Multiple sequence alignment - TraesCS3B01G441000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G441000 chr3B 100.000 2913 0 0 1 2913 680428059 680425147 0.000000 5380.0
1 TraesCS3B01G441000 chr3A 91.813 2455 121 38 498 2913 652023398 652025811 0.000000 3347.0
2 TraesCS3B01G441000 chr3A 91.749 509 21 14 1 504 652022847 652023339 0.000000 688.0
3 TraesCS3B01G441000 chr3D 91.395 2150 111 41 820 2913 516876664 516878795 0.000000 2878.0
4 TraesCS3B01G441000 chr6D 95.122 41 1 1 1319 1358 132775241 132775281 0.000002 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G441000 chr3B 680425147 680428059 2912 True 5380.0 5380 100.000 1 2913 1 chr3B.!!$R1 2912
1 TraesCS3B01G441000 chr3A 652022847 652025811 2964 False 2017.5 3347 91.781 1 2913 2 chr3A.!!$F1 2912
2 TraesCS3B01G441000 chr3D 516876664 516878795 2131 False 2878.0 2878 91.395 820 2913 1 chr3D.!!$F1 2093

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
676 749 0.036388 TCACCTGAGACATTTCGCCC 60.036 55.0 0.0 0.0 0.0 6.13 F
1605 1692 0.103937 CCATTCTCTCGCCACTCTCC 59.896 60.0 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1756 1847 0.250858 TTCAGGTGGTGGCTGATGTG 60.251 55.000 0.0 0.0 0.00 3.21 R
2758 2913 1.079819 CCAAGACGCAGACGATGGT 60.080 57.895 0.0 0.0 43.93 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.288458 GGAGTCCTCGATCTACACTTCG 59.712 54.545 0.41 0.00 36.72 3.79
261 263 9.179909 TCTGAAAGGTGTGTAAACATTTCTTAA 57.820 29.630 12.01 0.00 46.05 1.85
268 270 8.132362 GGTGTGTAAACATTTCTTAACACATGA 58.868 33.333 11.83 0.00 38.68 3.07
507 512 8.736244 TCCTCTTTTTACATTATTTTTCTCCGG 58.264 33.333 0.00 0.00 0.00 5.14
526 596 6.544564 TCTCCGGAATTCTAGTTTTTGTGTTT 59.455 34.615 5.23 0.00 0.00 2.83
535 605 7.575414 TCTAGTTTTTGTGTTTTATGCTCCA 57.425 32.000 0.00 0.00 0.00 3.86
539 609 6.756542 AGTTTTTGTGTTTTATGCTCCAGTTC 59.243 34.615 0.00 0.00 0.00 3.01
540 610 4.846779 TTGTGTTTTATGCTCCAGTTCC 57.153 40.909 0.00 0.00 0.00 3.62
541 611 4.098914 TGTGTTTTATGCTCCAGTTCCT 57.901 40.909 0.00 0.00 0.00 3.36
542 612 4.469657 TGTGTTTTATGCTCCAGTTCCTT 58.530 39.130 0.00 0.00 0.00 3.36
565 635 2.145536 GCCTTGCTTTGGGTTTTCATG 58.854 47.619 0.00 0.00 0.00 3.07
676 749 0.036388 TCACCTGAGACATTTCGCCC 60.036 55.000 0.00 0.00 0.00 6.13
716 789 5.931441 TTTTACCCCGCAAAATGAAAATG 57.069 34.783 0.00 0.00 0.00 2.32
755 828 4.586421 GTGTACCCCTACCTAGTGATTACC 59.414 50.000 0.00 0.00 0.00 2.85
757 830 4.357313 ACCCCTACCTAGTGATTACCAA 57.643 45.455 0.00 0.00 0.00 3.67
