Multiple sequence alignment - TraesCS3B01G440800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G440800 | chr3B | 100.000 | 3690 | 0 | 0 | 2857 | 6546 | 680421977 | 680425666 | 0.000000e+00 | 6815.0 |
1 | TraesCS3B01G440800 | chr3B | 100.000 | 2551 | 0 | 0 | 1 | 2551 | 680419121 | 680421671 | 0.000000e+00 | 4711.0 |
2 | TraesCS3B01G440800 | chr3B | 96.691 | 544 | 16 | 1 | 1 | 544 | 823510405 | 823510946 | 0.000000e+00 | 904.0 |
3 | TraesCS3B01G440800 | chr3B | 94.624 | 93 | 4 | 1 | 4175 | 4266 | 126580153 | 126580061 | 6.840000e-30 | 143.0 |
4 | TraesCS3B01G440800 | chr3B | 85.393 | 89 | 3 | 3 | 2957 | 3035 | 187335767 | 187335679 | 4.210000e-12 | 84.2 |
5 | TraesCS3B01G440800 | chr3A | 94.753 | 1982 | 84 | 12 | 3031 | 4998 | 652028775 | 652026800 | 0.000000e+00 | 3066.0 |
6 | TraesCS3B01G440800 | chr3A | 94.828 | 1508 | 61 | 10 | 5044 | 6546 | 652026787 | 652025292 | 0.000000e+00 | 2337.0 |
7 | TraesCS3B01G440800 | chr3A | 92.884 | 1082 | 58 | 7 | 608 | 1687 | 652029893 | 652028829 | 0.000000e+00 | 1554.0 |
8 | TraesCS3B01G440800 | chr3A | 83.455 | 550 | 67 | 10 | 1904 | 2430 | 217840878 | 217840330 | 2.120000e-134 | 490.0 |
9 | TraesCS3B01G440800 | chr3A | 95.000 | 40 | 2 | 0 | 2857 | 2896 | 698273233 | 698273272 | 5.480000e-06 | 63.9 |
10 | TraesCS3B01G440800 | chr3D | 91.938 | 1873 | 97 | 20 | 4684 | 6546 | 516880102 | 516878274 | 0.000000e+00 | 2573.0 |
11 | TraesCS3B01G440800 | chr3D | 95.606 | 1593 | 63 | 7 | 3031 | 4622 | 516881694 | 516880108 | 0.000000e+00 | 2547.0 |
12 | TraesCS3B01G440800 | chr3D | 94.917 | 1082 | 52 | 3 | 608 | 1687 | 516882828 | 516881748 | 0.000000e+00 | 1690.0 |
13 | TraesCS3B01G440800 | chr1B | 96.875 | 544 | 14 | 3 | 1 | 544 | 28492052 | 28492592 | 0.000000e+00 | 907.0 |
14 | TraesCS3B01G440800 | chr1B | 94.803 | 558 | 28 | 1 | 1 | 557 | 656572951 | 656572394 | 0.000000e+00 | 869.0 |
15 | TraesCS3B01G440800 | chr1B | 87.692 | 65 | 7 | 1 | 2971 | 3035 | 198732979 | 198733042 | 2.530000e-09 | 75.0 |
16 | TraesCS3B01G440800 | chr2B | 96.514 | 545 | 18 | 1 | 1 | 544 | 799411192 | 799411736 | 0.000000e+00 | 900.0 |
17 | TraesCS3B01G440800 | chr2B | 93.680 | 538 | 26 | 4 | 8 | 545 | 379784449 | 379784978 | 0.000000e+00 | 798.0 |
18 | TraesCS3B01G440800 | chr2B | 84.786 | 677 | 72 | 20 | 1686 | 2345 | 761627972 | 761627310 | 0.000000e+00 | 651.0 |
19 | TraesCS3B01G440800 | chr2B | 84.786 | 677 | 72 | 20 | 1686 | 2345 | 761653973 | 761653311 | 0.000000e+00 | 651.0 |
20 | TraesCS3B01G440800 | chr2B | 84.786 | 677 | 72 | 19 | 1686 | 2345 | 761684081 | 761683419 | 0.000000e+00 | 651.0 |
21 | TraesCS3B01G440800 | chr2B | 84.211 | 95 | 4 | 4 | 2952 | 3035 | 782178848 | 782178754 | 1.510000e-11 | 82.4 |
22 | TraesCS3B01G440800 | chr2B | 94.872 | 39 | 2 | 0 | 2857 | 2895 | 761616499 | 761616461 | 1.970000e-05 | 62.1 |
23 | TraesCS3B01G440800 | chr2B | 94.872 | 39 | 2 | 0 | 2857 | 2895 | 761672535 | 761672497 | 1.970000e-05 | 62.1 |
24 | TraesCS3B01G440800 | chr6B | 95.430 | 547 | 21 | 2 | 1 | 544 | 654179704 | 654180249 | 0.000000e+00 | 869.0 |
25 | TraesCS3B01G440800 | chr6B | 86.420 | 81 | 3 | 3 | 2960 | 3035 | 657250024 | 657249947 | 1.510000e-11 | 82.4 |
26 | TraesCS3B01G440800 | chr4B | 95.264 | 549 | 23 | 3 | 1 | 548 | 166767946 | 166767400 | 0.000000e+00 | 867.0 |
27 | TraesCS3B01G440800 | chr4B | 96.078 | 51 | 2 | 0 | 2988 | 3038 | 399559017 | 399558967 | 4.210000e-12 | 84.2 |
28 | TraesCS3B01G440800 | chr7B | 94.600 | 537 | 26 | 3 | 1 | 536 | 105475454 | 105474920 | 0.000000e+00 | 828.0 |
29 | TraesCS3B01G440800 | chr7B | 91.525 | 59 | 4 | 1 | 2988 | 3045 | 119145275 | 119145333 | 5.440000e-11 | 80.5 |
30 | TraesCS3B01G440800 | chr5A | 92.791 | 541 | 38 | 1 | 8 | 547 | 672025302 | 672025842 | 0.000000e+00 | 782.0 |
31 | TraesCS3B01G440800 | chr5A | 85.564 | 762 | 80 | 19 | 1686 | 2429 | 487272619 | 487271870 | 0.000000e+00 | 771.0 |
32 | TraesCS3B01G440800 | chr5A | 95.000 | 40 | 2 | 0 | 2857 | 2896 | 487271735 | 487271696 | 5.480000e-06 | 63.9 |
33 | TraesCS3B01G440800 | chr7A | 85.621 | 765 | 81 | 18 | 1685 | 2432 | 724116157 | 724115405 | 0.000000e+00 | 776.0 |
34 | TraesCS3B01G440800 | chr7A | 86.116 | 569 | 46 | 17 | 1686 | 2234 | 689536646 | 689536091 | 3.400000e-162 | 582.0 |
35 | TraesCS3B01G440800 | chr7A | 96.591 | 88 | 3 | 0 | 4178 | 4265 | 398924432 | 398924519 | 5.290000e-31 | 147.0 |
36 | TraesCS3B01G440800 | chr7A | 95.000 | 40 | 2 | 0 | 2857 | 2896 | 724115273 | 724115234 | 5.480000e-06 | 63.9 |
37 | TraesCS3B01G440800 | chr2A | 82.908 | 901 | 109 | 29 | 1686 | 2551 | 277160829 | 277159939 | 0.000000e+00 | 769.0 |
38 | TraesCS3B01G440800 | chr2A | 82.336 | 702 | 82 | 23 | 1738 | 2432 | 667687769 | 667688435 | 7.360000e-159 | 571.0 |
39 | TraesCS3B01G440800 | chr2A | 96.703 | 91 | 2 | 1 | 4174 | 4263 | 593655998 | 593655908 | 4.090000e-32 | 150.0 |
40 | TraesCS3B01G440800 | chr2A | 91.346 | 104 | 8 | 1 | 4171 | 4274 | 4969446 | 4969548 | 2.460000e-29 | 141.0 |
41 | TraesCS3B01G440800 | chr4A | 83.558 | 742 | 74 | 18 | 1686 | 2411 | 621001822 | 621002531 | 0.000000e+00 | 651.0 |
42 | TraesCS3B01G440800 | chr4A | 97.674 | 86 | 2 | 0 | 4180 | 4265 | 590111549 | 590111634 | 1.470000e-31 | 148.0 |
43 | TraesCS3B01G440800 | chr4A | 94.340 | 53 | 1 | 1 | 2983 | 3035 | 734390848 | 734390798 | 5.440000e-11 | 80.5 |
44 | TraesCS3B01G440800 | chr4A | 93.023 | 43 | 3 | 0 | 2857 | 2899 | 681657990 | 681658032 | 5.480000e-06 | 63.9 |
45 | TraesCS3B01G440800 | chr1A | 73.672 | 866 | 163 | 49 | 3275 | 4093 | 460333229 | 460332382 | 6.470000e-70 | 276.0 |
46 | TraesCS3B01G440800 | chr1A | 83.333 | 84 | 6 | 5 | 2959 | 3040 | 33216304 | 33216227 | 3.270000e-08 | 71.3 |
47 | TraesCS3B01G440800 | chr1D | 87.162 | 148 | 19 | 0 | 3946 | 4093 | 360479489 | 360479342 | 1.130000e-37 | 169.0 |
48 | TraesCS3B01G440800 | chr2D | 94.565 | 92 | 5 | 0 | 4171 | 4262 | 299891012 | 299891103 | 6.840000e-30 | 143.0 |
49 | TraesCS3B01G440800 | chr2D | 94.565 | 92 | 5 | 0 | 4171 | 4262 | 557267175 | 557267266 | 6.840000e-30 | 143.0 |
50 | TraesCS3B01G440800 | chr2D | 92.857 | 42 | 3 | 0 | 2857 | 2898 | 645370871 | 645370830 | 1.970000e-05 | 62.1 |
51 | TraesCS3B01G440800 | chr6D | 91.935 | 62 | 3 | 2 | 2992 | 3051 | 284394966 | 284395027 | 1.170000e-12 | 86.1 |
52 | TraesCS3B01G440800 | chr6A | 95.000 | 40 | 2 | 0 | 2857 | 2896 | 49199883 | 49199922 | 5.480000e-06 | 63.9 |
53 | TraesCS3B01G440800 | chrUn | 94.872 | 39 | 2 | 0 | 2857 | 2895 | 11758850 | 11758888 | 1.970000e-05 | 62.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G440800 | chr3B | 680419121 | 680425666 | 6545 | False | 5763.00 | 6815 | 100.000000 | 1 | 6546 | 2 | chr3B.!!$F2 | 6545 |
