTGTATGATAAGAC 59.293 37.037 0.00 0.00 0.00 3.01
3660 4016 6.525578 TCCGAAACAGTGTATGATAAGACT 57.474 37.500 0.00 0.00 0.00 3.24
3661 4017 7.634671 TCCGAAACAGTGTATGATAAGACTA 57.365 36.000 0.00 0.00 0.00 2.59
3662 4018 8.058667 TCCGAAACAGTGTATGATAAGACTAA 57.941 34.615 0.00 0.00 0.00 2.24
3663 4019 7.972277 TCCGAAACAGTGTATGATAAGACTAAC 59.028 37.037 0.00 0.00 0.00 2.34
3664 4020 7.974501 CCGAAACAGTGTATGATAAGACTAACT 59.025 37.037 0.00 0.00 0.00 2.24
3665 4021 9.999009 CGAAACAGTGTATGATAAGACTAACTA 57.001 33.333 0.00 0.00 0.00 2.24
3726 4082 9.805204 AATTCCTGATAGGTATATTATCTGGGT 57.195 33.333 20.65 13.38 42.40 4.51
3727 4083 8.609617 TTCCTGATAGGTATATTATCTGGGTG 57.390 38.462 20.65 7.32 42.40 4.61
3728 4084 7.950803 TCCTGATAGGTATATTATCTGGGTGA 58.049 38.462 20.65 9.12 42.40 4.02
3729 4085 8.578376 TCCTGATAGGTATATTATCTGGGTGAT 58.422 37.037 20.65 0.00 42.40 3.06
3730 4086 8.646004 CCTGATAGGTATATTATCTGGGTGATG 58.354 40.741 16.91 1.80 40.32 3.07
3731 4087 8.023021 TGATAGGTATATTATCTGGGTGATGC 57.977 38.462 8.04 0.00 36.65 3.91
3732 4088 7.623278 TGATAGGTATATTATCTGGGTGATGCA 59.377 37.037 0.00 0.00 36.65 3.96
3733 4089 6.305272 AGGTATATTATCTGGGTGATGCAG 57.695 41.667 0.00 0.00 36.65 4.41
3734 4090 6.025539 AGGTATATTATCTGGGTGATGCAGA 58.974 40.000 0.00 0.00 36.65 4.26
3735 4091 6.070538 AGGTATATTATCTGGGTGATGCAGAC 60.071 42.308 0.00 0.00 36.65 3.51
3736 4092 6.070538 GGTATATTATCTGGGTGATGCAGACT 60.071 42.308 0.00 0.00 36.65 3.24
3737 4093 3.548745 TTATCTGGGTGATGCAGACTG 57.451 47.619 0.00 0.00 36.65 3.51
3738 4094 1.283347 ATCTGGGTGATGCAGACTGT 58.717 50.000 3.99 0.00 33.43 3.55
3739 4095 1.937191 TCTGGGTGATGCAGACTGTA 58.063 50.000 3.99 0.00 0.00 2.74
3740 4096 2.256306 TCTGGGTGATGCAGACTGTAA 58.744 47.619 3.99 0.00 0.00 2.41
3741 4097 2.028112 TCTGGGTGATGCAGACTGTAAC 60.028 50.000 3.99 0.00 0.00 2.50
3742 4098 1.977854 TGGGTGATGCAGACTGTAACT 59.022 47.619 3.99 0.00 0.00 2.24
3743 4099 2.371841 TGGGTGATGCAGACTGTAACTT 59.628 45.455 3.99 0.00 0.00 2.66
3744 4100 3.003480 GGGTGATGCAGACTGTAACTTC 58.997 50.000 3.99 0.00 0.00 3.01
3745 4101 3.307059 GGGTGATGCAGACTGTAACTTCT 60.307 47.826 3.99 0.00 0.00 2.85
3746 4102 3.681897 GGTGATGCAGACTGTAACTTCTG 59.318 47.826 3.99 0.00 41.96 3.02
3747 4103 3.681897 GTGATGCAGACTGTAACTTCTGG 59.318 47.826 3.99 0.00 39.81 3.86
3748 4104 3.324846 TGATGCAGACTGTAACTTCTGGT 59.675 43.478 3.99 0.00 39.81 4.00
3749 4105 4.526650 TGATGCAGACTGTAACTTCTGGTA 59.473 41.667 3.99 0.00 39.81 3.25
3750 4106 4.948341 TGCAGACTGTAACTTCTGGTAA 57.052 40.909 3.99 0.00 39.81 2.85
3751 4107 5.284861 TGCAGACTGTAACTTCTGGTAAA 57.715 39.130 3.99 0.00 39.81 2.01
3752 4108 5.297547 TGCAGACTGTAACTTCTGGTAAAG 58.702 41.667 3.99 0.00 39.81 1.85
3753 4109 5.163343 TGCAGACTGTAACTTCTGGTAAAGT 60.163 40.000 3.99 0.00 41.20 2.66
3754 4110 6.041182 TGCAGACTGTAACTTCTGGTAAAGTA 59.959 38.462 3.99 0.00 38.52 2.24
3755 4111 6.586844 GCAGACTGTAACTTCTGGTAAAGTAG 59.413 42.308 3.99 0.00 38.52 2.57
3756 4112 6.586844 CAGACTGTAACTTCTGGTAAAGTAGC 59.413 42.308 0.00 0.00 38.52 3.58
3757 4113 6.494146 AGACTGTAACTTCTGGTAAAGTAGCT 59.506 38.462 0.00 0.00 38.52 3.32
3758 4114 6.456501 ACTGTAACTTCTGGTAAAGTAGCTG 58.543 40.000 0.00 0.00 38.52 4.24
3759 4115 6.041751 ACTGTAACTTCTGGTAAAGTAGCTGT 59.958 38.462 0.00 0.00 38.52 4.40
3760 4116 7.232127 ACTGTAACTTCTGGTAAAGTAGCTGTA 59.768 37.037 0.00 0.00 38.52 2.74
3761 4117 7.954835 TGTAACTTCTGGTAAAGTAGCTGTAA 58.045 34.615 0.00 0.00 38.52 2.41
3762 4118 8.591072 TGTAACTTCTGGTAAAGTAGCTGTAAT 58.409 33.333 0.00 0.00 38.52 1.89
3763 4119 7.907214 AACTTCTGGTAAAGTAGCTGTAATG 57.093 36.000 0.00 0.00 38.52 1.90
3764 4120 6.407202 ACTTCTGGTAAAGTAGCTGTAATGG 58.593 40.000 0.00 0.00 37.71 3.16
3765 4121 6.013639 ACTTCTGGTAAAGTAGCTGTAATGGT 60.014 38.462 0.00 0.00 37.71 3.55
3766 4122 5.974108 TCTGGTAAAGTAGCTGTAATGGTC 58.026 41.667 0.00 0.00 0.00 4.02
3767 4123 5.482526 TCTGGTAAAGTAGCTGTAATGGTCA 59.517 40.000 0.00 0.00 0.00 4.02
3768 4124 6.014070 TCTGGTAAAGTAGCTGTAATGGTCAA 60.014 38.462 0.00 0.00 0.00 3.18
3769 4125 6.717289 TGGTAAAGTAGCTGTAATGGTCAAT 58.283 36.000 0.00 0.00 0.00 2.57
3770 4126 6.597672 TGGTAAAGTAGCTGTAATGGTCAATG 59.402 38.462 0.00 0.00 0.00 2.82
