Multiple sequence alignment - TraesCS3B01G440700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G440700 chr3B 100.000 5841 0 0 1 5841 680336554 680330714 0.000000e+00 10787.0
1 TraesCS3B01G440700 chr3A 93.438 4145 196 37 765 4852 652774612 652778737 0.000000e+00 6078.0
2 TraesCS3B01G440700 chr3A 88.124 741 60 15 60 780 652773865 652774597 0.000000e+00 856.0
3 TraesCS3B01G440700 chr3A 85.470 234 25 7 5124 5353 652779359 652779587 9.790000e-58 235.0
4 TraesCS3B01G440700 chr3D 92.054 2152 124 30 3255 5367 516963417 516965560 0.000000e+00 2983.0
5 TraesCS3B01G440700 chr3D 93.730 1260 59 10 2003 3247 516962001 516963255 0.000000e+00 1871.0
6 TraesCS3B01G440700 chr3D 91.694 1240 57 16 765 1974 516960782 516962005 0.000000e+00 1677.0
7 TraesCS3B01G440700 chr3D 93.300 791 28 6 1 780 516959991 516960767 0.000000e+00 1144.0
8 TraesCS3B01G440700 chr5B 96.017 477 10 2 5368 5835 707468258 707467782 0.000000e+00 767.0
9 TraesCS3B01G440700 chr5B 87.143 70 7 2 1 69 599332288 599332220 1.750000e-10 78.7
10 TraesCS3B01G440700 chr2A 94.561 478 20 4 5368 5841 111441395 111441870 0.000000e+00 734.0
11 TraesCS3B01G440700 chr2A 83.558 371 52 8 1 365 464291928 464291561 7.250000e-89 339.0
12 TraesCS3B01G440700 chr6B 93.139 481 18 5 5368 5841 46627173 46627645 0.000000e+00 691.0
13 TraesCS3B01G440700 chr6B 92.105 418 21 11 5368 5778 482826491 482826079 3.920000e-161 579.0
14 TraesCS3B01G440700 chr6A 92.678 478 16 6 5368 5841 33375982 33376444 0.000000e+00 671.0
15 TraesCS3B01G440700 chr6A 92.288 389 21 9 5368 5752 158422418 158422035 1.430000e-150 544.0
16 TraesCS3B01G440700 chr5A 91.866 418 22 11 5368 5778 641774210 641773798 1.830000e-159 573.0
17 TraesCS3B01G440700 chr5A 84.677 372 46 7 1 364 602265709 602265341 1.550000e-95 361.0
18 TraesCS3B01G440700 chr7B 92.138 407 20 4 5368 5770 628737691 628738089 1.100000e-156 564.0
19 TraesCS3B01G440700 chr7B 92.231 399 21 9 5368 5761 75060401 75060008 1.840000e-154 556.0
20 TraesCS3B01G440700 chr7B 87.302 504 30 20 5368 5841 11634192 11634691 3.980000e-151 545.0
21 TraesCS3B01G440700 chr5D 84.409 372 45 8 1 364 482458102 482457736 2.590000e-93 353.0
22 TraesCS3B01G440700 chr7A 79.620 368 59 8 61 426 15280663 15281016 3.490000e-62 250.0
23 TraesCS3B01G440700 chr7A 73.846 325 47 14 1 310 547334954 547335255 1.730000e-15 95.3
24 TraesCS3B01G440700 chr4A 75.467 375 59 17 1 367 130977831 130977482 1.010000e-32 152.0
25 TraesCS3B01G440700 chr2B 90.141 71 6 1 89 159 770221320 770221251 2.240000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G440700 chr3B 680330714 680336554 5840 True 10787.000000 10787 100.000000 1 5841 1 chr3B.!!$R1 5840
1 TraesCS3B01G440700 chr3A 652773865 652779587 5722 False 2389.666667 6078 89.010667 60 5353 3 chr3A.!!$F1 5293
2 TraesCS3B01G440700 chr3D 516959991 516965560 5569 False 1918.750000 2983 92.694500 1 5367 4 chr3D.!!$F1 5366

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
420 431 0.307760 GCGGGATGTGATTTTAGCGG 59.692 55.000 0.00 0.0 0.00 5.52 F
562 583 0.389757 GCTCCTAGGTCATTCGGGAC 59.610 60.000 9.08 0.0 37.06 4.46 F
1018 1081 1.400846 GAATGTACTCCGTGCTCTCGA 59.599 52.381 0.00 0.0 0.00 4.04 F
1887 1974 2.614057 CCTGTTGGTCACTGTTTCACTC 59.386 50.000 0.00 0.0 0.00 3.51 F
3136 3259 1.733041 ACACCGTCAATGAGCGTCG 60.733 57.895 4.99 0.0 0.00 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1502 1571 1.134670 GCAGAATGGCTAAGAGACCGT 60.135 52.381 0.00 0.00 35.86 4.83 R
1579 1655 2.622942 TGGGAAGTTCAATTCAGCACAC 59.377 45.455 5.01 0.00 0.00 3.82 R
2233 2333 2.738743 ACAACAGCAATAATCAGGGGG 58.261 47.619 0.00 0.00 0.00 5.40 R
3416 3697 1.134907 CAGGGGAACGTGCGTAGTATT 60.135 52.381 0.00 0.00 39.65 1.89 R
4852 5146 0.107456 CGGGAGGGCTCTACGTAGTA 59.893 60.000 21.53 8.29 45.11 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 105 5.079689 CCCCCATTTGTTGTGGTATTAAC 57.920 43.478 0.00 0.00 34.87 2.01
333 344 6.568844 GCGGGACAAGTTTACATGATTTGTTA 60.569 38.462 0.00 0.00 39.87 2.41
362 373 0.672401 CCTCACGGTACCGCATTTGT 60.672 55.000 33.62 10.87 44.19 2.83
363 374 1.153353 CTCACGGTACCGCATTTGTT 58.847 50.000 33.62 10.05 44.19 2.83
364 375 1.533731 CTCACGGTACCGCATTTGTTT 59.466 47.619 33.62 9.23 44.19 2.83
390 401 1.173043 TCTTTTACATGCGGCCCTTG 58.827 50.000 0.00 1.19 0.00 3.61
420 431 0.307760 GCGGGATGTGATTTTAGCGG 59.692 55.000 0.00 0.00 0.00 5.52
452 472 3.515562 AGAGTTTCATCAGAGGTCCTGT 58.484 45.455 0.00 0.00 43.38 4.00
453 473 4.678256 AGAGTTTCATCAGAGGTCCTGTA 58.322 43.478 0.00 0.00 43.38 2.74
507 528 5.773091 AGTTTTCTTTGGGGTCCTTCTAAA 58.227 37.500 0.00 0.00 0.00 1.85
562 583 0.389757 GCTCCTAGGTCATTCGGGAC 59.610 60.000 9.08 0.00 37.06 4.46
613 634 3.449018 ACAACAAGCTCGATGACTAGGAT 59.551 43.478 0.00 0.00 0.00 3.24
1018 1081 1.400846 GAATGTACTCCGTGCTCTCGA 59.599 52.381 0.00 0.00 0.00 4.04
1061 1124 3.137913 AGCCGTCTCCAGGTACTAATAGA 59.862 47.826 0.00 0.00 36.02 1.98
1502 1571 2.689983 GTCTCTATTTCCCGTCGGGTTA 59.310 50.000 29.31 18.47 44.74 2.85
1556 1632 6.098266 ACCCACTCTTGTTTAAATTGCTCTTT 59.902 34.615 0.00 0.00 0.00 2.52
1563 1639 5.997385 TGTTTAAATTGCTCTTTCTCGACC 58.003 37.500 0.00 0.00 0.00 4.79
1579 1655 3.977427 TCGACCCTACATTCATCATTCG 58.023 45.455 0.00 0.00 0.00 3.34
1674 1757 7.468141 TGCTTATACATAGGTGATAGACTGG 57.532 40.000 0.00 0.00 0.00 4.00
1691 1774 5.738909 AGACTGGTAGATTTGGAATGTCAG 58.261 41.667 0.00 0.00 0.00 3.51
1727 1810 9.950680 TTGAAGTTGATTCTTAATTTCTGTCAC 57.049 29.630 0.00 0.00 38.83 3.67
1809 1896 6.984474 CCTCTTCTTGTTAGAGTGTGTGTTAA 59.016 38.462 0.00 0.00 37.93 2.01
1812 1899 8.038944 TCTTCTTGTTAGAGTGTGTGTTAAGTT 58.961 33.333 0.00 0.00 0.00 2.66
1814 1901 7.970384 TCTTGTTAGAGTGTGTGTTAAGTTTG 58.030 34.615 0.00 0.00 0.00 2.93
1843 1930 2.981898 TGTCTGACAGATGCTTCCATG 58.018 47.619 8.73 0.00 0.00 3.66
1887 1974 2.614057 CCTGTTGGTCACTGTTTCACTC 59.386 50.000 0.00 0.00 0.00 3.51
2143 2242 6.734137 TGTTCATTCTTGTTTCAAGCGTATT 58.266 32.000 4.82 0.00 0.00 1.89
2147 2246 8.492673 TCATTCTTGTTTCAAGCGTATTATCT 57.507 30.769 4.82 0.00 0.00 1.98
2153 2252 6.394809 TGTTTCAAGCGTATTATCTGAGTCA 58.605 36.000 0.00 0.00 0.00 3.41
