Multiple sequence alignment - TraesCS3B01G439000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G439000 chr3B 100.000 4877 0 0 1 4877 678144912 678149788 0.000000e+00 9007.0
1 TraesCS3B01G439000 chr3B 94.062 421 21 4 4458 4877 622520715 622520298 1.910000e-178 636.0
2 TraesCS3B01G439000 chr3B 85.103 584 63 15 2371 2936 16835061 16834484 4.230000e-160 575.0
3 TraesCS3B01G439000 chr3B 83.161 386 43 5 1951 2334 16835667 16835302 2.810000e-87 333.0
4 TraesCS3B01G439000 chr3B 85.374 294 39 4 4166 4458 797635707 797635997 7.930000e-78 302.0
5 TraesCS3B01G439000 chr3B 84.694 294 37 8 4167 4457 528138776 528138488 2.220000e-73 287.0
6 TraesCS3B01G439000 chr3B 93.443 122 7 1 4016 4136 678169868 678169989 3.880000e-41 180.0
7 TraesCS3B01G439000 chr3D 95.788 1377 45 7 2649 4015 515666860 515668233 0.000000e+00 2209.0
8 TraesCS3B01G439000 chr3D 88.571 420 15 15 712 1130 515666090 515666477 3.410000e-131 479.0
9 TraesCS3B01G439000 chr3D 97.159 176 5 0 2516 2691 515666684 515666859 1.030000e-76 298.0
10 TraesCS3B01G439000 chr3D 96.273 161 6 0 2357 2517 515666473 515666633 1.040000e-66 265.0
11 TraesCS3B01G439000 chr3D 94.262 122 6 1 4016 4136 515674979 515675100 8.340000e-43 185.0
12 TraesCS3B01G439000 chr3D 92.982 114 5 3 4044 4156 515668228 515668339 3.910000e-36 163.0
13 TraesCS3B01G439000 chr3D 87.805 82 10 0 530 611 8990608 8990689 4.020000e-16 97.1
14 TraesCS3B01G439000 chr3D 78.125 160 26 7 486 644 603377 603528 5.200000e-15 93.5
15 TraesCS3B01G439000 chr3D 83.333 102 9 6 543 643 582249247 582249153 2.420000e-13 87.9
16 TraesCS3B01G439000 chr3D 88.889 54 4 2 654 705 4307162 4307109 1.130000e-06 65.8
17 TraesCS3B01G439000 chr3D 94.595 37 2 0 124 160 18878817 18878781 1.900000e-04 58.4
18 TraesCS3B01G439000 chr3A 94.706 1190 51 6 2979 4156 649853803 649854992 0.000000e+00 1838.0
19 TraesCS3B01G439000 chr3A 91.742 1211 55 22 712 1897 649850764 649851954 0.000000e+00 1640.0
20 TraesCS3B01G439000 chr3A 95.037 544 27 0 1974 2517 649852356 649852899 0.000000e+00 856.0
21 TraesCS3B01G439000 chr3A 94.583 480 21 5 2516 2993 649852950 649853426 0.000000e+00 737.0
22 TraesCS3B01G439000 chr3A 82.775 418 39 8 4 417 649847515 649847903 4.670000e-90 342.0
23 TraesCS3B01G439000 chr3A 93.443 122 7 1 4016 4136 649937901 649938022 3.880000e-41 180.0
24 TraesCS3B01G439000 chr3A 82.787 122 17 3 523 643 573402173 573402291 6.680000e-19 106.0
25 TraesCS3B01G439000 chr3A 97.778 45 1 0 656 700 741898161 741898117 1.460000e-10 78.7
26 TraesCS3B01G439000 chr6B 96.875 416 11 2 4463 4877 654912889 654913303 0.000000e+00 695.0
27 TraesCS3B01G439000 chr5B 95.122 410 16 4 4459 4867 475096025 475095619 1.140000e-180 643.0
28 TraesCS3B01G439000 chr2B 94.131 426 17 7 4454 4877 617339278 617339697 4.120000e-180 641.0
