Multiple sequence alignment - TraesCS3B01G439800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G439800 chr3B 100.000 6067 0 0 1 6067 679196614 679202680 0.000000e+00 11204
1 TraesCS3B01G439800 chr3D 93.785 4425 206 38 16 4405 515958680 515963070 0.000000e+00 6584
2 TraesCS3B01G439800 chr3D 89.408 642 33 9 4773 5407 515963399 515964012 0.000000e+00 776
3 TraesCS3B01G439800 chr3D 88.362 232 21 6 5783 6013 515964148 515964374 2.150000e-69 274
4 TraesCS3B01G439800 chr3A 94.755 2822 90 30 36 2825 650421976 650424771 0.000000e+00 4338
5 TraesCS3B01G439800 chr3A 93.595 1811 80 21 2831 4613 650424844 650426646 0.000000e+00 2669
6 TraesCS3B01G439800 chr3A 93.357 572 31 5 4805 5376 650426982 650427546 0.000000e+00 839
7 TraesCS3B01G439800 chr3A 90.236 297 13 8 5783 6067 650427980 650428272 2.060000e-99 374


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G439800 chr3B 679196614 679202680 6066 False 11204.000000 11204 100.000000 1 6067 1 chr3B.!!$F1 6066
1 TraesCS3B01G439800 chr3D 515958680 515964374 5694 False 2544.666667 6584 90.518333 16 6013 3 chr3D.!!$F1 5997
2 TraesCS3B01G439800 chr3A 650421976 650428272 6296 False 2055.000000 4338 92.985750 36 6067 4 chr3A.!!$F1 6031

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
500 507 0.250553 TTGGCCAGTGGTTTAGGTCG 60.251 55.000 11.74 0.00 0.00 4.79 F
644 660 0.592247 CCTTCATTAATGCACGCGCC 60.592 55.000 5.73 0.00 37.32 6.53 F
819 840 1.153349 ATCCGGCGCTTCCTTCTTC 60.153 57.895 7.64 0.00 0.00 2.87 F
965 987 1.374560 TATAAACAAGCCGCGTGCAT 58.625 45.000 19.30 6.88 44.83 3.96 F
2378 2426 1.004745 GCCATCACTCCCTTGAAGGAA 59.995 52.381 13.97 0.00 36.62 3.36 F
2507 2560 0.602905 AAACTACCGTGTGCAGGCTC 60.603 55.000 0.00 0.00 0.00 4.70 F
3625 3754 0.096976 CACCGCTATGCAAGGAAACG 59.903 55.000 7.70 0.00 0.00 3.60 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1515 1538 1.066908 GTGCTCTTCTCCTCCTCATCG 59.933 57.143 0.00 0.0 0.00 3.84 R
2107 2154 2.432444 TGCTGTACCATACCTGCAAAC 58.568 47.619 0.00 0.0 35.38 2.93 R
2378 2426 2.559668 CAGTCCTGGAACATGTGCAATT 59.440 45.455 6.08 0.0 38.20 2.32 R
2507 2560 3.795688 ACCCCATGCAATATCAGGTAG 57.204 47.619 0.00 0.0 0.00 3.18 R
3388 3517 0.388659 GCAGTTGGTTTGTGGCATGA 59.611 50.000 0.00 0.0 0.00 3.07 R
4225 4355 1.321474 CAATTGGCAGTGTGTCAGGT 58.679 50.000 0.00 0.0 31.48 4.00 R
5443 5813 0.034059 CTGAGTTCAGGGCAACGACT 59.966 55.000 1.09 0.0 40.20 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.775686 AGCGTGAGTACATAAAAGTACACA 58.224 37.500 6.97 4.07 45.25 3.72
30 31 7.253883 GCGTGAGTACATAAAAGTACACATACC 60.254 40.741 7.44 0.00 43.75 2.73
213 214 0.815095 TCACACACACGACACACTCT 59.185 50.000 0.00 0.00 0.00 3.24
497 504 1.094785 CGATTGGCCAGTGGTTTAGG 58.905 55.000 5.02 0.00 0.00 2.69
500 507 0.250553 TTGGCCAGTGGTTTAGGTCG 60.251 55.000 11.74 0.00 0.00 4.79
502 509 1.003718 GCCAGTGGTTTAGGTCGCT 60.004 57.895 11.74 0.00 0.00 4.93
517 524 2.278401 GCTGCTTTGCTATGGCGC 60.278 61.111 0.00 0.00 42.25 6.53
524 531 2.674563 TTTGCTATGGCGCCCGCTAT 62.675 55.000 26.77 13.56 44.40 2.97
527 534 1.301716 CTATGGCGCCCGCTATTGT 60.302 57.895 26.77 1.95 42.29 2.71
528 535 1.291877 CTATGGCGCCCGCTATTGTC 61.292 60.000 26.77 0.00 42.29 3.18
534 541 1.488527 CGCCCGCTATTGTCTTAGAC 58.511 55.000 5.27 5.27 0.00 2.59
563 577 2.341101 CGTGTACCCTGCTCGGAGT 61.341 63.158 6.90 0.00 33.16 3.85
597 611 0.593128 GATCCGATTGCGATTTGGGG 59.407 55.000 6.38 0.00 40.82 4.96
598 612 0.823356 ATCCGATTGCGATTTGGGGG 60.823 55.000 6.38 0.00 40.82 5.40
644 660 0.592247 CCTTCATTAATGCACGCGCC 60.592 55.000 5.73 0.00 37.32 6.53
653 674 1.635663 ATGCACGCGCCTTGTAGTTC 61.636 55.000 5.73 0.00 37.32 3.01
680 701 1.539065 CGTGCTTGCCGATAGAAGGAT 60.539 52.381 0.00 0.00 39.76 3.24
681 702 2.288213 CGTGCTTGCCGATAGAAGGATA 60.288 50.000 0.00 0.00 39.76 2.59
682 703 3.321497 GTGCTTGCCGATAGAAGGATAG 58.679 50.000 0.00 0.00 39.76 2.08
683 704 2.965831 TGCTTGCCGATAGAAGGATAGT 59.034 45.455 0.00 0.00 39.76 2.12
819 840 1.153349 ATCCGGCGCTTCCTTCTTC 60.153 57.895 7.64 0.00 0.00 2.87
841 862 1.886542 GATCTGGTGGTTTGGTTGGTC 59.113 52.381 0.00 0.00 0.00 4.02
903 925 6.234920 TGTAGTTTAATTTGCTCTAGGTGCA 58.765 36.000 7.14 7.14 38.80 4.57
965 987 1.374560 TATAAACAAGCCGCGTGCAT 58.625 45.000 19.30 6.88 44.83 3.96
992 1015 2.233922 GTGGTCCTGTACATGTGCTAGT 59.766 50.000 15.25 0.00 0.00 2.57
1125 1148 2.190313 GGCGCCTGGATGATGACA 59.810 61.111 22.15 0.00 0.00 3.58
1422 1445 4.382577 GCTGAAGAAAAGGAACCACCAAAA 60.383 41.667 0.00 0.00 42.04 2.44
1446 1469 4.034410 AGAAGGAGGACAGTAAGGATTCC 58.966 47.826 0.00 0.00 0.00 3.01
1449 1472 4.439860 AGGAGGACAGTAAGGATTCCTTT 58.560 43.478 22.63 5.16 41.69 3.11
1515 1538 1.452833 GGAGACTGGGCAATCTGGC 60.453 63.158 0.00 0.00 42.88 4.85
1713 1760 2.560542 TGGAGCTCAGTCTGAACTTCTC 59.439 50.000 17.19 11.04 31.71 2.87
2065 2112 6.260050 TGTTTCCACAACACTGAGTAATCTTC 59.740 38.462 0.00 0.00 0.00 2.87
2107 2154 9.241317 CCTTTTGCTTATTAGAAATGCACTATG 57.759 33.333 0.00 0.00 33.13 2.23
2189 2236 4.887655 CAGAACTGGGTTAAAGTTTCTGGT 59.112 41.667 0.00 0.00 37.98 4.00
2378 2426 1.004745 GCCATCACTCCCTTGAAGGAA 59.995 52.381 13.97 0.00 36.62 3.36
2403 2451 1.072173 CACATGTTCCAGGACTGTGGA 59.928 52.381 14.49 0.00 45.37 4.02
2436 2484 5.596836 TGCATGTTCTTTCTTTGAAACCT 57.403 34.783 0.00 0.00 0.00 3.50
2437 2485 5.350633 TGCATGTTCTTTCTTTGAAACCTG 58.649 37.500 0.00 0.00 0.00 4.00
2507 2560 0.602905 AAACTACCGTGTGCAGGCTC 60.603 55.000 0.00 0.00 0.00 4.70
2593 2646 3.857010 GCTTTGGTGGCTACATGTTTGAC 60.857 47.826 2.30 0.00 0.00 3.18
2806 2859 7.337942 TCTTGTTGGTGGCATGTTTTAATTTTT 59.662 29.630 0.00 0.00 0.00 1.94
2828 2881 9.787435 TTTTTGATTTCTCCTGCTAACTAGTAA 57.213 29.630 0.00 0.00 0.00 2.24
3065 3185 4.674885 CGTTGCTGCAATATCAATGAACCA 60.675 41.667 19.11 0.00 0.00 3.67
3067 3187 4.939271 TGCTGCAATATCAATGAACCATG 58.061 39.130 0.00 0.00 0.00 3.66
3213 3334 5.118990 CACCACAACCCACATATAGAGAAG 58.881 45.833 0.00 0.00 0.00 2.85
3241 3362 5.065988 ACGTTGCTTGTAACAGAAGTTCAAT 59.934 36.000 5.50 0.00 39.15 2.57
3414 3543 3.333804 CCACAAACCAACTGCAAAGTTT 58.666 40.909 0.00 0.00 32.84 2.66
3595 3724 6.428159 ACAACAATTGCTACGAGAAAAGATCT 59.572 34.615 5.05 0.00 42.61 2.75