1 | TraesCS3B01G440800 | chr3B | 823510405 | 823510946 | 541 | False | 904.00 | 904 | 96.691000 | 1 | 544 | 1 | chr3B.!!$F1 | 543 |
2 | TraesCS3B01G440800 | chr3A | 652025292 | 652029893 | 4601 | True | 2319.00 | 3066 | 94.155000 | 608 | 6546 | 3 | chr3A.!!$R2 | 5938 |
3 | TraesCS3B01G440800 | chr3A | 217840330 | 217840878 | 548 | True | 490.00 | 490 | 83.455000 | 1904 | 2430 | 1 | chr3A.!!$R1 | 526 |
4 | TraesCS3B01G440800 | chr3D | 516878274 | 516882828 | 4554 | True | 2270.00 | 2573 | 94.153667 | 608 | 6546 | 3 | chr3D.!!$R1 | 5938 |
5 | TraesCS3B01G440800 | chr1B | 28492052 | 28492592 | 540 | False | 907.00 | 907 | 96.875000 | 1 | 544 | 1 | chr1B.!!$F1 | 543 |
6 | TraesCS3B01G440800 | chr1B | 656572394 | 656572951 | 557 | True | 869.00 | 869 | 94.803000 | 1 | 557 | 1 | chr1B.!!$R1 | 556 |
7 | TraesCS3B01G440800 | chr2B | 799411192 | 799411736 | 544 | False | 900.00 | 900 | 96.514000 | 1 | 544 | 1 | chr2B.!!$F2 | 543 |
8 | TraesCS3B01G440800 | chr2B | 379784449 | 379784978 | 529 | False | 798.00 | 798 | 93.680000 | 8 | 545 | 1 | chr2B.!!$F1 | 537 |
9 | TraesCS3B01G440800 | chr2B | 761627310 | 761627972 | 662 | True | 651.00 | 651 | 84.786000 | 1686 | 2345 | 1 | chr2B.!!$R2 | 659 |
10 | TraesCS3B01G440800 | chr2B | 761653311 | 761653973 | 662 | True | 651.00 | 651 | 84.786000 | 1686 | 2345 | 1 | chr2B.!!$R3 | 659 |
11 | TraesCS3B01G440800 | chr2B | 761683419 | 761684081 | 662 | True | 651.00 | 651 | 84.786000 | 1686 | 2345 | 1 | chr2B.!!$R5 | 659 |
12 | TraesCS3B01G440800 | chr6B | 654179704 | 654180249 | 545 | False | 869.00 | 869 | 95.430000 | 1 | 544 | 1 | chr6B.!!$F1 | 543 |
13 | TraesCS3B01G440800 | chr4B | 166767400 | 166767946 | 546 | True | 867.00 | 867 | 95.264000 | 1 | 548 | 1 | chr4B.!!$R1 | 547 |
14 | TraesCS3B01G440800 | chr7B | 105474920 | 105475454 | 534 | True | 828.00 | 828 | 94.600000 | 1 | 536 | 1 | chr7B.!!$R1 | 535 |
15 | TraesCS3B01G440800 | chr5A | 672025302 | 672025842 | 540 | False | 782.00 | 782 | 92.791000 | 8 | 547 | 1 | chr5A.!!$F1 | 539 |
16 | TraesCS3B01G440800 | chr5A | 487271696 | 487272619 | 923 | True | 417.45 | 771 | 90.282000 | 1686 | 2896 | 2 | chr5A.!!$R1 | 1210 |
17 | TraesCS3B01G440800 | chr7A | 689536091 | 689536646 | 555 | True | 582.00 | 582 | 86.116000 | 1686 | 2234 | 1 | chr7A.!!$R1 | 548 |
18 | TraesCS3B01G440800 | chr7A | 724115234 | 724116157 | 923 | True | 419.95 | 776 | 90.310500 | 1685 | 2896 | 2 | chr7A.!!$R2 | 1211 |
19 | TraesCS3B01G440800 | chr2A | 277159939 | 277160829 | 890 | True | 769.00 | 769 | 82.908000 | 1686 | 2551 | 1 | chr2A.!!$R1 | 865 |
20 | TraesCS3B01G440800 | chr2A | 667687769 | 667688435 | 666 | False | 571.00 | 571 | 82.336000 | 1738 | 2432 | 1 | chr2A.!!$F2 | 694 |
21 | TraesCS3B01G440800 | chr4A | 621001822 | 621002531 | 709 | False | 651.00 | 651 | 83.558000 | 1686 | 2411 | 1 | chr4A.!!$F2 | 725 |
22 | TraesCS3B01G440800 | chr1A | 460332382 | 460333229 | 847 | True | 276.00 | 276 | 73.672000 | 3275 | 4093 | 1 | chr1A.!!$R2 | 818 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
606 | 618 | 0.038744 | CCCTGAAGCACCTCCATTGT | 59.961 | 55.000 | 0.00 | 0.00 | 0.0 | 2.71 | F |
2153 | 2205 | 1.063266 | AGGCCTTTGACCCAAGAAACA | 60.063 | 47.619 | 0.00 | 0.00 | 0.0 | 2.83 | F |
2974 | 3053 | 0.124522 | ATTTTACCCCCTCCCTCCCA | 59.875 | 55.000 | 0.00 | 0.00 | 0.0 | 4.37 | F |
2975 | 3054 | 0.124522 | TTTTACCCCCTCCCTCCCAT | 59.875 | 55.000 | 0.00 | 0.00 | 0.0 | 4.00 | F |
2979 | 3058 | 0.403453 | ACCCCCTCCCTCCCATAATG | 60.403 | 60.000 | 0.00 | 0.00 | 0.0 | 1.90 | F |
2981 | 3060 | 1.132201 | CCCCCTCCCTCCCATAATGTA | 60.132 | 57.143 | 0.00 | 0.00 | 0.0 | 2.29 | F |
3114 | 3193 | 1.213013 | CTCGCTGACTGGTTACGCT | 59.787 | 57.895 | 0.00 | 0.00 | 0.0 | 5.07 | F |
5006 | 5210 | 0.187117 | TGTTTCAAGCCCCATGGACA | 59.813 | 50.000 | 15.22 | 3.64 | 0.0 | 4.02 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2355 | 2417 | 0.827925 | TCCACTGTCTGCTCGTTCCT | 60.828 | 55.000 | 0.00 | 0.0 | 0.00 | 3.36 | R |
3017 | 3096 | 0.033306 | AGAACTACTCCCTCCGTCCC | 60.033 | 60.000 | 0.00 | 0.0 | 0.00 | 4.46 | R |
4622 | 4824 | 2.656947 | AAGGGCACTTCAGCAAGTAA | 57.343 | 45.000 | 0.00 | 0.0 | 41.24 | 2.24 | R |
4688 | 4890 | 2.715046 | TGCTGCCCTTTATTCAGACTG | 58.285 | 47.619 | 0.00 | 0.0 | 0.00 | 3.51 | R |
4696 | 4898 | 3.031013 | GGGTAACATTGCTGCCCTTTAT | 58.969 | 45.455 | 6.01 | 0.0 | 36.49 | 1.40 | R |
4731 | 4933 | 5.591099 | TCTCTCAAACAGAAAATTGGTTGC | 58.409 | 37.500 | 0.00 | 0.0 | 43.74 | 4.17 | R |
5013 | 5217 | 0.106918 | ACCGGGTGCTGAAACAAGAA | 60.107 | 50.000 | 6.32 | 0.0 | 0.00 | 2.52 | R |
5841 | 6052 | 0.040204 | AGGGGTGAAAGAGGCAATGG | 59.960 | 55.000 | 0.00 | 0.0 | 0.00 | 3.16 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
101 | 102 | 8.144478 | GGGATTGAAAGAGCTTACTTTTCTTTT | 58.856 | 33.333 | 2.25 | 0.00 | 40.27 | 2.27 |
489 | 499 | 8.267183 | GGGTCAAATCCCAAAATATTTTCAGAT | 58.733 | 33.333 | 10.53 | 12.08 | 46.30 | 2.90 |
514 | 526 | 8.792830 | TTAAGGTCAGATCTCGATTTGATTTT | 57.207 | 30.769 | 0.00 | 4.78 | 34.94 | 1.82 |
548 | 560 | 0.596341 | ACACGAAATTTTGCCGCACC | 60.596 | 50.000 | 5.27 | 0.00 | 0.00 | 5.01 |
562 | 574 | 2.662596 | CACCTGGTCAAGCGCCTA | 59.337 | 61.111 | 2.29 | 0.00 | 0.00 | 3.93 |
563 | 575 | 1.448540 | CACCTGGTCAAGCGCCTAG | 60.449 | 63.158 | 2.29 | 0.00 | 0.00 | 3.02 |
564 | 576 | 2.187946 | CCTGGTCAAGCGCCTAGG | 59.812 | 66.667 | 2.29 | 3.67 | 0.00 | 3.02 |
565 | 577 | 2.359169 | CCTGGTCAAGCGCCTAGGA | 61.359 | 63.158 | 14.75 | 0.00 | 30.79 | 2.94 |
566 | 578 | 1.142748 | CTGGTCAAGCGCCTAGGAG | 59.857 | 63.158 | 14.75 | 11.38 | 0.00 | 3.69 |
567 | 579 | 1.304962 | TGGTCAAGCGCCTAGGAGA | 60.305 | 57.895 | 17.75 | 0.49 | 0.00 | 3.71 |
568 | 580 | 0.902984 | TGGTCAAGCGCCTAGGAGAA | 60.903 | 55.000 | 17.75 | 0.00 | 0.00 | 2.87 |
569 | 581 | 0.249398 | GGTCAAGCGCCTAGGAGAAA | 59.751 | 55.000 | 17.75 | 0.00 | 0.00 | 2.52 |
570 | 582 | 1.338769 | GGTCAAGCGCCTAGGAGAAAA | 60.339 | 52.381 | 17.75 | 0.00 | 0.00 | 2.29 |
571 | 583 | 2.423577 | GTCAAGCGCCTAGGAGAAAAA | 58.576 | 47.619 | 17.75 | 0.00 | 0.00 | 1.94 |
601 | 613 | 1.995376 | TTTTTCCCTGAAGCACCTCC | 58.005 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
602 | 614 | 0.850100 | TTTTCCCTGAAGCACCTCCA | 59.150 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
603 | 615 | 1.075601 | TTTCCCTGAAGCACCTCCAT | 58.924 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
604 | 616 | 1.075601 | TTCCCTGAAGCACCTCCATT | 58.924 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
605 | 617 | 0.329261 | TCCCTGAAGCACCTCCATTG | 59.671 | 55.000 | 0.00 | 0.00 | 0.00 | 2.82 |
606 | 618 | 0.038744 | CCCTGAAGCACCTCCATTGT | 59.961 | 55.000 | 0.00 | 0.00 | 0.00 | 2.71 |
610 | 622 | 3.005554 | CTGAAGCACCTCCATTGTACAG | 58.994 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