3771 4127 6.821665 GGTAAAGTAGCTGTAATGGTCAATGA 59.178 38.462 0.00 0.00 0.00 2.57
3772 4128 6.743575 AAAGTAGCTGTAATGGTCAATGAC 57.256 37.500 4.51 4.51 0.00 3.06
3836 4192 6.780457 AAAAATGGACAATGACCAGATAGG 57.220 37.500 10.49 0.00 40.89 2.57
3865 4221 5.540400 TTTCCCTACTACAACCGGATATG 57.460 43.478 9.46 6.80 0.00 1.78
3875 4231 6.934645 ACTACAACCGGATATGACAAATATGG 59.065 38.462 9.46 0.00 0.00 2.74
3887 4244 1.750778 CAAATATGGCCCTCAAACGCT 59.249 47.619 0.00 0.00 0.00 5.07
3890 4247 2.587322 TATGGCCCTCAAACGCTCGG 62.587 60.000 0.00 0.00 0.00 4.63
3894 4251 2.584608 CCTCAAACGCTCGGGGAT 59.415 61.111 0.00 0.00 0.00 3.85
3895 4252 1.682451 CCCTCAAACGCTCGGGGATA 61.682 60.000 0.00 0.00 39.42 2.59
3897 4254 0.870307 CTCAAACGCTCGGGGATACG 60.870 60.000 0.00 0.00 37.60 3.06
3922 4279 2.028484 GCGTCCGTGGACAGTGAA 59.972 61.111 18.54 0.00 44.77 3.18
3925 4282 1.361271 GTCCGTGGACAGTGAACGA 59.639 57.895 14.10 3.81 44.02 3.85
3942 4299 3.340814 ACGAGCACTCCTCAAATCAAT 57.659 42.857 0.00 0.00 40.78 2.57
3944 4301 5.028549 ACGAGCACTCCTCAAATCAATAT 57.971 39.130 0.00 0.00 40.78 1.28
3947 4304 7.220030 ACGAGCACTCCTCAAATCAATATAAT 58.780 34.615 0.00 0.00 40.78 1.28
3976 4333 6.307776 TCCGGACATCTCATACTAGATTCTT 58.692 40.000 0.00 0.00 33.87 2.52
4016 4373 6.804783 GCATGCAAACTTAAAAACCTACGTAT 59.195 34.615 14.21 0.00 0.00 3.06
4100 4489 1.073125 TCCTCCTCCTCTATCTCTGCG 59.927 57.143 0.00 0.00 0.00 5.18
4187 4576 3.176411 CACATAGGCCTCATCCTGGATA 58.824 50.000 9.68 0.00 37.01 2.59
4188 4577 3.779183 CACATAGGCCTCATCCTGGATAT 59.221 47.826 9.68 0.00 37.01 1.63
4190 4579 5.426509 CACATAGGCCTCATCCTGGATATAA 59.573 44.000 9.68 0.00 37.01 0.98
4263 4652 4.479993 CCTCTGCCTCCGCCAAGG 62.480 72.222 0.00 0.00 42.97 3.61
4299 4688 0.035056 GGCTGCTTTGCTTCCTCCTA 60.035 55.000 0.00 0.00 0.00 2.94
4350 4739 2.133641 GCAGCTCTCCCTCCTCCTC 61.134 68.421 0.00 0.00 0.00 3.71
4358 4747 2.328589 CCCTCCTCCTCCTCCTCCA 61.329 68.421 0.00 0.00 0.00 3.86
4441 4830 3.567797 GCGCGTCTTGCCTGGATC 61.568 66.667 8.43 0.00 42.08 3.36
4443 4832 1.448540 CGCGTCTTGCCTGGATCTT 60.449 57.895 0.00 0.00 42.08 2.40
4468 4857 2.913060 ATCTACCTCCGGCGCTCC 60.913 66.667 7.64 0.00 0.00 4.70
4469 4858 3.733507 ATCTACCTCCGGCGCTCCA 62.734 63.158 7.64 0.00 0.00 3.86
4477 4866 4.827087 CGGCGCTCCAGCATGAGT 62.827 66.667 7.64 0.00 39.69 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.432982 AGCCTAAATATTTTCCCATGTTATTGA 57.567 29.630 5.91 0.00 0.00 2.57
5 6 9.212593 ACAAGCCTAAATATTTTCCCATGTTAT 57.787 29.630 5.91 0.00 0.00 1.89
6 7 8.602472 ACAAGCCTAAATATTTTCCCATGTTA 57.398 30.769 5.91 0.00 0.00 2.41
7 8 7.494922 ACAAGCCTAAATATTTTCCCATGTT 57.505 32.000 5.91 0.00 0.00 2.71
8 9 8.782137 ATACAAGCCTAAATATTTTCCCATGT 57.218 30.769 5.91 9.29 0.00 3.21
18 19 9.890915 TGGGGAAAATTATACAAGCCTAAATAT 57.109 29.630 0.00 0.00 0.00 1.28
19 20 9.716556 TTGGGGAAAATTATACAAGCCTAAATA 57.283 29.630 0.00 0.00 0.00 1.40
20 21 8.616799 TTGGGGAAAATTATACAAGCCTAAAT 57.383 30.769 0.00 0.00 0.00 1.40
21 22 8.437274 TTTGGGGAAAATTATACAAGCCTAAA 57.563 30.769 0.00 0.00 0.00 1.85
22 23 8.315482 GTTTTGGGGAAAATTATACAAGCCTAA 58.685 33.333 0.00 0.00 0.00 2.69
23 24 7.455008 TGTTTTGGGGAAAATTATACAAGCCTA 59.545 33.333 0.00 0.00 0.00 3.93
24 25 6.271159 TGTTTTGGGGAAAATTATACAAGCCT 59.729 34.615 0.00 0.00 0.00 4.58
25 26 6.468543 TGTTTTGGGGAAAATTATACAAGCC 58.531 36.000 0.00 0.00 0.00 4.35
26 27 8.560355 AATGTTTTGGGGAAAATTATACAAGC 57.440 30.769 0.00 0.00 0.00 4.01
27 28 9.161629 GGAATGTTTTGGGGAAAATTATACAAG 57.838 33.333 0.00 0.00 0.00 3.16
28 29 8.885346 AGGAATGTTTTGGGGAAAATTATACAA 58.115 29.630 0.00 0.00 0.00 2.41
29 30 8.442660 AGGAATGTTTTGGGGAAAATTATACA 57.557 30.769 0.00 0.00 0.00 2.29
30 31 9.161629 CAAGGAATGTTTTGGGGAAAATTATAC 57.838 33.333 0.00 0.00 0.00 1.47
31 32 8.325046 CCAAGGAATGTTTTGGGGAAAATTATA 58.675 33.333 0.00 0.00 40.11 0.98
32 33 7.174413 CCAAGGAATGTTTTGGGGAAAATTAT 58.826 34.615 0.00 0.00 40.11 1.28
33 34 6.538263 CCAAGGAATGTTTTGGGGAAAATTA 58.462 36.000 0.00 0.00 40.11 1.40
34 35 5.384336 CCAAGGAATGTTTTGGGGAAAATT 58.616 37.500 0.00 0.00 40.11 1.82
35 36 4.749476 GCCAAGGAATGTTTTGGGGAAAAT 60.749 41.667 5.51 0.00 43.23 1.82