3625 3754 0.096976 CACCGCTATGCAAGGAAACG 59.903 55.000 7.70 0.00 0.00 3.60
3681 3810 9.695155 AGGCTCTTTTGCTACCTTAATATTTAA 57.305 29.630 0.00 0.00 0.00 1.52
3993 4122 0.176449 TCATGGACATGAGAGCCGTG 59.824 55.000 10.75 7.08 42.42 4.94
3996 4125 1.485124 TGGACATGAGAGCCGTGTAT 58.515 50.000 0.00 0.00 44.58 2.29
4008 4137 1.472728 GCCGTGTATGGAGGGTAAGTG 60.473 57.143 0.00 0.00 0.00 3.16
4044 4174 8.442632 TTTAGATCTCTCGATGATGCATTTTT 57.557 30.769 0.00 0.00 0.00 1.94
4225 4355 4.376146 TGAATATCGTGCCAATCGATTCA 58.624 39.130 7.92 1.12 43.98 2.57
4240 4370 0.473755 ATTCACCTGACACACTGCCA 59.526 50.000 0.00 0.00 0.00 4.92
4306 4436 2.348666 CGAATCTTTCAGCACTTACCCG 59.651 50.000 0.00 0.00 0.00 5.28
4318 4448 4.345257 AGCACTTACCCGAGAACATATGAT 59.655 41.667 10.38 0.00 0.00 2.45
4339 4469 2.697229 TCTCCTACATGCAGACCATCTG 59.303 50.000 1.29 1.29 46.90 2.90
4405 4538 5.551233 TGCAGTTTCTTCATACTTGCTAGT 58.449 37.500 6.00 6.00 38.44 2.57
4406 4539 6.697395 TGCAGTTTCTTCATACTTGCTAGTA 58.303 36.000 10.46 10.46 40.96 1.82
4408 4541 6.814146 GCAGTTTCTTCATACTTGCTAGTAGT 59.186 38.462 13.37 5.24 40.09 2.73
4409 4542 7.332182 GCAGTTTCTTCATACTTGCTAGTAGTT 59.668 37.037 13.37 0.00 40.09 2.24
4411 4544 9.780186 AGTTTCTTCATACTTGCTAGTAGTTTT 57.220 29.630 13.37 0.00 40.09 2.43
4412 4545 9.813080 GTTTCTTCATACTTGCTAGTAGTTTTG 57.187 33.333 13.37 7.14 40.09 2.44
4413 4546 9.772973 TTTCTTCATACTTGCTAGTAGTTTTGA 57.227 29.630 13.37 9.16 40.09 2.69
4415 4548 9.944376 TCTTCATACTTGCTAGTAGTTTTGATT 57.056 29.630 13.37 0.00 40.09 2.57
4423 4565 9.683069 CTTGCTAGTAGTTTTGATTTGAACAAT 57.317 29.630 0.00 0.00 0.00 2.71
4453 4595 7.389330 TGAGAAGGATTTATTTGCTTGACGTTA 59.611 33.333 0.00 0.00 0.00 3.18
4458 4600 7.390718 AGGATTTATTTGCTTGACGTTAGACTT 59.609 33.333 0.00 0.00 0.00 3.01
4460 4602 4.749245 ATTTGCTTGACGTTAGACTTGG 57.251 40.909 0.00 0.00 0.00 3.61
4464 4618 5.339008 TGCTTGACGTTAGACTTGGATAT 57.661 39.130 0.00 0.00 0.00 1.63
4482 4636 9.158233 CTTGGATATTTTACTTTTACCGACTGA 57.842 33.333 0.00 0.00 0.00 3.41
4526 4680 8.662781 TCTAGAAATACATGTGTAATTGGAGC 57.337 34.615 9.11 0.00 33.76 4.70
4528 4682 7.325660 AGAAATACATGTGTAATTGGAGCAG 57.674 36.000 9.11 0.00 33.76 4.24
4530 4684 7.394359 AGAAATACATGTGTAATTGGAGCAGTT 59.606 33.333 9.11 0.00 33.76 3.16
4537 4691 6.058833 TGTGTAATTGGAGCAGTTTACTGAA 58.941 36.000 13.83 0.00 46.59 3.02
4538 4692 6.204688 TGTGTAATTGGAGCAGTTTACTGAAG 59.795 38.462 13.83 0.00 46.59 3.02
4549 4703 3.560068 AGTTTACTGAAGCCAAACTGACG 59.440 43.478 8.90 0.00 40.16 4.35
4551 4705 0.180406 ACTGAAGCCAAACTGACGGT 59.820 50.000 0.00 0.00 0.00 4.83
4554 4708 1.021968 GAAGCCAAACTGACGGTTGT 58.978 50.000 0.00 0.00 38.29 3.32
4555 4709 2.215196 GAAGCCAAACTGACGGTTGTA 58.785 47.619 0.00 0.00 38.29 2.41
4563 4717 6.368213 CCAAACTGACGGTTGTAAATAGTTC 58.632 40.000 0.00 0.00 38.29 3.01
4567 4721 4.890088 TGACGGTTGTAAATAGTTCAGCT 58.110 39.130 0.00 0.00 0.00 4.24
4579 4733 7.954666 AAATAGTTCAGCTAAAAATAGGGCA 57.045 32.000 0.00 0.00 32.72 5.36
4580 4734 8.539117 AAATAGTTCAGCTAAAAATAGGGCAT 57.461 30.769 0.00 0.00 32.72 4.40
4586 4740 8.413229 GTTCAGCTAAAAATAGGGCATATTTGA 58.587 33.333 16.87 7.59 42.14 2.69
4592 4746 9.918630 CTAAAAATAGGGCATATTTGAATCCTG 57.081 33.333 16.87 2.08 42.14 3.86
4595 4749 9.432982 AAAATAGGGCATATTTGAATCCTGTAA 57.567 29.630 16.87 0.00 42.14 2.41
4596 4750 9.432982 AAATAGGGCATATTTGAATCCTGTAAA 57.567 29.630 15.60 0.00 41.55 2.01
4597 4751 6.966534 AGGGCATATTTGAATCCTGTAAAG 57.033 37.500 0.00 0.00 0.00 1.85
4598 4752 6.672593 AGGGCATATTTGAATCCTGTAAAGA 58.327 36.000 0.00 0.00 0.00 2.52
4599 4753 7.125391 AGGGCATATTTGAATCCTGTAAAGAA 58.875 34.615 0.00 0.00 0.00 2.52
4613 4767 7.919690 TCCTGTAAAGAATTTTCGCTATGATG 58.080 34.615 0.00 0.00 40.09 3.07
4614 4768 7.552687 TCCTGTAAAGAATTTTCGCTATGATGT 59.447 33.333 0.00 0.00 40.09 3.06
4617 4771 7.552687 TGTAAAGAATTTTCGCTATGATGTCCT 59.447 33.333 0.00 0.00 40.09 3.85
4619 4773 6.610741 AGAATTTTCGCTATGATGTCCTTC 57.389 37.500 0.00 0.00 0.00 3.46
4621 4775 2.509052 TTCGCTATGATGTCCTTCCG 57.491 50.000 0.00 0.00 0.00 4.30
4622 4776 1.687563 TCGCTATGATGTCCTTCCGA 58.312 50.000 0.00 0.00 0.00 4.55
4623 4777 1.337071 TCGCTATGATGTCCTTCCGAC 59.663 52.381 0.00 0.00 42.33 4.79
4624 4778 1.338337 CGCTATGATGTCCTTCCGACT 59.662 52.381 0.00 0.00 42.49 4.18
4626 4780 2.748605 CTATGATGTCCTTCCGACTGC 58.251 52.381 0.00 0.00 42.49 4.40
4627 4781 0.904649 ATGATGTCCTTCCGACTGCA 59.095 50.000 0.00 0.00 42.49 4.41
4628 4782 0.247460 TGATGTCCTTCCGACTGCAG 59.753 55.000 13.48 13.48 42.49 4.41
4630 4784 0.534412 ATGTCCTTCCGACTGCAGAG 59.466 55.000 23.35 13.71 42.49 3.35
4631 4785 0.539669 TGTCCTTCCGACTGCAGAGA 60.540 55.000 23.35 11.23 42.49 3.10
4633 4787 0.820226 TCCTTCCGACTGCAGAGATG 59.180 55.000 23.35 14.76 0.00 2.90
4634 4788 0.820226 CCTTCCGACTGCAGAGATGA 59.180 55.000 23.35 8.27 0.00 2.92
4636 4790 0.532573 TTCCGACTGCAGAGATGACC 59.467 55.000 23.35 0.00 0.00 4.02
4637 4791 1.142748 CCGACTGCAGAGATGACCC 59.857 63.158 23.35 0.00 0.00 4.46
4639 4793 1.393603 CGACTGCAGAGATGACCCTA 58.606 55.000 23.35 0.00 0.00 3.53
4641 4795 2.166459 CGACTGCAGAGATGACCCTAAA 59.834 50.000 23.35 0.00 0.00 1.85
4642 4796 3.368427 CGACTGCAGAGATGACCCTAAAA 60.368 47.826 23.35 0.00 0.00 1.52
4660 4878 9.679661 ACCCTAAAACAAAACATTTTCTTGAAT 57.320 25.926 0.00 0.00 31.79 2.57
4682 4900 0.961019 TTCCTGCAGTGCATCCAAAC 59.039 50.000 20.10 0.00 38.13 2.93
4686 4904 0.754587 TGCAGTGCATCCAAACACCA 60.755 50.000 15.37 0.00 37.51 4.17
4694 4912 1.267806 CATCCAAACACCACTCTGTGC 59.732 52.381 0.00 0.00 39.93 4.57
4695 4913 0.254462 TCCAAACACCACTCTGTGCA 59.746 50.000 0.00 0.00 39.93 4.57
4696 4914 1.102154 CCAAACACCACTCTGTGCAA 58.898 50.000 0.00 0.00 39.93 4.08
4700 4918 3.715628 AACACCACTCTGTGCAATTTC 57.284 42.857 0.00 0.00 39.93 2.17
4701 4919 2.936202 ACACCACTCTGTGCAATTTCT 58.064 42.857 0.00 0.00 39.93 2.52
4727 4945 8.373981 TGCATTTTCAATTCCTTTAGAAATCCA 58.626 29.630 0.00 0.00 38.21 3.41
4728 4946 8.659491 GCATTTTCAATTCCTTTAGAAATCCAC 58.341 33.333 0.00 0.00 38.21 4.02
4729 4947 8.863049 CATTTTCAATTCCTTTAGAAATCCACG 58.137 33.333 0.00 0.00 38.21 4.94
4755 5007 1.752498 TGCCACTCAATTCATGCATCC 59.248 47.619 0.00 0.00 0.00 3.51
4763 5015 2.363038 CAATTCATGCATCCGAATGGGT 59.637 45.455 11.77 0.00 37.00 4.51