801 | 814 | 2.673523 | CTCTCCCCCACAGCCAAG | 59.326 | 66.667 | 0.00 | 0.00 | 0.00 | 3.61 |
973 | 986 | 2.577593 | GACGGAGGGAGGGTTTCG | 59.422 | 66.667 | 0.00 | 0.00 | 0.00 | 3.46 |
984 | 997 | 1.676303 | GGGTTTCGCGGGAATTCCA | 60.676 | 57.895 | 25.67 | 2.18 | 37.91 | 3.53 |
1220 | 1233 | 1.439353 | ATTGCGCTGCTTACCATCGG | 61.439 | 55.000 | 9.73 | 0.00 | 33.89 | 4.18 |
1356 | 1369 | 7.543905 | ATTCCAGCTGAAATCCATGTTGGAAT | 61.544 | 38.462 | 17.39 | 14.19 | 41.77 | 3.01 |
1370 | 1383 | 6.095300 | CCATGTTGGAATAGCAGACATGTAAA | 59.905 | 38.462 | 0.00 | 0.00 | 43.61 | 2.01 |
1373 | 1386 | 5.692115 | TGGAATAGCAGACATGTAAAGGA | 57.308 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
1395 | 1408 | 4.971125 | GGGATAGGGTGAGCGCGC | 62.971 | 72.222 | 26.66 | 26.66 | 0.00 | 6.86 |
1407 | 1420 | 2.434359 | GCGCGCCAGAGTTTAGGT | 60.434 | 61.111 | 23.24 | 0.00 | 0.00 | 3.08 |
1415 | 1428 | 5.054477 | GCGCCAGAGTTTAGGTTGATAATA | 58.946 | 41.667 | 0.00 | 0.00 | 0.00 | 0.98 |
1421 | 1434 | 9.613428 | CCAGAGTTTAGGTTGATAATATTGACA | 57.387 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
1464 | 1477 | 5.675684 | TCACATATGCTGGAGTTTGTAGA | 57.324 | 39.130 | 1.58 | 0.00 | 0.00 | 2.59 |
1489 | 1502 | 2.066262 | GGTGCCGTAATGATATCGGTG | 58.934 | 52.381 | 9.27 | 0.00 | 45.11 | 4.94 |
1518 | 1531 | 7.273381 | GCTTTTATTCTGCATTGTTCGTTACAT | 59.727 | 33.333 | 0.00 | 0.00 | 36.44 | 2.29 |
1521 | 1534 | 2.161410 | TCTGCATTGTTCGTTACATGGC | 59.839 | 45.455 | 0.00 | 8.64 | 36.44 | 4.40 |
1531 | 1544 | 1.393539 | CGTTACATGGCTGCACTGTAC | 59.606 | 52.381 | 11.56 | 7.65 | 0.00 | 2.90 |
1561 | 1574 | 5.258841 | TCTCATCTCATTGTTCAGCCAATT | 58.741 | 37.500 | 0.00 | 0.00 | 32.81 | 2.32 |
1606 | 1620 | 9.049050 | TGTACTAGTTCAATTTAGTGGGGAATA | 57.951 | 33.333 | 0.00 | 0.00 | 32.64 | 1.75 |
1623 | 1637 | 8.626917 | TGGGGAATAACCTCACTAGTTAATTA | 57.373 | 34.615 | 0.00 | 0.00 | 45.39 | 1.40 |
1634 | 1648 | 9.226606 | CCTCACTAGTTAATTATTCCAAACACA | 57.773 | 33.333 | 0.00 | 0.00 | 0.00 | 3.72 |
1682 | 1696 | 4.889409 | TGATTTTTGAGAGCTGTTCTTGGT | 59.111 | 37.500 | 0.00 | 0.00 | 35.87 | 3.67 |
1737 | 1751 | 1.664874 | GCGAACTTAAAAAGTGGGCCG | 60.665 | 52.381 | 0.00 | 0.00 | 41.91 | 6.13 |
1746 | 1760 | 7.567458 | ACTTAAAAAGTGGGCCGAATATAGTA | 58.433 | 34.615 | 0.00 | 0.00 | 41.01 | 1.82 |
1809 | 1833 | 7.935338 | AAAGAAGATACAAAGCACAACATTG | 57.065 | 32.000 | 0.00 | 0.00 | 33.18 | 2.82 |
1813 | 1837 | 7.981225 | AGAAGATACAAAGCACAACATTGTTTT | 59.019 | 29.630 | 0.00 | 0.00 | 40.49 | 2.43 |
1827 | 1851 | 5.189180 | ACATTGTTTTTGCCCTAAAAAGCA | 58.811 | 33.333 | 0.00 | 0.00 | 45.95 | 3.91 |
1828 | 1852 | 5.827267 | ACATTGTTTTTGCCCTAAAAAGCAT | 59.173 | 32.000 | 0.00 | 0.00 | 45.95 | 3.79 |
1829 | 1853 | 6.017192 | ACATTGTTTTTGCCCTAAAAAGCATC | 60.017 | 34.615 | 0.00 | 0.00 | 45.95 | 3.91 |
1830 | 1854 | 5.289083 | TGTTTTTGCCCTAAAAAGCATCT | 57.711 | 34.783 | 0.00 | 0.00 | 45.95 | 2.90 |
1834 | 1860 | 6.859420 | TTTTGCCCTAAAAAGCATCTTTTC | 57.141 | 33.333 | 5.18 | 0.00 | 39.11 | 2.29 |
1877 | 1904 | 3.951775 | ATCGGATCTAACTCATCTGCC | 57.048 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
1894 | 1925 | 5.280654 | TCTGCCAGCATTTTCTTCTTTTT | 57.719 | 34.783 | 0.00 | 0.00 | 0.00 | 1.94 |
1895 | 1926 | 5.291971 | TCTGCCAGCATTTTCTTCTTTTTC | 58.708 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
1931 | 1963 | 9.697250 | GTTTTTAGGCAACATTTTACAAGAAAC | 57.303 | 29.630 | 0.00 | 0.00 | 41.41 | 2.78 |
1940 | 1972 | 6.725246 | ACATTTTACAAGAAACGAGTGGAAG | 58.275 | 36.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2034 | 2078 | 4.344390 | GGGTCCTCGTATCCTCAAATAAGT | 59.656 | 45.833 | 0.00 | 0.00 | 0.00 | 2.24 |
2043 | 2088 | 8.970020 | TCGTATCCTCAAATAAGTAACCTGTAA | 58.030 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
2102 | 2154 | 3.813529 | AACAGTACAAAGATCAAGCGC | 57.186 | 42.857 | 0.00 | 0.00 | 0.00 | 5.92 |
2110 | 2162 | 4.874970 | ACAAAGATCAAGCGCAAAAAGAT | 58.125 | 34.783 | 11.47 | 4.89 | 0.00 | 2.40 |
2153 | 2205 | 1.063266 | AGGCCTTTGACCCAAGAAACA | 60.063 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
2245 | 2301 | 8.037758 | AGATGAGAATACTTATAGGCAAATCCG | 58.962 | 37.037 | 0.00 | 0.00 | 40.77 | 4.18 |
2262 | 2318 | 3.669354 | CGTAAGGGAGTGAGATGGC | 57.331 | 57.895 | 0.00 | 0.00 | 0.00 | 4.40 |
2317 | 2379 | 4.925054 | CAGCGGCAATATCCATTAATTTGG | 59.075 | 41.667 | 1.45 | 0.00 | 38.18 | 3.28 |
2321 | 2383 | 6.072175 | GCGGCAATATCCATTAATTTGGTAGA | 60.072 | 38.462 | 0.00 | 0.00 | 38.01 | 2.59 |
2355 | 2417 | 1.063942 | TCGGGAGTAGGAGCAGAATGA | 60.064 | 52.381 | 0.00 | 0.00 | 39.69 | 2.57 |
2364 | 2428 | 1.285578 | GAGCAGAATGAGGAACGAGC | 58.714 | 55.000 | 0.00 | 0.00 | 39.69 | 5.03 |
2371 | 2435 | 1.261480 | ATGAGGAACGAGCAGACAGT | 58.739 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
2372 | 2436 | 0.315251 | TGAGGAACGAGCAGACAGTG | 59.685 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
2384 | 2448 | 3.118261 | AGCAGACAGTGGAAGAAGAAACA | 60.118 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
2390 | 2454 | 1.673920 | GTGGAAGAAGAAACAACGGCA | 59.326 | 47.619 | 0.00 | 0.00 | 0.00 | 5.69 |
2412 | 2476 | 2.159099 | GCTGGTGTTACGAGATGGATCA | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
2416 | 2480 | 6.228616 | TGGTGTTACGAGATGGATCAATTA | 57.771 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
2432 | 2496 | 8.359642 | TGGATCAATTAAATCGAAATTGGGATC | 58.640 | 33.333 | 16.93 | 13.69 | 42.17 | 3.36 |
2433 | 2497 | 8.579863 | GGATCAATTAAATCGAAATTGGGATCT | 58.420 | 33.333 | 16.93 | 2.76 | 42.17 | 2.75 |
2506 | 2584 | 2.477245 | TCCTAGCTGATTGGGCTACAA | 58.523 | 47.619 | 0.00 | 0.00 | 44.54 | 2.41 |
2518 | 2597 | 2.509166 | GGCTACAAGTTTAAGGCCCT | 57.491 | 50.000 | 0.00 | 0.00 | 34.19 | 5.19 |
2960 | 3039 | 5.007034 | TGAGCAATGGTTCCGAAGATTTTA | 58.993 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
2961 | 3040 | 5.106317 | TGAGCAATGGTTCCGAAGATTTTAC | 60.106 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
2962 | 3041 | 4.157840 | AGCAATGGTTCCGAAGATTTTACC | 59.842 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
2963 | 3042 | 4.676986 | GCAATGGTTCCGAAGATTTTACCC | 60.677 | 45.833 | 0.00 | 0.00 | 0.00 | 3.69 |
2964 | 3043 | 3.076079 | TGGTTCCGAAGATTTTACCCC | 57.924 | 47.619 | 0.00 | 0.00 | 0.00 | 4.95 |
2965 | 3044 | 2.291089 | TGGTTCCGAAGATTTTACCCCC | 60.291 | 50.000 | 0.00 | 0.00 | 0.00 | 5.40 |
2966 | 3045 | 2.025605 | GGTTCCGAAGATTTTACCCCCT | 60.026 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2967 | 3046 | 3.276857 | GTTCCGAAGATTTTACCCCCTC | 58.723 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2968 | 3047 | 1.841919 | TCCGAAGATTTTACCCCCTCC | 59.158 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