29 TraesCS3B01G439000 chr2B 94.878 410 17 4 4459 4867 163797054 163796648 5.320000e-179 638.0
30 TraesCS3B01G439000 chr2B 85.088 114 14 2 530 643 780033576 780033686 3.990000e-21 113.0
31 TraesCS3B01G439000 chr1B 94.062 421 21 4 4458 4877 207278246 207277829 1.910000e-178 636.0
32 TraesCS3B01G439000 chr1B 94.062 421 21 4 4458 4877 207302245 207301828 1.910000e-178 636.0
33 TraesCS3B01G439000 chr1B 94.062 421 21 4 4458 4877 207310115 207309698 1.910000e-178 636.0
34 TraesCS3B01G439000 chr1B 94.048 420 21 4 4459 4877 207311791 207311375 6.890000e-178 634.0
35 TraesCS3B01G439000 chr1B 85.666 293 37 5 4167 4457 626603931 626603642 2.210000e-78 303.0
36 TraesCS3B01G439000 chr1B 84.167 120 15 3 525 643 274083205 274083321 3.990000e-21 113.0
37 TraesCS3B01G439000 chr1B 84.211 114 15 2 530 643 352637639 352637749 1.860000e-19 108.0
38 TraesCS3B01G439000 chr1B 94.000 50 2 1 652 700 374342070 374342021 1.880000e-09 75.0
39 TraesCS3B01G439000 chr2A 89.123 285 28 3 3099 3382 250830456 250830174 7.770000e-93 351.0
40 TraesCS3B01G439000 chr2A 85.305 279 39 2 2666 2944 250830838 250830562 2.220000e-73 287.0
41 TraesCS3B01G439000 chr2A 80.405 148 23 5 498 643 86845065 86845208 1.860000e-19 108.0
42 TraesCS3B01G439000 chr2D 85.714 294 38 3 4166 4458 344994302 344994592 1.710000e-79 307.0
43 TraesCS3B01G439000 chr2D 85.217 115 14 2 530 644 114726194 114726305 1.110000e-21 115.0
44 TraesCS3B01G439000 chr2D 93.617 47 3 0 654 700 333646072 333646118 2.440000e-08 71.3
45 TraesCS3B01G439000 chr2D 97.059 34 1 0 127 160 523633291 523633258 1.900000e-04 58.4
46 TraesCS3B01G439000 chr4D 85.666 293 38 3 4167 4458 468858751 468858462 6.130000e-79 305.0
47 TraesCS3B01G439000 chr4D 97.872 47 1 0 654 700 9744832 9744786 1.130000e-11 82.4
48 TraesCS3B01G439000 chr4D 95.556 45 2 0 656 700 415143396 415143440 6.770000e-09 73.1
49 TraesCS3B01G439000 chr4D 88.889 54 4 2 654 705 1403129 1403076 1.130000e-06 65.8
50 TraesCS3B01G439000 chr4D 91.489 47 4 0 655 701 8137729 8137683 1.130000e-06 65.8
51 TraesCS3B01G439000 chr4D 97.059 34 1 0 127 160 39411328 39411361 1.900000e-04 58.4
52 TraesCS3B01G439000 chr4D 97.059 34 1 0 127 160 79220852 79220819 1.900000e-04 58.4
53 TraesCS3B01G439000 chr5D 85.714 294 35 5 4167 4458 494755986 494755698 2.210000e-78 303.0
54 TraesCS3B01G439000 chr5D 85.374 294 38 4 4167 4458 543309450 543309160 2.850000e-77 300.0
55 TraesCS3B01G439000 chr5D 83.417 199 31 2 2231 2429 115925021 115924825 3.000000e-42 183.0
56 TraesCS3B01G439000 chr5D 87.931 116 13 1 3801 3916 115925014 115925128 8.510000e-28 135.0
57 TraesCS3B01G439000 chr5D 82.394 142 17 5 502 643 437799935 437799802 3.080000e-22 117.0
58 TraesCS3B01G439000 chr5D 86.813 91 11 1 522 611 506289294 506289384 3.110000e-17 100.0