4766 5018 1.212688 TCATGCATCCGAATGGGTCTT 59.787 47.619 0.00 0.00 37.00 3.01
4767 5019 1.335810 CATGCATCCGAATGGGTCTTG 59.664 52.381 0.00 0.00 37.00 3.02
4773 5025 4.262463 GCATCCGAATGGGTCTTGAGTATA 60.262 45.833 0.00 0.00 37.00 1.47
4776 5028 4.899457 TCCGAATGGGTCTTGAGTATATGT 59.101 41.667 0.00 0.00 37.00 2.29
4778 5030 4.449068 CGAATGGGTCTTGAGTATATGTGC 59.551 45.833 0.00 0.00 0.00 4.57
4780 5032 2.102420 TGGGTCTTGAGTATATGTGCCG 59.898 50.000 0.00 0.00 0.00 5.69
4781 5033 2.364324 GGGTCTTGAGTATATGTGCCGA 59.636 50.000 0.00 0.00 0.00 5.54
4782 5034 3.381949 GGTCTTGAGTATATGTGCCGAC 58.618 50.000 0.00 0.00 0.00 4.79
4783 5035 3.181479 GGTCTTGAGTATATGTGCCGACA 60.181 47.826 0.00 0.00 36.22 4.35
4784 5036 4.045104 GTCTTGAGTATATGTGCCGACAG 58.955 47.826 0.00 0.00 34.87 3.51
4785 5037 2.509052 TGAGTATATGTGCCGACAGC 57.491 50.000 0.00 0.00 44.14 4.40
4819 5186 5.238650 GCTATACCGGTTGCATAACTGAATT 59.761 40.000 15.04 0.00 44.32 2.17
4893 5260 1.217882 CGAGGTTGACCGGATATTGC 58.782 55.000 9.46 0.00 42.08 3.56
4923 5290 1.608025 GCAAACTGATCGTGAGGGACA 60.608 52.381 0.00 0.00 0.00 4.02
4950 5317 2.786578 GAGACAATAAGCGAGCTCGAAG 59.213 50.000 38.74 21.10 43.02 3.79
4999 5366 1.220749 GCATGACCTACGCCAAGGA 59.779 57.895 6.01 0.00 39.15 3.36
5072 5439 4.002982 TCGAAGCAAGCATGTAGTGAAAT 58.997 39.130 0.00 0.00 0.00 2.17
5081 5448 7.531871 GCAAGCATGTAGTGAAATATACATTCG 59.468 37.037 0.00 0.00 39.91 3.34
5083 5450 8.299262 AGCATGTAGTGAAATATACATTCGAC 57.701 34.615 0.00 0.00 39.91 4.20
5084 5451 7.114953 AGCATGTAGTGAAATATACATTCGACG 59.885 37.037 0.00 0.00 39.91 5.12
5086 5453 6.267070 TGTAGTGAAATATACATTCGACGCA 58.733 36.000 0.00 0.00 0.00 5.24
5091 5458 6.959311 GTGAAATATACATTCGACGCAAAACT 59.041 34.615 0.00 0.00 0.00 2.66
5095 5462 2.981875 ACATTCGACGCAAAACTGTTC 58.018 42.857 0.00 0.00 0.00 3.18
5108 5475 1.376812 CTGTTCCCGGTTAGTGGGC 60.377 63.158 0.00 0.00 46.92 5.36
5136 5506 7.277981 CGTATTACACTAGACTGAATTTTGGCT 59.722 37.037 0.00 0.00 0.00 4.75
5141 5511 6.211584 ACACTAGACTGAATTTTGGCTCTAGA 59.788 38.462 0.00 0.00 34.04 2.43
5307 5677 2.304470 TGTAATGCTGTACTGGAAGCCA 59.696 45.455 0.00 0.00 38.71 4.75
5317 5687 5.027460 TGTACTGGAAGCCAATAGGTAGAA 58.973 41.667 0.00 0.00 37.60 2.10
5399 5769 4.160439 AGCAGTCGAGTATCCTTGAATTCA 59.840 41.667 3.38 3.38 32.78 2.57
5407 5777 6.146837 CGAGTATCCTTGAATTCATGATGTCC 59.853 42.308 22.10 13.83 0.00 4.02
5409 5779 4.589647 TCCTTGAATTCATGATGTCCCA 57.410 40.909 19.94 0.00 0.00 4.37
5410 5780 4.933134 TCCTTGAATTCATGATGTCCCAA 58.067 39.130 19.94 0.00 0.00 4.12
5411 5781 4.706476 TCCTTGAATTCATGATGTCCCAAC 59.294 41.667 19.94 0.00 0.00 3.77
5412 5782 4.463539 CCTTGAATTCATGATGTCCCAACA 59.536 41.667 19.94 0.00 40.38 3.33
5413 5783 5.393787 CCTTGAATTCATGATGTCCCAACAG 60.394 44.000 19.94 5.62 39.20 3.16
5414 5784 4.920999 TGAATTCATGATGTCCCAACAGA 58.079 39.130 3.38 0.00 39.20 3.41
5415 5785 5.323581 TGAATTCATGATGTCCCAACAGAA 58.676 37.500 3.38 0.00 39.20 3.02
5416 5786 5.416639 TGAATTCATGATGTCCCAACAGAAG 59.583 40.000 3.38 0.00 39.20 2.85
5417 5787 4.639078 TTCATGATGTCCCAACAGAAGA 57.361 40.909 0.00 0.00 39.20 2.87
5418 5788 4.639078 TCATGATGTCCCAACAGAAGAA 57.361 40.909 0.00 0.00 39.20 2.52
5419 5789 4.984295 TCATGATGTCCCAACAGAAGAAA 58.016 39.130 0.00 0.00 39.20 2.52
5420 5790 5.384336 TCATGATGTCCCAACAGAAGAAAA 58.616 37.500 0.00 0.00 39.20 2.29
5421 5791 5.832595 TCATGATGTCCCAACAGAAGAAAAA 59.167 36.000 0.00 0.00 39.20 1.94
5448 5818 9.581099 AAAACTTGAATTATTTTCACAAGTCGT 57.419 25.926 0.00 0.00 46.37 4.34
5449 5819 9.581099 AAACTTGAATTATTTTCACAAGTCGTT 57.419 25.926 0.00 0.00 46.37 3.85
5450 5820 8.560576 ACTTGAATTATTTTCACAAGTCGTTG 57.439 30.769 0.00 0.00 44.75 4.10
5451 5821 6.984740 TGAATTATTTTCACAAGTCGTTGC 57.015 33.333 0.00 0.00 37.14 4.17
5452 5822 5.918011 TGAATTATTTTCACAAGTCGTTGCC 59.082 36.000 0.00 0.00 37.14 4.52
5453 5823 2.793278 ATTTTCACAAGTCGTTGCCC 57.207 45.000 0.00 0.00 37.14 5.36
5454 5824 1.757682 TTTTCACAAGTCGTTGCCCT 58.242 45.000 0.00 0.00 37.14 5.19
5455 5825 1.021202 TTTCACAAGTCGTTGCCCTG 58.979 50.000 0.00 0.00 37.14 4.45
5456 5826 0.179234 TTCACAAGTCGTTGCCCTGA 59.821 50.000 0.00 0.00 37.14 3.86
5457 5827 0.179234 TCACAAGTCGTTGCCCTGAA 59.821 50.000 0.00 0.00 37.14 3.02
5458 5828 0.307760 CACAAGTCGTTGCCCTGAAC 59.692 55.000 0.00 0.00 37.14 3.18
5459 5829 0.180406 ACAAGTCGTTGCCCTGAACT 59.820 50.000 0.00 0.00 37.14 3.01
5460 5830 0.868406 CAAGTCGTTGCCCTGAACTC 59.132 55.000 0.00 0.00 0.00 3.01
5461 5831 0.468226 AAGTCGTTGCCCTGAACTCA 59.532 50.000 0.00 0.00 0.00 3.41
5462 5832 0.034059 AGTCGTTGCCCTGAACTCAG 59.966 55.000 0.00 0.00 43.40 3.35
5463 5833 1.301716 TCGTTGCCCTGAACTCAGC 60.302 57.895 0.89 0.00 42.47 4.26
5464 5834 1.597854 CGTTGCCCTGAACTCAGCA 60.598 57.895 0.89 0.00 42.47 4.41
5465 5835 1.572085 CGTTGCCCTGAACTCAGCAG 61.572 60.000 0.89 0.00 42.47 4.24
5466 5836 0.536006 GTTGCCCTGAACTCAGCAGT 60.536 55.000 0.89 0.00 42.47 4.40
5467 5837 0.535780 TTGCCCTGAACTCAGCAGTG 60.536 55.000 0.89 0.00 42.47 3.66
5468 5838 1.072159 GCCCTGAACTCAGCAGTGT 59.928 57.895 0.89 0.00 42.47 3.55
5469 5839 0.536006 GCCCTGAACTCAGCAGTGTT 60.536 55.000 0.89 0.00 42.47 3.32
5470 5840 1.517242 CCCTGAACTCAGCAGTGTTC 58.483 55.000 14.86 14.86 44.45 3.18
5476 5846 3.397482 GAACTCAGCAGTGTTCATCAGT 58.603 45.455 16.32 0.00 43.93 3.41
5477 5847 3.482156 ACTCAGCAGTGTTCATCAGTT 57.518 42.857 0.00 0.00 0.00 3.16
5478 5848 3.397482 ACTCAGCAGTGTTCATCAGTTC 58.603 45.455 0.00 0.00 0.00 3.01
5479 5849 3.181462 ACTCAGCAGTGTTCATCAGTTCA 60.181 43.478 0.00 0.00 0.00 3.18
5480 5850 4.001652 CTCAGCAGTGTTCATCAGTTCAT 58.998 43.478 0.00 0.00 0.00 2.57
5481 5851 3.749609 TCAGCAGTGTTCATCAGTTCATG 59.250 43.478 0.00 0.00 0.00 3.07
5482 5852 3.501062 CAGCAGTGTTCATCAGTTCATGT 59.499 43.478 0.00 0.00 0.00 3.21
5483 5853 4.023450 CAGCAGTGTTCATCAGTTCATGTT 60.023 41.667 0.00 0.00 0.00 2.71
5484 5854 4.023450 AGCAGTGTTCATCAGTTCATGTTG 60.023 41.667 0.00 0.00 0.00 3.33
5485 5855 4.224433 CAGTGTTCATCAGTTCATGTTGC 58.776 43.478 0.00 0.00 0.00 4.17
5486 5856 3.254166 AGTGTTCATCAGTTCATGTTGCC 59.746 43.478 0.00 0.00 0.00 4.52
5487 5857 3.004629 GTGTTCATCAGTTCATGTTGCCA 59.995 43.478 0.00 0.00 0.00 4.92