2969 | 3048 | 1.133884 | CCGAAGATTTTACCCCCTCCC | 60.134 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
2970 | 3049 | 1.844497 | CGAAGATTTTACCCCCTCCCT | 59.156 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
2971 | 3050 | 2.158798 | CGAAGATTTTACCCCCTCCCTC | 60.159 | 54.545 | 0.00 | 0.00 | 0.00 | 4.30 |
2972 | 3051 | 1.908643 | AGATTTTACCCCCTCCCTCC | 58.091 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2973 | 3052 | 0.851469 | GATTTTACCCCCTCCCTCCC | 59.149 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2974 | 3053 | 0.124522 | ATTTTACCCCCTCCCTCCCA | 59.875 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
2975 | 3054 | 0.124522 | TTTTACCCCCTCCCTCCCAT | 59.875 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2976 | 3055 | 1.036926 | TTTACCCCCTCCCTCCCATA | 58.963 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2977 | 3056 | 1.036926 | TTACCCCCTCCCTCCCATAA | 58.963 | 55.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2978 | 3057 | 1.270835 | TACCCCCTCCCTCCCATAAT | 58.729 | 55.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2979 | 3058 | 0.403453 | ACCCCCTCCCTCCCATAATG | 60.403 | 60.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2980 | 3059 | 0.403453 | CCCCCTCCCTCCCATAATGT | 60.403 | 60.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2981 | 3060 | 1.132201 | CCCCCTCCCTCCCATAATGTA | 60.132 | 57.143 | 0.00 | 0.00 | 0.00 | 2.29 |
2982 | 3061 | 2.499218 | CCCCCTCCCTCCCATAATGTAT | 60.499 | 54.545 | 0.00 | 0.00 | 0.00 | 2.29 |
2983 | 3062 | 3.269034 | CCCCTCCCTCCCATAATGTATT | 58.731 | 50.000 | 0.00 | 0.00 | 0.00 | 1.89 |
2984 | 3063 | 3.662642 | CCCCTCCCTCCCATAATGTATTT | 59.337 | 47.826 | 0.00 | 0.00 | 0.00 | 1.40 |
2985 | 3064 | 4.107961 | CCCCTCCCTCCCATAATGTATTTT | 59.892 | 45.833 | 0.00 | 0.00 | 0.00 | 1.82 |
2986 | 3065 | 5.079643 | CCCTCCCTCCCATAATGTATTTTG | 58.920 | 45.833 | 0.00 | 0.00 | 0.00 | 2.44 |
2987 | 3066 | 5.162991 | CCCTCCCTCCCATAATGTATTTTGA | 60.163 | 44.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2988 | 3067 | 5.770162 | CCTCCCTCCCATAATGTATTTTGAC | 59.230 | 44.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2989 | 3068 | 6.334378 | TCCCTCCCATAATGTATTTTGACA | 57.666 | 37.500 | 0.00 | 0.00 | 0.00 | 3.58 |
2990 | 3069 | 6.921412 | TCCCTCCCATAATGTATTTTGACAT | 58.079 | 36.000 | 0.00 | 0.00 | 41.92 | 3.06 |
3022 | 3101 | 5.789710 | AAAACGACTTACATTATGGGACG | 57.210 | 39.130 | 0.00 | 1.99 | 0.00 | 4.79 |
3023 | 3102 | 3.447918 | ACGACTTACATTATGGGACGG | 57.552 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
3024 | 3103 | 3.025978 | ACGACTTACATTATGGGACGGA | 58.974 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
3025 | 3104 | 3.067742 | ACGACTTACATTATGGGACGGAG | 59.932 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
3026 | 3105 | 3.552273 | CGACTTACATTATGGGACGGAGG | 60.552 | 52.174 | 0.00 | 0.00 | 0.00 | 4.30 |
3027 | 3106 | 2.704065 | ACTTACATTATGGGACGGAGGG | 59.296 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3028 | 3107 | 2.779429 | TACATTATGGGACGGAGGGA | 57.221 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
3029 | 3108 | 1.424638 | ACATTATGGGACGGAGGGAG | 58.575 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3030 | 3109 | 1.344087 | ACATTATGGGACGGAGGGAGT | 60.344 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
3038 | 3117 | 1.750206 | GGACGGAGGGAGTAGTTCTTC | 59.250 | 57.143 | 0.00 | 0.00 | 0.00 | 2.87 |
3061 | 3140 | 8.677148 | TTCAGCTATTTAGTTCTGTTCAACTT | 57.323 | 30.769 | 0.00 | 0.00 | 37.75 | 2.66 |
3062 | 3141 | 8.677148 | TCAGCTATTTAGTTCTGTTCAACTTT | 57.323 | 30.769 | 0.00 | 0.00 | 37.75 | 2.66 |
3114 | 3193 | 1.213013 | CTCGCTGACTGGTTACGCT | 59.787 | 57.895 | 0.00 | 0.00 | 0.00 | 5.07 |
3123 | 3202 | 3.880490 | TGACTGGTTACGCTCAAATTTGT | 59.120 | 39.130 | 17.47 | 1.31 | 0.00 | 2.83 |
3443 | 3532 | 3.668447 | TGCTGACAATTCTGGAAGTCTC | 58.332 | 45.455 | 0.00 | 0.00 | 33.76 | 3.36 |
3472 | 3561 | 3.093574 | TCGAACTAACGTATTTCTCGCG | 58.906 | 45.455 | 0.00 | 0.00 | 34.70 | 5.87 |
3527 | 3616 | 7.675062 | AGGAGAAGCTACATATCTTTGGTATG | 58.325 | 38.462 | 0.00 | 0.00 | 36.01 | 2.39 |
3993 | 4193 | 5.248477 | TCTTGGTATAGCCTTGAAACTGACT | 59.752 | 40.000 | 0.00 | 0.00 | 38.35 | 3.41 |
4151 | 4352 | 5.533482 | AGTGATCGTACTTCAATATCTGCC | 58.467 | 41.667 | 0.00 | 0.00 | 0.00 | 4.85 |
4285 | 4487 | 6.376248 | ACATCTTTAATCTGCCATAATGGGT | 58.624 | 36.000 | 0.00 | 0.00 | 38.19 | 4.51 |
4315 | 4517 | 9.039870 | GGCATGCTATTGATATTAGTATCTGAC | 57.960 | 37.037 | 18.92 | 0.00 | 38.03 | 3.51 |
4355 | 4557 | 6.975772 | TGTTACAAACTTATGCTTGGTGTTTC | 59.024 | 34.615 | 0.00 | 0.00 | 0.00 | 2.78 |
4362 | 4564 | 5.121768 | ACTTATGCTTGGTGTTTCGTACATC | 59.878 | 40.000 | 0.00 | 0.00 | 39.39 | 3.06 |
4465 | 4667 | 6.373216 | TGTTTACATCACTAACAATACTGGCC | 59.627 | 38.462 | 0.00 | 0.00 | 0.00 | 5.36 |
4468 | 4670 | 4.019321 | ACATCACTAACAATACTGGCCAGT | 60.019 | 41.667 | 38.92 | 38.92 | 45.02 | 4.00 |
4502 | 4704 | 4.709397 | TCAAGGTAACATATTTGGGCTTGG | 59.291 | 41.667 | 0.00 | 0.00 | 41.41 | 3.61 |
4596 | 4798 | 6.938542 | CAAGTAGTGCTTGCTTATACTAAGC | 58.061 | 40.000 | 8.09 | 11.10 | 46.68 | 3.09 |
4622 | 4824 | 5.048782 | TGCAGTGAATTGCTTTTAGAATCGT | 60.049 | 36.000 | 0.00 | 0.00 | 44.38 | 3.73 |
4637 | 4839 | 3.433615 | AGAATCGTTACTTGCTGAAGTGC | 59.566 | 43.478 | 0.00 | 0.00 | 42.66 | 4.40 |
4644 | 4846 | 1.410153 | ACTTGCTGAAGTGCCCTTTTG | 59.590 | 47.619 | 0.00 | 0.00 | 41.12 | 2.44 |
4662 | 4864 | 6.038714 | CCCTTTTGGCAGTTATCTTATCTCAC | 59.961 | 42.308 | 0.00 | 0.00 | 38.58 | 3.51 |
4688 | 4890 | 3.254166 | AGTTGGACACAGTGATTGAATGC | 59.746 | 43.478 | 7.81 | 0.00 | 0.00 | 3.56 |
4689 | 4891 | 2.861274 | TGGACACAGTGATTGAATGCA | 58.139 | 42.857 | 7.81 | 0.00 | 0.00 | 3.96 |
4696 | 4898 | 4.214758 | CACAGTGATTGAATGCAGTCTGAA | 59.785 | 41.667 | 16.05 | 2.36 | 32.48 | 3.02 |
4724 | 4926 | 4.141733 | GGGCAGCAATGTTACCCAAATATT | 60.142 | 41.667 | 0.01 | 0.00 | 40.52 | 1.28 |
4731 | 4933 | 9.612066 | AGCAATGTTACCCAAATATTTAATTGG | 57.388 | 29.630 | 0.00 | 0.00 | 44.61 | 3.16 |
4835 | 5037 | 8.775151 | TCACCTATCATGATCTATGCCATATTT | 58.225 | 33.333 | 12.53 | 0.00 | 36.70 | 1.40 |
4836 | 5038 | 9.404848 | CACCTATCATGATCTATGCCATATTTT | 57.595 | 33.333 | 12.53 | 0.00 | 36.70 | 1.82 |
4954 | 5158 | 1.750778 | CCATGGGGCTACACAACATTC | 59.249 | 52.381 | 2.85 | 0.00 | 0.00 | 2.67 |
4998 | 5202 | 4.853924 | TTCATCTTCTTGTTTCAAGCCC | 57.146 | 40.909 | 4.82 | 0.00 | 0.00 | 5.19 |
4999 | 5203 | 3.157087 | TCATCTTCTTGTTTCAAGCCCC | 58.843 | 45.455 | 4.82 | 0.00 | 0.00 | 5.80 |
5000 | 5204 | 2.746279 | TCTTCTTGTTTCAAGCCCCA | 57.254 | 45.000 | 4.82 | 0.00 | 0.00 | 4.96 |
5002 | 5206 | 2.892852 | TCTTCTTGTTTCAAGCCCCATG | 59.107 | 45.455 | 4.82 | 0.00 | 0.00 | 3.66 |