2233 2333 4.339530 TGTAGTGAGTGGTGCTATCTCATC 59.660 45.833 0.00 0.00 39.77 2.92
2235 2335 2.042464 TGAGTGGTGCTATCTCATCCC 58.958 52.381 0.00 0.00 34.00 3.85
2265 2365 2.559440 TGCTGTTGTTTGGGAATTTGC 58.441 42.857 0.00 0.00 0.00 3.68
2291 2391 7.653713 CAGTCACTGTTCACTTTGTAGAGTATT 59.346 37.037 0.00 0.00 0.00 1.89
2292 2392 8.857098 AGTCACTGTTCACTTTGTAGAGTATTA 58.143 33.333 0.00 0.00 0.00 0.98
2293 2393 9.130312 GTCACTGTTCACTTTGTAGAGTATTAG 57.870 37.037 0.00 0.00 0.00 1.73
2294 2394 7.813148 TCACTGTTCACTTTGTAGAGTATTAGC 59.187 37.037 0.00 0.00 0.00 3.09
2296 2396 8.030106 ACTGTTCACTTTGTAGAGTATTAGCTC 58.970 37.037 0.00 0.00 35.82 4.09
2297 2397 7.321153 TGTTCACTTTGTAGAGTATTAGCTCC 58.679 38.462 0.00 0.00 36.20 4.70
2298 2398 7.178628 TGTTCACTTTGTAGAGTATTAGCTCCT 59.821 37.037 0.00 0.00 36.20 3.69
2299 2399 8.684520 GTTCACTTTGTAGAGTATTAGCTCCTA 58.315 37.037 0.00 0.00 36.20 2.94
2302 2402 9.339850 CACTTTGTAGAGTATTAGCTCCTACTA 57.660 37.037 7.83 0.00 36.20 1.82
2305 2405 9.917887 TTTGTAGAGTATTAGCTCCTACTACTT 57.082 33.333 7.83 1.95 34.23 2.24
2307 2407 8.712103 TGTAGAGTATTAGCTCCTACTACTTCA 58.288 37.037 7.83 8.24 34.23 3.02
2308 2408 9.558396 GTAGAGTATTAGCTCCTACTACTTCAA 57.442 37.037 7.83 0.00 34.23 2.69
2525 2640 8.352942 ACATTTTCCTACACTCATTTTTCTGTC 58.647 33.333 0.00 0.00 0.00 3.51
2597 2712 8.806429 ACATTGGTTACATTCTGATGTTCATA 57.194 30.769 0.00 0.00 43.92 2.15
2715 2830 5.597594 GCTTGGGTTGTACTAGATAGGTACT 59.402 44.000 0.00 0.00 46.37 2.73
2721 2836 7.146648 GGTTGTACTAGATAGGTACTTGCATC 58.853 42.308 0.00 0.00 41.75 3.91
2752 2869 8.789825 TTGTTTAATCATTTTTGGCATGCTAT 57.210 26.923 18.92 0.00 0.00 2.97
2753 2870 9.881649 TTGTTTAATCATTTTTGGCATGCTATA 57.118 25.926 18.92 3.42 0.00 1.31
2761 2878 8.359642 TCATTTTTGGCATGCTATATTCCTAAC 58.640 33.333 18.92 0.00 0.00 2.34
2791 2914 8.531530 GCATTTGTTTGTTCAGTAGTTAAACTG 58.468 33.333 1.48 1.48 46.78 3.16
2798 2921 9.616156 TTTGTTCAGTAGTTAAACTGGTATTGA 57.384 29.630 7.32 0.00 45.69 2.57
2948 3071 3.269381 TCAAGCAAAAGTATGGGGGAGAT 59.731 43.478 0.00 0.00 0.00 2.75
3136 3259 1.733041 ACACCGTCAATGAGCGTCG 60.733 57.895 4.99 0.00 0.00 5.12
3225 3348 9.443283 CAATCATAAAGTTGCAACTAGCTTATC 57.557 33.333 31.31 0.78 45.94 1.75
3287 3564 8.291032 GCTTAAAAGGTAGAAAAGGTCTTTCTC 58.709 37.037 3.12 0.00 39.30 2.87
3320 3601 5.417894 AGCTCATTCATGCAGAATTCAAGAA 59.582 36.000 8.44 4.63 44.48 2.52
3324 3605 7.088272 TCATTCATGCAGAATTCAAGAACTTG 58.912 34.615 8.44 8.09 44.48 3.16
3377 3658 6.387041 AGCTGTAGTTTTACCTTCCAAAAC 57.613 37.500 3.15 3.15 43.20 2.43
3440 3721 1.252215 TACGCACGTTCCCCTGATCA 61.252 55.000 0.00 0.00 0.00 2.92
3751 4032 3.741476 GTGCTCAGCTTTGCCCGG 61.741 66.667 0.00 0.00 0.00 5.73
3921 4202 4.765339 GGTGACAAGCATAACCTTACCTTT 59.235 41.667 0.00 0.00 0.00 3.11
3929 4210 5.183904 AGCATAACCTTACCTTTGCTCTTTG 59.816 40.000 0.00 0.00 35.66 2.77
3962 4243 4.226427 TGATGAAATAGACAAGGCAGCT 57.774 40.909 0.00 0.00 0.00 4.24
4025 4306 4.426112 GCAAAGGGGCTGCGCTTC 62.426 66.667 16.51 0.00 0.00 3.86
4040 4321 1.818642 GCTTCCTGCATGAAGAGTGT 58.181 50.000 29.15 0.00 43.60 3.55
4043 4324 0.969149 TCCTGCATGAAGAGTGTCGT 59.031 50.000 0.74 0.00 0.00 4.34
4089 4370 1.137404 CGCCCAAGCAATGTACTGC 59.863 57.895 0.00 0.00 42.97 4.40
4184 4465 5.989168 TCATGAGTTCTGTTGTGATTACGTT 59.011 36.000 0.00 0.00 0.00 3.99
4209 4490 3.670105 TCCACAGCTTGGGGATTTC 57.330 52.632 12.99 0.00 46.95 2.17
4239 4520 1.927487 AATGGAAGGCTGTCAATGCA 58.073 45.000 0.00 0.00 0.00 3.96
4274 4555 0.967380 GTTCTGGGGCAATCAGGGTG 60.967 60.000 0.00 0.00 33.36 4.61
4279 4560 1.076485 GGGCAATCAGGGTGAGCAT 60.076 57.895 0.00 0.00 0.00 3.79
4288 4569 5.957771 ATCAGGGTGAGCATAAAACTCTA 57.042 39.130 0.00 0.00 35.12 2.43
4289 4570 5.344743 TCAGGGTGAGCATAAAACTCTAG 57.655 43.478 0.00 0.00 35.12 2.43
4290 4571 4.777896 TCAGGGTGAGCATAAAACTCTAGT 59.222 41.667 0.00 0.00 35.12 2.57
4291 4572 5.248477 TCAGGGTGAGCATAAAACTCTAGTT 59.752 40.000 0.00 0.00 40.50 2.24
4292 4573 5.582665 CAGGGTGAGCATAAAACTCTAGTTC 59.417 44.000 0.00 0.00 37.25 3.01
4293 4574 5.485708 AGGGTGAGCATAAAACTCTAGTTCT 59.514 40.000 0.00 0.00 37.25 3.01
4294 4575 6.013293 AGGGTGAGCATAAAACTCTAGTTCTT 60.013 38.462 0.00 0.00 37.25 2.52
4295 4576 6.314152 GGGTGAGCATAAAACTCTAGTTCTTC 59.686 42.308 0.00 0.00 37.25 2.87
4296 4577 6.314152 GGTGAGCATAAAACTCTAGTTCTTCC 59.686 42.308 0.00 0.00 37.25 3.46
4297 4578 6.874134 GTGAGCATAAAACTCTAGTTCTTCCA 59.126 38.462 0.00 0.00 37.25 3.53
4298 4579 7.387948 GTGAGCATAAAACTCTAGTTCTTCCAA 59.612 37.037 0.00 0.00 37.25 3.53
4299 4580 8.103305 TGAGCATAAAACTCTAGTTCTTCCAAT 58.897 33.333 0.00 0.00 37.25 3.16
4503 4786 1.066858 GTGCTCGAGGAACATGAAGGA 60.067 52.381 15.58 0.00 0.00 3.36
4579 4871 6.307155 CAACTTGCTTACAGTATACTTGCAC 58.693 40.000 15.00 2.33 0.00 4.57
4714 5006 0.317799 ATCATCTAGCCAGAGCAGCG 59.682 55.000 0.00 0.00 43.56 5.18
4753 5045 4.697756 CCGGAACAGCGGCCTTCA 62.698 66.667 0.00 0.00 0.00 3.02
4831 5123 3.181487 CCCGACAATTCATCCCACATTTC 60.181 47.826 0.00 0.00 0.00 2.17
4834 5126 4.675146 CGACAATTCATCCCACATTTCACC 60.675 45.833 0.00 0.00 0.00 4.02
4852 5146 9.918630 CATTTCACCAAGTAAGAAAAATGAGAT 57.081 29.630 0.00 0.00 35.62 2.75
4867 5210 4.644163 ATGAGATACTACGTAGAGCCCT 57.356 45.455 28.74 17.73 0.00 5.19
4873 5216 2.335092 CTACGTAGAGCCCTCCCGGA 62.335 65.000 17.95 0.00 0.00 5.14
4886 5229 2.166829 CTCCCGGATGAGATACCTGAG 58.833 57.143 0.73 0.00 34.11 3.35
4890 5233 2.036475 CCGGATGAGATACCTGAGGTTG 59.964 54.545 10.53 0.00 37.09 3.77
4892 5235 2.224402 GGATGAGATACCTGAGGTTGGC 60.224 54.545 10.53 0.00 37.09 4.52
4893 5236 2.254152 TGAGATACCTGAGGTTGGCT 57.746 50.000 10.53 4.74 37.09 4.75
4895 5238 2.292521 TGAGATACCTGAGGTTGGCTCT 60.293 50.000 10.53 7.42 37.09 4.09
4896 5239 3.052869 TGAGATACCTGAGGTTGGCTCTA 60.053 47.826 10.53 3.35 37.09 2.43
4897 5240 3.571590 AGATACCTGAGGTTGGCTCTAG 58.428 50.000 10.53 0.00 37.09 2.43
4899 5242 1.562783 ACCTGAGGTTGGCTCTAGAC 58.437 55.000 0.00 0.00 27.29 2.59
4900 5243 0.457851 CCTGAGGTTGGCTCTAGACG 59.542 60.000 0.00 0.00 0.00 4.18