59 TraesCS3B01G439000 chr5D 83.168 101 16 1 530 629 502855599 502855699 1.870000e-14 91.6
60 TraesCS3B01G439000 chr5D 88.679 53 4 2 655 705 361510353 361510301 4.080000e-06 63.9
61 TraesCS3B01G439000 chr5D 88.679 53 4 2 655 705 464292748 464292800 4.080000e-06 63.9
62 TraesCS3B01G439000 chr5D 97.059 34 1 0 127 160 441256328 441256361 1.900000e-04 58.4
63 TraesCS3B01G439000 chr5D 96.970 33 1 0 127 159 502597409 502597441 6.820000e-04 56.5
64 TraesCS3B01G439000 chr1D 84.746 295 41 3 4166 4458 283080140 283079848 4.770000e-75 292.0
65 TraesCS3B01G439000 chr1D 83.333 90 14 1 522 611 319531172 319531260 1.130000e-11 82.4
66 TraesCS3B01G439000 chr1D 82.222 90 15 1 522 611 494867314 494867226 5.230000e-10 76.8
67 TraesCS3B01G439000 chr1D 90.741 54 3 2 654 705 326014867 326014920 2.440000e-08 71.3
68 TraesCS3B01G439000 chr1D 91.111 45 4 0 654 698 55459340 55459296 1.470000e-05 62.1
69 TraesCS3B01G439000 chr1D 91.111 45 4 0 654 698 279325205 279325161 1.470000e-05 62.1
70 TraesCS3B01G439000 chr1D 91.304 46 3 1 655 699 343266001 343266046 1.470000e-05 62.1
71 TraesCS3B01G439000 chr1D 100.000 28 0 0 132 159 7289643 7289616 9.000000e-03 52.8
72 TraesCS3B01G439000 chr7A 84.000 300 43 5 4159 4457 278998400 278998105 2.870000e-72 283.0
73 TraesCS3B01G439000 chr7A 90.000 90 9 0 522 611 31002724 31002813 3.080000e-22 117.0
74 TraesCS3B01G439000 chr7A 90.000 90 9 0 522 611 299536147 299536058 3.080000e-22 117.0
75 TraesCS3B01G439000 chr7A 94.444 36 2 0 128 163 691416727 691416762 6.820000e-04 56.5
76 TraesCS3B01G439000 chr6A 90.000 90 9 0 522 611 389564056 389563967 3.080000e-22 117.0
77 TraesCS3B01G439000 chr6A 79.730 148 22 6 498 643 120131363 120131504 3.110000e-17 100.0
78 TraesCS3B01G439000 chr6A 95.556 45 2 0 656 700 489222895 489222851 6.770000e-09 73.1
79 TraesCS3B01G439000 chr6A 81.111 90 10 5 3012 3100 484563354 484563271 1.130000e-06 65.8
80 TraesCS3B01G439000 chr7D 91.566 83 6 1 530 611 495307547 495307629 3.990000e-21 113.0
81 TraesCS3B01G439000 chr7D 88.889 54 4 2 654 705 119960620 119960567 1.130000e-06 65.8
82 TraesCS3B01G439000 chr7D 97.059 34 1 0 127 160 109304301 109304334 1.900000e-04 58.4
83 TraesCS3B01G439000 chr7D 96.970 33 1 0 127 159 268555553 268555521 6.820000e-04 56.5
84 TraesCS3B01G439000 chr4A 88.506 87 10 0 534 620 546956030 546956116 6.680000e-19 106.0
85 TraesCS3B01G439000 chr7B 81.890 127 17 5 523 646 614290446 614290323 8.640000e-18 102.0
86 TraesCS3B01G439000 chr7B 98.039 51 0 1 656 705 594029895 594029945 2.420000e-13 87.9
87 TraesCS3B01G439000 chr7B 94.118 51 2 1 656 705 85812953 85812903 5.230000e-10 76.8
88 TraesCS3B01G439000 chr7B 94.118 51 2 1 656 705 362058650 362058600 5.230000e-10 76.8