5004 | 5208 | 1.146774 | TCTTGTTTCAAGCCCCATGGA | 59.853 | 47.619 | 15.22 | 0.00 | 0.00 | 3.41 |
5005 | 5209 | 1.273327 | CTTGTTTCAAGCCCCATGGAC | 59.727 | 52.381 | 15.22 | 4.77 | 0.00 | 4.02 |
5006 | 5210 | 0.187117 | TGTTTCAAGCCCCATGGACA | 59.813 | 50.000 | 15.22 | 3.64 | 0.00 | 4.02 |
5007 | 5211 | 1.337118 | GTTTCAAGCCCCATGGACAA | 58.663 | 50.000 | 15.22 | 0.00 | 0.00 | 3.18 |
5008 | 5212 | 1.000843 | GTTTCAAGCCCCATGGACAAC | 59.999 | 52.381 | 15.22 | 1.90 | 0.00 | 3.32 |
5009 | 5213 | 0.187117 | TTCAAGCCCCATGGACAACA | 59.813 | 50.000 | 15.22 | 0.00 | 0.00 | 3.33 |
5010 | 5214 | 0.251297 | TCAAGCCCCATGGACAACAG | 60.251 | 55.000 | 15.22 | 0.00 | 0.00 | 3.16 |
5011 | 5215 | 0.540365 | CAAGCCCCATGGACAACAGT | 60.540 | 55.000 | 15.22 | 0.00 | 0.00 | 3.55 |
5012 | 5216 | 0.251341 | AAGCCCCATGGACAACAGTC | 60.251 | 55.000 | 15.22 | 0.00 | 0.00 | 3.51 |
5013 | 5217 | 1.136329 | AGCCCCATGGACAACAGTCT | 61.136 | 55.000 | 15.22 | 0.00 | 32.81 | 3.24 |
5014 | 5218 | 0.251341 | GCCCCATGGACAACAGTCTT | 60.251 | 55.000 | 15.22 | 0.00 | 32.81 | 3.01 |
5015 | 5219 | 1.826385 | CCCCATGGACAACAGTCTTC | 58.174 | 55.000 | 15.22 | 0.00 | 32.81 | 2.87 |
5016 | 5220 | 1.352352 | CCCCATGGACAACAGTCTTCT | 59.648 | 52.381 | 15.22 | 0.00 | 32.81 | 2.85 |
5017 | 5221 | 2.224867 | CCCCATGGACAACAGTCTTCTT | 60.225 | 50.000 | 15.22 | 0.00 | 32.81 | 2.52 |
5018 | 5222 | 2.816087 | CCCATGGACAACAGTCTTCTTG | 59.184 | 50.000 | 15.22 | 0.00 | 32.81 | 3.02 |
5019 | 5223 | 3.480470 | CCATGGACAACAGTCTTCTTGT | 58.520 | 45.455 | 5.56 | 0.00 | 32.81 | 3.16 |
5020 | 5224 | 3.885297 | CCATGGACAACAGTCTTCTTGTT | 59.115 | 43.478 | 5.56 | 0.00 | 32.81 | 2.83 |
5028 | 5232 | 2.945668 | ACAGTCTTCTTGTTTCAGCACC | 59.054 | 45.455 | 0.00 | 0.00 | 0.00 | 5.01 |
5031 | 5235 | 0.593128 | CTTCTTGTTTCAGCACCCGG | 59.407 | 55.000 | 0.00 | 0.00 | 0.00 | 5.73 |
5045 | 5249 | 4.511826 | CAGCACCCGGTAATCTAATTTCTC | 59.488 | 45.833 | 0.00 | 0.00 | 0.00 | 2.87 |
5052 | 5256 | 4.025979 | CGGTAATCTAATTTCTCGTGCCAC | 60.026 | 45.833 | 0.00 | 0.00 | 0.00 | 5.01 |
5081 | 5285 | 5.762218 | ACTATTATGCCATCTTGAGTTCAGC | 59.238 | 40.000 | 0.00 | 0.00 | 0.00 | 4.26 |
5147 | 5351 | 9.683069 | ACAAATGTTTCTGCTAAACTTGATAAG | 57.317 | 29.630 | 16.62 | 0.00 | 0.00 | 1.73 |
5156 | 5361 | 1.739067 | AACTTGATAAGCTGCCGGTC | 58.261 | 50.000 | 1.90 | 0.00 | 0.00 | 4.79 |
5167 | 5372 | 1.836383 | CTGCCGGTCTTGTCGTATAC | 58.164 | 55.000 | 1.90 | 0.00 | 0.00 | 1.47 |
5174 | 5379 | 4.033684 | CGGTCTTGTCGTATACAGTTAGC | 58.966 | 47.826 | 3.32 | 0.00 | 39.87 | 3.09 |
5177 | 5382 | 5.505324 | GGTCTTGTCGTATACAGTTAGCGAT | 60.505 | 44.000 | 3.32 | 0.00 | 39.87 | 4.58 |
5186 | 5391 | 6.747739 | CGTATACAGTTAGCGATAATGCTCAT | 59.252 | 38.462 | 3.32 | 0.00 | 45.87 | 2.90 |
5197 | 5403 | 8.531622 | AGCGATAATGCTCATGATATTATAGC | 57.468 | 34.615 | 27.72 | 27.72 | 42.95 | 2.97 |
5274 | 5480 | 3.876914 | TGACAGAGATGTGTGGTTTTGTC | 59.123 | 43.478 | 0.00 | 0.00 | 35.48 | 3.18 |
5289 | 5495 | 8.076351 | GTGGTTTTGTCACAATCCTTTCTGGA | 62.076 | 42.308 | 11.83 | 0.00 | 40.79 | 3.86 |
5375 | 5581 | 7.544622 | TCTGGTTTGCACATAGTAACTAGTAG | 58.455 | 38.462 | 9.13 | 0.00 | 32.81 | 2.57 |
5377 | 5583 | 7.544622 | TGGTTTGCACATAGTAACTAGTAGAG | 58.455 | 38.462 | 3.59 | 0.00 | 0.00 | 2.43 |
5378 | 5584 | 7.177921 | TGGTTTGCACATAGTAACTAGTAGAGT | 59.822 | 37.037 | 3.59 | 0.00 | 41.56 | 3.24 |
5379 | 5585 | 8.680903 | GGTTTGCACATAGTAACTAGTAGAGTA | 58.319 | 37.037 | 3.59 | 0.00 | 37.44 | 2.59 |
5506 | 5712 | 0.465705 | TTAGATCCGCTGCTGAAGGG | 59.534 | 55.000 | 0.00 | 0.00 | 38.56 | 3.95 |
5643 | 5849 | 7.339482 | ACTTTAGGGCTCTATAAACAGGAAAG | 58.661 | 38.462 | 0.00 | 0.00 | 0.00 | 2.62 |
5804 | 6015 | 7.224753 | CGGCTATCATCTGTAACTGTTGTATTT | 59.775 | 37.037 | 2.69 | 0.00 | 0.00 | 1.40 |
5841 | 6052 | 7.649705 | GGGAAAGAATCTGAAGAACTCAAAAAC | 59.350 | 37.037 | 0.00 | 0.00 | 32.17 | 2.43 |
5846 | 6058 | 8.139989 | AGAATCTGAAGAACTCAAAAACCATTG | 58.860 | 33.333 | 0.00 | 0.00 | 32.17 | 2.82 |
5857 | 6069 | 3.751479 | AAAACCATTGCCTCTTTCACC | 57.249 | 42.857 | 0.00 | 0.00 | 0.00 | 4.02 |
5858 | 6070 | 1.632589 | AACCATTGCCTCTTTCACCC | 58.367 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
5872 | 6084 | 0.770499 | TCACCCCTGTTGAATCTGCA | 59.230 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
5875 | 6087 | 1.076024 | ACCCCTGTTGAATCTGCACAT | 59.924 | 47.619 | 0.00 | 0.00 | 0.00 | 3.21 |
5911 | 6123 | 2.223782 | TGGTGATGTTCTTTGCTTGTGC | 60.224 | 45.455 | 0.00 | 0.00 | 40.20 | 4.57 |
6016 | 6229 | 1.401199 | GCTTGCTCATTTCAGCTCTCC | 59.599 | 52.381 | 0.00 | 0.00 | 40.39 | 3.71 |
6031 | 6244 | 2.844966 | GCTCTCCCCTTTAACTAACCCT | 59.155 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
6040 | 6253 | 5.708697 | CCCTTTAACTAACCCTGTAACCTTG | 59.291 | 44.000 | 0.00 | 0.00 | 0.00 | 3.61 |
6114 | 6329 | 2.553086 | GCTGAGCATGAAGGAGAAGAG | 58.447 | 52.381 | 0.00 | 0.00 | 0.00 | 2.85 |
6126 | 6341 | 2.564947 | AGGAGAAGAGTACAAGGTGCTG | 59.435 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
6129 | 6344 | 4.323104 | GGAGAAGAGTACAAGGTGCTGATT | 60.323 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
6159 | 6374 | 1.890041 | CAAAGACGCCGGTGAACCA | 60.890 | 57.895 | 24.59 | 0.00 | 35.14 | 3.67 |
6171 | 6386 | 1.092921 | GTGAACCACACCAAGACGCA | 61.093 | 55.000 | 0.00 | 0.00 | 43.05 | 5.24 |
6179 | 6394 | 1.079819 | ACCAAGACGCAGACGATGG | 60.080 | 57.895 | 0.00 | 0.76 | 43.93 | 3.51 |
6180 | 6395 | 1.079819 | CCAAGACGCAGACGATGGT | 60.080 | 57.895 | 0.00 | 0.00 | 43.93 | 3.55 |
6228 | 6443 | 3.742983 | GGTCATGAACCTCGTCCTC | 57.257 | 57.895 | 0.00 | 0.00 | 45.45 | 3.71 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
101 | 102 | 1.445942 | GATCGAGATGGCCCCGAAA | 59.554 | 57.895 | 0.00 | 0.00 | 35.87 | 3.46 |
258 | 267 | 4.504340 | GGGTGTGGACATATATAAACCGCT | 60.504 | 45.833 | 13.74 | 0.00 | 33.09 | 5.52 |
444 | 454 | 1.243902 | CTTTTGCCTACCGCCAAGAA | 58.756 | 50.000 | 0.00 | 0.00 | 36.24 | 2.52 |
489 | 499 | 8.792830 | AAAATCAAATCGAGATCTGACCTTAA | 57.207 | 30.769 | 0.00 | 0.00 | 0.00 | 1.85 |
492 | 504 | 5.819901 | GGAAAATCAAATCGAGATCTGACCT | 59.180 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
514 | 526 | 2.724454 | TCGTGTTTTGACCCTTTTGGA | 58.276 | 42.857 | 0.00 | 0.00 | 44.07 | 3.53 |
548 | 560 | 1.142748 | CTCCTAGGCGCTTGACCAG | 59.857 | 63.158 | 7.64 | 0.00 | 0.00 | 4.00 |
582 | 594 | 1.216678 | TGGAGGTGCTTCAGGGAAAAA | 59.783 | 47.619 | 0.00 | 0.00 | 0.00 | 1.94 |
583 | 595 | 0.850100 | TGGAGGTGCTTCAGGGAAAA | 59.150 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
584 | 596 | 1.075601 | ATGGAGGTGCTTCAGGGAAA | 58.924 | 50.000 | 0.00 | 0.00 | 0.00 | 3.13 |
585 | 597 | 1.075601 | AATGGAGGTGCTTCAGGGAA | 58.924 | 50.000 | 0.00 | 0.00 | 0.00 | 3.97 |