4901 5244 0.457851 CTGAGGTTGGCTCTAGACGG 59.542 60.000 0.00 0.00 0.00 4.79
4902 5245 0.970937 TGAGGTTGGCTCTAGACGGG 60.971 60.000 0.00 0.00 0.00 5.28
4903 5246 0.683504 GAGGTTGGCTCTAGACGGGA 60.684 60.000 0.00 0.00 0.00 5.14
4904 5247 0.684805 AGGTTGGCTCTAGACGGGAG 60.685 60.000 0.00 0.00 0.00 4.30
4947 5290 1.741770 GCCACTGCGACCTTACCAG 60.742 63.158 0.00 0.00 0.00 4.00
4977 5320 2.470821 ACGAAGTGAAGAAACAGTCCG 58.529 47.619 0.00 0.00 42.51 4.79
4985 5328 4.515567 GTGAAGAAACAGTCCGAGGAAATT 59.484 41.667 0.00 0.00 0.00 1.82
5025 5368 4.507710 TCGCTGAAGTTTCTATGATGCTT 58.492 39.130 0.00 0.00 0.00 3.91
5027 5370 4.330894 CGCTGAAGTTTCTATGATGCTTGA 59.669 41.667 0.00 0.00 0.00 3.02
5042 5385 2.630098 TGCTTGAAGAGGGATATCTCCG 59.370 50.000 0.00 0.00 43.11 4.63
5063 5406 1.011968 TTCTCACCGGTGAAATCGCG 61.012 55.000 35.36 23.26 39.39 5.87
5067 5410 2.025418 ACCGGTGAAATCGCGACAC 61.025 57.895 12.93 15.75 0.00 3.67
5068 5411 2.390288 CGGTGAAATCGCGACACG 59.610 61.111 12.93 8.23 45.62 4.49
5222 5888 0.897621 CCGTTCTACCCGGGTTACTT 59.102 55.000 35.42 9.04 41.78 2.24
5259 5925 1.035932 CCTGGCCCTCATCTTTGCTG 61.036 60.000 0.00 0.00 0.00 4.41
5260 5926 1.000521 TGGCCCTCATCTTTGCTGG 60.001 57.895 0.00 0.00 0.00 4.85
5261 5927 2.421399 GGCCCTCATCTTTGCTGGC 61.421 63.158 0.00 0.00 38.07 4.85
5262 5928 1.379576 GCCCTCATCTTTGCTGGCT 60.380 57.895 0.00 0.00 36.72 4.75
5263 5929 0.107017 GCCCTCATCTTTGCTGGCTA 60.107 55.000 0.00 0.00 36.72 3.93
5264 5930 1.964552 CCCTCATCTTTGCTGGCTAG 58.035 55.000 0.00 0.00 0.00 3.42
5265 5931 1.211457 CCCTCATCTTTGCTGGCTAGT 59.789 52.381 0.00 0.00 0.00 2.57
5268 5934 3.341823 CTCATCTTTGCTGGCTAGTGTT 58.658 45.455 0.00 0.00 0.00 3.32
5269 5935 3.338249 TCATCTTTGCTGGCTAGTGTTC 58.662 45.455 0.00 0.00 0.00 3.18
5270 5936 3.008375 TCATCTTTGCTGGCTAGTGTTCT 59.992 43.478 0.00 0.00 0.00 3.01
5273 5942 2.638480 TTGCTGGCTAGTGTTCTTGT 57.362 45.000 0.00 0.00 0.00 3.16
5278 5947 1.946768 TGGCTAGTGTTCTTGTTGTGC 59.053 47.619 0.00 0.00 0.00 4.57
5279 5948 1.946768 GGCTAGTGTTCTTGTTGTGCA 59.053 47.619 0.00 0.00 0.00 4.57
5285 5954 4.819769 AGTGTTCTTGTTGTGCATTTGTT 58.180 34.783 0.00 0.00 0.00 2.83
5305 5974 4.512944 TGTTGCTGTTGAAGAGTCTTGATC 59.487 41.667 10.90 1.48 0.00 2.92
5367 6037 3.308530 CGTTGAAATGTTTTCTCAGCCC 58.691 45.455 2.08 0.00 0.00 5.19
5368 6038 3.243367 CGTTGAAATGTTTTCTCAGCCCA 60.243 43.478 2.08 0.00 0.00 5.36
5369 6039 4.051237 GTTGAAATGTTTTCTCAGCCCAC 58.949 43.478 2.08 0.00 0.00 4.61
5370 6040 3.565307 TGAAATGTTTTCTCAGCCCACT 58.435 40.909 2.08 0.00 0.00 4.00
5371 6041 3.960102 TGAAATGTTTTCTCAGCCCACTT 59.040 39.130 2.08 0.00 0.00 3.16
5372 6042 4.037923 TGAAATGTTTTCTCAGCCCACTTC 59.962 41.667 2.08 0.00 0.00 3.01
5373 6043 3.515602 ATGTTTTCTCAGCCCACTTCT 57.484 42.857 0.00 0.00 0.00 2.85
5374 6044 3.297134 TGTTTTCTCAGCCCACTTCTT 57.703 42.857 0.00 0.00 0.00 2.52
5375 6045 3.214328 TGTTTTCTCAGCCCACTTCTTC 58.786 45.455 0.00 0.00 0.00 2.87
5376 6046 3.117888 TGTTTTCTCAGCCCACTTCTTCT 60.118 43.478 0.00 0.00 0.00 2.85
5377 6047 3.864789 TTTCTCAGCCCACTTCTTCTT 57.135 42.857 0.00 0.00 0.00 2.52
5378 6048 3.409026 TTCTCAGCCCACTTCTTCTTC 57.591 47.619 0.00 0.00 0.00 2.87
5379 6049 1.273606 TCTCAGCCCACTTCTTCTTCG 59.726 52.381 0.00 0.00 0.00 3.79
5380 6050 0.321671 TCAGCCCACTTCTTCTTCGG 59.678 55.000 0.00 0.00 0.00 4.30
5381 6051 0.035458 CAGCCCACTTCTTCTTCGGT 59.965 55.000 0.00 0.00 0.00 4.69
5382 6052 1.275291 CAGCCCACTTCTTCTTCGGTA 59.725 52.381 0.00 0.00 0.00 4.02
5383 6053 1.275573 AGCCCACTTCTTCTTCGGTAC 59.724 52.381 0.00 0.00 0.00 3.34
5384 6054 1.001633 GCCCACTTCTTCTTCGGTACA 59.998 52.381 0.00 0.00 0.00 2.90
5385 6055 2.549349 GCCCACTTCTTCTTCGGTACAA 60.549 50.000 0.00 0.00 0.00 2.41
5386 6056 3.064931 CCCACTTCTTCTTCGGTACAAC 58.935 50.000 0.00 0.00 0.00 3.32
5387 6057 3.064931 CCACTTCTTCTTCGGTACAACC 58.935 50.000 0.00 0.00 34.05 3.77
5388 6058 3.064931 CACTTCTTCTTCGGTACAACCC 58.935 50.000 0.00 0.00 33.75 4.11
5389 6059 2.038164 ACTTCTTCTTCGGTACAACCCC 59.962 50.000 0.00 0.00 33.75 4.95
5390 6060 0.978907 TCTTCTTCGGTACAACCCCC 59.021 55.000 0.00 0.00 33.75 5.40
5391 6061 0.981943 CTTCTTCGGTACAACCCCCT 59.018 55.000 0.00 0.00 33.75 4.79
5392 6062 0.688487 TTCTTCGGTACAACCCCCTG 59.312 55.000 0.00 0.00 33.75 4.45
5393 6063 0.178926 TCTTCGGTACAACCCCCTGA 60.179 55.000 0.00 0.00 33.75 3.86
5394 6064 0.688487 CTTCGGTACAACCCCCTGAA 59.312 55.000 0.00 0.00 33.75 3.02
5395 6065 1.072648 CTTCGGTACAACCCCCTGAAA 59.927 52.381 0.00 0.00 33.75 2.69
5396 6066 1.138568 TCGGTACAACCCCCTGAAAA 58.861 50.000 0.00 0.00 33.75 2.29
5397 6067 1.202794 TCGGTACAACCCCCTGAAAAC 60.203 52.381 0.00 0.00 33.75 2.43
5398 6068 1.477195 CGGTACAACCCCCTGAAAACA 60.477 52.381 0.00 0.00 33.75 2.83
5399 6069 2.816337 CGGTACAACCCCCTGAAAACAT 60.816 50.000 0.00 0.00 33.75 2.71
5400 6070 2.823747 GGTACAACCCCCTGAAAACATC 59.176 50.000 0.00 0.00 30.04 3.06
5401 6071 2.765689 ACAACCCCCTGAAAACATCA 57.234 45.000 0.00 0.00 36.38 3.07
5402 6072 3.039252 ACAACCCCCTGAAAACATCAA 57.961 42.857 0.00 0.00 37.67 2.57
5403 6073 2.698274 ACAACCCCCTGAAAACATCAAC 59.302 45.455 0.00 0.00 37.67 3.18
5404 6074 1.616159 ACCCCCTGAAAACATCAACG 58.384 50.000 0.00 0.00 37.67 4.10
5405 6075 0.887933 CCCCCTGAAAACATCAACGG 59.112 55.000 0.00 0.00 37.67 4.44
5406 6076 1.616159 CCCCTGAAAACATCAACGGT 58.384 50.000 0.00 0.00 37.67 4.83
5407 6077 1.539827 CCCCTGAAAACATCAACGGTC 59.460 52.381 0.00 0.00 37.67 4.79
5408 6078 1.539827 CCCTGAAAACATCAACGGTCC 59.460 52.381 0.00 0.00 37.67 4.46
5409 6079 2.226330 CCTGAAAACATCAACGGTCCA 58.774 47.619 0.00 0.00 37.67 4.02
5410 6080 2.226437 CCTGAAAACATCAACGGTCCAG 59.774 50.000 0.00 0.00 37.67 3.86
5411 6081 3.138304 CTGAAAACATCAACGGTCCAGA 58.862 45.455 0.00 0.00 37.67 3.86
5412 6082 3.750371 TGAAAACATCAACGGTCCAGAT 58.250 40.909 0.00 0.00 34.30 2.90
5413 6083 3.751175 TGAAAACATCAACGGTCCAGATC 59.249 43.478 0.00 0.00 34.30 2.75
5414 6084 2.010145 AACATCAACGGTCCAGATCG 57.990 50.000 0.00 0.00 41.46 3.69
5420 6090 3.823369 ACGGTCCAGATCGTCCTAT 57.177 52.632 0.00 0.00 46.40 2.57