36 37 3.434310 GCCAAGGAATGTTTTGGGGAAAA 60.434 43.478 5.51 0.00 43.23 2.29
37 38 2.105649 GCCAAGGAATGTTTTGGGGAAA 59.894 45.455 5.51 0.00 43.23 3.13
38 39 1.696884 GCCAAGGAATGTTTTGGGGAA 59.303 47.619 5.51 0.00 43.23 3.97
39 40 1.347062 GCCAAGGAATGTTTTGGGGA 58.653 50.000 5.51 0.00 43.23 4.81
40 41 1.055040 TGCCAAGGAATGTTTTGGGG 58.945 50.000 5.51 0.00 43.23 4.96
41 42 2.038820 ACATGCCAAGGAATGTTTTGGG 59.961 45.455 6.90 0.00 41.34 4.12
42 43 3.068560 CACATGCCAAGGAATGTTTTGG 58.931 45.455 10.09 0.00 41.34 3.28
43 44 3.992643 TCACATGCCAAGGAATGTTTTG 58.007 40.909 10.09 0.26 41.34 2.44
44 45 4.322953 GGATCACATGCCAAGGAATGTTTT 60.323 41.667 10.09 0.98 41.34 2.43
45 46 3.196254 GGATCACATGCCAAGGAATGTTT 59.804 43.478 10.09 1.34 41.34 2.83
46 47 2.762327 GGATCACATGCCAAGGAATGTT 59.238 45.455 10.09 0.00 41.34 2.71
47 48 2.024655 AGGATCACATGCCAAGGAATGT 60.025 45.455 6.90 6.90 44.73 2.71
48 49 2.361119 CAGGATCACATGCCAAGGAATG 59.639 50.000 5.49 5.49 37.19 2.67
49 50 2.024655 ACAGGATCACATGCCAAGGAAT 60.025 45.455 0.00 0.00 0.00 3.01
50 51 1.355381 ACAGGATCACATGCCAAGGAA 59.645 47.619 0.00 0.00 0.00 3.36
51 52 0.994247 ACAGGATCACATGCCAAGGA 59.006 50.000 0.00 0.00 0.00 3.36
52 53 1.100510 CACAGGATCACATGCCAAGG 58.899 55.000 0.00 0.00 0.00 3.61
53 54 2.118313 TCACAGGATCACATGCCAAG 57.882 50.000 0.00 0.00 0.00 3.61
54 55 2.371306 CATCACAGGATCACATGCCAA 58.629 47.619 0.00 0.00 0.00 4.52
55 56 2.020181 GCATCACAGGATCACATGCCA 61.020 52.381 0.00 0.00 34.91 4.92
56 57 0.666913 GCATCACAGGATCACATGCC 59.333 55.000 0.00 0.00 34.91 4.40
57 58 1.065102 GTGCATCACAGGATCACATGC 59.935 52.381 0.00 1.13 40.29 4.06
58 59 2.096980 GTGTGCATCACAGGATCACATG 59.903 50.000 12.63 0.00 45.43 3.21
59 60 2.362736 GTGTGCATCACAGGATCACAT 58.637 47.619 12.63 0.00 45.43 3.21
60 61 1.812235 GTGTGCATCACAGGATCACA 58.188 50.000 12.63 0.00 45.43 3.58
69 70 1.174712 AGCTTGGGTGTGTGCATCAC 61.175 55.000 14.02 14.02 46.31 3.06
70 71 0.467844 AAGCTTGGGTGTGTGCATCA 60.468 50.000 0.00 0.00 0.00 3.07
71 72 1.200020 GTAAGCTTGGGTGTGTGCATC 59.800 52.381 9.86 0.00 0.00 3.91
72 73 1.247567 GTAAGCTTGGGTGTGTGCAT 58.752 50.000 9.86 0.00 0.00 3.96
73 74 0.106967 TGTAAGCTTGGGTGTGTGCA 60.107 50.000 9.86 0.00 0.00 4.57
74 75 1.028905 TTGTAAGCTTGGGTGTGTGC 58.971 50.000 9.86 0.00 0.00 4.57
75 76 5.446143 TTATTTGTAAGCTTGGGTGTGTG 57.554 39.130 9.86 0.00 0.00 3.82
76 77 6.266558 TGATTTATTTGTAAGCTTGGGTGTGT 59.733 34.615 9.86 0.00 0.00 3.72
77 78 6.686630 TGATTTATTTGTAAGCTTGGGTGTG 58.313 36.000 9.86 0.00 0.00 3.82
78 79 6.719370 TCTGATTTATTTGTAAGCTTGGGTGT 59.281 34.615 9.86 0.00 0.00 4.16
79 80 7.156876 TCTGATTTATTTGTAAGCTTGGGTG 57.843 36.000 9.86 0.00 0.00 4.61
80 81 7.574967 CGTTCTGATTTATTTGTAAGCTTGGGT 60.575 37.037 9.86 0.00 0.00 4.51
81 82 6.747280 CGTTCTGATTTATTTGTAAGCTTGGG 59.253 38.462 9.86 0.00 0.00 4.12
82 83 7.526608 TCGTTCTGATTTATTTGTAAGCTTGG 58.473 34.615 9.86 0.00 0.00 3.61
83 84 8.948853 TTCGTTCTGATTTATTTGTAAGCTTG 57.051 30.769 9.86 0.00 0.00 4.01
84 85 8.237267 CCTTCGTTCTGATTTATTTGTAAGCTT 58.763 33.333 3.48 3.48 0.00 3.74
85 86 7.390718 ACCTTCGTTCTGATTTATTTGTAAGCT 59.609 33.333 0.00 0.00 0.00 3.74
86 87 7.527457 ACCTTCGTTCTGATTTATTTGTAAGC 58.473 34.615 0.00 0.00 0.00 3.09
89 90 8.662141 GCTAACCTTCGTTCTGATTTATTTGTA 58.338 33.333 0.00 0.00 33.17 2.41
90 91 7.390718 AGCTAACCTTCGTTCTGATTTATTTGT 59.609 33.333 0.00 0.00 33.17 2.83
91 92 7.752695 AGCTAACCTTCGTTCTGATTTATTTG 58.247 34.615 0.00 0.00 33.17 2.32
92 93 7.923414 AGCTAACCTTCGTTCTGATTTATTT 57.077 32.000 0.00 0.00 33.17 1.40
93 94 7.626452 GCAAGCTAACCTTCGTTCTGATTTATT 60.626 37.037 0.00 0.00 33.17 1.40
94 95 6.183360 GCAAGCTAACCTTCGTTCTGATTTAT 60.183 38.462 0.00 0.00 33.17 1.40
95 96 5.121768 GCAAGCTAACCTTCGTTCTGATTTA 59.878 40.000 0.00 0.00 33.17 1.40
96 97 4.083271 GCAAGCTAACCTTCGTTCTGATTT 60.083 41.667 0.00 0.00 33.17 2.17
97 98 3.437049 GCAAGCTAACCTTCGTTCTGATT 59.563 43.478 0.00 0.00 33.17 2.57
98 99 3.003480 GCAAGCTAACCTTCGTTCTGAT 58.997 45.455 0.00 0.00 33.17 2.90
99 100 2.413837 GCAAGCTAACCTTCGTTCTGA 58.586 47.619 0.00 0.00 33.17 3.27
100 101 1.464997 GGCAAGCTAACCTTCGTTCTG 59.535 52.381 0.00 0.00 33.17 3.02