586 | 598 | 0.329261 | CAATGGAGGTGCTTCAGGGA | 59.671 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
587 | 599 | 0.038744 | ACAATGGAGGTGCTTCAGGG | 59.961 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
588 | 600 | 2.290260 | TGTACAATGGAGGTGCTTCAGG | 60.290 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
589 | 601 | 3.005554 | CTGTACAATGGAGGTGCTTCAG | 58.994 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
590 | 602 | 2.290260 | CCTGTACAATGGAGGTGCTTCA | 60.290 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
591 | 603 | 2.359900 | CCTGTACAATGGAGGTGCTTC | 58.640 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
592 | 604 | 1.614317 | GCCTGTACAATGGAGGTGCTT | 60.614 | 52.381 | 5.35 | 0.00 | 0.00 | 3.91 |
593 | 605 | 0.035056 | GCCTGTACAATGGAGGTGCT | 60.035 | 55.000 | 5.35 | 0.00 | 0.00 | 4.40 |
594 | 606 | 1.032114 | GGCCTGTACAATGGAGGTGC | 61.032 | 60.000 | 5.35 | 0.00 | 0.00 | 5.01 |
595 | 607 | 0.744414 | CGGCCTGTACAATGGAGGTG | 60.744 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
596 | 608 | 0.907704 | TCGGCCTGTACAATGGAGGT | 60.908 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
597 | 609 | 0.469917 | ATCGGCCTGTACAATGGAGG | 59.530 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
598 | 610 | 1.586422 | CATCGGCCTGTACAATGGAG | 58.414 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
599 | 611 | 0.463654 | GCATCGGCCTGTACAATGGA | 60.464 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
600 | 612 | 2.024918 | GCATCGGCCTGTACAATGG | 58.975 | 57.895 | 0.00 | 0.00 | 0.00 | 3.16 |
1107 | 1120 | 0.967887 | TGAAGACGCTGGAGGAGAGG | 60.968 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
1298 | 1311 | 3.490933 | GCATAATCAGACACCAGCGTCTA | 60.491 | 47.826 | 0.00 | 0.00 | 44.49 | 2.59 |
1356 | 1369 | 5.128827 | CCCTAACTCCTTTACATGTCTGCTA | 59.871 | 44.000 | 0.00 | 0.00 | 0.00 | 3.49 |
1359 | 1372 | 5.677319 | TCCCTAACTCCTTTACATGTCTG | 57.323 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
1360 | 1373 | 6.555360 | CCTATCCCTAACTCCTTTACATGTCT | 59.445 | 42.308 | 0.00 | 0.00 | 0.00 | 3.41 |
1370 | 1383 | 2.426561 | GCTCACCCTATCCCTAACTCCT | 60.427 | 54.545 | 0.00 | 0.00 | 0.00 | 3.69 |
1373 | 1386 | 1.705873 | CGCTCACCCTATCCCTAACT | 58.294 | 55.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1395 | 1408 | 9.613428 | TGTCAATATTATCAACCTAAACTCTGG | 57.387 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
1415 | 1428 | 5.365605 | TCCCTACATCTAAATCGGTGTCAAT | 59.634 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1421 | 1434 | 4.960469 | TGAACTCCCTACATCTAAATCGGT | 59.040 | 41.667 | 0.00 | 0.00 | 0.00 | 4.69 |
1435 | 1448 | 2.437281 | CTCCAGCATATGTGAACTCCCT | 59.563 | 50.000 | 4.29 | 0.00 | 0.00 | 4.20 |
1479 | 1492 | 6.458206 | GCAGAATAAAAGCAACACCGATATCA | 60.458 | 38.462 | 3.12 | 0.00 | 0.00 | 2.15 |
1483 | 1496 | 3.505680 | TGCAGAATAAAAGCAACACCGAT | 59.494 | 39.130 | 0.00 | 0.00 | 34.97 | 4.18 |
1489 | 1502 | 5.402270 | ACGAACAATGCAGAATAAAAGCAAC | 59.598 | 36.000 | 0.00 | 0.00 | 42.15 | 4.17 |
1518 | 1531 | 1.121407 | ACCAGAGTACAGTGCAGCCA | 61.121 | 55.000 | 0.00 | 0.00 | 0.00 | 4.75 |
1521 | 1534 | 2.297315 | TGAGAACCAGAGTACAGTGCAG | 59.703 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
1531 | 1544 | 5.485620 | TGAACAATGAGATGAGAACCAGAG | 58.514 | 41.667 | 0.00 | 0.00 | 0.00 | 3.35 |
1577 | 1590 | 7.402071 | TCCCCACTAAATTGAACTAGTACATCT | 59.598 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
1606 | 1620 | 9.802039 | TGTTTGGAATAATTAACTAGTGAGGTT | 57.198 | 29.630 | 0.00 | 0.00 | 0.00 | 3.50 |
1634 | 1648 | 9.878599 | CAAAACGACAGAATGATAACTTTTACT | 57.121 | 29.630 | 0.00 | 0.00 | 39.69 | 2.24 |
1785 | 1809 | 7.491682 | ACAATGTTGTGCTTTGTATCTTCTTT | 58.508 | 30.769 | 0.00 | 0.00 | 41.69 | 2.52 |
1786 | 1810 | 7.042797 | ACAATGTTGTGCTTTGTATCTTCTT | 57.957 | 32.000 | 0.00 | 0.00 | 41.69 | 2.52 |
1787 | 1811 | 6.639632 | ACAATGTTGTGCTTTGTATCTTCT | 57.360 | 33.333 | 0.00 | 0.00 | 41.69 | 2.85 |
1809 | 1833 | 6.618287 | AAAGATGCTTTTTAGGGCAAAAAC | 57.382 | 33.333 | 0.00 | 0.00 | 40.39 | 2.43 |
1813 | 1837 | 5.806654 | AGAAAAGATGCTTTTTAGGGCAA | 57.193 | 34.783 | 6.60 | 0.00 | 41.90 | 4.52 |
1870 | 1897 | 4.451629 | AAGAAGAAAATGCTGGCAGATG | 57.548 | 40.909 | 20.86 | 0.00 | 0.00 | 2.90 |
1877 | 1904 | 8.614346 | TGATTTTGGAAAAAGAAGAAAATGCTG | 58.386 | 29.630 | 0.00 | 0.00 | 0.00 | 4.41 |
1894 | 1925 | 6.586344 | TGTTGCCTAAAAACATGATTTTGGA | 58.414 | 32.000 | 21.08 | 7.21 | 33.94 | 3.53 |
1895 | 1926 | 6.857777 | TGTTGCCTAAAAACATGATTTTGG | 57.142 | 33.333 | 20.35 | 17.59 | 34.51 | 3.28 |
1931 | 1963 | 4.315803 | ACAAATTCAGGTACTTCCACTCG | 58.684 | 43.478 | 0.00 | 0.00 | 34.60 | 4.18 |
2110 | 2162 | 8.349983 | GCCTACAAAGTTCTTGTAATTTCAGAA | 58.650 | 33.333 | 0.00 | 0.00 | 34.84 | 3.02 |
2153 | 2205 | 2.435372 | TTGCAAGTTCCAACAGGACT | 57.565 | 45.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2163 | 2215 | 2.615912 | AGCTCAGTCACTTTGCAAGTTC | 59.384 | 45.455 | 0.00 | 0.00 | 40.46 | 3.01 |
2245 | 2301 | 1.112113 | TCGCCATCTCACTCCCTTAC | 58.888 | 55.000 | 0.00 | 0.00 | 0.00 | 2.34 |
2262 | 2318 | 3.625764 | TCTTTGGTCCACTTTCAGTTTCG | 59.374 | 43.478 | 0.00 | 0.00 | 0.00 | 3.46 |
2278 | 2334 | 2.096496 | CCGCTGTAGCTGATTTCTTTGG | 59.904 | 50.000 | 0.00 | 0.00 | 39.32 | 3.28 |
2355 | 2417 | 0.827925 | TCCACTGTCTGCTCGTTCCT | 60.828 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2364 | 2428 | 4.260375 | CGTTGTTTCTTCTTCCACTGTCTG | 60.260 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
2371 | 2435 | 1.946768 | CTGCCGTTGTTTCTTCTTCCA | 59.053 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
2372 | 2436 | 1.335051 | GCTGCCGTTGTTTCTTCTTCC | 60.335 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
2384 | 2448 | 1.959226 | CGTAACACCAGCTGCCGTT | 60.959 | 57.895 | 19.11 | 19.11 | 0.00 | 4.44 |
2390 | 2454 | 1.557099 | TCCATCTCGTAACACCAGCT | 58.443 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
2478 | 2556 | 3.334691 | CCAATCAGCTAGGAAACGTTCA | 58.665 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
2485 | 2563 | 2.477245 | TGTAGCCCAATCAGCTAGGAA | 58.523 | 47.619 | 0.00 | 0.00 | 43.26 | 3.36 |
2486 | 2564 | 2.174685 | TGTAGCCCAATCAGCTAGGA | 57.825 | 50.000 | 0.00 | 0.00 | 43.26 | 2.94 |
2506 | 2584 | 3.069016 | CCGAACAAAAAGGGCCTTAAACT | 59.931 | 43.478 | 21.25 | 0.00 | 0.00 | 2.66 |
2518 | 2597 | 2.766970 | GCTACACAGCCGAACAAAAA | 57.233 | 45.000 | 0.00 | 0.00 | 42.37 | 1.94 |
2859 | 2938 | 2.430367 | GGGCAAGAAGGGTGACGT | 59.570 | 61.111 | 0.00 | 0.00 | 0.00 | 4.34 |
2864 | 2943 | 1.929088 | GGGTAGGGGCAAGAAGGGT | 60.929 | 63.158 | 0.00 | 0.00 | 0.00 | 4.34 |
2901 | 2980 | 6.072893 | GGTAGTTTCTCCGCAAATACTTGAAA | 60.073 | 38.462 | 0.00 | 0.00 | 34.14 | 2.69 |