89 TraesCS3B01G439000 chr6D 83.929 112 12 4 531 642 57999673 57999778 8.640000e-18 102.0
90 TraesCS3B01G439000 chr6D 80.488 123 17 6 522 643 456085868 456085984 2.420000e-13 87.9
91 TraesCS3B01G439000 chr6D 85.366 82 11 1 530 611 268979289 268979369 3.130000e-12 84.2
92 TraesCS3B01G439000 chr6D 85.366 82 11 1 530 611 454249029 454249109 3.130000e-12 84.2
93 TraesCS3B01G439000 chr6D 95.745 47 2 0 654 700 307327612 307327658 5.230000e-10 76.8
94 TraesCS3B01G439000 chr6D 97.368 38 1 0 656 693 137255561 137255524 1.130000e-06 65.8
95 TraesCS3B01G439000 chr6D 97.368 38 1 0 656 693 184831608 184831571 1.130000e-06 65.8
96 TraesCS3B01G439000 chr6D 97.368 38 1 0 656 693 193906259 193906296 1.130000e-06 65.8
97 TraesCS3B01G439000 chr6D 97.368 38 1 0 656 693 340544818 340544781 1.130000e-06 65.8
98 TraesCS3B01G439000 chr6D 91.111 45 4 0 654 698 348141778 348141822 1.470000e-05 62.1
99 TraesCS3B01G439000 chr5A 83.333 114 16 2 530 643 657214414 657214524 8.640000e-18 102.0
100 TraesCS3B01G439000 chr4B 83.333 114 15 3 530 643 393413602 393413711 8.640000e-18 102.0
101 TraesCS3B01G439000 chr4B 94.118 51 2 1 651 700 187738684 187738634 5.230000e-10 76.8
102 TraesCS3B01G439000 chr4B 97.059 34 1 0 127 160 110712039 110712006 1.900000e-04 58.4
103 TraesCS3B01G439000 chr4B 97.059 34 1 0 127 160 600423616 600423649 1.900000e-04 58.4
104 TraesCS3B01G439000 chr1A 84.158 101 15 1 530 629 527886610 527886510 4.020000e-16 97.1
105 TraesCS3B01G439000 chr1A 96.226 53 1 1 654 705 584805231 584805179 8.700000e-13 86.1
106 TraesCS3B01G439000 chrUn 100.000 45 0 0 656 700 1997119 1997163 3.130000e-12 84.2
107 TraesCS3B01G439000 chrUn 89.286 56 4 2 646 700 48888720 48888666 8.760000e-08 69.4
108 TraesCS3B01G439000 chrUn 97.368 38 1 0 656 693 27856364 27856401 1.130000e-06 65.8
109 TraesCS3B01G439000 chrUn 97.368 38 1 0 656 693 91749419 91749382 1.130000e-06 65.8
110 TraesCS3B01G439000 chrUn 97.059 34 1 0 127 160 30022361 30022394 1.900000e-04 58.4
111 TraesCS3B01G439000 chrUn 100.000 28 0 0 654 681 265076017 265075990 9.000000e-03 52.8
112 TraesCS3B01G439000 chrUn 100.000 28 0 0 655 682 272136020 272135993 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G439000 chr3B 678144912 678149788 4876 False 9007.0 9007 100.0000 1 4877 1 chr3B.!!$F1 4876
1 TraesCS3B01G439000 chr3B 16834484 16835667 1183 True 454.0 575 84.1320 1951 2936 2 chr3B.!!$R3 985
2 TraesCS3B01G439000 chr3D 515666090 515668339 2249 False 682.8 2209 94.1546 712 4156 5 chr3D.!!$F4 3444
3 TraesCS3B01G439000 chr3A 649847515 649854992 7477 False 1082.6 1838 91.7686 4 4156 5 chr3A.!!$F3 4152
4 TraesCS3B01G439000 chr1B 207309698 207311791 2093 True 635.0 636 94.0550 4458 4877 2 chr1B.!!$R5 419