5488 5858 3.635836 TGTTCATCAGTTCATGTTGCCAA 59.364 39.130 0.00 0.00 0.00 4.52
5489 5859 3.921119 TCATCAGTTCATGTTGCCAAC 57.079 42.857 0.00 0.00 0.00 3.77
5490 5860 3.489355 TCATCAGTTCATGTTGCCAACT 58.511 40.909 9.30 0.00 0.00 3.16
5491 5861 3.253921 TCATCAGTTCATGTTGCCAACTG 59.746 43.478 14.87 14.87 45.66 3.16
5492 5862 1.337703 TCAGTTCATGTTGCCAACTGC 59.662 47.619 15.80 0.00 44.49 4.40
5502 5872 2.938354 GCCAACTGCATCTGTCACT 58.062 52.632 0.00 0.00 40.77 3.41
5503 5873 0.520404 GCCAACTGCATCTGTCACTG 59.480 55.000 0.00 0.00 40.77 3.66
5504 5874 1.879372 GCCAACTGCATCTGTCACTGA 60.879 52.381 0.00 0.00 40.77 3.41
5505 5875 2.074576 CCAACTGCATCTGTCACTGAG 58.925 52.381 0.00 0.00 0.00 3.35
5506 5876 2.549563 CCAACTGCATCTGTCACTGAGT 60.550 50.000 0.00 0.00 0.00 3.41
5527 5897 3.769739 TTAGTGGAGCAGCTGAGAAAA 57.230 42.857 20.43 0.00 0.00 2.29
5531 5901 0.525311 GGAGCAGCTGAGAAAAAGCC 59.475 55.000 20.43 1.95 41.82 4.35
5532 5902 1.242076 GAGCAGCTGAGAAAAAGCCA 58.758 50.000 20.43 0.00 41.82 4.75
5533 5903 1.199558 GAGCAGCTGAGAAAAAGCCAG 59.800 52.381 20.43 0.00 41.82 4.85
5534 5904 1.202855 AGCAGCTGAGAAAAAGCCAGA 60.203 47.619 20.43 0.00 41.82 3.86
5535 5905 1.068679 GCAGCTGAGAAAAAGCCAGAC 60.069 52.381 20.43 0.00 41.82 3.51
5558 6021 1.815003 GCATGAACACTGGGAGGAAAG 59.185 52.381 0.00 0.00 0.00 2.62
5559 6022 2.440409 CATGAACACTGGGAGGAAAGG 58.560 52.381 0.00 0.00 0.00 3.11
5560 6023 1.814429 TGAACACTGGGAGGAAAGGA 58.186 50.000 0.00 0.00 0.00 3.36
5561 6024 2.131854 TGAACACTGGGAGGAAAGGAA 58.868 47.619 0.00 0.00 0.00 3.36
5562 6025 2.512056 TGAACACTGGGAGGAAAGGAAA 59.488 45.455 0.00 0.00 0.00 3.13
5564 6027 3.680777 ACACTGGGAGGAAAGGAAAAA 57.319 42.857 0.00 0.00 0.00 1.94
5566 6029 3.897505 ACACTGGGAGGAAAGGAAAAATG 59.102 43.478 0.00 0.00 0.00 2.32
5567 6030 3.897505 CACTGGGAGGAAAGGAAAAATGT 59.102 43.478 0.00 0.00 0.00 2.71
5568 6031 4.344968 CACTGGGAGGAAAGGAAAAATGTT 59.655 41.667 0.00 0.00 0.00 2.71
5569 6032 5.538433 CACTGGGAGGAAAGGAAAAATGTTA 59.462 40.000 0.00 0.00 0.00 2.41
5570 6033 5.538813 ACTGGGAGGAAAGGAAAAATGTTAC 59.461 40.000 0.00 0.00 0.00 2.50
5571 6034 4.521256 TGGGAGGAAAGGAAAAATGTTACG 59.479 41.667 0.00 0.00 0.00 3.18
5595 6058 4.541705 TCCTACCAGGAGATTCAGAGAAG 58.458 47.826 0.00 0.00 40.06 2.85
5616 6079 3.801698 GCATCACCTCTTATGCTTCTGA 58.198 45.455 0.00 0.00 44.08 3.27
5617 6080 4.387598 GCATCACCTCTTATGCTTCTGAT 58.612 43.478 0.00 0.00 44.08 2.90
5618 6081 5.545588 GCATCACCTCTTATGCTTCTGATA 58.454 41.667 0.00 0.00 44.08 2.15
5619 6082 5.407995 GCATCACCTCTTATGCTTCTGATAC 59.592 44.000 0.00 0.00 44.08 2.24
5620 6083 6.519382 CATCACCTCTTATGCTTCTGATACA 58.481 40.000 0.00 0.00 0.00 2.29
5621 6084 6.737720 TCACCTCTTATGCTTCTGATACAT 57.262 37.500 0.00 0.00 0.00 2.29
5622 6085 7.839680 TCACCTCTTATGCTTCTGATACATA 57.160 36.000 0.00 0.00 0.00 2.29
5623 6086 8.427902 TCACCTCTTATGCTTCTGATACATAT 57.572 34.615 2.23 0.00 0.00 1.78
5624 6087 8.874156 TCACCTCTTATGCTTCTGATACATATT 58.126 33.333 2.23 0.00 0.00 1.28
5625 6088 8.933807 CACCTCTTATGCTTCTGATACATATTG 58.066 37.037 2.23 0.67 0.00 1.90
5626 6089 8.654997 ACCTCTTATGCTTCTGATACATATTGT 58.345 33.333 2.23 0.00 0.00 2.71
5640 6136 4.621991 ACATATTGTAAGCAGTAGAGCCG 58.378 43.478 0.00 0.00 34.23 5.52
5654 6150 2.371306 AGAGCCGTAGAGGAAGAGAAC 58.629 52.381 0.00 0.00 45.00 3.01
5671 6167 1.831652 AACGGGACAGGAGGAAGCTG 61.832 60.000 0.00 0.00 0.00 4.24
5673 6169 2.297129 GGGACAGGAGGAAGCTGCT 61.297 63.158 0.00 0.00 0.00 4.24
5674 6170 1.078567 GGACAGGAGGAAGCTGCTG 60.079 63.158 1.35 0.00 46.24 4.41
5675 6171 1.078567 GACAGGAGGAAGCTGCTGG 60.079 63.158 1.35 0.00 45.31 4.85
5676 6172 2.271497 CAGGAGGAAGCTGCTGGG 59.729 66.667 1.35 0.00 38.82 4.45
5677 6173 2.123632 AGGAGGAAGCTGCTGGGA 59.876 61.111 1.35 0.00 0.00 4.37
5687 6219 3.643595 CTGCTGGGAAATGCCGGGA 62.644 63.158 2.18 0.00 37.63 5.14
5689 6221 1.981853 GCTGGGAAATGCCGGGAAA 60.982 57.895 0.00 0.00 37.63 3.13
5694 6226 1.413118 GGAAATGCCGGGAAATGGAT 58.587 50.000 0.00 0.00 0.00 3.41
5725 6268 1.942657 CAGCTTGCACACACTTACAGT 59.057 47.619 0.00 0.00 0.00 3.55
5726 6269 2.355756 CAGCTTGCACACACTTACAGTT 59.644 45.455 0.00 0.00 0.00 3.16
5737 6280 2.051692 ACTTACAGTTGTGGCCCACTA 58.948 47.619 16.23 4.31 35.11 2.74
5742 6285 0.035056 AGTTGTGGCCCACTATCAGC 60.035 55.000 16.23 0.00 35.11 4.26
5748 6291 1.005805 TGGCCCACTATCAGCATTTGT 59.994 47.619 0.00 0.00 0.00 2.83
5753 6296 3.956199 CCCACTATCAGCATTTGTTCCAT 59.044 43.478 0.00 0.00 0.00 3.41
5754 6297 4.403432 CCCACTATCAGCATTTGTTCCATT 59.597 41.667 0.00 0.00 0.00 3.16
5755 6298 5.450965 CCCACTATCAGCATTTGTTCCATTC 60.451 44.000 0.00 0.00 0.00 2.67
5756 6299 5.125900 CCACTATCAGCATTTGTTCCATTCA 59.874 40.000 0.00 0.00 0.00 2.57
5757 6300 6.350361 CCACTATCAGCATTTGTTCCATTCAA 60.350 38.462 0.00 0.00 0.00 2.69
5758 6301 7.262772 CACTATCAGCATTTGTTCCATTCAAT 58.737 34.615 0.00 0.00 0.00 2.57
5759 6302 7.222031 CACTATCAGCATTTGTTCCATTCAATG 59.778 37.037 0.00 0.00 0.00 2.82
5760 6303 4.247258 TCAGCATTTGTTCCATTCAATGC 58.753 39.130 7.49 7.49 33.75 3.56
5761 6304 3.372822 CAGCATTTGTTCCATTCAATGCC 59.627 43.478 11.18 0.00 33.89 4.40
5762 6305 2.349275 GCATTTGTTCCATTCAATGCCG 59.651 45.455 4.68 0.00 0.00 5.69
5763 6306 3.847542 CATTTGTTCCATTCAATGCCGA 58.152 40.909 0.00 0.00 0.00 5.54
5764 6307 3.296322 TTTGTTCCATTCAATGCCGAC 57.704 42.857 0.00 0.00 0.00 4.79
5765 6308 0.801872 TGTTCCATTCAATGCCGACG 59.198 50.000 0.00 0.00 0.00 5.12
5766 6309 0.523335 GTTCCATTCAATGCCGACGC 60.523 55.000 0.00 0.00 0.00 5.19
5778 6321 2.622629 CGACGCATCGCATGGAAG 59.377 61.111 0.00 0.00 42.43 3.46
5779 6322 2.874694 CGACGCATCGCATGGAAGG 61.875 63.158 0.00 0.00 42.43 3.46
5780 6323 2.514592 ACGCATCGCATGGAAGGG 60.515 61.111 0.00 0.00 33.09 3.95
5781 6324 3.282157 CGCATCGCATGGAAGGGG 61.282 66.667 0.00 0.00 0.00 4.79
5801 6344 1.059913 CTGGTGGTCTCCCTGACTTT 58.940 55.000 0.00 0.00 44.74 2.66
5867 6414 4.374702 CGCACAAGACACGCCTGC 62.375 66.667 0.00 0.00 0.00 4.85
5905 6452 4.806330 TCGTCAGTTAACATCTTCAGTCC 58.194 43.478 8.61 0.00 0.00 3.85
5912 6459 1.550327 ACATCTTCAGTCCGCTCTCA 58.450 50.000 0.00 0.00 0.00 3.27
6004 6555 1.226802 CATCCGGAGCGTCACAGAG 60.227 63.158 11.34 0.00 0.00 3.35