764 837 7.343833 CCCTACCTAGTGATTACCAAACTTCTA 59.656 40.741 0.00 0.00 0.00 2.10
791 864 8.621532 ACTCTGTTATCAGTTTCAGCAATAAA 57.378 30.769 0.83 0.00 41.91 1.40
800 873 6.646240 TCAGTTTCAGCAATAAAATTTGGAGC 59.354 34.615 0.00 0.00 0.00 4.70
811 884 5.774498 AAAATTTGGAGCGAGAACTCTTT 57.226 34.783 0.00 0.00 36.87 2.52
922 996 1.301954 GGTTACCTTCCCGCCACAT 59.698 57.895 0.00 0.00 0.00 3.21
1296 1382 2.027003 ACTACTTCCTCGACCTCTCG 57.973 55.000 0.00 0.00 41.65 4.04
1405 1491 0.594796 CCTTTCGCCGCCATTAATGC 60.595 55.000 10.11 5.03 0.00 3.56
1433 1520 3.067461 GCTCTGCTTAGCTTAGCTGACTA 59.933 47.826 24.72 9.86 42.05 2.59
1434 1521 4.261994 GCTCTGCTTAGCTTAGCTGACTAT 60.262 45.833 24.72 0.00 42.05 2.12
1539 1626 4.031129 CTCAGCCTGCTGCACCCT 62.031 66.667 14.22 0.00 44.83 4.34
1605 1692 0.103937 CCATTCTCTCGCCACTCTCC 59.896 60.000 0.00 0.00 0.00 3.71
1606 1693 0.820226 CATTCTCTCGCCACTCTCCA 59.180 55.000 0.00 0.00 0.00 3.86
1614 1701 2.617274 GCCACTCTCCAACGTTGCC 61.617 63.158 22.93 0.00 0.00 4.52
1636 1723 0.319900 TCGGCTCTGCTGTTTCTCAC 60.320 55.000 0.00 0.00 36.18 3.51
1641 1732 2.213499 CTCTGCTGTTTCTCACCGTTT 58.787 47.619 0.00 0.00 0.00 3.60
1643 1734 2.354510 TCTGCTGTTTCTCACCGTTTTG 59.645 45.455 0.00 0.00 0.00 2.44
1646 1737 1.676006 CTGTTTCTCACCGTTTTGGCT 59.324 47.619 0.00 0.00 43.94 4.75
1759 1850 2.663520 CGGCAACTGGTACGCACA 60.664 61.111 0.00 0.00 0.00 4.57
1763 1854 0.443869 GCAACTGGTACGCACATCAG 59.556 55.000 0.00 0.00 0.00 2.90
1764 1855 0.443869 CAACTGGTACGCACATCAGC 59.556 55.000 0.00 0.00 0.00 4.26
1766 1857 1.079197 CTGGTACGCACATCAGCCA 60.079 57.895 0.00 0.00 0.00 4.75
1776 1867 0.478072 ACATCAGCCACCACCTGAAA 59.522 50.000 0.00 0.00 42.12 2.69
1783 1874 1.826385 CCACCACCTGAAATCTCACC 58.174 55.000 0.00 0.00 0.00 4.02
1784 1875 1.614317 CCACCACCTGAAATCTCACCC 60.614 57.143 0.00 0.00 0.00 4.61
1787 1878 2.176798 ACCACCTGAAATCTCACCCAAA 59.823 45.455 0.00 0.00 0.00 3.28
1789 1880 4.044065 ACCACCTGAAATCTCACCCAAATA 59.956 41.667 0.00 0.00 0.00 1.40
1790 1881 4.399303 CCACCTGAAATCTCACCCAAATAC 59.601 45.833 0.00 0.00 0.00 1.89
1791 1882 4.094887 CACCTGAAATCTCACCCAAATACG 59.905 45.833 0.00 0.00 0.00 3.06
1792 1883 4.261801 CCTGAAATCTCACCCAAATACGT 58.738 43.478 0.00 0.00 0.00 3.57
1793 1884 5.046159 ACCTGAAATCTCACCCAAATACGTA 60.046 40.000 0.00 0.00 0.00 3.57
1794 1885 5.293569 CCTGAAATCTCACCCAAATACGTAC 59.706 44.000 0.00 0.00 0.00 3.67
1795 1886 4.865925 TGAAATCTCACCCAAATACGTACG 59.134 41.667 15.01 15.01 0.00 3.67