5421 6091 2.945080 ACGGTCCAGATCGTCCTATA 57.055 50.000 0.00 0.00 46.40 1.31
5422 6092 2.502295 ACGGTCCAGATCGTCCTATAC 58.498 52.381 0.00 0.00 46.40 1.47
5423 6093 1.811359 CGGTCCAGATCGTCCTATACC 59.189 57.143 0.00 0.00 0.00 2.73
5424 6094 2.169330 GGTCCAGATCGTCCTATACCC 58.831 57.143 0.00 0.00 0.00 3.69
5425 6095 2.169330 GTCCAGATCGTCCTATACCCC 58.831 57.143 0.00 0.00 0.00 4.95
5426 6096 2.071372 TCCAGATCGTCCTATACCCCT 58.929 52.381 0.00 0.00 0.00 4.79
5427 6097 2.449730 TCCAGATCGTCCTATACCCCTT 59.550 50.000 0.00 0.00 0.00 3.95
5428 6098 2.826725 CCAGATCGTCCTATACCCCTTC 59.173 54.545 0.00 0.00 0.00 3.46
5429 6099 2.488545 CAGATCGTCCTATACCCCTTCG 59.511 54.545 0.00 0.00 0.00 3.79
5430 6100 1.201880 GATCGTCCTATACCCCTTCGC 59.798 57.143 0.00 0.00 0.00 4.70
5431 6101 0.825010 TCGTCCTATACCCCTTCGCC 60.825 60.000 0.00 0.00 0.00 5.54
5432 6102 0.826672 CGTCCTATACCCCTTCGCCT 60.827 60.000 0.00 0.00 0.00 5.52
5433 6103 0.680061 GTCCTATACCCCTTCGCCTG 59.320 60.000 0.00 0.00 0.00 4.85
5434 6104 0.559205 TCCTATACCCCTTCGCCTGA 59.441 55.000 0.00 0.00 0.00 3.86
5435 6105 1.062734 TCCTATACCCCTTCGCCTGAA 60.063 52.381 0.00 0.00 0.00 3.02
5436 6106 1.766496 CCTATACCCCTTCGCCTGAAA 59.234 52.381 0.00 0.00 32.66 2.69
5437 6107 2.171870 CCTATACCCCTTCGCCTGAAAA 59.828 50.000 0.00 0.00 32.66 2.29
5438 6108 2.124277 ATACCCCTTCGCCTGAAAAC 57.876 50.000 0.00 0.00 32.66 2.43
5439 6109 1.061546 TACCCCTTCGCCTGAAAACT 58.938 50.000 0.00 0.00 32.66 2.66
5440 6110 0.185175 ACCCCTTCGCCTGAAAACTT 59.815 50.000 0.00 0.00 32.66 2.66
5441 6111 1.422402 ACCCCTTCGCCTGAAAACTTA 59.578 47.619 0.00 0.00 32.66 2.24
5442 6112 2.158579 ACCCCTTCGCCTGAAAACTTAA 60.159 45.455 0.00 0.00 32.66 1.85
5443 6113 2.888414 CCCCTTCGCCTGAAAACTTAAA 59.112 45.455 0.00 0.00 32.66 1.52
5444 6114 3.319689 CCCCTTCGCCTGAAAACTTAAAA 59.680 43.478 0.00 0.00 32.66 1.52
5445 6115 4.202172 CCCCTTCGCCTGAAAACTTAAAAA 60.202 41.667 0.00 0.00 32.66 1.94
5464 6134 2.736670 AAGGGTAGGATGGTCATTGC 57.263 50.000 0.00 0.00 0.00 3.56
5465 6135 0.846693 AGGGTAGGATGGTCATTGCC 59.153 55.000 0.00 0.00 0.00 4.52
5466 6136 0.178990 GGGTAGGATGGTCATTGCCC 60.179 60.000 0.00 0.00 0.00 5.36
5467 6137 0.178990 GGTAGGATGGTCATTGCCCC 60.179 60.000 0.00 0.00 0.00 5.80
5468 6138 0.846693 GTAGGATGGTCATTGCCCCT 59.153 55.000 0.00 0.00 0.00 4.79
5469 6139 0.846015 TAGGATGGTCATTGCCCCTG 59.154 55.000 0.00 0.00 0.00 4.45
5470 6140 2.129785 GGATGGTCATTGCCCCTGC 61.130 63.158 0.00 0.00 38.26 4.85
5471 6141 2.042639 ATGGTCATTGCCCCTGCC 60.043 61.111 0.00 0.00 36.33 4.85
5472 6142 3.684369 ATGGTCATTGCCCCTGCCC 62.684 63.158 0.00 0.00 36.33 5.36
5474 6144 4.066139 GTCATTGCCCCTGCCCCT 62.066 66.667 0.00 0.00 36.33 4.79
5475 6145 3.743017 TCATTGCCCCTGCCCCTC 61.743 66.667 0.00 0.00 36.33 4.30
5476 6146 4.847367 CATTGCCCCTGCCCCTCC 62.847 72.222 0.00 0.00 36.33 4.30
5522 6192 4.842091 GCGCCCGTCGACGTATGT 62.842 66.667 33.49 0.00 41.67 2.29
5523 6193 2.708865 CGCCCGTCGACGTATGTA 59.291 61.111 33.49 0.00 41.67 2.29
5524 6194 1.652329 CGCCCGTCGACGTATGTAC 60.652 63.158 33.49 15.99 41.67 2.90
5535 6205 1.523501 CGTATGTACGTGTACGCGTT 58.476 50.000 35.98 22.31 43.04 4.84
5536 6206 1.904412 CGTATGTACGTGTACGCGTTT 59.096 47.619 35.98 23.37 43.04 3.60
5537 6207 2.338228 CGTATGTACGTGTACGCGTTTT 59.662 45.455 35.98 23.06 43.04 2.43
5538 6208 3.181554 CGTATGTACGTGTACGCGTTTTT 60.182 43.478 35.98 22.75 43.04 1.94
5558 6228 2.728690 TTTACTGTGGCGACATACGT 57.271 45.000 0.69 0.00 46.14 3.57
5559 6229 2.728690 TTACTGTGGCGACATACGTT 57.271 45.000 0.69 0.00 46.14 3.99
5560 6230 2.267188 TACTGTGGCGACATACGTTC 57.733 50.000 0.69 0.00 46.14 3.95
5561 6231 0.601558 ACTGTGGCGACATACGTTCT 59.398 50.000 0.69 0.00 46.14 3.01
5562 6232 1.000506 ACTGTGGCGACATACGTTCTT 59.999 47.619 0.69 0.00 46.14 2.52
5563 6233 2.066262 CTGTGGCGACATACGTTCTTT 58.934 47.619 0.69 0.00 46.14 2.52
5564 6234 2.478894 CTGTGGCGACATACGTTCTTTT 59.521 45.455 0.69 0.00 46.14 2.27
5565 6235 2.873472 TGTGGCGACATACGTTCTTTTT 59.127 40.909 0.00 0.00 46.14 1.94
5566 6236 4.056740 TGTGGCGACATACGTTCTTTTTA 58.943 39.130 0.00 0.00 46.14 1.52
5567 6237 4.084433 TGTGGCGACATACGTTCTTTTTAC 60.084 41.667 0.00 0.00 46.14 2.01
5568 6238 3.432933 TGGCGACATACGTTCTTTTTACC 59.567 43.478 0.00 0.00 44.60 2.85
5569 6239 3.482436 GGCGACATACGTTCTTTTTACCG 60.482 47.826 0.00 0.00 44.60 4.02
5570 6240 3.652478 CGACATACGTTCTTTTTACCGC 58.348 45.455 0.00 0.00 37.22 5.68
5571 6241 3.652478 GACATACGTTCTTTTTACCGCG 58.348 45.455 0.00 0.00 0.00 6.46
5572 6242 3.059166 ACATACGTTCTTTTTACCGCGT 58.941 40.909 4.92 0.00 36.52 6.01
5573 6243 4.233789 ACATACGTTCTTTTTACCGCGTA 58.766 39.130 4.92 0.00 38.78 4.42
5574 6244 4.324402 ACATACGTTCTTTTTACCGCGTAG 59.676 41.667 4.92 0.00 38.04 3.51
5584 6254 2.813908 CCGCGTAGGTGGTCAAGC 60.814 66.667 4.92 0.00 39.07 4.01
5585 6255 2.048597 CGCGTAGGTGGTCAAGCA 60.049 61.111 0.00 0.00 0.00 3.91
5586 6256 2.380410 CGCGTAGGTGGTCAAGCAC 61.380 63.158 0.00 3.77 0.00 4.40
5587 6257 2.380410 GCGTAGGTGGTCAAGCACG 61.380 63.158 6.28 0.00 35.40 5.34
5588 6258 1.006571 CGTAGGTGGTCAAGCACGT 60.007 57.895 11.63 11.63 0.00 4.49
5589 6259 1.007336 CGTAGGTGGTCAAGCACGTC 61.007 60.000 10.42 3.56 0.00 4.34
5590 6260 1.007336 GTAGGTGGTCAAGCACGTCG 61.007 60.000 10.42 0.00 0.00 5.12
5591 6261 2.149803 TAGGTGGTCAAGCACGTCGG 62.150 60.000 10.42 0.00 0.00 4.79
5592 6262 2.279918 GTGGTCAAGCACGTCGGT 60.280 61.111 0.00 0.00 0.00 4.69
5594 6264 3.041940 GGTCAAGCACGTCGGTGG 61.042 66.667 0.00 0.00 44.54 4.61
5600 6270 2.629763 GCACGTCGGTGGTCAAAC 59.370 61.111 0.00 0.00 44.54 2.93
5601 6271 2.888998 GCACGTCGGTGGTCAAACC 61.889 63.158 0.00 0.00 44.54 3.27
5608 6278 4.364409 GTGGTCAAACCGCGCGTC 62.364 66.667 29.95 10.96 42.58 5.19
5630 6300 4.072088 GGTGAAAGCGCGTCGTGG 62.072 66.667 8.43 0.00 0.00 4.94
5631 6301 4.719616 GTGAAAGCGCGTCGTGGC 62.720 66.667 8.43 5.13 0.00 5.01
5641 6311 4.059459 GTCGTGGCGCGTGAACTG 62.059 66.667 20.88 1.28 42.13 3.16
5677 6347 3.812019 CGTCCGTCCCCTCGTCTG 61.812 72.222 0.00 0.00 0.00 3.51
5678 6348 4.131088 GTCCGTCCCCTCGTCTGC 62.131 72.222 0.00 0.00 0.00 4.26