2911 | 2990 | 2.137523 | GTTTCGGTAGTTTCTCCGCAA | 58.862 | 47.619 | 0.00 | 0.00 | 45.44 | 4.85 |
2927 | 3006 | 0.529378 | CCATTGCTCAGGCCAGTTTC | 59.471 | 55.000 | 5.01 | 0.00 | 37.74 | 2.78 |
2931 | 3010 | 1.318158 | GGAACCATTGCTCAGGCCAG | 61.318 | 60.000 | 5.01 | 0.00 | 37.74 | 4.85 |
2960 | 3039 | 0.403453 | CATTATGGGAGGGAGGGGGT | 60.403 | 60.000 | 0.00 | 0.00 | 0.00 | 4.95 |
2961 | 3040 | 0.403453 | ACATTATGGGAGGGAGGGGG | 60.403 | 60.000 | 0.00 | 0.00 | 0.00 | 5.40 |
2962 | 3041 | 2.433444 | TACATTATGGGAGGGAGGGG | 57.567 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2963 | 3042 | 5.079643 | CAAAATACATTATGGGAGGGAGGG | 58.920 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2964 | 3043 | 5.770162 | GTCAAAATACATTATGGGAGGGAGG | 59.230 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2965 | 3044 | 6.364701 | TGTCAAAATACATTATGGGAGGGAG | 58.635 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2966 | 3045 | 6.334378 | TGTCAAAATACATTATGGGAGGGA | 57.666 | 37.500 | 0.00 | 0.00 | 0.00 | 4.20 |
2967 | 3046 | 7.601705 | AATGTCAAAATACATTATGGGAGGG | 57.398 | 36.000 | 0.55 | 0.00 | 45.84 | 4.30 |
2968 | 3047 | 9.354673 | ACTAATGTCAAAATACATTATGGGAGG | 57.645 | 33.333 | 9.23 | 1.61 | 46.13 | 4.30 |
2970 | 3049 | 9.693739 | ACACTAATGTCAAAATACATTATGGGA | 57.306 | 29.630 | 9.23 | 0.00 | 46.13 | 4.37 |
2999 | 3078 | 5.122711 | CCGTCCCATAATGTAAGTCGTTTTT | 59.877 | 40.000 | 0.00 | 0.00 | 0.00 | 1.94 |
3000 | 3079 | 4.632688 | CCGTCCCATAATGTAAGTCGTTTT | 59.367 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
3001 | 3080 | 4.081531 | TCCGTCCCATAATGTAAGTCGTTT | 60.082 | 41.667 | 0.00 | 0.00 | 0.00 | 3.60 |
3002 | 3081 | 3.448301 | TCCGTCCCATAATGTAAGTCGTT | 59.552 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
3003 | 3082 | 3.025978 | TCCGTCCCATAATGTAAGTCGT | 58.974 | 45.455 | 0.00 | 0.00 | 0.00 | 4.34 |
3004 | 3083 | 3.552273 | CCTCCGTCCCATAATGTAAGTCG | 60.552 | 52.174 | 0.00 | 0.00 | 0.00 | 4.18 |
3005 | 3084 | 3.244112 | CCCTCCGTCCCATAATGTAAGTC | 60.244 | 52.174 | 0.00 | 0.00 | 0.00 | 3.01 |
3006 | 3085 | 2.704065 | CCCTCCGTCCCATAATGTAAGT | 59.296 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
3007 | 3086 | 2.969950 | TCCCTCCGTCCCATAATGTAAG | 59.030 | 50.000 | 0.00 | 0.00 | 0.00 | 2.34 |
3008 | 3087 | 2.969950 | CTCCCTCCGTCCCATAATGTAA | 59.030 | 50.000 | 0.00 | 0.00 | 0.00 | 2.41 |
3009 | 3088 | 2.090943 | ACTCCCTCCGTCCCATAATGTA | 60.091 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3010 | 3089 | 1.344087 | ACTCCCTCCGTCCCATAATGT | 60.344 | 52.381 | 0.00 | 0.00 | 0.00 | 2.71 |
3011 | 3090 | 1.424638 | ACTCCCTCCGTCCCATAATG | 58.575 | 55.000 | 0.00 | 0.00 | 0.00 | 1.90 |
3012 | 3091 | 2.179424 | ACTACTCCCTCCGTCCCATAAT | 59.821 | 50.000 | 0.00 | 0.00 | 0.00 | 1.28 |
3013 | 3092 | 1.572415 | ACTACTCCCTCCGTCCCATAA | 59.428 | 52.381 | 0.00 | 0.00 | 0.00 | 1.90 |
3014 | 3093 | 1.229131 | ACTACTCCCTCCGTCCCATA | 58.771 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
3015 | 3094 | 0.338814 | AACTACTCCCTCCGTCCCAT | 59.661 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3016 | 3095 | 0.324091 | GAACTACTCCCTCCGTCCCA | 60.324 | 60.000 | 0.00 | 0.00 | 0.00 | 4.37 |
3017 | 3096 | 0.033306 | AGAACTACTCCCTCCGTCCC | 60.033 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
3018 | 3097 | 1.750206 | GAAGAACTACTCCCTCCGTCC | 59.250 | 57.143 | 0.00 | 0.00 | 0.00 | 4.79 |
3019 | 3098 | 2.424246 | CTGAAGAACTACTCCCTCCGTC | 59.576 | 54.545 | 0.00 | 0.00 | 0.00 | 4.79 |
3020 | 3099 | 2.448453 | CTGAAGAACTACTCCCTCCGT | 58.552 | 52.381 | 0.00 | 0.00 | 0.00 | 4.69 |
3021 | 3100 | 1.135333 | GCTGAAGAACTACTCCCTCCG | 59.865 | 57.143 | 0.00 | 0.00 | 0.00 | 4.63 |
3022 | 3101 | 2.462723 | AGCTGAAGAACTACTCCCTCC | 58.537 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
3023 | 3102 | 5.862678 | AATAGCTGAAGAACTACTCCCTC | 57.137 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
3024 | 3103 | 6.898521 | ACTAAATAGCTGAAGAACTACTCCCT | 59.101 | 38.462 | 0.00 | 0.00 | 0.00 | 4.20 |
3025 | 3104 | 7.114866 | ACTAAATAGCTGAAGAACTACTCCC | 57.885 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3026 | 3105 | 8.471609 | AGAACTAAATAGCTGAAGAACTACTCC | 58.528 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
3027 | 3106 | 9.296400 | CAGAACTAAATAGCTGAAGAACTACTC | 57.704 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
3028 | 3107 | 8.808092 | ACAGAACTAAATAGCTGAAGAACTACT | 58.192 | 33.333 | 0.00 | 0.00 | 32.86 | 2.57 |
3029 | 3108 | 8.989653 | ACAGAACTAAATAGCTGAAGAACTAC | 57.010 | 34.615 | 0.00 | 0.00 | 32.86 | 2.73 |
3030 | 3109 | 9.640963 | GAACAGAACTAAATAGCTGAAGAACTA | 57.359 | 33.333 | 0.00 | 0.00 | 32.86 | 2.24 |
3114 | 3193 | 5.303971 | CCCTGCCATAAACAACAAATTTGA | 58.696 | 37.500 | 24.64 | 1.13 | 0.00 | 2.69 |
3123 | 3202 | 1.133009 | ACCAACCCCTGCCATAAACAA | 60.133 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
3379 | 3458 | 3.450817 | TCATTAAGGATCGCACTTCTGGA | 59.549 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
3472 | 3561 | 4.748679 | CTGCAAGAACGGCGCTGC | 62.749 | 66.667 | 18.15 | 13.45 | 34.07 | 5.25 |
3527 | 3616 | 3.632189 | GACACAAAGAACACATCCAAGC | 58.368 | 45.455 | 0.00 | 0.00 | 0.00 | 4.01 |
3938 | 4073 | 5.109210 | CGCTCATGACCTGTCAAGTAAATA | 58.891 | 41.667 | 3.79 | 0.00 | 43.58 | 1.40 |
4121 | 4322 | 9.197694 | GATATTGAAGTACGATCACTAAGCAAT | 57.802 | 33.333 | 4.18 | 0.00 | 33.39 | 3.56 |
4315 | 4517 | 7.810658 | AGTTTGTAACAAGCAGAATCATGTAG | 58.189 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
4355 | 4557 | 8.328146 | CAAACATAGTAGGTTGAATGATGTACG | 58.672 | 37.037 | 0.13 | 0.00 | 0.00 | 3.67 |
4362 | 4564 | 7.148755 | GCAAAAGCAAACATAGTAGGTTGAATG | 60.149 | 37.037 | 0.13 | 0.00 | 0.00 | 2.67 |
4465 | 4667 | 7.433708 | TGTTACCTTGAACATTATGACACTG | 57.566 | 36.000 | 0.00 | 0.00 | 34.40 | 3.66 |
4596 | 4798 | 6.020916 | CGATTCTAAAAGCAATTCACTGCATG | 60.021 | 38.462 | 0.00 | 0.00 | 45.18 | 4.06 |
4622 | 4824 | 2.656947 | AAGGGCACTTCAGCAAGTAA | 57.343 | 45.000 | 0.00 | 0.00 | 41.24 | 2.24 |
4637 | 4839 | 6.038714 | GTGAGATAAGATAACTGCCAAAAGGG | 59.961 | 42.308 | 0.00 | 0.00 | 40.85 | 3.95 |
4644 | 4846 | 6.116126 | ACTTTGGTGAGATAAGATAACTGCC | 58.884 | 40.000 | 0.00 | 0.00 | 0.00 | 4.85 |
4679 | 4881 | 6.501781 | CCCTTTATTCAGACTGCATTCAATC | 58.498 | 40.000 | 6.84 | 0.00 | 0.00 | 2.67 |
4688 | 4890 | 2.715046 | TGCTGCCCTTTATTCAGACTG | 58.285 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
4689 | 4891 | 3.439857 | TTGCTGCCCTTTATTCAGACT | 57.560 | 42.857 | 0.00 | 0.00 | 0.00 | 3.24 |
4696 | 4898 | 3.031013 | GGGTAACATTGCTGCCCTTTAT | 58.969 | 45.455 | 6.01 | 0.00 | 36.49 | 1.40 |
4731 | 4933 | 5.591099 | TCTCTCAAACAGAAAATTGGTTGC | 58.409 | 37.500 | 0.00 | 0.00 | 43.74 | 4.17 |