101 102 1.348036 AGGCAAGCTAACCTTCGTTCT 59.652 47.619 1.55 0.00 29.74 3.01
102 103 1.809684 AGGCAAGCTAACCTTCGTTC 58.190 50.000 1.55 0.00 29.74 3.95
103 104 2.973945 CTAGGCAAGCTAACCTTCGTT 58.026 47.619 12.39 0.00 37.50 3.85
104 105 2.674796 CTAGGCAAGCTAACCTTCGT 57.325 50.000 12.39 0.00 37.50 3.85
123 124 2.103537 TAAAACCCACTAGCGAAGGC 57.896 50.000 0.00 0.00 40.37 4.35
124 125 5.441709 TTTTTAAAACCCACTAGCGAAGG 57.558 39.130 0.00 0.00 0.00 3.46
125 126 7.586747 TGTATTTTTAAAACCCACTAGCGAAG 58.413 34.615 0.00 0.00 0.00 3.79
126 127 7.507733 TGTATTTTTAAAACCCACTAGCGAA 57.492 32.000 0.00 0.00 0.00 4.70
127 128 7.507733 TTGTATTTTTAAAACCCACTAGCGA 57.492 32.000 0.00 0.00 0.00 4.93
128 129 7.863877 AGTTTGTATTTTTAAAACCCACTAGCG 59.136 33.333 0.00 0.00 34.96 4.26
129 130 9.188588 GAGTTTGTATTTTTAAAACCCACTAGC 57.811 33.333 0.00 0.00 34.96 3.42
133 134 9.172820 CGTAGAGTTTGTATTTTTAAAACCCAC 57.827 33.333 0.00 0.00 34.96 4.61
134 135 9.118300 TCGTAGAGTTTGTATTTTTAAAACCCA 57.882 29.630 0.00 0.00 34.96 4.51
142 143 8.440833 GCTGTACATCGTAGAGTTTGTATTTTT 58.559 33.333 0.00 0.00 43.63 1.94
143 144 7.064253 GGCTGTACATCGTAGAGTTTGTATTTT 59.936 37.037 0.00 0.00 43.63 1.82
144 145 6.534079 GGCTGTACATCGTAGAGTTTGTATTT 59.466 38.462 0.00 0.00 43.63 1.40
145 146 6.040878 GGCTGTACATCGTAGAGTTTGTATT 58.959 40.000 0.00 0.00 43.63 1.89
146 147 5.589192 GGCTGTACATCGTAGAGTTTGTAT 58.411 41.667 0.00 0.00 43.63 2.29
147 148 4.437794 CGGCTGTACATCGTAGAGTTTGTA 60.438 45.833 0.00 0.00 43.63 2.41
148 149 3.672511 CGGCTGTACATCGTAGAGTTTGT 60.673 47.826 0.00 0.00 43.63 2.83
149 150 2.852413 CGGCTGTACATCGTAGAGTTTG 59.148 50.000 0.00 0.00 43.63 2.93
150 151 2.751259 TCGGCTGTACATCGTAGAGTTT 59.249 45.455 15.25 0.00 43.63 2.66
151 152 2.362736 TCGGCTGTACATCGTAGAGTT 58.637 47.619 15.25 0.00 43.63 3.01
152 153 2.034104 TCGGCTGTACATCGTAGAGT 57.966 50.000 15.25 0.00 43.63 3.24
153 154 2.548480 TGATCGGCTGTACATCGTAGAG 59.452 50.000 15.25 0.00 43.63 2.43
154 155 2.289820 GTGATCGGCTGTACATCGTAGA 59.710 50.000 15.25 5.09 45.75 2.59
155 156 2.604855 GGTGATCGGCTGTACATCGTAG 60.605 54.545 15.25 0.00 0.00 3.51
156 157 1.335810 GGTGATCGGCTGTACATCGTA 59.664 52.381 15.25 6.19 0.00 3.43
157 158 0.102481 GGTGATCGGCTGTACATCGT 59.898 55.000 15.25 6.25 0.00 3.73
158 159 0.934901 CGGTGATCGGCTGTACATCG 60.935 60.000 11.33 11.33 34.75 3.84
159 160 0.384309 TCGGTGATCGGCTGTACATC 59.616 55.000 0.00 0.00 39.77 3.06
160 161 0.821517 TTCGGTGATCGGCTGTACAT 59.178 50.000 0.00 0.00 39.77 2.29
161 162 0.108992 GTTCGGTGATCGGCTGTACA 60.109 55.000 0.00 0.00 39.77 2.90
162 163 0.172803 AGTTCGGTGATCGGCTGTAC 59.827 55.000 0.00 0.00 39.77 2.90
163 164 1.753930 TAGTTCGGTGATCGGCTGTA 58.246 50.000 0.00 0.00 39.77 2.74
164 165 1.112113 ATAGTTCGGTGATCGGCTGT 58.888 50.000 0.00 0.00 39.77 4.40
165 166 2.293677 ACTATAGTTCGGTGATCGGCTG 59.706 50.000 0.00 0.00 39.77 4.85
166 167 2.584236 ACTATAGTTCGGTGATCGGCT 58.416 47.619 0.00 0.00 39.77 5.52
167 168 3.366440 AACTATAGTTCGGTGATCGGC 57.634 47.619 12.50 0.00 39.77 5.54
168 169 7.095774 CCAAATTAACTATAGTTCGGTGATCGG 60.096 40.741 21.25 9.42 39.31 4.18
169 170 7.568861 GCCAAATTAACTATAGTTCGGTGATCG 60.569 40.741 21.25 5.50 39.31 3.69
170 171 7.307811 GGCCAAATTAACTATAGTTCGGTGATC 60.308 40.741 21.25 7.79 39.31 2.92
171 172 6.485648 GGCCAAATTAACTATAGTTCGGTGAT 59.514 38.462 21.25 6.90 39.31 3.06
172 173 5.818857 GGCCAAATTAACTATAGTTCGGTGA 59.181 40.000 21.25 1.04 39.31 4.02
173 174 5.820947 AGGCCAAATTAACTATAGTTCGGTG 59.179 40.000 21.25 14.28 39.31 4.94
174 175 5.997843 AGGCCAAATTAACTATAGTTCGGT 58.002 37.500 21.25 6.47 39.31 4.69
175 176 6.540914 TGAAGGCCAAATTAACTATAGTTCGG 59.459 38.462 21.25 15.01 39.31 4.30
176 177 7.065324 TGTGAAGGCCAAATTAACTATAGTTCG 59.935 37.037 21.25 6.66 39.31 3.95
177 178 8.182227 GTGTGAAGGCCAAATTAACTATAGTTC 58.818 37.037 21.25 5.62 39.31 3.01
178 179 7.888546 AGTGTGAAGGCCAAATTAACTATAGTT 59.111 33.333 21.35 21.35 41.73 2.24
179 180 7.402862 AGTGTGAAGGCCAAATTAACTATAGT 58.597 34.615 5.01 0.00 0.00 2.12
180 181 7.865706 AGTGTGAAGGCCAAATTAACTATAG 57.134 36.000 5.01 0.00 0.00 1.31
181 182 8.519526 CAAAGTGTGAAGGCCAAATTAACTATA 58.480 33.333 5.01 0.00 0.00 1.31
182 183 7.232534 TCAAAGTGTGAAGGCCAAATTAACTAT 59.767 33.333 5.01 0.00 31.51 2.12