5 TraesCS3B01G439000 chr2A 250830174 250830838 664 True 319.0 351 87.2140 2666 3382 2 chr2A.!!$R1 716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.033920 CCTAGCTACATGATGCGCCA 59.966 55.000 4.18 0.0 0.00 5.69 F
437 442 0.176680 ATCACTAGCGGCCAGTTCAG 59.823 55.000 2.24 0.0 0.00 3.02 F
488 493 0.232303 GTGTCGTTCTGCCAAAGTCG 59.768 55.000 0.00 0.0 0.00 4.18 F
1686 4303 0.308993 GGCGCATGATAGCAAAGACC 59.691 55.000 10.83 0.0 34.54 3.85 F
1687 4304 1.016627 GCGCATGATAGCAAAGACCA 58.983 50.000 0.30 0.0 0.00 4.02 F
1706 4323 2.012673 CATTGGACTGCAGAACTAGCC 58.987 52.381 23.35 11.5 0.00 3.93 F
1866 4484 2.307098 GCCTATGCAGGATTGGAGGTAT 59.693 50.000 6.58 0.0 45.91 2.73 F
1910 4633 2.567615 TCCTCTACCTTCTTGTCAAGGC 59.432 50.000 12.66 0.0 46.34 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1312 3916 0.254462 CTTCCCCTTCTTCTCCTGGC 59.746 60.000 0.00 0.00 0.00 4.85 R
1661 4278 0.463620 TGCTATCATGCGCCACTACA 59.536 50.000 4.18 0.00 35.36 2.74 R
1689 4306 1.279496 ATGGCTAGTTCTGCAGTCCA 58.721 50.000 14.67 12.26 0.00 4.02 R
3529 7190 0.111253 AGCTGGTTGTTTCCTCCCAG 59.889 55.000 0.00 0.00 45.87 4.45 R
3609 7270 5.957796 CGACAAAAGCTTAATTACCTTAGCG 59.042 40.000 0.00 0.00 0.00 4.26 R
3719 7383 1.880027 AGCATCCTGGAAAACAACGAC 59.120 47.619 0.00 0.00 0.00 4.34 R
3722 7386 4.846779 TTACAGCATCCTGGAAAACAAC 57.153 40.909 0.00 0.00 38.95 3.32 R
4002 7668 1.892468 CGTGTCGACTACTGGTAAGC 58.108 55.000 17.92 0.00 0.00 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.464452 AGCCCTACTTTCGCGCTTAT 59.536 50.000 5.56 0.00 0.00 1.73
28 29 2.284417 CCCTACTTTCGCGCTTATGAAC 59.716 50.000 5.56 0.00 0.00 3.18
31 32 2.268298 ACTTTCGCGCTTATGAACGAT 58.732 42.857 5.56 0.00 34.07 3.73
35 36 0.435008 CGCGCTTATGAACGATAGCC 59.565 55.000 5.56 0.00 42.67 3.93
36 37 1.784525 GCGCTTATGAACGATAGCCT 58.215 50.000 0.00 0.00 42.67 4.58
55 56 5.018809 AGCCTCAAATTGCAAAATCTCCTA 58.981 37.500 1.71 0.00 0.00 2.94
71 72 0.033920 CCTAGCTACATGATGCGCCA 59.966 55.000 4.18 0.00 0.00 5.69
79 80 2.487934 ACATGATGCGCCATCTAGAAC 58.512 47.619 4.18 0.00 41.06 3.01
90 91 4.129380 GCCATCTAGAACACACATGCATA 58.871 43.478 0.00 0.00 0.00 3.14
122 123 7.813852 ATTTAGTTGTAGAGCTGTTCGTTAG 57.186 36.000 0.00 0.00 0.00 2.34
147 148 3.581332 ACTCCCTCCGAAAATACTTGTCA 59.419 43.478 0.00 0.00 0.00 3.58
219 220 9.739276 AATGGAGAGAGTAACAATGATTTTACA 57.261 29.630 10.56 0.00 31.66 2.41
257 258 4.606961 AGCACCGTTTCACATTTTTAGTG 58.393 39.130 0.00 0.00 38.32 2.74
260 261 5.040635 CACCGTTTCACATTTTTAGTGCTT 58.959 37.500 0.00 0.00 36.93 3.91
272 273 2.605837 TAGTGCTTTGTTGACACGGA 57.394 45.000 0.00 0.00 39.31 4.69
282 283 2.550606 TGTTGACACGGAAGGCATAAAC 59.449 45.455 0.00 0.00 0.00 2.01
283 284 2.550606 GTTGACACGGAAGGCATAAACA 59.449 45.455 0.00 0.00 0.00 2.83