4835 | 5037 | 7.660208 | GGATTGTCCTAGACTGAAAAACACTAA | 59.340 | 37.037 | 0.00 | 0.00 | 32.53 | 2.24 |
4836 | 5038 | 7.159372 | GGATTGTCCTAGACTGAAAAACACTA | 58.841 | 38.462 | 0.00 | 0.00 | 32.53 | 2.74 |
4837 | 5039 | 5.998363 | GGATTGTCCTAGACTGAAAAACACT | 59.002 | 40.000 | 0.00 | 0.00 | 32.53 | 3.55 |
4840 | 5042 | 6.877611 | TTGGATTGTCCTAGACTGAAAAAC | 57.122 | 37.500 | 0.00 | 0.00 | 37.46 | 2.43 |
4844 | 5046 | 6.549736 | TCGATATTGGATTGTCCTAGACTGAA | 59.450 | 38.462 | 0.00 | 0.00 | 37.46 | 3.02 |
4846 | 5048 | 6.332735 | TCGATATTGGATTGTCCTAGACTG | 57.667 | 41.667 | 0.00 | 0.00 | 37.46 | 3.51 |
4973 | 5177 | 6.808704 | GGGCTTGAAACAAGAAGATGAATTAC | 59.191 | 38.462 | 14.44 | 0.00 | 0.00 | 1.89 |
4998 | 5202 | 3.480470 | ACAAGAAGACTGTTGTCCATGG | 58.520 | 45.455 | 4.97 | 4.97 | 43.91 | 3.66 |
4999 | 5203 | 5.066375 | TGAAACAAGAAGACTGTTGTCCATG | 59.934 | 40.000 | 4.37 | 0.00 | 43.91 | 3.66 |
5000 | 5204 | 5.192927 | TGAAACAAGAAGACTGTTGTCCAT | 58.807 | 37.500 | 4.37 | 0.00 | 43.91 | 3.41 |
5002 | 5206 | 4.496507 | GCTGAAACAAGAAGACTGTTGTCC | 60.497 | 45.833 | 4.37 | 1.99 | 43.91 | 4.02 |
5004 | 5208 | 4.009675 | TGCTGAAACAAGAAGACTGTTGT | 58.990 | 39.130 | 0.00 | 0.00 | 38.56 | 3.32 |
5005 | 5209 | 4.346129 | GTGCTGAAACAAGAAGACTGTTG | 58.654 | 43.478 | 0.00 | 0.00 | 0.00 | 3.33 |
5006 | 5210 | 3.378427 | GGTGCTGAAACAAGAAGACTGTT | 59.622 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
5007 | 5211 | 2.945668 | GGTGCTGAAACAAGAAGACTGT | 59.054 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
5008 | 5212 | 2.291741 | GGGTGCTGAAACAAGAAGACTG | 59.708 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
5009 | 5213 | 2.576615 | GGGTGCTGAAACAAGAAGACT | 58.423 | 47.619 | 0.00 | 0.00 | 0.00 | 3.24 |
5010 | 5214 | 1.264288 | CGGGTGCTGAAACAAGAAGAC | 59.736 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
5011 | 5215 | 1.593196 | CGGGTGCTGAAACAAGAAGA | 58.407 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
5012 | 5216 | 0.593128 | CCGGGTGCTGAAACAAGAAG | 59.407 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
5013 | 5217 | 0.106918 | ACCGGGTGCTGAAACAAGAA | 60.107 | 50.000 | 6.32 | 0.00 | 0.00 | 2.52 |
5014 | 5218 | 0.759959 | TACCGGGTGCTGAAACAAGA | 59.240 | 50.000 | 10.66 | 0.00 | 0.00 | 3.02 |
5015 | 5219 | 1.600023 | TTACCGGGTGCTGAAACAAG | 58.400 | 50.000 | 10.66 | 0.00 | 0.00 | 3.16 |
5016 | 5220 | 2.156098 | GATTACCGGGTGCTGAAACAA | 58.844 | 47.619 | 10.66 | 0.00 | 0.00 | 2.83 |
5017 | 5221 | 1.349688 | AGATTACCGGGTGCTGAAACA | 59.650 | 47.619 | 10.66 | 0.00 | 0.00 | 2.83 |
5018 | 5222 | 2.109425 | AGATTACCGGGTGCTGAAAC | 57.891 | 50.000 | 10.66 | 0.00 | 0.00 | 2.78 |
5019 | 5223 | 3.985019 | TTAGATTACCGGGTGCTGAAA | 57.015 | 42.857 | 10.66 | 0.00 | 0.00 | 2.69 |
5020 | 5224 | 4.497291 | AATTAGATTACCGGGTGCTGAA | 57.503 | 40.909 | 10.66 | 0.00 | 0.00 | 3.02 |
5028 | 5232 | 3.493503 | GGCACGAGAAATTAGATTACCGG | 59.506 | 47.826 | 0.00 | 0.00 | 0.00 | 5.28 |
5031 | 5235 | 4.025979 | CCGTGGCACGAGAAATTAGATTAC | 60.026 | 45.833 | 38.91 | 0.00 | 46.05 | 1.89 |
5045 | 5249 | 1.858458 | CATAATAGTGACCGTGGCACG | 59.142 | 52.381 | 31.78 | 31.78 | 41.04 | 5.34 |
5052 | 5256 | 4.631131 | TCAAGATGGCATAATAGTGACCG | 58.369 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
5117 | 5321 | 8.031864 | TCAAGTTTAGCAGAAACATTTGTTGAA | 58.968 | 29.630 | 14.48 | 1.77 | 38.44 | 2.69 |
5134 | 5338 | 3.270877 | ACCGGCAGCTTATCAAGTTTAG | 58.729 | 45.455 | 0.00 | 0.00 | 0.00 | 1.85 |
5147 | 5351 | 0.101759 | TATACGACAAGACCGGCAGC | 59.898 | 55.000 | 0.00 | 0.00 | 0.00 | 5.25 |
5156 | 5361 | 7.409449 | GCATTATCGCTAACTGTATACGACAAG | 60.409 | 40.741 | 0.00 | 0.00 | 37.70 | 3.16 |
5167 | 5372 | 7.767745 | ATATCATGAGCATTATCGCTAACTG | 57.232 | 36.000 | 0.09 | 0.00 | 44.01 | 3.16 |
5197 | 5403 | 5.986135 | CCTGCAAGCAAGTACTATTAGTAGG | 59.014 | 44.000 | 3.75 | 0.61 | 30.12 | 3.18 |
5378 | 5584 | 9.609346 | GCCAGAAAGTTAGAAGTTACCAATATA | 57.391 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
5379 | 5585 | 8.107095 | TGCCAGAAAGTTAGAAGTTACCAATAT | 58.893 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
5380 | 5586 | 7.455058 | TGCCAGAAAGTTAGAAGTTACCAATA | 58.545 | 34.615 | 0.00 | 0.00 | 0.00 | 1.90 |
5381 | 5587 | 6.303839 | TGCCAGAAAGTTAGAAGTTACCAAT | 58.696 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5506 | 5712 | 1.194781 | TTGGTGACCTCAGAGGGAGC | 61.195 | 60.000 | 21.31 | 15.70 | 42.62 | 4.70 |
5727 | 5938 | 5.452077 | CCATACCGGTTCCTCAAAAACAAAA | 60.452 | 40.000 | 15.04 | 0.00 | 0.00 | 2.44 |
5841 | 6052 | 0.040204 | AGGGGTGAAAGAGGCAATGG | 59.960 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5846 | 6058 | 0.110486 | TCAACAGGGGTGAAAGAGGC | 59.890 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
5857 | 6069 | 5.587388 | AATAATGTGCAGATTCAACAGGG | 57.413 | 39.130 | 13.03 | 0.00 | 0.00 | 4.45 |
5858 | 6070 | 7.318141 | AGAAAATAATGTGCAGATTCAACAGG | 58.682 | 34.615 | 13.03 | 0.00 | 0.00 | 4.00 |
5872 | 6084 | 8.055181 | ACATCACCACCTATGAGAAAATAATGT | 58.945 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
5875 | 6087 | 8.328758 | AGAACATCACCACCTATGAGAAAATAA | 58.671 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
5887 | 6099 | 2.624838 | CAAGCAAAGAACATCACCACCT | 59.375 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
5911 | 6123 | 0.742505 | AACGGAGCATTGCCATCATG | 59.257 | 50.000 | 4.70 | 0.00 | 0.00 | 3.07 |
5913 | 6125 | 0.527113 | CAAACGGAGCATTGCCATCA | 59.473 | 50.000 | 4.70 | 0.00 | 0.00 | 3.07 |
5914 | 6126 | 0.803380 | GCAAACGGAGCATTGCCATC | 60.803 | 55.000 | 4.70 | 0.00 | 44.43 | 3.51 |
6016 | 6229 | 5.509832 | AGGTTACAGGGTTAGTTAAAGGG | 57.490 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
6031 | 6244 | 4.594123 | TTGATGAGACGACAAGGTTACA | 57.406 | 40.909 | 0.00 | 0.00 | 0.00 | 2.41 |
6040 | 6253 | 2.489971 | TGTTGGGTTTGATGAGACGAC | 58.510 | 47.619 | 0.00 | 0.00 | 0.00 | 4.34 |
6088 | 6303 | 1.282738 | TCCTTCATGCTCAGCCATTGA | 59.717 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
6102 | 6317 | 3.006967 | GCACCTTGTACTCTTCTCCTTCA | 59.993 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
6114 | 6329 | 4.871993 | CTGATCAATCAGCACCTTGTAC | 57.128 | 45.455 | 7.05 | 0.00 | 46.63 | 2.90 |
6126 | 6341 | 3.063180 | CGTCTTTGCTGGTCTGATCAATC | 59.937 | 47.826 | 0.00 | 0.00 | 0.00 | 2.67 |
6129 | 6344 | 1.941209 | GCGTCTTTGCTGGTCTGATCA | 60.941 | 52.381 | 0.00 | 0.00 | 0.00 | 2.92 |
6159 | 6374 | 0.667487 | CATCGTCTGCGTCTTGGTGT | 60.667 | 55.000 | 0.00 | 0.00 | 39.49 | 4.16 |
6171 | 6386 | 1.213013 | GTCAGCGTCACCATCGTCT | 59.787 | 57.895 | 0.00 | 0.00 | 0.00 | 4.18 |
6180 | 6395 | 2.643272 | GAGGTGTCGTCAGCGTCA | 59.357 | 61.111 | 6.22 | 0.00 | 45.42 | 4.35 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.