5742 6412 2.128035 GACTGCCGTCGAATTGATAGG 58.872 52.381 0.00 0.00 0.00 2.57
5743 6413 0.861837 CTGCCGTCGAATTGATAGGC 59.138 55.000 11.43 11.43 46.87 3.93
5744 6414 0.531974 TGCCGTCGAATTGATAGGCC 60.532 55.000 14.45 0.00 46.45 5.19
5745 6415 0.531974 GCCGTCGAATTGATAGGCCA 60.532 55.000 5.01 0.00 43.36 5.36
5746 6416 1.948104 CCGTCGAATTGATAGGCCAA 58.052 50.000 5.01 0.00 0.00 4.52
5747 6417 1.597663 CCGTCGAATTGATAGGCCAAC 59.402 52.381 5.01 0.00 0.00 3.77
5748 6418 1.257936 CGTCGAATTGATAGGCCAACG 59.742 52.381 5.01 0.00 0.00 4.10
5749 6419 2.546778 GTCGAATTGATAGGCCAACGA 58.453 47.619 5.01 0.96 0.00 3.85
5750 6420 2.284417 GTCGAATTGATAGGCCAACGAC 59.716 50.000 5.01 10.00 37.91 4.34
5751 6421 1.597663 CGAATTGATAGGCCAACGACC 59.402 52.381 5.01 0.00 0.00 4.79
5752 6422 1.947456 GAATTGATAGGCCAACGACCC 59.053 52.381 5.01 0.00 0.00 4.46
5753 6423 0.179056 ATTGATAGGCCAACGACCCG 60.179 55.000 5.01 0.00 0.00 5.28
5754 6424 1.546589 TTGATAGGCCAACGACCCGT 61.547 55.000 5.01 0.00 43.97 5.28
5755 6425 1.227176 GATAGGCCAACGACCCGTC 60.227 63.158 5.01 0.00 39.99 4.79
5756 6426 2.639883 GATAGGCCAACGACCCGTCC 62.640 65.000 5.01 0.00 39.99 4.79
5782 6452 2.116772 CCCCGCCGTCTCCCTATA 59.883 66.667 0.00 0.00 0.00 1.31
5783 6453 1.532316 CCCCGCCGTCTCCCTATAA 60.532 63.158 0.00 0.00 0.00 0.98
5784 6454 1.117142 CCCCGCCGTCTCCCTATAAA 61.117 60.000 0.00 0.00 0.00 1.40
5785 6455 0.974383 CCCGCCGTCTCCCTATAAAT 59.026 55.000 0.00 0.00 0.00 1.40
5786 6456 1.067071 CCCGCCGTCTCCCTATAAATC 60.067 57.143 0.00 0.00 0.00 2.17
5787 6457 1.893801 CCGCCGTCTCCCTATAAATCT 59.106 52.381 0.00 0.00 0.00 2.40
5788 6458 2.094649 CCGCCGTCTCCCTATAAATCTC 60.095 54.545 0.00 0.00 0.00 2.75
5789 6459 2.557056 CGCCGTCTCCCTATAAATCTCA 59.443 50.000 0.00 0.00 0.00 3.27
5790 6460 3.612004 CGCCGTCTCCCTATAAATCTCAC 60.612 52.174 0.00 0.00 0.00 3.51
5791 6461 3.306156 GCCGTCTCCCTATAAATCTCACC 60.306 52.174 0.00 0.00 0.00 4.02
5792 6462 3.258622 CCGTCTCCCTATAAATCTCACCC 59.741 52.174 0.00 0.00 0.00 4.61
5793 6463 3.258622 CGTCTCCCTATAAATCTCACCCC 59.741 52.174 0.00 0.00 0.00 4.95
5794 6464 3.583526 GTCTCCCTATAAATCTCACCCCC 59.416 52.174 0.00 0.00 0.00 5.40
5795 6465 2.567615 CTCCCTATAAATCTCACCCCCG 59.432 54.545 0.00 0.00 0.00 5.73
5796 6466 2.090380 TCCCTATAAATCTCACCCCCGT 60.090 50.000 0.00 0.00 0.00 5.28
5797 6467 2.302157 CCCTATAAATCTCACCCCCGTC 59.698 54.545 0.00 0.00 0.00 4.79
5798 6468 2.302157 CCTATAAATCTCACCCCCGTCC 59.698 54.545 0.00 0.00 0.00 4.79
5799 6469 0.756903 ATAAATCTCACCCCCGTCCG 59.243 55.000 0.00 0.00 0.00 4.79
5800 6470 1.963464 TAAATCTCACCCCCGTCCGC 61.963 60.000 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 85 8.744652 TGAATAGTTAATACCACAACAAATGGG 58.255 33.333 0.00 0.00 41.97 4.00
219 223 5.534207 TCAGGAACTTTGCAAATTCATGT 57.466 34.783 27.86 16.78 34.60 3.21
390 401 4.630894 TCACATCCCGCAAATTTGATAC 57.369 40.909 22.31 3.37 0.00 2.24
420 431 6.804677 TCTGATGAAACTCTTAGAGCAGATC 58.195 40.000 9.44 6.66 32.04 2.75
452 472 7.786178 ATATAAGTGCTTCGACTTTTGCATA 57.214 32.000 0.00 0.00 37.38 3.14
453 473 6.683974 ATATAAGTGCTTCGACTTTTGCAT 57.316 33.333 0.00 0.00 37.38 3.96
507 528 4.096382 GCAATTTCGGTTACATCACATCCT 59.904 41.667 0.00 0.00 0.00 3.24
513 534 5.009110 TGAGTTTGCAATTTCGGTTACATCA 59.991 36.000 0.00 0.00 0.00 3.07
562 583 6.586082 GCCATTGCGAAATAATTGTATAAGGG 59.414 38.462 0.00 0.00 0.00 3.95
568 589 5.574830 GTGTTGCCATTGCGAAATAATTGTA 59.425 36.000 0.00 0.00 41.78 2.41
592 613 3.510388 TCCTAGTCATCGAGCTTGTTG 57.490 47.619 5.75 5.75 0.00 3.33
833 892 2.510691 GATTTTCGCCGGCGGAGA 60.511 61.111 44.95 35.40 40.25 3.71
1018 1081 1.080705 GCGCCGCGGAGTATATTCT 60.081 57.895 33.48 0.00 0.00 2.40
1079 1142 4.479993 AGTCCCTGCTGCCATCGC 62.480 66.667 0.00 0.00 0.00 4.58
1269 1338 1.227764 CGACAGGGAGATGGGCATG 60.228 63.158 0.00 0.00 0.00 4.06
1386 1455 2.279252 CGAAGTATGTCGCCCCGG 60.279 66.667 0.00 0.00 33.66 5.73
1502 1571 1.134670 GCAGAATGGCTAAGAGACCGT 60.135 52.381 0.00 0.00 35.86 4.83
1556 1632 4.261614 CGAATGATGAATGTAGGGTCGAGA 60.262 45.833 0.00 0.00 0.00 4.04
1563 1639 3.873361 AGCACACGAATGATGAATGTAGG 59.127 43.478 0.00 0.00 0.00 3.18
1579 1655 2.622942 TGGGAAGTTCAATTCAGCACAC 59.377 45.455 5.01 0.00 0.00 3.82
1674 1757 5.700832 TGACACACTGACATTCCAAATCTAC 59.299 40.000 0.00 0.00 0.00 2.59
1691 1774 6.064846 AGAATCAACTTCAATGTGACACAC 57.935 37.500 11.22 1.42 36.24 3.82
1776 1863 7.397476 ACACTCTAACAAGAAGAGGACATCATA 59.603 37.037 5.21 0.00 43.98 2.15
1780 1867 5.305644 ACACACTCTAACAAGAAGAGGACAT 59.694 40.000 5.21 0.00 43.98 3.06
1809 1896 3.884693 TGTCAGACATGCATGAACAAACT 59.115 39.130 32.75 16.69 0.00 2.66
1812 1899 3.742385 TCTGTCAGACATGCATGAACAA 58.258 40.909 32.75 12.45 0.00 2.83
1814 1901 3.487042 GCATCTGTCAGACATGCATGAAC 60.487 47.826 32.75 23.27 35.00 3.18
1887 1974 5.611374 AGGGACATCTATTACCAAATGACG 58.389 41.667 0.00 0.00 0.00 4.35
1987 2081 9.883142 TGTTTTAAAGTTGATTTTCCTTGTCAT 57.117 25.926 0.00 0.00 32.01 3.06
2147 2246 8.375506 ACTGTATTACTGGAATTTCTTGACTCA 58.624 33.333 5.80 0.00 0.00 3.41
2153 2252 7.335422 CAGAGCACTGTATTACTGGAATTTCTT 59.665 37.037 2.59 0.00 39.11 2.52
2191 2290 6.094464 CACTACAATTCAATGCCAGATTGAGA 59.906 38.462 0.00 0.00 38.98 3.27
2233 2333 2.738743 ACAACAGCAATAATCAGGGGG 58.261 47.619 0.00 0.00 0.00 5.40
2235 2335 4.497300 CCAAACAACAGCAATAATCAGGG 58.503 43.478 0.00 0.00 0.00 4.45
2265 2365 5.352284 ACTCTACAAAGTGAACAGTGACTG 58.648 41.667 11.70 11.70 37.52 3.51
2291 2391 9.251440 TCAGTAAATTTGAAGTAGTAGGAGCTA 57.749 33.333 0.00 0.00 0.00 3.32
2292 2392 8.135382 TCAGTAAATTTGAAGTAGTAGGAGCT 57.865 34.615 0.00 0.00 0.00 4.09
2293 2393 8.773404 TTCAGTAAATTTGAAGTAGTAGGAGC 57.227 34.615 0.00 0.00 31.35 4.70
2479 2594 3.636231 CTCACCCCCACTTGGCGA 61.636 66.667 0.00 0.00 0.00 5.54
2525 2640 6.595772 CTTGTAAAGCAGCTACTTATCCTG 57.404 41.667 0.00 0.00 36.98 3.86
2601 2716 8.934023 AGGGTCACACTAATCTGAAATAAAAA 57.066 30.769 0.00 0.00 0.00 1.94
2651 2766 7.999679 TGATTTCATGGATAATGACAACCTTC 58.000 34.615 0.00 0.00 45.17 3.46
2740 2857 4.759693 CCGTTAGGAATATAGCATGCCAAA 59.240 41.667 15.66 0.00 41.02 3.28