294 295 4.749245 AGGCATAAACACAGAAAACTCG 57.251 40.909 0.00 0.00 0.00 4.18
298 299 5.049954 GGCATAAACACAGAAAACTCGTACA 60.050 40.000 0.00 0.00 0.00 2.90
302 306 9.279904 CATAAACACAGAAAACTCGTACAAAAA 57.720 29.630 0.00 0.00 0.00 1.94
312 316 5.277601 ACTCGTACAAAAATCATGTTCGG 57.722 39.130 5.99 1.13 40.52 4.30
318 322 5.371115 ACAAAAATCATGTTCGGTCGAAT 57.629 34.783 9.06 0.00 36.45 3.34
320 324 7.083875 ACAAAAATCATGTTCGGTCGAATAT 57.916 32.000 9.06 9.05 36.59 1.28
339 343 2.315386 GGGTGCTCACGAAACCGAC 61.315 63.158 0.00 0.00 34.62 4.79
351 356 2.921754 CGAAACCGACAGATCCAGTTAC 59.078 50.000 0.00 0.00 0.00 2.50
357 362 2.188817 GACAGATCCAGTTACCCAGGT 58.811 52.381 0.00 0.00 0.00 4.00
400 405 2.483877 TCGAGCGAGCATTTGTTTTCAT 59.516 40.909 0.00 0.00 0.00 2.57
405 410 3.163594 CGAGCATTTGTTTTCATCGGAC 58.836 45.455 0.00 0.00 0.00 4.79
417 422 5.957842 TTTCATCGGACAGCTTTACAAAT 57.042 34.783 0.00 0.00 0.00 2.32
418 423 7.041030 TGTTTTCATCGGACAGCTTTACAAATA 60.041 33.333 0.00 0.00 0.00 1.40
419 424 7.624360 TTTCATCGGACAGCTTTACAAATAT 57.376 32.000 0.00 0.00 0.00 1.28
420 425 6.844696 TCATCGGACAGCTTTACAAATATC 57.155 37.500 0.00 0.00 0.00 1.63
422 427 6.257849 TCATCGGACAGCTTTACAAATATCAC 59.742 38.462 0.00 0.00 0.00 3.06
423 428 5.730550 TCGGACAGCTTTACAAATATCACT 58.269 37.500 0.00 0.00 0.00 3.41
425 430 6.978659 TCGGACAGCTTTACAAATATCACTAG 59.021 38.462 0.00 0.00 0.00 2.57
426 431 6.292381 CGGACAGCTTTACAAATATCACTAGC 60.292 42.308 0.00 0.00 0.00 3.42
427 432 6.292381 GGACAGCTTTACAAATATCACTAGCG 60.292 42.308 0.00 0.00 32.89 4.26
428 433 5.523916 ACAGCTTTACAAATATCACTAGCGG 59.476 40.000 0.00 0.00 32.89 5.52
429 434 4.511826 AGCTTTACAAATATCACTAGCGGC 59.488 41.667 0.00 0.00 32.89 6.53
432 437 2.838736 ACAAATATCACTAGCGGCCAG 58.161 47.619 2.24 0.00 0.00 4.85
433 438 2.170607 ACAAATATCACTAGCGGCCAGT 59.829 45.455 2.24 0.00 0.00 4.00
434 439 3.206150 CAAATATCACTAGCGGCCAGTT 58.794 45.455 2.24 0.00 0.00 3.16
436 441 1.480789 TATCACTAGCGGCCAGTTCA 58.519 50.000 2.24 0.00 0.00 3.18
437 442 0.176680 ATCACTAGCGGCCAGTTCAG 59.823 55.000 2.24 0.00 0.00 3.02
438 443 2.103042 CACTAGCGGCCAGTTCAGC 61.103 63.158 2.24 0.00 0.00 4.26
439 444 2.286523 ACTAGCGGCCAGTTCAGCT 61.287 57.895 2.24 4.42 43.07 4.24
440 445 1.812922 CTAGCGGCCAGTTCAGCTG 60.813 63.158 7.63 7.63 44.63 4.24
451 456 4.092771 CAGTTCAGCTGGATTGTCATTG 57.907 45.455 15.13 0.00 41.42 2.82
452 457 3.087031 AGTTCAGCTGGATTGTCATTGG 58.913 45.455 15.13 0.00 0.00 3.16
453 458 3.084039 GTTCAGCTGGATTGTCATTGGA 58.916 45.455 15.13 0.00 0.00 3.53
454 459 3.657398 TCAGCTGGATTGTCATTGGAT 57.343 42.857 15.13 0.00 0.00 3.41
457 462 5.698104 TCAGCTGGATTGTCATTGGATTAT 58.302 37.500 15.13 0.00 0.00 1.28
458 463 5.766670 TCAGCTGGATTGTCATTGGATTATC 59.233 40.000 15.13 0.00 0.00 1.75