1796 1887 4.460948 AATCTCACCCAAATACGTACGT 57.539 40.909 25.98 25.98 0.00 3.57
1797 1888 5.581126 AATCTCACCCAAATACGTACGTA 57.419 39.130 28.62 28.62 34.87 3.57
1798 1889 4.355543 TCTCACCCAAATACGTACGTAC 57.644 45.455 28.99 15.90 33.01 3.67
1818 1930 3.399330 ACACCAGAACCTGTGAATAACG 58.601 45.455 0.00 0.00 0.00 3.18
1974 2086 5.450550 GCCTTACACTCTGTTTTCAGCTTTT 60.451 40.000 0.00 0.00 46.59 2.27
1975 2087 5.973565 CCTTACACTCTGTTTTCAGCTTTTG 59.026 40.000 0.00 0.00 46.59 2.44
1976 2088 6.404734 CCTTACACTCTGTTTTCAGCTTTTGT 60.405 38.462 0.00 0.00 46.59 2.83
1977 2089 7.201696 CCTTACACTCTGTTTTCAGCTTTTGTA 60.202 37.037 0.00 0.00 46.59 2.41
1978 2090 5.880341 ACACTCTGTTTTCAGCTTTTGTAC 58.120 37.500 0.00 0.00 46.59 2.90
1979 2091 5.648092 ACACTCTGTTTTCAGCTTTTGTACT 59.352 36.000 0.00 0.00 46.59 2.73
1982 2094 8.181573 CACTCTGTTTTCAGCTTTTGTACTAAA 58.818 33.333 2.54 2.54 46.59 1.85
2021 2137 9.673454 GTACATACGTATACATTTGACATCTGA 57.327 33.333 7.96 0.00 0.00 3.27
2023 2139 7.382488 ACATACGTATACATTTGACATCTGAGC 59.618 37.037 7.96 0.00 0.00 4.26
2024 2140 5.907207 ACGTATACATTTGACATCTGAGCT 58.093 37.500 3.32 0.00 0.00 4.09
2025 2141 5.750547 ACGTATACATTTGACATCTGAGCTG 59.249 40.000 3.32 0.00 0.00 4.24
2026 2142 5.176406 CGTATACATTTGACATCTGAGCTGG 59.824 44.000 3.32 0.00 0.00 4.85
2027 2143 3.708403 ACATTTGACATCTGAGCTGGA 57.292 42.857 0.00 0.00 0.00 3.86
2052 2168 5.183228 TCGGTTAATTCCACAAGAGAATCC 58.817 41.667 0.00 0.00 32.80 3.01
2060 2176 2.611292 CCACAAGAGAATCCTCAATCGC 59.389 50.000 0.00 0.00 41.87 4.58
2067 2183 4.051922 GAGAATCCTCAATCGCGTAACAT 58.948 43.478 5.77 0.00 39.24 2.71
2127 2244 1.293963 GCAAGCTCACATGCGTCTCA 61.294 55.000 0.00 0.00 38.13 3.27
2129 2246 0.390866 AAGCTCACATGCGTCTCAGG 60.391 55.000 0.00 0.00 38.13 3.86
2134 2267 1.610673 ACATGCGTCTCAGGGAGGT 60.611 57.895 0.00 0.00 32.91 3.85
2371 2526 4.373116 GAGGCGGCGAAGGTCACA 62.373 66.667 12.98 0.00 0.00 3.58
2374 2529 2.332654 GGCGGCGAAGGTCACAAAT 61.333 57.895 12.98 0.00 0.00 2.32
2382 2537 1.686052 GAAGGTCACAAATGCCACCAA 59.314 47.619 4.65 0.00 0.00 3.67
2383 2538 1.039856 AGGTCACAAATGCCACCAAC 58.960 50.000 4.65 0.00 0.00 3.77
2758 2913 2.643272 GAGGTGTCGTCAGCGTCA 59.357 61.111 6.22 0.00 45.42 4.35
2767 2922 1.213013 GTCAGCGTCACCATCGTCT 59.787 57.895 0.00 0.00 0.00 4.18
2779 2934 0.667487 CATCGTCTGCGTCTTGGTGT 60.667 55.000 0.00 0.00 39.49 4.16
2809 2964 1.941209 GCGTCTTTGCTGGTCTGATCA 60.941 52.381 0.00 0.00 0.00 2.92