2741 2858 4.041075 TCCGTTAGGAATATAGCATGCCAA 59.959 41.667 15.66 2.91 45.12 4.52
2761 2878 3.354089 ACTGAACAAACAAATGCTCCG 57.646 42.857 0.00 0.00 0.00 4.63
2948 3071 7.070322 ACACTACTAAGTTTTGTAGGTCCTTCA 59.930 37.037 14.74 0.00 39.65 3.02
3136 3259 2.280186 GATCACCGGGATGGACGC 60.280 66.667 6.32 0.00 42.00 5.19
3225 3348 6.183360 CCCGTTTTAACATTTCGGCAAAATAG 60.183 38.462 0.00 0.00 39.87 1.73
3247 3370 4.430908 CTTTTAAGCACTACTAGGTCCCG 58.569 47.826 0.00 0.00 0.00 5.14
3287 3564 6.221659 TCTGCATGAATGAGCTACTAGAATG 58.778 40.000 0.00 0.00 0.00 2.67
3416 3697 1.134907 CAGGGGAACGTGCGTAGTATT 60.135 52.381 0.00 0.00 39.65 1.89
3427 3708 2.213499 GCTGTAATGATCAGGGGAACG 58.787 52.381 0.09 0.00 33.98 3.95
3814 4095 7.862873 TCAAGAGAGTTGTTGCATATATACTCG 59.137 37.037 5.74 0.00 37.62 4.18
3890 4171 4.458989 GGTTATGCTTGTCACCATCTTCAA 59.541 41.667 0.00 0.00 0.00 2.69
3906 4187 5.402398 CAAAGAGCAAAGGTAAGGTTATGC 58.598 41.667 0.00 0.00 0.00 3.14
3929 4210 5.574443 GTCTATTTCATCAAGTGGCAAAAGC 59.426 40.000 0.00 0.00 0.00 3.51
3962 4243 1.374947 GTGCCACTCCAGTAAGCCA 59.625 57.895 0.00 0.00 0.00 4.75
4025 4306 1.073964 CACGACACTCTTCATGCAGG 58.926 55.000 0.00 0.00 0.00 4.85
4043 4324 1.757682 GGTGAATTATTGGACCGGCA 58.242 50.000 0.00 0.00 0.00 5.69
4089 4370 5.122869 CCATAGGAACAAAGTCATGTGTCAG 59.877 44.000 0.00 0.00 32.81 3.51
4209 4490 1.401905 GCCTTCCATTTAGCAAGACCG 59.598 52.381 0.00 0.00 0.00 4.79
4239 4520 5.073691 CCCCAGAACCCTTGTATGAATAGAT 59.926 44.000 0.00 0.00 0.00 1.98
4274 4555 7.907214 TTGGAAGAACTAGAGTTTTATGCTC 57.093 36.000 0.00 0.00 38.56 4.26
4288 4569 9.574516 AACAGAGTTTACAATATTGGAAGAACT 57.425 29.630 19.37 16.92 31.55 3.01
4289 4570 9.827411 GAACAGAGTTTACAATATTGGAAGAAC 57.173 33.333 19.37 12.74 31.55 3.01
4290 4571 9.010029 GGAACAGAGTTTACAATATTGGAAGAA 57.990 33.333 19.37 0.54 31.55 2.52
4291 4572 8.160765 TGGAACAGAGTTTACAATATTGGAAGA 58.839 33.333 19.37 5.91 31.55 2.87
4292 4573 8.335532 TGGAACAGAGTTTACAATATTGGAAG 57.664 34.615 19.37 7.60 31.55 3.46
4503 4786 1.229428 GCAGTATGTGTGTGCACTGT 58.771 50.000 19.41 2.03 45.44 3.55
4552 4835 6.170506 CAAGTATACTGTAAGCAAGTTGGGA 58.829 40.000 6.06 0.00 37.60 4.37
4579 4871 4.271049 ACAGAGATACGCGAAAATGAATGG 59.729 41.667 15.93 0.00 0.00 3.16
4714 5006 4.246458 GGTTTGTCCTGACACAGAGATAC 58.754 47.826 0.00 0.00 41.67 2.24
4753 5045 1.848886 GACGGACAACCTCCCCCATT 61.849 60.000 0.00 0.00 35.21 3.16
4852 5146 0.107456 CGGGAGGGCTCTACGTAGTA 59.893 60.000 21.53 8.29 45.11 1.82
4867 5210 1.203063 CCTCAGGTATCTCATCCGGGA 60.203 57.143 0.00 0.00 0.00 5.14
4873 5216 2.703007 GAGCCAACCTCAGGTATCTCAT 59.297 50.000 0.00 0.00 40.45 2.90
4886 5229 1.817209 CTCCCGTCTAGAGCCAACC 59.183 63.158 0.00 0.00 0.00 3.77
4900 5243 4.097361 GACCTGGGTTCGGCTCCC 62.097 72.222 0.00 4.04 44.81 4.30
4901 5244 3.316573 CTGACCTGGGTTCGGCTCC 62.317 68.421 0.00 0.00 0.00 4.70
4902 5245 2.266055 CTGACCTGGGTTCGGCTC 59.734 66.667 0.00 0.00 0.00 4.70
4903 5246 4.021925 GCTGACCTGGGTTCGGCT 62.022 66.667 10.10 0.00 0.00 5.52
4904 5247 3.842925 TTGCTGACCTGGGTTCGGC 62.843 63.158 10.38 10.38 0.00 5.54
4905 5248 1.672356 CTTGCTGACCTGGGTTCGG 60.672 63.158 0.00 0.00 0.00 4.30
4930 5273 0.389948 GACTGGTAAGGTCGCAGTGG 60.390 60.000 0.00 0.00 0.00 4.00
4947 5290 7.184106 TGTTTCTTCACTTCGTAAAATGTGAC 58.816 34.615 0.00 0.00 38.87 3.67
4977 5320 8.511604 TGAAATCAGTATTCAGGAATTTCCTC 57.488 34.615 15.24 4.12 45.66 3.71
4985 5328 5.052481 CAGCGATGAAATCAGTATTCAGGA 58.948 41.667 0.00 0.00 45.97 3.86
5025 5368 3.117093 AGAACCGGAGATATCCCTCTTCA 60.117 47.826 9.46 0.00 33.79 3.02
5027 5370 3.117093 TGAGAACCGGAGATATCCCTCTT 60.117 47.826 9.46 0.00 33.79 2.85
5042 5385 1.076332 CGATTTCACCGGTGAGAACC 58.924 55.000 34.25 23.92 41.13 3.62
5063 5406 1.126846 GCAGACAGTAACATGCGTGTC 59.873 52.381 12.96 0.25 37.67 3.67
5067 5410 1.002366 GGAGCAGACAGTAACATGCG 58.998 55.000 0.00 0.00 43.41 4.73
5068 5411 1.373570 GGGAGCAGACAGTAACATGC 58.626 55.000 0.00 0.00 38.97 4.06
5069 5412 1.556911 AGGGGAGCAGACAGTAACATG 59.443 52.381 0.00 0.00 0.00 3.21
5187 5851 6.307077 GGTAGAACGGCATTTCATTTACAAAC 59.693 38.462 0.00 0.00 0.00 2.93
5226 5892 0.534203 GCCAGGGAACACGAACTCAA 60.534 55.000 0.00 0.00 0.00 3.02
5233 5899 2.876368 GATGAGGGCCAGGGAACACG 62.876 65.000 6.18 0.00 0.00 4.49
5234 5900 1.077429 GATGAGGGCCAGGGAACAC 60.077 63.158 6.18 0.00 0.00 3.32
5259 5925 1.946768 TGCACAACAAGAACACTAGCC 59.053 47.619 0.00 0.00 0.00 3.93
5260 5926 3.904136 ATGCACAACAAGAACACTAGC 57.096 42.857 0.00 0.00 0.00 3.42
5261 5927 5.581605 ACAAATGCACAACAAGAACACTAG 58.418 37.500 0.00 0.00 0.00 2.57
5262 5928 5.574891 ACAAATGCACAACAAGAACACTA 57.425 34.783 0.00 0.00 0.00 2.74
5263 5929 4.454728 ACAAATGCACAACAAGAACACT 57.545 36.364 0.00 0.00 0.00 3.55
5264 5930 4.884707 CAACAAATGCACAACAAGAACAC 58.115 39.130 0.00 0.00 0.00 3.32
5278 5947 5.179045 AGACTCTTCAACAGCAACAAATG 57.821 39.130 0.00 0.00 0.00 2.32
5279 5948 5.357878 TCAAGACTCTTCAACAGCAACAAAT 59.642 36.000 0.00 0.00 0.00 2.32
5285 5954 4.313282 CAGATCAAGACTCTTCAACAGCA 58.687 43.478 0.00 0.00 0.00 4.41
5353 6023 3.515602 AGAAGTGGGCTGAGAAAACAT 57.484 42.857 0.00 0.00 0.00 2.71
5354 6024 3.117888 AGAAGAAGTGGGCTGAGAAAACA 60.118 43.478 0.00 0.00 0.00 2.83
5356 6026 3.864789 AGAAGAAGTGGGCTGAGAAAA 57.135 42.857 0.00 0.00 0.00 2.29
5367 6037 3.064931 GGGTTGTACCGAAGAAGAAGTG 58.935 50.000 0.00 0.00 39.83 3.16
5368 6038 2.038164 GGGGTTGTACCGAAGAAGAAGT 59.962 50.000 0.00 0.00 39.83 3.01
5369 6039 2.614734 GGGGGTTGTACCGAAGAAGAAG 60.615 54.545 0.00 0.00 39.83 2.85
5370 6040 1.348696 GGGGGTTGTACCGAAGAAGAA 59.651 52.381 0.00 0.00 39.83 2.52
5371 6041 0.978907 GGGGGTTGTACCGAAGAAGA 59.021 55.000 0.00 0.00 39.83 2.87
5372 6042 0.981943 AGGGGGTTGTACCGAAGAAG 59.018 55.000 0.00 0.00 39.83 2.85
5373 6043 0.688487 CAGGGGGTTGTACCGAAGAA 59.312 55.000 0.00 0.00 39.83 2.52
5374 6044 0.178926 TCAGGGGGTTGTACCGAAGA 60.179 55.000 0.00 0.00 39.83 2.87
5375 6045 0.688487 TTCAGGGGGTTGTACCGAAG 59.312 55.000 0.00 0.00 39.83 3.79
5376 6046 1.138568 TTTCAGGGGGTTGTACCGAA 58.861 50.000 0.00 0.00 39.83 4.30
5377 6047 1.138568 TTTTCAGGGGGTTGTACCGA 58.861 50.000 0.00 0.00 39.83 4.69