183 184 6.547880 TCAAAGTGTGAAGGCCAAATTAACTA 59.452 34.615 5.01 0.00 31.51 2.24
184 185 5.362430 TCAAAGTGTGAAGGCCAAATTAACT 59.638 36.000 5.01 0.00 31.51 2.24
185 186 5.462068 GTCAAAGTGTGAAGGCCAAATTAAC 59.538 40.000 5.01 0.00 38.23 2.01
186 187 5.127845 TGTCAAAGTGTGAAGGCCAAATTAA 59.872 36.000 5.01 0.00 38.23 1.40
187 188 4.646945 TGTCAAAGTGTGAAGGCCAAATTA 59.353 37.500 5.01 0.00 38.23 1.40
188 189 3.450457 TGTCAAAGTGTGAAGGCCAAATT 59.550 39.130 5.01 0.00 38.23 1.82
189 190 3.030291 TGTCAAAGTGTGAAGGCCAAAT 58.970 40.909 5.01 0.00 38.23 2.32
190 191 2.426738 CTGTCAAAGTGTGAAGGCCAAA 59.573 45.455 5.01 0.00 38.23 3.28
191 192 2.023673 CTGTCAAAGTGTGAAGGCCAA 58.976 47.619 5.01 0.00 38.23 4.52
192 193 1.211703 TCTGTCAAAGTGTGAAGGCCA 59.788 47.619 5.01 0.00 38.23 5.36
193 194 1.967319 TCTGTCAAAGTGTGAAGGCC 58.033 50.000 0.00 0.00 38.23 5.19
194 195 3.406764 AGATCTGTCAAAGTGTGAAGGC 58.593 45.455 0.00 0.00 38.23 4.35
195 196 4.629200 GCTAGATCTGTCAAAGTGTGAAGG 59.371 45.833 5.18 0.00 38.23 3.46
196 197 5.233225 TGCTAGATCTGTCAAAGTGTGAAG 58.767 41.667 5.18 0.00 38.23 3.02
197 198 5.011023 TCTGCTAGATCTGTCAAAGTGTGAA 59.989 40.000 5.18 0.00 38.23 3.18
198 199 4.524328 TCTGCTAGATCTGTCAAAGTGTGA 59.476 41.667 5.18 0.00 0.00 3.58
199 200 4.624882 GTCTGCTAGATCTGTCAAAGTGTG 59.375 45.833 5.18 0.00 0.00 3.82
200 201 4.322349 GGTCTGCTAGATCTGTCAAAGTGT 60.322 45.833 5.18 0.00 0.00 3.55
201 202 4.180057 GGTCTGCTAGATCTGTCAAAGTG 58.820 47.826 5.18 0.00 0.00 3.16
202 203 3.119316 CGGTCTGCTAGATCTGTCAAAGT 60.119 47.826 5.18 0.00 0.00 2.66
203 204 3.443037 CGGTCTGCTAGATCTGTCAAAG 58.557 50.000 5.18 0.00 0.00 2.77
204 205 2.417379 GCGGTCTGCTAGATCTGTCAAA 60.417 50.000 5.18 0.00 41.73 2.69
205 206 1.135139 GCGGTCTGCTAGATCTGTCAA 59.865 52.381 5.18 0.00 41.73 3.18
206 207 0.741326 GCGGTCTGCTAGATCTGTCA 59.259 55.000 5.18 2.00 41.73 3.58
207 208 0.031449 GGCGGTCTGCTAGATCTGTC 59.969 60.000 5.18 0.00 45.43 3.51
208 209 1.395826 GGGCGGTCTGCTAGATCTGT 61.396 60.000 5.18 0.00 45.43 3.41
209 210 1.365633 GGGCGGTCTGCTAGATCTG 59.634 63.158 5.18 0.00 45.43 2.90
210 211 0.687757 TTGGGCGGTCTGCTAGATCT 60.688 55.000 3.10 0.00 45.43 2.75
211 212 0.530870 GTTGGGCGGTCTGCTAGATC 60.531 60.000 3.10 0.00 45.43 2.75
212 213 1.522569 GTTGGGCGGTCTGCTAGAT 59.477 57.895 3.10 0.00 45.43 1.98
213 214 2.656069 GGTTGGGCGGTCTGCTAGA 61.656 63.158 3.10 0.00 45.43 2.43
214 215 2.125106 GGTTGGGCGGTCTGCTAG 60.125 66.667 3.10 0.00 45.43 3.42
215 216 3.712907 GGGTTGGGCGGTCTGCTA 61.713 66.667 3.10 0.00 45.43 3.49
218 219 4.760047 CGAGGGTTGGGCGGTCTG 62.760 72.222 0.00 0.00 0.00 3.51
236 238 6.027749 GCTTGTATTTTTGGTTATCCACGAG 58.972 40.000 0.00 0.00 44.22 4.18
303 307 6.012658 TCAAGATAACAAAACTGGACATGC 57.987 37.500 0.00 0.00 0.00 4.06
419 423 6.683974 TGACTTTTGGTTCAGAGAAAGAAG 57.316 37.500 0.00 0.00 34.20 2.85
497 501 1.812235 GCGTGATATGATGATGGCCA 58.188 50.000 8.56 8.56 0.00 5.36
569 603 4.783242 ACGTGAACATGCTACACATTTTC 58.217 39.130 14.56 0.00 43.07 2.29
695 729 0.179018 AGCAACCAGAACCTGTGGAC 60.179 55.000 0.00 0.00 38.57 4.02
714 748 4.853276 TCTCCCCTCCCTTTGTATTACAAA 59.147 41.667 18.39 18.39 44.91 2.83
716 750 3.778629 GTCTCCCCTCCCTTTGTATTACA 59.221 47.826 0.00 0.00 0.00 2.41
717 751 3.136077 GGTCTCCCCTCCCTTTGTATTAC 59.864 52.174 0.00 0.00 0.00 1.89
718 752 3.390819 GGTCTCCCCTCCCTTTGTATTA 58.609 50.000 0.00 0.00 0.00 0.98
719 753 2.206223 GGTCTCCCCTCCCTTTGTATT 58.794 52.381 0.00 0.00 0.00 1.89
720 754 1.894699 GGTCTCCCCTCCCTTTGTAT 58.105 55.000 0.00 0.00 0.00 2.29
721 755 3.411875 GGTCTCCCCTCCCTTTGTA 57.588 57.895 0.00 0.00 0.00 2.41
722 756 4.252493 GGTCTCCCCTCCCTTTGT 57.748 61.111 0.00 0.00 0.00 2.83
731 765 3.890756 TTTTTACGAAAAAGGGTCTCCCC 59.109 43.478 0.71 0.00 39.29 4.81
732 766 4.261741 GGTTTTTACGAAAAAGGGTCTCCC 60.262 45.833 0.00 0.00 40.71 4.30
733 767 4.555313 CGGTTTTTACGAAAAAGGGTCTCC 60.555 45.833 0.00 0.00 40.71 3.71
734 768 4.530388 CGGTTTTTACGAAAAAGGGTCTC 58.470 43.478 0.00 0.00 40.71 3.36
735 769 3.316029 CCGGTTTTTACGAAAAAGGGTCT 59.684 43.478 0.00 0.00 40.71 3.85
736 770 3.314913 TCCGGTTTTTACGAAAAAGGGTC 59.685 43.478 0.00 4.32 40.71 4.46