2812 2967 3.063180 CGTCTTTGCTGGTCTGATCAATC 59.937 47.826 0.00 0.00 0.00 2.67
2824 2979 4.871993 CTGATCAATCAGCACCTTGTAC 57.128 45.455 7.05 0.00 46.63 2.90
2836 2991 3.006967 GCACCTTGTACTCTTCTCCTTCA 59.993 47.826 0.00 0.00 0.00 3.02
2850 3005 1.282738 TCCTTCATGCTCAGCCATTGA 59.717 47.619 0.00 0.00 0.00 2.57
2898 3055 2.489971 TGTTGGGTTTGATGAGACGAC 58.510 47.619 0.00 0.00 0.00 4.34
2907 3064 4.594123 TTGATGAGACGACAAGGTTACA 57.406 40.909 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.945346 GAGGACTCCTCTTTCTTTTCCC 58.055 50.000 16.91 0.00 46.41 3.97
387 389 9.625747 ATGTTGTCAAAAAGGTTTGGAAAATAT 57.374 25.926 0.00 0.00 43.70 1.28
388 390 9.454859 AATGTTGTCAAAAAGGTTTGGAAAATA 57.545 25.926 0.00 0.00 43.70 1.40
482 487 8.736244 TCCGGAGAAAAATAATGTAAAAAGAGG 58.264 33.333 0.00 0.00 0.00 3.69
504 509 8.911662 CATAAAACACAAAAACTAGAATTCCGG 58.088 33.333 0.65 0.00 0.00 5.14
505 510 8.424731 GCATAAAACACAAAAACTAGAATTCCG 58.575 33.333 0.65 0.00 0.00 4.30
506 511 9.476202 AGCATAAAACACAAAAACTAGAATTCC 57.524 29.630 0.65 0.00 0.00 3.01
512 582 7.425606 ACTGGAGCATAAAACACAAAAACTAG 58.574 34.615 0.00 0.00 0.00 2.57
513 583 7.341445 ACTGGAGCATAAAACACAAAAACTA 57.659 32.000 0.00 0.00 0.00 2.24
519 589 4.469657 AGGAACTGGAGCATAAAACACAA 58.530 39.130 0.00 0.00 37.18 3.33
526 596 3.459598 AGGCATAAGGAACTGGAGCATAA 59.540 43.478 0.00 0.00 40.86 1.90
539 609 1.560505 ACCCAAAGCAAGGCATAAGG 58.439 50.000 0.00 0.00 0.00 2.69
540 610 3.683365 AAACCCAAAGCAAGGCATAAG 57.317 42.857 0.00 0.00 0.00 1.73
541 611 3.389329 TGAAAACCCAAAGCAAGGCATAA 59.611 39.130 0.00 0.00 0.00 1.90
542 612 2.968574 TGAAAACCCAAAGCAAGGCATA 59.031 40.909 0.00 0.00 0.00 3.14
598 668 4.436079 AGGGGTGAGAGGTTAGTACAAAT 58.564 43.478 0.00 0.00 0.00 2.32
599 669 3.865571 AGGGGTGAGAGGTTAGTACAAA 58.134 45.455 0.00 0.00 0.00 2.83
601 671 3.170717 CAAGGGGTGAGAGGTTAGTACA 58.829 50.000 0.00 0.00 0.00 2.90
602 672 2.500504 CCAAGGGGTGAGAGGTTAGTAC 59.499 54.545 0.00 0.00 0.00 2.73
603 673 2.384375 TCCAAGGGGTGAGAGGTTAGTA 59.616 50.000 0.00 0.00 34.93 1.82
604 674 1.151413 TCCAAGGGGTGAGAGGTTAGT 59.849 52.381 0.00 0.00 34.93 2.24
605 675 1.952621 TCCAAGGGGTGAGAGGTTAG 58.047 55.000 0.00 0.00 34.93 2.34
764 837 9.890629 TTATTGCTGAAACTGATAACAGAGTAT 57.109 29.630 7.05 0.00 46.03 2.12
791 864 5.107065 CGTAAAAGAGTTCTCGCTCCAAATT 60.107 40.000 0.00 0.00 36.20 1.82
798 871 2.295349 TGGTCGTAAAAGAGTTCTCGCT 59.705 45.455 0.00 0.00 0.00 4.93