6022 6573 3.817148 GAGAGCTACTCTACATACGCC 57.183 52.381 0.00 0.00 41.35 5.68
6023 6574 3.404899 GAGAGCTACTCTACATACGCCT 58.595 50.000 0.00 0.00 41.35 5.52
6024 6575 3.142951 AGAGCTACTCTACATACGCCTG 58.857 50.000 0.00 0.00 39.28 4.85
6025 6576 1.609555 AGCTACTCTACATACGCCTGC 59.390 52.381 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.508762 ACTTTTATGTACTCACGCTCCG 58.491 45.455 0.00 0.00 0.00 4.63
1 2 5.287992 GTGTACTTTTATGTACTCACGCTCC 59.712 44.000 6.41 0.00 42.22 4.70
2 3 5.860182 TGTGTACTTTTATGTACTCACGCTC 59.140 40.000 6.41 0.00 42.22 5.03
3 4 5.775686 TGTGTACTTTTATGTACTCACGCT 58.224 37.500 6.41 0.00 42.22 5.07
4 5 6.642683 ATGTGTACTTTTATGTACTCACGC 57.357 37.500 10.38 0.00 44.29 5.34
5 6 7.044510 CGGTATGTGTACTTTTATGTACTCACG 60.045 40.741 10.38 7.43 44.29 4.35
6 7 7.221452 CCGGTATGTGTACTTTTATGTACTCAC 59.779 40.741 10.38 0.00 44.29 3.51
7 8 7.259882 CCGGTATGTGTACTTTTATGTACTCA 58.740 38.462 10.52 10.52 45.01 3.41
8 9 6.199719 GCCGGTATGTGTACTTTTATGTACTC 59.800 42.308 1.90 3.85 42.22 2.59
9 10 6.044682 GCCGGTATGTGTACTTTTATGTACT 58.955 40.000 1.90 0.00 42.22 2.73
10 11 6.019318 CAGCCGGTATGTGTACTTTTATGTAC 60.019 42.308 1.90 0.00 42.10 2.90
11 12 6.044046 CAGCCGGTATGTGTACTTTTATGTA 58.956 40.000 1.90 0.00 0.00 2.29
12 13 4.873827 CAGCCGGTATGTGTACTTTTATGT 59.126 41.667 1.90 0.00 0.00 2.29
13 14 4.272504 CCAGCCGGTATGTGTACTTTTATG 59.727 45.833 1.90 0.00 0.00 1.90
14 15 4.080751 ACCAGCCGGTATGTGTACTTTTAT 60.081 41.667 1.90 0.00 46.71 1.40
30 31 1.937223 TCGCATTATTGTAACCAGCCG 59.063 47.619 0.00 0.00 0.00 5.52
38 39 1.684450 TCTCGGGCTCGCATTATTGTA 59.316 47.619 0.00 0.00 36.13 2.41
144 145 1.383456 GGCAGTGGCGATGGCATTAA 61.383 55.000 0.00 0.00 42.45 1.40
213 214 2.442272 GGAGGAGCGAGGGCAGTA 60.442 66.667 0.00 0.00 43.41 2.74
290 291 2.747460 TGCTTGGATCCGCAGTGC 60.747 61.111 9.98 4.58 0.00 4.40
478 485 1.094785 CCTAAACCACTGGCCAATCG 58.905 55.000 7.01 0.00 0.00 3.34
497 504 1.063166 GCCATAGCAAAGCAGCGAC 59.937 57.895 0.00 0.00 40.15 5.19
500 507 2.278401 GCGCCATAGCAAAGCAGC 60.278 61.111 0.00 0.00 39.83 5.25
502 509 3.140141 GGGCGCCATAGCAAAGCA 61.140 61.111 30.85 0.00 39.83 3.91
517 524 2.474816 GCAGTCTAAGACAATAGCGGG 58.525 52.381 0.00 0.00 34.60 6.13
597 611 1.689243 GGCAAATCCCCATTCCTGCC 61.689 60.000 0.00 0.00 38.27 4.85
598 612 0.977108 TGGCAAATCCCCATTCCTGC 60.977 55.000 0.00 0.00 0.00 4.85
644 660 2.287915 AGCACGCAAACAGAACTACAAG 59.712 45.455 0.00 0.00 0.00 3.16
653 674 2.462255 ATCGGCAAGCACGCAAACAG 62.462 55.000 0.00 0.00 0.00 3.16
680 701 6.397272 CCATGAAAAAGGCAAGCAAATACTA 58.603 36.000 0.00 0.00 0.00 1.82
681 702 5.240121 CCATGAAAAAGGCAAGCAAATACT 58.760 37.500 0.00 0.00 0.00 2.12
682 703 5.535043 CCATGAAAAAGGCAAGCAAATAC 57.465 39.130 0.00 0.00 0.00 1.89
731 752 7.092716 TGTTTCCGTATCTTGTTTCCTACTAC 58.907 38.462 0.00 0.00 0.00 2.73
732 753 7.230849 TGTTTCCGTATCTTGTTTCCTACTA 57.769 36.000 0.00 0.00 0.00 1.82
733 754 6.105397 TGTTTCCGTATCTTGTTTCCTACT 57.895 37.500 0.00 0.00 0.00 2.57
787 808 0.036952 CCGGATCCGCAGAGCATTAT 60.037 55.000 29.12 0.00 38.24 1.28
819 840 1.888512 CCAACCAAACCACCAGATCTG 59.111 52.381 16.24 16.24 0.00 2.90
903 925 4.539083 TTCTGCCACACACCGCGT 62.539 61.111 4.92 0.00 0.00 6.01
965 987 2.284112 GTACAGGACCACCCCCGA 60.284 66.667 0.00 0.00 36.73 5.14
992 1015 0.971959 GCCAAATGCCATCAGTCCCA 60.972 55.000 0.00 0.00 0.00 4.37
1125 1148 2.656069 CGGGAAGACGGTGGTGGAT 61.656 63.158 0.00 0.00 0.00 3.41
1422 1445 4.618378 ATCCTTACTGTCCTCCTTCTCT 57.382 45.455 0.00 0.00 0.00 3.10
1446 1469 7.547722 TCTGATTTTCCATTTGCATCATCAAAG 59.452 33.333 0.00 0.00 39.06 2.77
1449 1472 6.532988 TCTGATTTTCCATTTGCATCATCA 57.467 33.333 0.00 0.00 0.00 3.07
1515 1538 1.066908 GTGCTCTTCTCCTCCTCATCG 59.933 57.143 0.00 0.00 0.00 3.84
1713 1760 3.777465 TTCTCGGTATTCGACTCCTTG 57.223 47.619 0.00 0.00 43.74 3.61
2065 2112 4.787598 CAAAAGGAGAAGTTGATCAACCG 58.212 43.478 30.34 6.81 42.06 4.44
2107 2154 2.432444 TGCTGTACCATACCTGCAAAC 58.568 47.619 0.00 0.00 35.38 2.93
2189 2236 3.054139 CCCCAGGAAACAGAAGATGATCA 60.054 47.826 0.00 0.00 0.00 2.92
2360 2408 4.381292 GCAATTTCCTTCAAGGGAGTGATG 60.381 45.833 2.75 0.00 35.59 3.07
2378 2426 2.559668 CAGTCCTGGAACATGTGCAATT 59.440 45.455 6.08 0.00 38.20 2.32
2403 2451 8.842358 AAGAAAGAACATGCAAATTTCATCAT 57.158 26.923 12.82 0.00 33.36 2.45
2473 2526 6.959311 CACGGTAGTTTGATAAGCATGTAAAC 59.041 38.462 0.00 0.00 0.00 2.01
2507 2560 3.795688 ACCCCATGCAATATCAGGTAG 57.204 47.619 0.00 0.00 0.00 3.18
2593 2646 3.865446 TGACATGGTAAGCACATCTCTG 58.135 45.455 0.00 0.00 0.00 3.35
2806 2859 7.719871 AGTTACTAGTTAGCAGGAGAAATCA 57.280 36.000 0.00 0.00 0.00 2.57
3003 3123 6.702329 ACGAGTGATATTGAAAGAGGAGTTT 58.298 36.000 0.00 0.00 0.00 2.66
3065 3185 6.264518 ACAGAGGAAAATAACGGTTTTGACAT 59.735 34.615 0.00 0.00 31.80 3.06
3067 3187 6.068473 ACAGAGGAAAATAACGGTTTTGAC 57.932 37.500 0.00 0.00 31.80 3.18
3213 3334 7.865665 AACTTCTGTTACAAGCAACGTGTGC 62.866 44.000 12.81 12.81 43.50 4.57
3263 3384 4.853924 ATCAGCCGTTGTGAAAAAGAAT 57.146 36.364 0.00 0.00 0.00 2.40
3315 3444 8.924303 ACATCTAGTGCTAACCAATAGTTCATA 58.076 33.333 0.00 0.00 41.58 2.15
3388 3517 0.388659 GCAGTTGGTTTGTGGCATGA 59.611 50.000 0.00 0.00 0.00 3.07
3414 3543 6.122277 GGTTCACCTGGATGATAGATGAAAA 58.878 40.000 0.00 0.00 0.00 2.29
3681 3810 7.856415 AGAAAAGGCAGAGTAGTTCAGATATT 58.144 34.615 0.00 0.00 0.00 1.28
3903 4032 2.353579 ACTTACAACACGTTTCCAGTGC 59.646 45.455 0.00 0.00 42.94 4.40
3993 4122 3.136626 AGCCATTCACTTACCCTCCATAC 59.863 47.826 0.00 0.00 0.00 2.39
3996 4125 1.668826 AGCCATTCACTTACCCTCCA 58.331 50.000 0.00 0.00 0.00 3.86
4008 4137 4.210955 CGAGAGATCTAAAGCAAGCCATTC 59.789 45.833 0.00 0.00 0.00 2.67
4044 4174 8.187913 TGTGAAATGAGTGGGATTCAAAATAA 57.812 30.769 0.00 0.00 33.93 1.40
4045 4175 7.773489 TGTGAAATGAGTGGGATTCAAAATA 57.227 32.000 0.00 0.00 33.93 1.40
4076 4206 8.713737 TCTCATTATGAGTGTTCTTGAATGAG 57.286 34.615 20.09 13.12 44.58 2.90
4145 4275 5.717038 AAACTGCAAAGCAACAAATGTAC 57.283 34.783 0.00 0.00 38.41 2.90
4225 4355 1.321474 CAATTGGCAGTGTGTCAGGT 58.679 50.000 0.00 0.00 31.48 4.00
4240 4370 3.255642 ACAAGCCACGCTCATAAACAATT 59.744 39.130 0.00 0.00 38.25 2.32
4306 4436 6.695429 TGCATGTAGGAGATCATATGTTCTC 58.305 40.000 25.98 25.98 39.16 2.87