737 771 3.066621 GTCCGGTTTTTACGAAAAAGGGT 59.933 43.478 0.00 0.00 40.71 4.34
738 772 3.631144 GTCCGGTTTTTACGAAAAAGGG 58.369 45.455 0.00 3.45 40.71 3.95
739 773 3.290748 CGTCCGGTTTTTACGAAAAAGG 58.709 45.455 6.79 0.00 40.71 3.11
740 774 2.715491 GCGTCCGGTTTTTACGAAAAAG 59.285 45.455 15.97 0.00 40.71 2.27
741 775 2.096496 TGCGTCCGGTTTTTACGAAAAA 59.904 40.909 15.97 0.00 38.89 1.94
742 776 1.667724 TGCGTCCGGTTTTTACGAAAA 59.332 42.857 15.97 0.00 38.89 2.29
743 777 1.261089 CTGCGTCCGGTTTTTACGAAA 59.739 47.619 15.97 3.11 38.89 3.46
744 778 0.860533 CTGCGTCCGGTTTTTACGAA 59.139 50.000 15.97 5.00 38.89 3.85
745 779 0.249405 ACTGCGTCCGGTTTTTACGA 60.249 50.000 15.97 1.66 38.89 3.43
746 780 0.111001 CACTGCGTCCGGTTTTTACG 60.111 55.000 8.18 8.18 39.55 3.18
747 781 1.193874 CTCACTGCGTCCGGTTTTTAC 59.806 52.381 0.00 0.00 0.00 2.01
748 782 1.202557 ACTCACTGCGTCCGGTTTTTA 60.203 47.619 0.00 0.00 0.00 1.52
758 792 0.667487 CGTGGAATCACTCACTGCGT 60.667 55.000 0.00 0.00 41.53 5.24
763 797 1.068474 CGGTTCGTGGAATCACTCAC 58.932 55.000 0.00 0.00 41.53 3.51
791 825 4.083110 ACCATGATTTTTCAGTGCTCGAAG 60.083 41.667 0.00 0.00 0.00 3.79
849 883 1.450312 GGTCCGTTGGATGGCTCTG 60.450 63.158 0.00 0.00 32.73 3.35
864 898 2.726822 AAAGTGGTCCGGCGAAGGTC 62.727 60.000 9.30 0.00 0.00 3.85
865 899 2.814835 AAAGTGGTCCGGCGAAGGT 61.815 57.895 9.30 0.00 0.00 3.50
867 901 2.325082 CCAAAGTGGTCCGGCGAAG 61.325 63.158 9.30 0.00 31.35 3.79
890 928 2.280119 GCCCACTCGCATCGCATA 60.280 61.111 0.00 0.00 0.00 3.14
911 949 2.097825 CCTTGGGCATCTCTTCCTTTG 58.902 52.381 0.00 0.00 0.00 2.77
1131 1178 6.238374 CCTGGCGAATACATTTCGAGTTAAAT 60.238 38.462 11.54 0.00 43.97 1.40
1146 1193 2.812499 GCTCGACCCTGGCGAATA 59.188 61.111 0.00 0.00 37.32 1.75
1172 1219 0.164647 GCAGTGCGAGCAACTAACTG 59.835 55.000 0.00 3.89 40.93 3.16
1298 1349 1.555477 CCTAAGCCCACCACCCGTAA 61.555 60.000 0.00 0.00 0.00 3.18
1327 1378 4.123688 GCTAATTGCTCACAGCCGACTG 62.124 54.545 0.00 0.00 41.51 3.51
1473 1528 4.569943 ACTAGAGTTGACGTCGTAACCTA 58.430 43.478 11.62 12.05 0.00 3.08
1476 1531 5.682862 TGAAAACTAGAGTTGACGTCGTAAC 59.317 40.000 11.62 10.71 38.44 2.50
1481 1536 6.074249 CCTCTTTGAAAACTAGAGTTGACGTC 60.074 42.308 9.11 9.11 38.44 4.34
1493 1553 6.408092 GGAAATCCAAACCCTCTTTGAAAACT 60.408 38.462 0.00 0.00 35.64 2.66
1498 1558 4.151883 CTGGAAATCCAAACCCTCTTTGA 58.848 43.478 3.35 0.00 46.97 2.69
1730 1833 0.660005 CACTCTGCGCGCTAGAGATC 60.660 60.000 40.89 15.91 43.41 2.75
1779 1886 3.307242 GCGTGCAGGTGAGAACTAATTAG 59.693 47.826 11.05 11.05 0.00 1.73
1968 2079 3.847780 AGGCAGGGTTTTACTACATACCA 59.152 43.478 0.00 0.00 32.20 3.25
1973 2084 3.844211 AGATGAGGCAGGGTTTTACTACA 59.156 43.478 0.00 0.00 0.00 2.74
1977 2088 3.350219 TGAGATGAGGCAGGGTTTTAC 57.650 47.619 0.00 0.00 0.00 2.01
1978 2089 3.371917 CCATGAGATGAGGCAGGGTTTTA 60.372 47.826 0.00 0.00 31.70 1.52
2021 2198 5.010282 GGGACCAACAATGAATCAAGTACT 58.990 41.667 0.00 0.00 0.00 2.73
2027 2204 3.074390 AGTGAGGGACCAACAATGAATCA 59.926 43.478 0.00 0.00 0.00 2.57
2028 2205 3.690460 AGTGAGGGACCAACAATGAATC 58.310 45.455 0.00 0.00 0.00 2.52
2032 2209 2.038952 TCAGAGTGAGGGACCAACAATG 59.961 50.000 0.00 0.00 0.00 2.82
2055 2239 1.009222 CGGCGTCGGTACATACTCC 60.009 63.158 0.00 0.00 0.00 3.85
2056 2240 0.590195 ATCGGCGTCGGTACATACTC 59.410 55.000 10.62 0.00 36.95 2.59
2061 2245 2.179767 CACATCGGCGTCGGTACA 59.820 61.111 10.62 0.00 36.95 2.90
2349 2537 2.034179 CCCGACGATGTTAGCATACTGA 59.966 50.000 0.00 0.00 35.07 3.41
2400 2588 0.464916 TGATGGCGAGCATGCTGATT 60.465 50.000 28.27 0.00 34.52 2.57
2893 3234 4.210304 GCGCGCTTCATGACCGTC 62.210 66.667 26.67 7.63 0.00 4.79
3151 3492 1.433053 CGCTGGTGACAAACGTGGAA 61.433 55.000 0.00 0.00 42.06 3.53
3415 3759 2.515071 GGAGATGGCGAGGCATCCT 61.515 63.158 28.37 18.77 36.03 3.24
3464 3808 3.516578 CCTTGAGGTCGGACTTGAC 57.483 57.895 8.23 0.00 38.17 3.18
3511 3855 0.443869 GTGCGTGCACGATCTGAAAT 59.556 50.000 41.19 0.00 43.02 2.17
3540 3885 4.844349 TTCTTGAATCCTACCCCTTGAG 57.156 45.455 0.00 0.00 0.00 3.02
3547 3902 8.809468 ATAACTTCCTTTTCTTGAATCCTACC 57.191 34.615 0.00 0.00 0.00 3.18
3564 3919 5.208463 TGTTTGAAAGGCCAATAACTTCC 57.792 39.130 5.01 0.00 0.00 3.46