800 873 4.046462 TGTTGGTCGTAAAAGAGTTCTCG 58.954 43.478 0.00 0.00 0.00 4.04
811 884 3.262151 TCCATCTTCCATGTTGGTCGTAA 59.738 43.478 0.00 0.00 39.03 3.18
934 1008 1.772063 GCGTGTGTGTGGGTTGAGTC 61.772 60.000 0.00 0.00 0.00 3.36
1128 1214 1.296715 GCCCACGAAGTCCATCAGT 59.703 57.895 0.00 0.00 41.61 3.41
1405 1491 0.108424 AAGCTAAGCAGAGCAGACGG 60.108 55.000 11.90 0.00 45.43 4.79
1572 1659 0.915364 GAATGGGAGAGACCTTGGCT 59.085 55.000 0.00 0.00 38.98 4.75
1614 1701 0.392193 AGAAACAGCAGAGCCGATGG 60.392 55.000 0.00 0.00 0.00 3.51
1636 1723 1.849829 GAAACGAACAAGCCAAAACGG 59.150 47.619 0.00 0.00 38.11 4.44
1641 1732 1.329292 CAGACGAAACGAACAAGCCAA 59.671 47.619 0.00 0.00 0.00 4.52
1643 1734 0.384353 GCAGACGAAACGAACAAGCC 60.384 55.000 0.00 0.00 0.00 4.35
1646 1737 0.934496 CCTGCAGACGAAACGAACAA 59.066 50.000 17.39 0.00 0.00 2.83
1756 1847 0.250858 TTCAGGTGGTGGCTGATGTG 60.251 55.000 0.00 0.00 0.00 3.21
1757 1848 0.478072 TTTCAGGTGGTGGCTGATGT 59.522 50.000 0.00 0.00 0.00 3.06
1758 1849 1.747355 GATTTCAGGTGGTGGCTGATG 59.253 52.381 0.00 0.00 0.00 3.07
1759 1850 1.637553 AGATTTCAGGTGGTGGCTGAT 59.362 47.619 0.00 0.00 0.00 2.90
1763 1854 1.168714 GTGAGATTTCAGGTGGTGGC 58.831 55.000 0.00 0.00 32.98 5.01
1764 1855 1.614317 GGGTGAGATTTCAGGTGGTGG 60.614 57.143 0.00 0.00 32.98 4.61
1766 1857 1.444933 TGGGTGAGATTTCAGGTGGT 58.555 50.000 0.00 0.00 32.98 4.16
1776 1867 4.398988 TGTACGTACGTATTTGGGTGAGAT 59.601 41.667 29.05 0.92 32.82 2.75
1783 1874 4.095410 TCTGGTGTACGTACGTATTTGG 57.905 45.455 29.05 17.94 32.82 3.28
1784 1875 4.324402 GGTTCTGGTGTACGTACGTATTTG 59.676 45.833 29.05 17.42 32.82 2.32
1787 1878 3.127548 CAGGTTCTGGTGTACGTACGTAT 59.872 47.826 29.05 7.54 32.82 3.06
1789 1880 1.267806 CAGGTTCTGGTGTACGTACGT 59.732 52.381 25.98 25.98 0.00 3.57
1790 1881 1.267806 ACAGGTTCTGGTGTACGTACG 59.732 52.381 20.18 15.01 35.51 3.67
1791 1882 2.294233 TCACAGGTTCTGGTGTACGTAC 59.706 50.000 18.90 18.90 35.51 3.67
1792 1883 2.585330 TCACAGGTTCTGGTGTACGTA 58.415 47.619 0.00 0.00 35.51 3.57
1793 1884 1.405872 TCACAGGTTCTGGTGTACGT 58.594 50.000 0.00 0.00 35.51 3.57
1794 1885 2.519377 TTCACAGGTTCTGGTGTACG 57.481 50.000 0.00 0.00 35.51 3.67
1795 1886 4.387862 CGTTATTCACAGGTTCTGGTGTAC 59.612 45.833 0.00 0.00 35.51 2.90
1796 1887 4.039488 ACGTTATTCACAGGTTCTGGTGTA 59.961 41.667 0.00 0.00 35.51 2.90
1797 1888 3.181458 ACGTTATTCACAGGTTCTGGTGT 60.181 43.478 0.00 0.00 35.51 4.16
1798 1889 3.399330 ACGTTATTCACAGGTTCTGGTG 58.601 45.455 0.00 0.00 35.51 4.17