459 464 5.768662 CAGCTGGATTGTCATTGGATTATCT 59.231 40.000 5.57 0.00 0.00 1.98
460 465 6.938596 CAGCTGGATTGTCATTGGATTATCTA 59.061 38.462 5.57 0.00 0.00 1.98
461 466 7.610692 CAGCTGGATTGTCATTGGATTATCTAT 59.389 37.037 5.57 0.00 0.00 1.98
462 467 7.828223 AGCTGGATTGTCATTGGATTATCTATC 59.172 37.037 0.00 0.00 0.00 2.08
463 468 7.201591 GCTGGATTGTCATTGGATTATCTATCG 60.202 40.741 0.00 0.00 33.82 2.92
464 469 7.679783 TGGATTGTCATTGGATTATCTATCGT 58.320 34.615 0.00 0.00 33.82 3.73
465 470 7.603784 TGGATTGTCATTGGATTATCTATCGTG 59.396 37.037 0.00 0.00 33.82 4.35
466 471 6.785488 TTGTCATTGGATTATCTATCGTGC 57.215 37.500 0.00 0.00 33.82 5.34
467 472 5.852827 TGTCATTGGATTATCTATCGTGCA 58.147 37.500 0.00 0.00 33.82 4.57
468 473 6.466812 TGTCATTGGATTATCTATCGTGCAT 58.533 36.000 0.00 0.00 33.82 3.96
469 474 6.369615 TGTCATTGGATTATCTATCGTGCATG 59.630 38.462 0.00 0.00 33.82 4.06
470 475 6.369890 GTCATTGGATTATCTATCGTGCATGT 59.630 38.462 5.68 0.00 33.82 3.21
471 476 6.369615 TCATTGGATTATCTATCGTGCATGTG 59.630 38.462 5.68 0.00 33.82 3.21
472 477 5.213891 TGGATTATCTATCGTGCATGTGT 57.786 39.130 5.68 0.00 33.82 3.72
473 478 5.230182 TGGATTATCTATCGTGCATGTGTC 58.770 41.667 5.68 0.00 33.82 3.67
474 479 4.324669 GGATTATCTATCGTGCATGTGTCG 59.675 45.833 5.68 0.00 33.82 4.35
475 480 2.871182 ATCTATCGTGCATGTGTCGT 57.129 45.000 5.68 0.00 0.00 4.34
476 481 2.647529 TCTATCGTGCATGTGTCGTT 57.352 45.000 5.68 0.00 0.00 3.85
477 482 2.526077 TCTATCGTGCATGTGTCGTTC 58.474 47.619 5.68 0.00 0.00 3.95
478 483 2.163613 TCTATCGTGCATGTGTCGTTCT 59.836 45.455 5.68 0.00 0.00 3.01
479 484 1.070821 ATCGTGCATGTGTCGTTCTG 58.929 50.000 5.68 0.00 0.00 3.02
480 485 1.154599 CGTGCATGTGTCGTTCTGC 60.155 57.895 0.00 0.00 35.21 4.26
481 486 1.207593 GTGCATGTGTCGTTCTGCC 59.792 57.895 0.00 0.00 33.70 4.85
485 490 1.664016 GCATGTGTCGTTCTGCCAAAG 60.664 52.381 0.00 0.00 0.00 2.77
486 491 1.603802 CATGTGTCGTTCTGCCAAAGT 59.396 47.619 0.00 0.00 0.00 2.66
487 492 1.295792 TGTGTCGTTCTGCCAAAGTC 58.704 50.000 0.00 0.00 0.00 3.01
488 493 0.232303 GTGTCGTTCTGCCAAAGTCG 59.768 55.000 0.00 0.00 0.00 4.18
490 495 0.507358 GTCGTTCTGCCAAAGTCGTC 59.493 55.000 0.00 0.00 0.00 4.20
491 496 0.599204 TCGTTCTGCCAAAGTCGTCC 60.599 55.000 0.00 0.00 0.00 4.79
492 497 0.878523 CGTTCTGCCAAAGTCGTCCA 60.879 55.000 0.00 0.00 0.00 4.02
493 498 1.523758 GTTCTGCCAAAGTCGTCCAT 58.476 50.000 0.00 0.00 0.00 3.41
494 499 1.197721 GTTCTGCCAAAGTCGTCCATG 59.802 52.381 0.00 0.00 0.00 3.66
495 500 0.684535 TCTGCCAAAGTCGTCCATGA 59.315 50.000 0.00 0.00 0.00 3.07
497 502 1.466167 CTGCCAAAGTCGTCCATGAAG 59.534 52.381 0.00 0.00 0.00 3.02
499 504 2.037902 TGCCAAAGTCGTCCATGAAGTA 59.962 45.455 0.00 0.00 0.00 2.24
500 505 3.270877 GCCAAAGTCGTCCATGAAGTAT 58.729 45.455 0.00 0.00 0.00 2.12