3588 3943 6.331042 TCCATCCAGGATGTATCTTCTTTGAT 59.669 38.462 25.35 0.00 43.07 2.57
3633 3989 7.707035 GTCTTATCATACACTGTTTCGGAATCT 59.293 37.037 0.00 0.00 0.00 2.40
3634 3990 7.707035 AGTCTTATCATACACTGTTTCGGAATC 59.293 37.037 0.00 0.00 0.00 2.52
3635 3991 7.556844 AGTCTTATCATACACTGTTTCGGAAT 58.443 34.615 0.00 0.00 0.00 3.01
3636 3992 6.931838 AGTCTTATCATACACTGTTTCGGAA 58.068 36.000 0.00 0.00 0.00 4.30
3637 3993 6.525578 AGTCTTATCATACACTGTTTCGGA 57.474 37.500 0.00 0.00 0.00 4.55
3638 3994 7.974501 AGTTAGTCTTATCATACACTGTTTCGG 59.025 37.037 0.00 0.00 0.00 4.30
3639 3995 8.912787 AGTTAGTCTTATCATACACTGTTTCG 57.087 34.615 0.00 0.00 0.00 3.46
3700 4056 9.805204 ACCCAGATAATATACCTATCAGGAATT 57.195 33.333 13.03 0.00 37.67 2.17
3701 4057 9.218525 CACCCAGATAATATACCTATCAGGAAT 57.781 37.037 13.03 3.31 37.67 3.01
3702 4058 8.406643 TCACCCAGATAATATACCTATCAGGAA 58.593 37.037 13.03 4.29 37.67 3.36
3703 4059 7.950803 TCACCCAGATAATATACCTATCAGGA 58.049 38.462 13.03 0.00 37.67 3.86
3704 4060 8.646004 CATCACCCAGATAATATACCTATCAGG 58.354 40.741 7.60 7.60 36.90 3.86
3705 4061 8.147058 GCATCACCCAGATAATATACCTATCAG 58.853 40.741 6.49 0.21 34.43 2.90
3706 4062 7.623278 TGCATCACCCAGATAATATACCTATCA 59.377 37.037 6.49 0.00 34.43 2.15
3707 4063 8.023021 TGCATCACCCAGATAATATACCTATC 57.977 38.462 0.00 0.00 34.43 2.08
3708 4064 7.846311 TCTGCATCACCCAGATAATATACCTAT 59.154 37.037 0.00 0.00 34.59 2.57
3709 4065 7.124298 GTCTGCATCACCCAGATAATATACCTA 59.876 40.741 0.00 0.00 41.01 3.08
3710 4066 6.025539 TCTGCATCACCCAGATAATATACCT 58.974 40.000 0.00 0.00 34.59 3.08
3711 4067 6.070538 AGTCTGCATCACCCAGATAATATACC 60.071 42.308 0.00 0.00 41.01 2.73
3712 4068 6.815641 CAGTCTGCATCACCCAGATAATATAC 59.184 42.308 0.00 0.00 41.01 1.47
3713 4069 6.498303 ACAGTCTGCATCACCCAGATAATATA 59.502 38.462 0.00 0.00 41.01 0.86
3714 4070 5.309020 ACAGTCTGCATCACCCAGATAATAT 59.691 40.000 0.00 0.00 41.01 1.28
3715 4071 4.655649 ACAGTCTGCATCACCCAGATAATA 59.344 41.667 0.00 0.00 41.01 0.98
3716 4072 3.457380 ACAGTCTGCATCACCCAGATAAT 59.543 43.478 0.00 0.00 41.01 1.28
3717 4073 2.840038 ACAGTCTGCATCACCCAGATAA 59.160 45.455 0.00 0.00 41.01 1.75
3718 4074 2.470990 ACAGTCTGCATCACCCAGATA 58.529 47.619 0.00 0.00 41.01 1.98
3719 4075 1.283347 ACAGTCTGCATCACCCAGAT 58.717 50.000 0.00 0.00 41.01 2.90
3720 4076 1.937191 TACAGTCTGCATCACCCAGA 58.063 50.000 0.00 0.00 37.01 3.86
3721 4077 2.027745 AGTTACAGTCTGCATCACCCAG 60.028 50.000 0.00 0.00 0.00 4.45
3722 4078 1.977854 AGTTACAGTCTGCATCACCCA 59.022 47.619 0.00 0.00 0.00 4.51
3723 4079 2.770164 AGTTACAGTCTGCATCACCC 57.230 50.000 0.00 0.00 0.00 4.61
3724 4080 3.681897 CAGAAGTTACAGTCTGCATCACC 59.318 47.826 0.00 0.00 35.23 4.02
3725 4081 3.681897 CCAGAAGTTACAGTCTGCATCAC 59.318 47.826 9.64 0.00 40.01 3.06
3726 4082 3.324846 ACCAGAAGTTACAGTCTGCATCA 59.675 43.478 9.64 0.00 40.01 3.07
3727 4083 3.931578 ACCAGAAGTTACAGTCTGCATC 58.068 45.455 9.64 0.00 40.01 3.91
3728 4084 5.483685 TTACCAGAAGTTACAGTCTGCAT 57.516 39.130 9.64 4.36 40.01 3.96
3729 4085 4.948341 TTACCAGAAGTTACAGTCTGCA 57.052 40.909 9.64 0.00 40.01 4.41
3730 4086 5.298347 ACTTTACCAGAAGTTACAGTCTGC 58.702 41.667 9.64 0.00 40.01 4.26
3731 4087 6.586844 GCTACTTTACCAGAAGTTACAGTCTG 59.413 42.308 8.52 8.52 40.24 3.51
3732 4088 6.494146 AGCTACTTTACCAGAAGTTACAGTCT 59.506 38.462 0.00 0.00 40.24 3.24
3733 4089 6.586844 CAGCTACTTTACCAGAAGTTACAGTC 59.413 42.308 0.00 0.00 40.24 3.51
3734 4090 6.041751 ACAGCTACTTTACCAGAAGTTACAGT 59.958 38.462 0.00 0.00 40.24 3.55
3735 4091 6.456501 ACAGCTACTTTACCAGAAGTTACAG 58.543 40.000 0.00 0.00 40.24 2.74
3736 4092 6.415206 ACAGCTACTTTACCAGAAGTTACA 57.585 37.500 0.00 0.00 40.24 2.41
3737 4093 8.870879 CATTACAGCTACTTTACCAGAAGTTAC 58.129 37.037 0.00 0.00 40.24 2.50
3738 4094 8.038944 CCATTACAGCTACTTTACCAGAAGTTA 58.961 37.037 0.00 0.00 40.24 2.24
3739 4095 6.879458 CCATTACAGCTACTTTACCAGAAGTT 59.121 38.462 0.00 0.00 40.24 2.66
3740 4096 6.013639 ACCATTACAGCTACTTTACCAGAAGT 60.014 38.462 0.00 0.00 42.27 3.01
3741 4097 6.407202 ACCATTACAGCTACTTTACCAGAAG 58.593 40.000 0.00 0.00 0.00 2.85
3742 4098 6.014070 TGACCATTACAGCTACTTTACCAGAA 60.014 38.462 0.00 0.00 0.00 3.02