4318 4448 2.697229 CAGATGGTCTGCATGTAGGAGA 59.303 50.000 11.15 0.00 42.99 3.71
4339 4469 5.298026 AGACCTCTTTTTGAGCTTTGAGAAC 59.702 40.000 0.00 0.00 41.35 3.01
4363 4493 5.703592 ACTGCAACCGAGACAATAAATTACA 59.296 36.000 0.00 0.00 0.00 2.41
4366 4496 5.705609 AACTGCAACCGAGACAATAAATT 57.294 34.783 0.00 0.00 0.00 1.82
4367 4497 5.473504 AGAAACTGCAACCGAGACAATAAAT 59.526 36.000 0.00 0.00 0.00 1.40
4405 4538 9.119418 TCTCACTCATTGTTCAAATCAAAACTA 57.881 29.630 0.00 0.00 0.00 2.24
4406 4539 7.999679 TCTCACTCATTGTTCAAATCAAAACT 58.000 30.769 0.00 0.00 0.00 2.66
4408 4541 7.922278 CCTTCTCACTCATTGTTCAAATCAAAA 59.078 33.333 0.00 0.00 0.00 2.44
4409 4542 7.285172 TCCTTCTCACTCATTGTTCAAATCAAA 59.715 33.333 0.00 0.00 0.00 2.69
4411 4544 6.298361 TCCTTCTCACTCATTGTTCAAATCA 58.702 36.000 0.00 0.00 0.00 2.57
4412 4545 6.808008 TCCTTCTCACTCATTGTTCAAATC 57.192 37.500 0.00 0.00 0.00 2.17
4413 4546 7.771927 AATCCTTCTCACTCATTGTTCAAAT 57.228 32.000 0.00 0.00 0.00 2.32
4415 4548 8.868522 ATAAATCCTTCTCACTCATTGTTCAA 57.131 30.769 0.00 0.00 0.00 2.69
4416 4549 8.868522 AATAAATCCTTCTCACTCATTGTTCA 57.131 30.769 0.00 0.00 0.00 3.18
4417 4550 9.565213 CAAATAAATCCTTCTCACTCATTGTTC 57.435 33.333 0.00 0.00 0.00 3.18
4423 4565 6.942005 TCAAGCAAATAAATCCTTCTCACTCA 59.058 34.615 0.00 0.00 0.00 3.41
4453 4595 9.159364 GTCGGTAAAAGTAAAATATCCAAGTCT 57.841 33.333 0.00 0.00 0.00 3.24
4458 4600 9.675464 AATCAGTCGGTAAAAGTAAAATATCCA 57.325 29.630 0.00 0.00 0.00 3.41
4501 4655 8.264347 TGCTCCAATTACACATGTATTTCTAGA 58.736 33.333 0.00 0.00 0.00 2.43
4503 4657 8.046708 ACTGCTCCAATTACACATGTATTTCTA 58.953 33.333 0.00 0.00 0.00 2.10
4506 4660 7.466746 AACTGCTCCAATTACACATGTATTT 57.533 32.000 0.00 0.00 0.00 1.40
4507 4661 7.466746 AAACTGCTCCAATTACACATGTATT 57.533 32.000 0.00 0.00 0.00 1.89
4508 4662 7.829211 AGTAAACTGCTCCAATTACACATGTAT 59.171 33.333 0.00 0.00 32.10 2.29
4511 4665 6.149308 TCAGTAAACTGCTCCAATTACACATG 59.851 38.462 5.21 0.00 43.46 3.21
4517 4671 4.700213 GGCTTCAGTAAACTGCTCCAATTA 59.300 41.667 5.21 0.00 43.46 1.40
4518 4672 3.507622 GGCTTCAGTAAACTGCTCCAATT 59.492 43.478 5.21 0.00 43.46 2.32
4520 4674 2.158682 TGGCTTCAGTAAACTGCTCCAA 60.159 45.455 5.21 0.00 43.46 3.53
4523 4677 3.565902 AGTTTGGCTTCAGTAAACTGCTC 59.434 43.478 5.21 0.00 41.57 4.26
4525 4679 3.990318 AGTTTGGCTTCAGTAAACTGC 57.010 42.857 5.21 0.00 41.57 4.40
4528 4682 3.303791 CCGTCAGTTTGGCTTCAGTAAAC 60.304 47.826 0.00 0.00 35.19 2.01
4530 4684 2.158871 ACCGTCAGTTTGGCTTCAGTAA 60.159 45.455 0.00 0.00 0.00 2.24
4537 4691 2.335316 TTACAACCGTCAGTTTGGCT 57.665 45.000 0.00 0.00 36.18 4.75
4538 4692 3.636282 ATTTACAACCGTCAGTTTGGC 57.364 42.857 0.00 0.00 36.18 4.52
4554 4708 9.640952 ATGCCCTATTTTTAGCTGAACTATTTA 57.359 29.630 0.00 0.00 0.00 1.40
4555 4709 7.954666 TGCCCTATTTTTAGCTGAACTATTT 57.045 32.000 0.00 0.00 0.00 1.40
4563 4717 9.415544 GATTCAAATATGCCCTATTTTTAGCTG 57.584 33.333 0.00 0.00 37.84 4.24
4567 4721 9.432982 ACAGGATTCAAATATGCCCTATTTTTA 57.567 29.630 0.00 0.00 37.84 1.52
4580 4734 9.567848 GCGAAAATTCTTTACAGGATTCAAATA 57.432 29.630 0.00 0.00 26.54 1.40
4586 4740 8.506168 TCATAGCGAAAATTCTTTACAGGATT 57.494 30.769 0.00 0.00 27.90 3.01
4592 4746 7.920738 AGGACATCATAGCGAAAATTCTTTAC 58.079 34.615 0.00 0.00 0.00 2.01
4595 4749 6.038714 GGAAGGACATCATAGCGAAAATTCTT 59.961 38.462 0.00 0.00 0.00 2.52
4596 4750 5.529060 GGAAGGACATCATAGCGAAAATTCT 59.471 40.000 0.00 0.00 0.00 2.40
4597 4751 5.559035 CGGAAGGACATCATAGCGAAAATTC 60.559 44.000 0.00 0.00 0.00 2.17
4598 4752 4.273480 CGGAAGGACATCATAGCGAAAATT 59.727 41.667 0.00 0.00 0.00 1.82
4599 4753 3.809832 CGGAAGGACATCATAGCGAAAAT 59.190 43.478 0.00 0.00 0.00 1.82
4604 4758 1.772182 GTCGGAAGGACATCATAGCG 58.228 55.000 0.00 0.00 45.36 4.26
4613 4767 0.820871 ATCTCTGCAGTCGGAAGGAC 59.179 55.000 14.67 0.00 46.45 3.85
4614 4768 0.820226 CATCTCTGCAGTCGGAAGGA 59.180 55.000 14.67 2.76 0.00 3.36
4617 4771 0.532573 GGTCATCTCTGCAGTCGGAA 59.467 55.000 14.67 0.00 0.00 4.30
4619 4773 1.142748 GGGTCATCTCTGCAGTCGG 59.857 63.158 14.67 5.72 0.00 4.79
4621 4775 3.895232 TTTAGGGTCATCTCTGCAGTC 57.105 47.619 14.67 0.00 0.00 3.51
4622 4776 3.327757 TGTTTTAGGGTCATCTCTGCAGT 59.672 43.478 14.67 0.00 0.00 4.40
4623 4777 3.942829 TGTTTTAGGGTCATCTCTGCAG 58.057 45.455 7.63 7.63 0.00 4.41
4624 4778 4.365514 TTGTTTTAGGGTCATCTCTGCA 57.634 40.909 0.00 0.00 0.00 4.41
4626 4780 6.633500 TGTTTTGTTTTAGGGTCATCTCTG 57.367 37.500 0.00 0.00 0.00 3.35
4627 4781 7.839680 AATGTTTTGTTTTAGGGTCATCTCT 57.160 32.000 0.00 0.00 0.00 3.10
4628 4782 8.887036 AAAATGTTTTGTTTTAGGGTCATCTC 57.113 30.769 0.00 0.00 0.00 2.75
4630 4784 8.887036 AGAAAATGTTTTGTTTTAGGGTCATC 57.113 30.769 0.00 0.00 0.00 2.92
4631 4785 9.108284 CAAGAAAATGTTTTGTTTTAGGGTCAT 57.892 29.630 0.00 0.00 32.17 3.06
4633 4787 8.710835 TCAAGAAAATGTTTTGTTTTAGGGTC 57.289 30.769 0.00 0.00 32.17 4.46
4634 4788 9.679661 ATTCAAGAAAATGTTTTGTTTTAGGGT 57.320 25.926 0.00 0.00 32.17 4.34
4660 4878 2.804986 TGGATGCACTGCAGGAATAA 57.195 45.000 19.93 0.00 43.65 1.40
4682 4900 3.278367 CAGAAATTGCACAGAGTGGTG 57.722 47.619 0.00 0.00 41.72 4.17
4700 4918 8.876790 GGATTTCTAAAGGAATTGAAAATGCAG 58.123 33.333 0.00 0.00 33.09 4.41
4701 4919 8.373981 TGGATTTCTAAAGGAATTGAAAATGCA 58.626 29.630 0.00 0.00 34.90 3.96
4704 4922 8.034804 CCGTGGATTTCTAAAGGAATTGAAAAT 58.965 33.333 0.00 0.00 33.09 1.82
4705 4923 7.375053 CCGTGGATTTCTAAAGGAATTGAAAA 58.625 34.615 0.00 0.00 33.09 2.29
4706 4924 6.571537 GCCGTGGATTTCTAAAGGAATTGAAA 60.572 38.462 0.00 0.00 33.53 2.69
4709 4927 4.157656 TGCCGTGGATTTCTAAAGGAATTG 59.842 41.667 0.00 0.00 33.53 2.32
4710 4928 4.157840 GTGCCGTGGATTTCTAAAGGAATT 59.842 41.667 0.00 0.00 33.53 2.17
4711 4929 3.694566 GTGCCGTGGATTTCTAAAGGAAT 59.305 43.478 0.00 0.00 33.53 3.01
4712 4930 3.078837 GTGCCGTGGATTTCTAAAGGAA 58.921 45.455 0.00 0.00 0.00 3.36
4713 4931 2.039216 TGTGCCGTGGATTTCTAAAGGA 59.961 45.455 0.00 0.00 0.00 3.36
4714 4932 2.432444 TGTGCCGTGGATTTCTAAAGG 58.568 47.619 0.00 0.00 0.00 3.11
4715 4933 3.731867 GCATGTGCCGTGGATTTCTAAAG 60.732 47.826 0.00 0.00 34.31 1.85
4716 4934 2.163412 GCATGTGCCGTGGATTTCTAAA 59.837 45.455 0.00 0.00 34.31 1.85
4717 4935 1.742831 GCATGTGCCGTGGATTTCTAA 59.257 47.619 0.00 0.00 34.31 2.10