1818 1930 3.611517 CATCAATCAAATCGGCTCGAAC 58.388 45.455 1.44 0.00 39.99 3.95
1933 2045 0.816018 GGCGAGAGATGAGACGAGGA 60.816 60.000 0.00 0.00 0.00 3.71
1974 2086 8.129496 TGTACATCATTGTCCTCTTTAGTACA 57.871 34.615 0.00 0.00 37.28 2.90
1977 2089 7.921214 CGTATGTACATCATTGTCCTCTTTAGT 59.079 37.037 12.68 0.00 37.28 2.24
1978 2090 7.921214 ACGTATGTACATCATTGTCCTCTTTAG 59.079 37.037 12.68 0.00 37.28 1.85
1979 2091 7.778083 ACGTATGTACATCATTGTCCTCTTTA 58.222 34.615 12.68 0.00 37.28 1.85
1982 2094 5.854010 ACGTATGTACATCATTGTCCTCT 57.146 39.130 12.68 0.00 37.28 3.69
1991 2107 9.974980 ATGTCAAATGTATACGTATGTACATCA 57.025 29.630 19.37 14.61 40.98 3.07
2021 2137 1.906574 TGGAATTAACCGAGTCCAGCT 59.093 47.619 0.00 0.00 38.74 4.24
2023 2139 3.328382 TGTGGAATTAACCGAGTCCAG 57.672 47.619 0.00 0.00 43.68 3.86
2024 2140 3.325425 TCTTGTGGAATTAACCGAGTCCA 59.675 43.478 0.00 0.00 41.12 4.02
2025 2141 3.933332 CTCTTGTGGAATTAACCGAGTCC 59.067 47.826 0.00 0.00 34.46 3.85
2026 2142 4.817517 TCTCTTGTGGAATTAACCGAGTC 58.182 43.478 0.00 0.00 0.00 3.36
2027 2143 4.884668 TCTCTTGTGGAATTAACCGAGT 57.115 40.909 0.00 0.00 0.00 4.18
2052 2168 4.840401 TGAAAGATGTTACGCGATTGAG 57.160 40.909 15.93 0.00 0.00 3.02
2067 2183 8.628630 TGTTGGATATGTGTATGTTTGAAAGA 57.371 30.769 0.00 0.00 0.00 2.52
2096 2212 7.532571 GCATGTGAGCTTGCATATATGATTTA 58.467 34.615 17.10 0.00 42.96 1.40
2127 2244 0.323908 CCTGAAGTCGAGACCTCCCT 60.324 60.000 0.00 0.00 0.00 4.20
2129 2246 0.612453 ACCCTGAAGTCGAGACCTCC 60.612 60.000 0.00 0.00 0.00 4.30
2134 2267 1.257743 CCTGAACCCTGAAGTCGAGA 58.742 55.000 0.00 0.00 0.00 4.04
2163 2296 1.810151 GCTGAACATTTTGGCGACCTA 59.190 47.619 0.00 0.00 0.00 3.08
2371 2526 1.577328 CGCTCTCGTTGGTGGCATTT 61.577 55.000 0.00 0.00 0.00 2.32
2383 2538 4.717629 TTCCACACCGCGCTCTCG 62.718 66.667 5.56 0.00 39.07 4.04
2710 2865 3.742983 GGTCATGAACCTCGTCCTC 57.257 57.895 0.00 0.00 45.45 3.71
2758 2913 1.079819 CCAAGACGCAGACGATGGT 60.080 57.895 0.00 0.00 43.93 3.55
2759 2914 1.079819 ACCAAGACGCAGACGATGG 60.080 57.895 0.00 0.76 43.93 3.51
2767 2922 1.092921 GTGAACCACACCAAGACGCA 61.093 55.000 0.00 0.00 43.05 5.24
2779 2934 1.890041 CAAAGACGCCGGTGAACCA 60.890 57.895 24.59 0.00 35.14 3.67
2809 2964 4.323104 GGAGAAGAGTACAAGGTGCTGATT 60.323 45.833 0.00 0.00 0.00 2.57
2812 2967 2.564947 AGGAGAAGAGTACAAGGTGCTG 59.435 50.000 0.00 0.00 0.00 4.41
2824 2979 2.553086 GCTGAGCATGAAGGAGAAGAG 58.447 52.381 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.