3743 4099 5.482526 TGACCATTACAGCTACTTTACCAGA 59.517 40.000 0.00 0.00 0.00 3.86
3744 4100 5.730550 TGACCATTACAGCTACTTTACCAG 58.269 41.667 0.00 0.00 0.00 4.00
3745 4101 5.748670 TGACCATTACAGCTACTTTACCA 57.251 39.130 0.00 0.00 0.00 3.25
3746 4102 6.821665 TCATTGACCATTACAGCTACTTTACC 59.178 38.462 0.00 0.00 0.00 2.85
3747 4103 7.685594 GTCATTGACCATTACAGCTACTTTAC 58.314 38.462 5.44 0.00 0.00 2.01
3748 4104 7.843490 GTCATTGACCATTACAGCTACTTTA 57.157 36.000 5.44 0.00 0.00 1.85
3749 4105 6.743575 GTCATTGACCATTACAGCTACTTT 57.256 37.500 5.44 0.00 0.00 2.66
3813 4169 6.780457 CCTATCTGGTCATTGTCCATTTTT 57.220 37.500 3.03 0.00 34.26 1.94
3841 4197 4.914177 ATCCGGTTGTAGTAGGGAAAAA 57.086 40.909 0.00 0.00 0.00 1.94
3842 4198 5.662208 TCATATCCGGTTGTAGTAGGGAAAA 59.338 40.000 0.00 0.00 0.00 2.29
3843 4199 5.069516 GTCATATCCGGTTGTAGTAGGGAAA 59.930 44.000 0.00 0.00 0.00 3.13
3844 4200 4.586001 GTCATATCCGGTTGTAGTAGGGAA 59.414 45.833 0.00 0.00 0.00 3.97
3845 4201 4.147321 GTCATATCCGGTTGTAGTAGGGA 58.853 47.826 0.00 0.00 0.00 4.20
3846 4202 3.893200 TGTCATATCCGGTTGTAGTAGGG 59.107 47.826 0.00 0.00 0.00 3.53
3847 4203 5.524971 TTGTCATATCCGGTTGTAGTAGG 57.475 43.478 0.00 0.00 0.00 3.18
3848 4204 9.140286 CATATTTGTCATATCCGGTTGTAGTAG 57.860 37.037 0.00 0.00 0.00 2.57
3849 4205 8.092068 CCATATTTGTCATATCCGGTTGTAGTA 58.908 37.037 0.00 0.00 0.00 1.82
3850 4206 6.934645 CCATATTTGTCATATCCGGTTGTAGT 59.065 38.462 0.00 0.00 0.00 2.73
3856 4212 3.561313 GGGCCATATTTGTCATATCCGGT 60.561 47.826 4.39 0.00 0.00 5.28
3860 4216 6.568462 CGTTTGAGGGCCATATTTGTCATATC 60.568 42.308 6.18 0.00 0.00 1.63
3865 4221 2.479560 GCGTTTGAGGGCCATATTTGTC 60.480 50.000 6.18 0.00 0.00 3.18
3912 4269 0.032130 GAGTGCTCGTTCACTGTCCA 59.968 55.000 14.92 0.00 46.40 4.02
3915 4272 0.315568 GAGGAGTGCTCGTTCACTGT 59.684 55.000 14.92 4.63 46.40 3.55
3922 4279 2.839486 TTGATTTGAGGAGTGCTCGT 57.161 45.000 7.20 0.00 0.00 4.18
3925 4282 7.286087 TGCAATTATATTGATTTGAGGAGTGCT 59.714 33.333 3.70 0.00 0.00 4.40
3942 4299 5.482163 TGAGATGTCCGGATGCAATTATA 57.518 39.130 7.81 0.00 0.00 0.98
3944 4301 3.836365 TGAGATGTCCGGATGCAATTA 57.164 42.857 7.81 0.00 0.00 1.40
3947 4304 2.700371 AGTATGAGATGTCCGGATGCAA 59.300 45.455 7.81 0.00 0.00 4.08
3976 4333 7.385267 AGTTTGCATGCTTTTGTATGGATTTA 58.615 30.769 20.33 0.00 41.66 1.40
4067 4433 2.452937 GGAGGAGGCCCATGTACCC 61.453 68.421 0.00 0.00 33.88 3.69
4069 4435 1.411651 GGAGGAGGAGGCCCATGTAC 61.412 65.000 0.00 0.00 33.88 2.90
4070 4436 1.074471 GGAGGAGGAGGCCCATGTA 60.074 63.158 0.00 0.00 33.88 2.29
4071 4437 2.367512 GGAGGAGGAGGCCCATGT 60.368 66.667 0.00 0.00 33.88 3.21
4073 4439 1.007238 TAGAGGAGGAGGAGGCCCAT 61.007 60.000 0.00 0.00 33.88 4.00
4074 4440 1.007238 ATAGAGGAGGAGGAGGCCCA 61.007 60.000 0.00 0.00 33.88 5.36
4075 4441 0.252057 GATAGAGGAGGAGGAGGCCC 60.252 65.000 0.00 0.00 0.00 5.80
4100 4489 2.153322 GCTCTTCGCCGAACTCGAC 61.153 63.158 0.00 0.00 43.02 4.20
4126 4515 2.342648 GGTAGGAATAGGCGGCGG 59.657 66.667 9.78 0.00 0.00 6.13
4141 4530 2.147387 AACTGGCAGTTCCTCCGGT 61.147 57.895 26.54 2.42 43.45 5.28
4280 4669 0.035056 TAGGAGGAAGCAAAGCAGCC 60.035 55.000 0.00 0.00 34.23 4.85
4284 4673 1.740718 CGGAGTAGGAGGAAGCAAAGC 60.741 57.143 0.00 0.00 0.00 3.51
4287 4676 0.040646 TCCGGAGTAGGAGGAAGCAA 59.959 55.000 0.00 0.00 34.92 3.91
4288 4677 0.261991 ATCCGGAGTAGGAGGAAGCA 59.738 55.000 11.34 0.00 44.55 3.91
4291 4680 0.178998 CGGATCCGGAGTAGGAGGAA 60.179 60.000 26.95 0.00 44.55 3.36
4299 4688 4.779733 AGGTGGCGGATCCGGAGT 62.780 66.667 33.98 0.00 40.19 3.85
4334 4723 1.625565 AGGAGGAGGAGGGAGAGCT 60.626 63.158 0.00 0.00 0.00 4.09
4391 4780 4.394712 CGGGCTGCCTTCGGACTT 62.395 66.667 19.68 0.00 0.00 3.01
4441 4830 0.594110 GGAGGTAGATCGCGGAGAAG 59.406 60.000 6.13 0.00 0.00 2.85
4443 4832 1.597302 CGGAGGTAGATCGCGGAGA 60.597 63.158 6.13 0.00 0.00 3.71
4468 4857 2.973879 CACGTACGCTATACTCATGCTG 59.026 50.000 16.72 0.00 0.00 4.41
4469 4858 2.031069 CCACGTACGCTATACTCATGCT 60.031 50.000 16.72 0.00 0.00 3.79
4472 4861 3.208594 TCACCACGTACGCTATACTCAT 58.791 45.455 16.72 0.00 0.00 2.90
4477 4866 2.031420 GCTGATCACCACGTACGCTATA 60.031 50.000 16.72 0.00 0.00 1.31


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.