4718 4936 1.378531 GCATGTGCCGTGGATTTCTA 58.621 50.000 0.00 0.00 34.31 2.10
4720 4938 4.792106 GCATGTGCCGTGGATTTC 57.208 55.556 0.00 0.00 34.31 2.17
4755 5007 4.449068 GCACATATACTCAAGACCCATTCG 59.551 45.833 0.00 0.00 0.00 3.34
4763 5015 3.490933 GCTGTCGGCACATATACTCAAGA 60.491 47.826 0.00 0.00 41.35 3.02
4766 5018 2.509052 GCTGTCGGCACATATACTCA 57.491 50.000 0.00 0.00 41.35 3.41
4778 5030 2.174107 CACGCAACATGCTGTCGG 59.826 61.111 14.34 1.64 42.25 4.79
4784 5036 0.042188 CGGTATAGCACGCAACATGC 60.042 55.000 2.37 0.00 43.74 4.06
4785 5037 0.581529 CCGGTATAGCACGCAACATG 59.418 55.000 2.37 0.00 0.00 3.21
4786 5038 0.177141 ACCGGTATAGCACGCAACAT 59.823 50.000 4.49 0.00 0.00 2.71
4787 5039 0.037139 AACCGGTATAGCACGCAACA 60.037 50.000 8.00 0.00 0.00 3.33
4788 5040 0.372334 CAACCGGTATAGCACGCAAC 59.628 55.000 8.00 0.00 0.00 4.17
4796 5139 6.260050 ACAATTCAGTTATGCAACCGGTATAG 59.740 38.462 8.00 1.66 35.05 1.31
4843 5210 3.689161 TCCCAACAATTTACATCTGCGAG 59.311 43.478 0.00 0.00 0.00 5.03
4923 5290 0.108992 TCGCTTATTGTCTCCGCGTT 60.109 50.000 4.92 0.00 43.78 4.84
4950 5317 2.825836 CAGGGACTTCGCCATGCC 60.826 66.667 0.00 0.00 34.60 4.40
4999 5366 1.377994 CAGAGCAGCCCTTCCTTGT 59.622 57.895 0.00 0.00 0.00 3.16
5072 5439 5.163933 GGAACAGTTTTGCGTCGAATGTATA 60.164 40.000 0.00 0.00 0.00 1.47
5081 5448 1.281656 CCGGGAACAGTTTTGCGTC 59.718 57.895 0.00 0.00 0.00 5.19
5083 5450 0.945813 TAACCGGGAACAGTTTTGCG 59.054 50.000 6.32 0.00 0.00 4.85
5084 5451 1.951602 ACTAACCGGGAACAGTTTTGC 59.048 47.619 6.32 0.00 0.00 3.68
5086 5453 2.578786 CCACTAACCGGGAACAGTTTT 58.421 47.619 6.32 0.00 0.00 2.43
5108 5475 8.380644 CCAAAATTCAGTCTAGTGTAATACGTG 58.619 37.037 0.00 0.00 0.00 4.49
5244 5614 4.370917 TGTCCAAGCAAAAGAAAGAATGC 58.629 39.130 0.00 0.00 39.06 3.56
5307 5677 1.134907 CGTGCCGTGGTTCTACCTATT 60.135 52.381 0.00 0.00 39.58 1.73
5385 5755 6.064060 TGGGACATCATGAATTCAAGGATAC 58.936 40.000 19.61 16.61 0.00 2.24
5387 5757 5.133383 TGGGACATCATGAATTCAAGGAT 57.867 39.130 13.09 15.01 0.00 3.24
5422 5792 9.581099 ACGACTTGTGAAAATAATTCAAGTTTT 57.419 25.926 9.60 0.84 45.30 2.43
5423 5793 9.581099 AACGACTTGTGAAAATAATTCAAGTTT 57.419 25.926 9.60 0.56 45.30 2.66
5424 5794 9.019764 CAACGACTTGTGAAAATAATTCAAGTT 57.980 29.630 9.60 0.00 45.30 2.66
5426 5796 7.358352 GGCAACGACTTGTGAAAATAATTCAAG 60.358 37.037 0.00 0.00 40.54 3.02
5427 5797 6.419413 GGCAACGACTTGTGAAAATAATTCAA 59.581 34.615 0.00 0.00 0.00 2.69
5428 5798 5.918011 GGCAACGACTTGTGAAAATAATTCA 59.082 36.000 0.00 0.00 0.00 2.57
5429 5799 5.344933 GGGCAACGACTTGTGAAAATAATTC 59.655 40.000 0.00 0.00 37.60 2.17
5430 5800 5.010617 AGGGCAACGACTTGTGAAAATAATT 59.989 36.000 0.00 0.00 37.60 1.40
5431 5801 4.522789 AGGGCAACGACTTGTGAAAATAAT 59.477 37.500 0.00 0.00 37.60 1.28
5432 5802 3.886505 AGGGCAACGACTTGTGAAAATAA 59.113 39.130 0.00 0.00 37.60 1.40
5433 5803 3.252215 CAGGGCAACGACTTGTGAAAATA 59.748 43.478 0.00 0.00 37.60 1.40
5434 5804 2.034558 CAGGGCAACGACTTGTGAAAAT 59.965 45.455 0.00 0.00 37.60 1.82
5435 5805 1.403679 CAGGGCAACGACTTGTGAAAA 59.596 47.619 0.00 0.00 37.60 2.29
5436 5806 1.021202 CAGGGCAACGACTTGTGAAA 58.979 50.000 0.00 0.00 37.60 2.69
5437 5807 0.179234 TCAGGGCAACGACTTGTGAA 59.821 50.000 0.00 0.00 37.60 3.18
5438 5808 0.179234 TTCAGGGCAACGACTTGTGA 59.821 50.000 0.00 0.00 37.60 3.58
5439 5809 0.307760 GTTCAGGGCAACGACTTGTG 59.692 55.000 0.00 0.00 37.60 3.33
5440 5810 0.180406 AGTTCAGGGCAACGACTTGT 59.820 50.000 0.00 0.00 37.60 3.16
5441 5811 0.868406 GAGTTCAGGGCAACGACTTG 59.132 55.000 0.00 0.00 37.60 3.16
5442 5812 0.468226 TGAGTTCAGGGCAACGACTT 59.532 50.000 0.00 0.00 37.60 3.01
5443 5813 0.034059 CTGAGTTCAGGGCAACGACT 59.966 55.000 1.09 0.00 40.20 4.18
5444 5814 1.569479 GCTGAGTTCAGGGCAACGAC 61.569 60.000 10.88 0.00 43.94 4.34
5445 5815 1.301716 GCTGAGTTCAGGGCAACGA 60.302 57.895 10.88 0.00 43.94 3.85
5446 5816 1.572085 CTGCTGAGTTCAGGGCAACG 61.572 60.000 10.88 0.00 43.94 4.10
5447 5817 0.536006 ACTGCTGAGTTCAGGGCAAC 60.536 55.000 10.88 0.00 43.94 4.17
5448 5818 0.535780 CACTGCTGAGTTCAGGGCAA 60.536 55.000 10.88 0.00 43.94 4.52
5449 5819 1.071987 CACTGCTGAGTTCAGGGCA 59.928 57.895 10.88 3.94 43.94 5.36
5450 5820 0.536006 AACACTGCTGAGTTCAGGGC 60.536 55.000 10.88 0.00 43.94 5.19
5451 5821 1.202687 TGAACACTGCTGAGTTCAGGG 60.203 52.381 25.06 0.00 44.55 4.45
5452 5822 2.245159 TGAACACTGCTGAGTTCAGG 57.755 50.000 25.06 0.00 44.55 3.86
5455 5825 3.397482 ACTGATGAACACTGCTGAGTTC 58.603 45.455 21.34 21.34 41.81 3.01
5456 5826 3.482156 ACTGATGAACACTGCTGAGTT 57.518 42.857 6.13 6.13 0.00 3.01
5457 5827 3.181462 TGAACTGATGAACACTGCTGAGT 60.181 43.478 0.00 0.00 0.00 3.41
5458 5828 3.396560 TGAACTGATGAACACTGCTGAG 58.603 45.455 0.00 0.00 0.00 3.35
5459 5829 3.473923 TGAACTGATGAACACTGCTGA 57.526 42.857 0.00 0.00 0.00 4.26
5460 5830 3.501062 ACATGAACTGATGAACACTGCTG 59.499 43.478 0.00 0.00 0.00 4.41
5461 5831 3.748083 ACATGAACTGATGAACACTGCT 58.252 40.909 0.00 0.00 0.00 4.24
5462 5832 4.224433 CAACATGAACTGATGAACACTGC 58.776 43.478 0.00 0.00 29.46 4.40
5463 5833 4.224433 GCAACATGAACTGATGAACACTG 58.776 43.478 0.00 0.00 29.46 3.66
5464 5834 3.254166 GGCAACATGAACTGATGAACACT 59.746 43.478 0.00 0.00 29.46 3.55
5465 5835 3.004629 TGGCAACATGAACTGATGAACAC 59.995 43.478 0.00 0.00 46.17 3.32
5466 5836 3.220940 TGGCAACATGAACTGATGAACA 58.779 40.909 0.00 0.00 46.17 3.18
5467 5837 3.921119 TGGCAACATGAACTGATGAAC 57.079 42.857 0.00 0.00 46.17 3.18
5484 5854 0.520404 CAGTGACAGATGCAGTTGGC 59.480 55.000 0.00 0.00 45.13 4.52
5485 5855 2.074576 CTCAGTGACAGATGCAGTTGG 58.925 52.381 0.00 0.00 0.00 3.77
5486 5856 2.763933 ACTCAGTGACAGATGCAGTTG 58.236 47.619 0.00 0.00 0.00 3.16
5487 5857 3.482156 AACTCAGTGACAGATGCAGTT 57.518 42.857 0.00 0.00 0.00 3.16
5488 5858 3.482156 AAACTCAGTGACAGATGCAGT 57.518 42.857 0.00 0.00 0.00 4.40
5489 5859 4.564041 ACTAAACTCAGTGACAGATGCAG 58.436 43.478 0.00 0.00 0.00 4.41
5490 5860 4.607293 ACTAAACTCAGTGACAGATGCA 57.393 40.909 0.00 0.00 0.00 3.96
5499 5869 2.072298 GCTGCTCCACTAAACTCAGTG 58.928 52.381 0.00 0.00 44.60 3.66
5500 5870 1.974236 AGCTGCTCCACTAAACTCAGT 59.026 47.619 0.00 0.00 0.00 3.41
5501 5871 2.028658 TCAGCTGCTCCACTAAACTCAG 60.029 50.000 9.47 0.00 0.00 3.35