5378 6048 1.241165 GTTTTCAGGGGGTTGTACCG 58.759 55.000 0.00 0.00 39.83 4.02
5379 6049 2.368311 TGTTTTCAGGGGGTTGTACC 57.632 50.000 0.00 0.00 37.60 3.34
5380 6050 3.492337 TGATGTTTTCAGGGGGTTGTAC 58.508 45.455 0.00 0.00 0.00 2.90
5381 6051 3.885976 TGATGTTTTCAGGGGGTTGTA 57.114 42.857 0.00 0.00 0.00 2.41
5382 6052 2.698274 GTTGATGTTTTCAGGGGGTTGT 59.302 45.455 0.00 0.00 35.27 3.32
5383 6053 2.288152 CGTTGATGTTTTCAGGGGGTTG 60.288 50.000 0.00 0.00 35.27 3.77
5384 6054 1.960689 CGTTGATGTTTTCAGGGGGTT 59.039 47.619 0.00 0.00 35.27 4.11
5385 6055 1.616159 CGTTGATGTTTTCAGGGGGT 58.384 50.000 0.00 0.00 35.27 4.95
5386 6056 0.887933 CCGTTGATGTTTTCAGGGGG 59.112 55.000 0.00 0.00 35.27 5.40
5387 6057 1.539827 GACCGTTGATGTTTTCAGGGG 59.460 52.381 0.00 0.00 35.27 4.79
5388 6058 1.539827 GGACCGTTGATGTTTTCAGGG 59.460 52.381 0.00 0.00 35.27 4.45
5389 6059 2.226330 TGGACCGTTGATGTTTTCAGG 58.774 47.619 0.00 0.00 35.27 3.86
5390 6060 3.138304 TCTGGACCGTTGATGTTTTCAG 58.862 45.455 0.00 0.00 35.27 3.02
5391 6061 3.201353 TCTGGACCGTTGATGTTTTCA 57.799 42.857 0.00 0.00 0.00 2.69
5392 6062 3.181520 CGATCTGGACCGTTGATGTTTTC 60.182 47.826 0.00 0.00 0.00 2.29
5393 6063 2.742053 CGATCTGGACCGTTGATGTTTT 59.258 45.455 0.00 0.00 0.00 2.43
5394 6064 2.289444 ACGATCTGGACCGTTGATGTTT 60.289 45.455 0.00 0.00 35.21 2.83
5395 6065 1.275291 ACGATCTGGACCGTTGATGTT 59.725 47.619 0.00 0.00 35.21 2.71
5396 6066 0.895530 ACGATCTGGACCGTTGATGT 59.104 50.000 0.00 0.00 35.21 3.06
5397 6067 1.560923 GACGATCTGGACCGTTGATG 58.439 55.000 0.00 0.00 39.30 3.07
5398 6068 0.460311 GGACGATCTGGACCGTTGAT 59.540 55.000 0.00 0.00 39.30 2.57
5399 6069 0.611062 AGGACGATCTGGACCGTTGA 60.611 55.000 0.00 0.00 39.30 3.18
5400 6070 1.100510 TAGGACGATCTGGACCGTTG 58.899 55.000 0.00 0.00 39.30 4.10
5401 6071 2.068834 ATAGGACGATCTGGACCGTT 57.931 50.000 0.00 0.00 39.30 4.44
5402 6072 2.502295 GTATAGGACGATCTGGACCGT 58.498 52.381 0.00 0.00 42.17 4.83
5403 6073 1.811359 GGTATAGGACGATCTGGACCG 59.189 57.143 0.00 0.00 0.00 4.79
5404 6074 2.169330 GGGTATAGGACGATCTGGACC 58.831 57.143 0.00 0.00 0.00 4.46
5405 6075 2.169330 GGGGTATAGGACGATCTGGAC 58.831 57.143 0.00 0.00 0.00 4.02
5406 6076 2.071372 AGGGGTATAGGACGATCTGGA 58.929 52.381 0.00 0.00 0.00 3.86
5407 6077 2.606751 AGGGGTATAGGACGATCTGG 57.393 55.000 0.00 0.00 0.00 3.86
5408 6078 2.488545 CGAAGGGGTATAGGACGATCTG 59.511 54.545 0.00 0.00 0.00 2.90
5409 6079 2.792878 CGAAGGGGTATAGGACGATCT 58.207 52.381 0.00 0.00 0.00 2.75
5410 6080 1.201880 GCGAAGGGGTATAGGACGATC 59.798 57.143 0.00 0.00 0.00 3.69
5411 6081 1.254954 GCGAAGGGGTATAGGACGAT 58.745 55.000 0.00 0.00 0.00 3.73
5412 6082 0.825010 GGCGAAGGGGTATAGGACGA 60.825 60.000 0.00 0.00 0.00 4.20
5413 6083 0.826672 AGGCGAAGGGGTATAGGACG 60.827 60.000 0.00 0.00 0.00 4.79
5414 6084 0.680061 CAGGCGAAGGGGTATAGGAC 59.320 60.000 0.00 0.00 0.00 3.85
5415 6085 0.559205 TCAGGCGAAGGGGTATAGGA 59.441 55.000 0.00 0.00 0.00 2.94
5416 6086 1.420430 TTCAGGCGAAGGGGTATAGG 58.580 55.000 0.00 0.00 0.00 2.57
5417 6087 3.118371 AGTTTTCAGGCGAAGGGGTATAG 60.118 47.826 0.00 0.00 31.28 1.31
5418 6088 2.841881 AGTTTTCAGGCGAAGGGGTATA 59.158 45.455 0.00 0.00 31.28 1.47
5419 6089 1.633945 AGTTTTCAGGCGAAGGGGTAT 59.366 47.619 0.00 0.00 31.28 2.73
5420 6090 1.061546 AGTTTTCAGGCGAAGGGGTA 58.938 50.000 0.00 0.00 31.28 3.69
5421 6091 0.185175 AAGTTTTCAGGCGAAGGGGT 59.815 50.000 0.00 0.00 31.28 4.95
5422 6092 2.194201 TAAGTTTTCAGGCGAAGGGG 57.806 50.000 0.00 0.00 31.28 4.79
5423 6093 4.577834 TTTTAAGTTTTCAGGCGAAGGG 57.422 40.909 0.00 0.00 31.28 3.95
5442 6112 3.769300 GCAATGACCATCCTACCCTTTTT 59.231 43.478 0.00 0.00 0.00 1.94
5443 6113 3.365472 GCAATGACCATCCTACCCTTTT 58.635 45.455 0.00 0.00 0.00 2.27
5444 6114 2.358195 GGCAATGACCATCCTACCCTTT 60.358 50.000 0.00 0.00 0.00 3.11
5445 6115 1.215423 GGCAATGACCATCCTACCCTT 59.785 52.381 0.00 0.00 0.00 3.95
5446 6116 0.846693 GGCAATGACCATCCTACCCT 59.153 55.000 0.00 0.00 0.00 4.34
5447 6117 0.178990 GGGCAATGACCATCCTACCC 60.179 60.000 0.00 0.00 0.00 3.69
5448 6118 0.178990 GGGGCAATGACCATCCTACC 60.179 60.000 7.73 0.00 27.52 3.18
5449 6119 0.846693 AGGGGCAATGACCATCCTAC 59.153 55.000 7.73 0.00 27.52 3.18
5450 6120 0.846015 CAGGGGCAATGACCATCCTA 59.154 55.000 7.73 0.00 27.52 2.94
5451 6121 1.616921 CAGGGGCAATGACCATCCT 59.383 57.895 7.73 0.00 27.52 3.24
5452 6122 2.129785 GCAGGGGCAATGACCATCC 61.130 63.158 7.73 0.00 40.72 3.51
5453 6123 2.129785 GGCAGGGGCAATGACCATC 61.130 63.158 7.73 0.00 43.71 3.51
5454 6124 2.042639 GGCAGGGGCAATGACCAT 60.043 61.111 7.73 0.00 43.71 3.55
5455 6125 4.380945 GGGCAGGGGCAATGACCA 62.381 66.667 7.73 0.00 45.98 4.02
5457 6127 4.066139 AGGGGCAGGGGCAATGAC 62.066 66.667 0.00 0.00 43.71 3.06
5458 6128 3.743017 GAGGGGCAGGGGCAATGA 61.743 66.667 0.00 0.00 43.71 2.57
5459 6129 4.847367 GGAGGGGCAGGGGCAATG 62.847 72.222 0.00 0.00 43.71 2.82
5505 6175 3.453491 TACATACGTCGACGGGCGC 62.453 63.158 37.89 0.00 44.95 6.53
5506 6176 1.652329 GTACATACGTCGACGGGCG 60.652 63.158 37.89 26.98 44.95 6.13
5507 6177 1.652329 CGTACATACGTCGACGGGC 60.652 63.158 37.89 20.27 44.13 6.13
5508 6178 4.576843 CGTACATACGTCGACGGG 57.423 61.111 37.89 28.27 44.13 5.28
5537 6207 3.391965 ACGTATGTCGCCACAGTAAAAA 58.608 40.909 0.00 0.00 44.19 1.94
5538 6208 3.029320 ACGTATGTCGCCACAGTAAAA 57.971 42.857 0.00 0.00 44.19 1.52
5539 6209 2.728690 ACGTATGTCGCCACAGTAAA 57.271 45.000 0.00 0.00 44.19 2.01
5540 6210 2.229543 AGAACGTATGTCGCCACAGTAA 59.770 45.455 0.00 0.00 44.19 2.24
5541 6211 1.814394 AGAACGTATGTCGCCACAGTA 59.186 47.619 0.00 0.00 44.19 2.74
5542 6212 0.601558 AGAACGTATGTCGCCACAGT 59.398 50.000 0.00 0.00 44.19 3.55
5543 6213 1.710013 AAGAACGTATGTCGCCACAG 58.290 50.000 0.00 0.00 44.19 3.66
5544 6214 2.157834 AAAGAACGTATGTCGCCACA 57.842 45.000 0.00 0.00 44.19 4.17
5545 6215 3.531262 AAAAAGAACGTATGTCGCCAC 57.469 42.857 0.00 0.00 44.19 5.01
5546 6216 3.432933 GGTAAAAAGAACGTATGTCGCCA 59.567 43.478 0.00 0.00 44.19 5.69
5547 6217 3.482436 CGGTAAAAAGAACGTATGTCGCC 60.482 47.826 0.00 0.00 44.19 5.54