5502 5872 1.970640 TCAGCTGCTCCACTAAACTCA 59.029 47.619 9.47 0.00 0.00 3.41
5503 5873 2.232452 TCTCAGCTGCTCCACTAAACTC 59.768 50.000 9.47 0.00 0.00 3.01
5504 5874 2.251818 TCTCAGCTGCTCCACTAAACT 58.748 47.619 9.47 0.00 0.00 2.66
5505 5875 2.751166 TCTCAGCTGCTCCACTAAAC 57.249 50.000 9.47 0.00 0.00 2.01
5506 5876 3.769739 TTTCTCAGCTGCTCCACTAAA 57.230 42.857 9.47 0.00 0.00 1.85
5527 5897 0.111061 TGTTCATGCAGGTCTGGCTT 59.889 50.000 0.00 0.00 0.00 4.35
5531 5901 1.162698 CCAGTGTTCATGCAGGTCTG 58.837 55.000 0.00 3.79 0.00 3.51
5532 5902 0.037303 CCCAGTGTTCATGCAGGTCT 59.963 55.000 0.00 0.00 0.00 3.85
5533 5903 0.036732 TCCCAGTGTTCATGCAGGTC 59.963 55.000 0.00 0.00 0.00 3.85
5534 5904 0.037303 CTCCCAGTGTTCATGCAGGT 59.963 55.000 0.00 0.00 0.00 4.00
5535 5905 0.679002 CCTCCCAGTGTTCATGCAGG 60.679 60.000 0.00 0.00 0.00 4.85
5558 6021 5.296035 CCTGGTAGGATCGTAACATTTTTCC 59.704 44.000 13.27 1.26 37.67 3.13
5559 6022 6.110707 TCCTGGTAGGATCGTAACATTTTTC 58.889 40.000 13.27 0.00 40.06 2.29
5560 6023 6.057321 TCCTGGTAGGATCGTAACATTTTT 57.943 37.500 13.27 0.00 40.06 1.94
5561 6024 5.424252 TCTCCTGGTAGGATCGTAACATTTT 59.576 40.000 13.27 0.00 44.81 1.82
5562 6025 4.960469 TCTCCTGGTAGGATCGTAACATTT 59.040 41.667 13.27 0.00 44.81 2.32
5564 6027 4.180377 TCTCCTGGTAGGATCGTAACAT 57.820 45.455 13.27 0.00 44.81 2.71
5566 6029 4.583489 TGAATCTCCTGGTAGGATCGTAAC 59.417 45.833 3.46 3.46 44.81 2.50
5567 6030 4.800023 TGAATCTCCTGGTAGGATCGTAA 58.200 43.478 0.00 0.00 44.81 3.18
5568 6031 4.104261 TCTGAATCTCCTGGTAGGATCGTA 59.896 45.833 0.00 0.00 44.81 3.43
5569 6032 3.117474 TCTGAATCTCCTGGTAGGATCGT 60.117 47.826 0.00 0.00 44.81 3.73
5570 6033 3.491342 TCTGAATCTCCTGGTAGGATCG 58.509 50.000 0.00 0.00 44.81 3.69
5571 6034 4.735369 TCTCTGAATCTCCTGGTAGGATC 58.265 47.826 0.00 0.00 44.81 3.36
5615 6078 6.528423 CGGCTCTACTGCTTACAATATGTATC 59.472 42.308 0.00 0.00 32.20 2.24
5616 6079 6.015350 ACGGCTCTACTGCTTACAATATGTAT 60.015 38.462 0.00 0.00 32.20 2.29
5617 6080 5.301045 ACGGCTCTACTGCTTACAATATGTA 59.699 40.000 0.00 0.00 0.00 2.29
5618 6081 4.099573 ACGGCTCTACTGCTTACAATATGT 59.900 41.667 0.00 0.00 0.00 2.29
5619 6082 4.621991 ACGGCTCTACTGCTTACAATATG 58.378 43.478 0.00 0.00 0.00 1.78
5620 6083 4.939052 ACGGCTCTACTGCTTACAATAT 57.061 40.909 0.00 0.00 0.00 1.28
5621 6084 5.128205 TCTACGGCTCTACTGCTTACAATA 58.872 41.667 0.00 0.00 0.00 1.90
5622 6085 3.952323 TCTACGGCTCTACTGCTTACAAT 59.048 43.478 0.00 0.00 0.00 2.71
5623 6086 3.349927 TCTACGGCTCTACTGCTTACAA 58.650 45.455 0.00 0.00 0.00 2.41
5624 6087 2.943690 CTCTACGGCTCTACTGCTTACA 59.056 50.000 0.00 0.00 0.00 2.41
5625 6088 2.291190 CCTCTACGGCTCTACTGCTTAC 59.709 54.545 0.00 0.00 0.00 2.34
5626 6089 2.172082 TCCTCTACGGCTCTACTGCTTA 59.828 50.000 0.00 0.00 0.00 3.09
5640 6136 2.424246 CTGTCCCGTTCTCTTCCTCTAC 59.576 54.545 0.00 0.00 0.00 2.59
5654 6150 2.581354 CAGCTTCCTCCTGTCCCG 59.419 66.667 0.00 0.00 0.00 5.14
5656 6152 1.078567 CAGCAGCTTCCTCCTGTCC 60.079 63.158 0.00 0.00 32.93 4.02
5671 6167 1.329913 ATTTCCCGGCATTTCCCAGC 61.330 55.000 0.00 0.00 0.00 4.85
5673 6169 0.975040 CCATTTCCCGGCATTTCCCA 60.975 55.000 0.00 0.00 0.00 4.37
5674 6170 0.686112 TCCATTTCCCGGCATTTCCC 60.686 55.000 0.00 0.00 0.00 3.97
5675 6171 1.069049 CATCCATTTCCCGGCATTTCC 59.931 52.381 0.00 0.00 0.00 3.13
5676 6172 2.031120 TCATCCATTTCCCGGCATTTC 58.969 47.619 0.00 0.00 0.00 2.17
5677 6173 2.157640 TCATCCATTTCCCGGCATTT 57.842 45.000 0.00 0.00 0.00 2.32
5687 6219 2.885554 GCTGTCCCCAGTTCATCCATTT 60.886 50.000 0.00 0.00 41.02 2.32
5689 6221 0.257039 GCTGTCCCCAGTTCATCCAT 59.743 55.000 0.00 0.00 41.02 3.41
5694 6226 1.228245 GCAAGCTGTCCCCAGTTCA 60.228 57.895 0.00 0.00 41.02 3.18
5725 6268 0.625316 ATGCTGATAGTGGGCCACAA 59.375 50.000 36.28 18.43 36.74 3.33
5726 6269 0.625316 AATGCTGATAGTGGGCCACA 59.375 50.000 36.28 22.90 36.74 4.17
5748 6291 0.957888 TGCGTCGGCATTGAATGGAA 60.958 50.000 7.35 0.00 46.21 3.53
5762 6305 2.537560 CCCTTCCATGCGATGCGTC 61.538 63.158 0.00 0.00 0.00 5.19
5763 6306 2.514592 CCCTTCCATGCGATGCGT 60.515 61.111 0.00 0.00 0.00 5.24
5764 6307 3.282157 CCCCTTCCATGCGATGCG 61.282 66.667 0.00 0.00 0.00 4.73
5765 6308 3.599704 GCCCCTTCCATGCGATGC 61.600 66.667 0.00 0.00 0.00 3.91
5766 6309 2.191513 CAGCCCCTTCCATGCGATG 61.192 63.158 0.00 0.00 0.00 3.84
5767 6310 2.194056 CAGCCCCTTCCATGCGAT 59.806 61.111 0.00 0.00 0.00 4.58
5768 6311 4.113815 CCAGCCCCTTCCATGCGA 62.114 66.667 0.00 0.00 0.00 5.10
5769 6312 4.431131 ACCAGCCCCTTCCATGCG 62.431 66.667 0.00 0.00 0.00 4.73
5770 6313 2.757099 CACCAGCCCCTTCCATGC 60.757 66.667 0.00 0.00 0.00 4.06
5771 6314 2.043652 CCACCAGCCCCTTCCATG 60.044 66.667 0.00 0.00 0.00 3.66
5772 6315 2.535317 ACCACCAGCCCCTTCCAT 60.535 61.111 0.00 0.00 0.00 3.41
5773 6316 3.256960 GACCACCAGCCCCTTCCA 61.257 66.667 0.00 0.00 0.00 3.53
5774 6317 2.936032 AGACCACCAGCCCCTTCC 60.936 66.667 0.00 0.00 0.00 3.46
5775 6318 2.671682 GAGACCACCAGCCCCTTC 59.328 66.667 0.00 0.00 0.00 3.46
5776 6319 2.936032 GGAGACCACCAGCCCCTT 60.936 66.667 0.00 0.00 0.00 3.95
5867 6414 4.330074 ACTGACGAAACTGAAGAAACTGTG 59.670 41.667 0.00 0.00 0.00 3.66
5905 6452 2.842208 ACGAGAAGAAGATGAGAGCG 57.158 50.000 0.00 0.00 0.00 5.03
5993 6544 1.091537 GAGTAGCTCTCTGTGACGCT 58.908 55.000 0.00 8.13 39.86 5.07
5994 6545 3.615099 GAGTAGCTCTCTGTGACGC 57.385 57.895 0.00 0.00 39.86 5.19
6004 6555 2.350964 GCAGGCGTATGTAGAGTAGCTC 60.351 54.545 0.00 0.00 0.00 4.09
6013 6564 3.366985 CCTGAATATCGCAGGCGTATGTA 60.367 47.826 13.83 3.86 45.66 2.29
6014 6565 2.610479 CCTGAATATCGCAGGCGTATGT 60.610 50.000 13.83 2.08 45.66 2.29
6015 6566 1.995484 CCTGAATATCGCAGGCGTATG 59.005 52.381 13.83 0.86 45.66 2.39
6016 6567 2.370281 CCTGAATATCGCAGGCGTAT 57.630 50.000 13.83 8.02 45.66 3.06
6017 6568 3.886044 CCTGAATATCGCAGGCGTA 57.114 52.632 13.83 6.06 45.66 4.42
6018 6569 4.758692 CCTGAATATCGCAGGCGT 57.241 55.556 13.83 3.96 45.66 5.68
6022 6573 1.932604 GCCGAGTCCTGAATATCGCAG 60.933 57.143 0.00 0.00 33.94 5.18
6023 6574 0.032130 GCCGAGTCCTGAATATCGCA 59.968 55.000 0.00 0.00 33.94 5.10
6024 6575 1.004277 CGCCGAGTCCTGAATATCGC 61.004 60.000 0.00 0.00 33.94 4.58
6025 6576 0.311165 ACGCCGAGTCCTGAATATCG 59.689 55.000 0.00 0.00 35.02 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.