5548 6218 3.652478 CGGTAAAAAGAACGTATGTCGC 58.348 45.455 0.00 0.00 44.19 5.19
5549 6219 3.652478 GCGGTAAAAAGAACGTATGTCG 58.348 45.455 0.00 0.00 46.00 4.35
5550 6220 3.121778 ACGCGGTAAAAAGAACGTATGTC 59.878 43.478 12.47 0.00 31.03 3.06
5551 6221 3.059166 ACGCGGTAAAAAGAACGTATGT 58.941 40.909 12.47 0.00 31.03 2.29
5552 6222 3.710437 ACGCGGTAAAAAGAACGTATG 57.290 42.857 12.47 0.00 31.03 2.39
5553 6223 3.859386 CCTACGCGGTAAAAAGAACGTAT 59.141 43.478 12.47 0.00 35.70 3.06
5554 6224 3.241701 CCTACGCGGTAAAAAGAACGTA 58.758 45.455 12.47 0.00 35.15 3.57
5555 6225 2.061028 CCTACGCGGTAAAAAGAACGT 58.939 47.619 12.47 0.00 37.53 3.99
5556 6226 2.061028 ACCTACGCGGTAAAAAGAACG 58.939 47.619 12.47 0.00 46.73 3.95
5557 6227 2.158254 CCACCTACGCGGTAAAAAGAAC 59.842 50.000 12.47 0.00 46.94 3.01
5558 6228 2.224257 ACCACCTACGCGGTAAAAAGAA 60.224 45.455 12.47 0.00 46.94 2.52
5559 6229 1.344114 ACCACCTACGCGGTAAAAAGA 59.656 47.619 12.47 0.00 46.94 2.52
5560 6230 1.728425 GACCACCTACGCGGTAAAAAG 59.272 52.381 12.47 0.00 46.94 2.27
5561 6231 1.069823 TGACCACCTACGCGGTAAAAA 59.930 47.619 12.47 0.00 46.94 1.94
5562 6232 0.678395 TGACCACCTACGCGGTAAAA 59.322 50.000 12.47 0.00 46.94 1.52
5563 6233 0.678395 TTGACCACCTACGCGGTAAA 59.322 50.000 12.47 0.00 46.94 2.01
5564 6234 0.244450 CTTGACCACCTACGCGGTAA 59.756 55.000 12.47 0.00 46.94 2.85
5565 6235 1.885157 CTTGACCACCTACGCGGTA 59.115 57.895 12.47 0.00 46.94 4.02
5567 6237 2.813908 GCTTGACCACCTACGCGG 60.814 66.667 12.47 0.00 39.35 6.46
5568 6238 2.048597 TGCTTGACCACCTACGCG 60.049 61.111 3.53 3.53 0.00 6.01
5569 6239 2.380410 CGTGCTTGACCACCTACGC 61.380 63.158 0.00 0.00 32.10 4.42
5570 6240 1.006571 ACGTGCTTGACCACCTACG 60.007 57.895 0.00 0.00 37.54 3.51
5571 6241 1.007336 CGACGTGCTTGACCACCTAC 61.007 60.000 0.00 0.00 32.10 3.18
5572 6242 1.287815 CGACGTGCTTGACCACCTA 59.712 57.895 0.00 0.00 32.10 3.08
5573 6243 2.029073 CGACGTGCTTGACCACCT 59.971 61.111 0.00 0.00 32.10 4.00
5574 6244 3.041940 CCGACGTGCTTGACCACC 61.042 66.667 0.00 0.00 32.10 4.61
5575 6245 2.279918 ACCGACGTGCTTGACCAC 60.280 61.111 0.00 0.00 0.00 4.16
5576 6246 2.279851 CACCGACGTGCTTGACCA 60.280 61.111 0.00 0.00 32.04 4.02
5577 6247 3.041940 CCACCGACGTGCTTGACC 61.042 66.667 0.00 0.00 38.79 4.02
5578 6248 2.279918 ACCACCGACGTGCTTGAC 60.280 61.111 0.00 0.00 38.79 3.18
5579 6249 2.028484 GACCACCGACGTGCTTGA 59.972 61.111 0.00 0.00 38.79 3.02
5580 6250 1.433053 TTTGACCACCGACGTGCTTG 61.433 55.000 0.00 0.00 38.79 4.01
5581 6251 1.153329 TTTGACCACCGACGTGCTT 60.153 52.632 0.00 0.00 38.79 3.91
5582 6252 1.885850 GTTTGACCACCGACGTGCT 60.886 57.895 0.00 0.00 38.79 4.40
5583 6253 2.629763 GTTTGACCACCGACGTGC 59.370 61.111 0.00 0.00 38.79 5.34
5584 6254 3.326109 GGTTTGACCACCGACGTG 58.674 61.111 0.00 0.00 38.42 4.49
5591 6261 4.364409 GACGCGCGGTTTGACCAC 62.364 66.667 35.22 9.31 38.47 4.16
5612 6282 4.409588 CACGACGCGCTTTCACCG 62.410 66.667 5.73 0.00 0.00 4.94
5613 6283 4.072088 CCACGACGCGCTTTCACC 62.072 66.667 5.73 0.00 0.00 4.02
5614 6284 4.719616 GCCACGACGCGCTTTCAC 62.720 66.667 5.73 0.00 0.00 3.18
5660 6330 3.812019 CAGACGAGGGGACGGACG 61.812 72.222 0.00 0.00 37.61 4.79
5661 6331 4.131088 GCAGACGAGGGGACGGAC 62.131 72.222 0.00 0.00 37.61 4.79
5722 6392 2.128035 CCTATCAATTCGACGGCAGTC 58.872 52.381 6.95 6.95 43.72 3.51
5723 6393 1.806623 GCCTATCAATTCGACGGCAGT 60.807 52.381 0.00 0.00 41.21 4.40
5724 6394 0.861837 GCCTATCAATTCGACGGCAG 59.138 55.000 0.00 0.00 41.21 4.85
5725 6395 0.531974 GGCCTATCAATTCGACGGCA 60.532 55.000 0.00 0.00 42.60 5.69
5726 6396 0.531974 TGGCCTATCAATTCGACGGC 60.532 55.000 3.32 0.00 40.96 5.68
5727 6397 1.597663 GTTGGCCTATCAATTCGACGG 59.402 52.381 3.32 0.00 0.00 4.79
5728 6398 1.257936 CGTTGGCCTATCAATTCGACG 59.742 52.381 3.32 0.00 0.00 5.12
5729 6399 2.284417 GTCGTTGGCCTATCAATTCGAC 59.716 50.000 3.32 7.16 38.22 4.20
5730 6400 2.546778 GTCGTTGGCCTATCAATTCGA 58.453 47.619 3.32 0.00 0.00 3.71
5731 6401 1.597663 GGTCGTTGGCCTATCAATTCG 59.402 52.381 3.32 0.00 0.00 3.34
5732 6402 1.947456 GGGTCGTTGGCCTATCAATTC 59.053 52.381 3.32 0.00 0.00 2.17
5733 6403 1.745827 CGGGTCGTTGGCCTATCAATT 60.746 52.381 3.32 0.00 0.00 2.32
5734 6404 0.179056 CGGGTCGTTGGCCTATCAAT 60.179 55.000 3.32 0.00 0.00 2.57
5735 6405 1.219664 CGGGTCGTTGGCCTATCAA 59.780 57.895 3.32 0.00 0.00 2.57
5736 6406 1.952102 GACGGGTCGTTGGCCTATCA 61.952 60.000 3.32 0.00 41.37 2.15
5737 6407 1.227176 GACGGGTCGTTGGCCTATC 60.227 63.158 3.32 0.00 41.37 2.08
5738 6408 2.728435 GGACGGGTCGTTGGCCTAT 61.728 63.158 3.32 0.00 41.37 2.57
5739 6409 3.384532 GGACGGGTCGTTGGCCTA 61.385 66.667 3.32 0.00 41.37 3.93
5765 6435 1.117142 TTTATAGGGAGACGGCGGGG 61.117 60.000 13.24 0.00 0.00 5.73
5766 6436 0.974383 ATTTATAGGGAGACGGCGGG 59.026 55.000 13.24 0.00 0.00 6.13
5767 6437 1.893801 AGATTTATAGGGAGACGGCGG 59.106 52.381 13.24 0.00 0.00 6.13
5768 6438 2.557056 TGAGATTTATAGGGAGACGGCG 59.443 50.000 4.80 4.80 0.00 6.46
5769 6439 3.306156 GGTGAGATTTATAGGGAGACGGC 60.306 52.174 0.00 0.00 0.00 5.68
5770 6440 3.258622 GGGTGAGATTTATAGGGAGACGG 59.741 52.174 0.00 0.00 0.00 4.79
5771 6441 3.258622 GGGGTGAGATTTATAGGGAGACG 59.741 52.174 0.00 0.00 0.00 4.18
5772 6442 3.583526 GGGGGTGAGATTTATAGGGAGAC 59.416 52.174 0.00 0.00 0.00 3.36
5773 6443 3.757461 CGGGGGTGAGATTTATAGGGAGA 60.757 52.174 0.00 0.00 0.00 3.71
5774 6444 2.567615 CGGGGGTGAGATTTATAGGGAG 59.432 54.545 0.00 0.00 0.00 4.30
5775 6445 2.090380 ACGGGGGTGAGATTTATAGGGA 60.090 50.000 0.00 0.00 0.00 4.20
5776 6446 2.302157 GACGGGGGTGAGATTTATAGGG 59.698 54.545 0.00 0.00 0.00 3.53
5777 6447 2.302157 GGACGGGGGTGAGATTTATAGG 59.698 54.545 0.00 0.00 0.00 2.57
5778 6448 2.029290 CGGACGGGGGTGAGATTTATAG 60.029 54.545 0.00 0.00 0.00 1.31
5779 6449 1.965643 CGGACGGGGGTGAGATTTATA 59.034 52.381 0.00 0.00 0.00 0.98
5780 6450 0.756903 CGGACGGGGGTGAGATTTAT 59.243 55.000 0.00 0.00 0.00 1.40
5781 6451 1.963464 GCGGACGGGGGTGAGATTTA 61.963 60.000 0.00 0.00 0.00 1.40
5782 6452 2.987125 CGGACGGGGGTGAGATTT 59.013 61.111 0.00 0.00 0.00 2.17
5783 6453 3.782443 GCGGACGGGGGTGAGATT 61.782 66.667 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.