501 506 3.689649 GCCAAAGTCGTCCATGAAGTATT 59.310 43.478 0.00 0.00 0.00 1.89
503 508 4.332819 CCAAAGTCGTCCATGAAGTATTCC 59.667 45.833 0.00 0.00 46.93 3.01
504 509 3.821421 AGTCGTCCATGAAGTATTCCC 57.179 47.619 0.00 0.00 46.93 3.97
505 510 3.375699 AGTCGTCCATGAAGTATTCCCT 58.624 45.455 0.00 0.00 46.93 4.20
506 511 3.385111 AGTCGTCCATGAAGTATTCCCTC 59.615 47.826 0.00 0.00 46.93 4.30
507 512 2.698797 TCGTCCATGAAGTATTCCCTCC 59.301 50.000 0.00 0.00 46.93 4.30
508 513 2.545952 CGTCCATGAAGTATTCCCTCCG 60.546 54.545 0.00 0.00 46.93 4.63
510 515 3.112263 TCCATGAAGTATTCCCTCCGTT 58.888 45.455 0.00 0.00 46.93 4.44
512 517 4.018779 TCCATGAAGTATTCCCTCCGTTTT 60.019 41.667 0.00 0.00 46.93 2.43
513 518 4.335594 CCATGAAGTATTCCCTCCGTTTTC 59.664 45.833 0.00 0.00 46.93 2.29
514 519 4.627284 TGAAGTATTCCCTCCGTTTTCA 57.373 40.909 0.00 0.00 46.93 2.69
515 520 4.975631 TGAAGTATTCCCTCCGTTTTCAA 58.024 39.130 0.00 0.00 46.93 2.69
516 521 5.378332 TGAAGTATTCCCTCCGTTTTCAAA 58.622 37.500 0.00 0.00 46.93 2.69
519 524 6.997239 AGTATTCCCTCCGTTTTCAAATAC 57.003 37.500 0.00 0.00 0.00 1.89
520 525 6.718294 AGTATTCCCTCCGTTTTCAAATACT 58.282 36.000 0.00 0.00 35.00 2.12
521 526 7.173032 AGTATTCCCTCCGTTTTCAAATACTT 58.827 34.615 0.00 0.00 35.85 2.24
526 531 9.689501 TTCCCTCCGTTTTCAAATACTTATAAT 57.310 29.630 0.00 0.00 0.00 1.28
527 532 9.689501 TCCCTCCGTTTTCAAATACTTATAATT 57.310 29.630 0.00 0.00 0.00 1.40
555 560 8.747538 TTTTAGAGATTTCAATAAGGGGCTAC 57.252 34.615 0.00 0.00 0.00 3.58
557 562 6.521527 AGAGATTTCAATAAGGGGCTACAT 57.478 37.500 0.00 0.00 0.00 2.29
559 564 8.224620 AGAGATTTCAATAAGGGGCTACATAT 57.775 34.615 0.00 0.00 0.00 1.78
560 565 8.105829 AGAGATTTCAATAAGGGGCTACATATG 58.894 37.037 0.00 0.00 0.00 1.78
561 566 7.988937 AGATTTCAATAAGGGGCTACATATGA 58.011 34.615 10.38 0.00 0.00 2.15
563 568 8.641498 ATTTCAATAAGGGGCTACATATGAAG 57.359 34.615 10.38 0.00 0.00 3.02
564 569 7.387265 TTCAATAAGGGGCTACATATGAAGA 57.613 36.000 10.38 0.00 0.00 2.87
567 694 8.278639 TCAATAAGGGGCTACATATGAAGAAAA 58.721 33.333 10.38 0.00 0.00 2.29
571 698 6.672593 AGGGGCTACATATGAAGAAAAATGA 58.327 36.000 10.38 0.00 0.00 2.57
676 2954 2.108970 ACTCCCTCCGTCCAGAAATAC 58.891 52.381 0.00 0.00 0.00 1.89
681 2959 3.522553 CCTCCGTCCAGAAATACTTGTC 58.477 50.000 0.00 0.00 0.00 3.18
682 2960 3.522553 CTCCGTCCAGAAATACTTGTCC 58.477 50.000 0.00 0.00 0.00 4.02
684 2962 4.346730 TCCGTCCAGAAATACTTGTCCTA 58.653 43.478 0.00 0.00 0.00 2.94
686 2964 5.246656 TCCGTCCAGAAATACTTGTCCTAAA 59.753 40.000 0.00 0.00 0.00 1.85
690 2968 7.962918 CGTCCAGAAATACTTGTCCTAAAAATG 59.037 37.037 0.00 0.00 0.00 2.32
693 2971 8.462016 CCAGAAATACTTGTCCTAAAAATGGAG 58.538 37.037 0.00 0.00 33.78 3.86
694 2972 9.231297 CAGAAATACTTGTCCTAAAAATGGAGA 57.769 33.333 0.00 0.00 33.78 3.71
695 2973 9.807921 AGAAATACTTGTCCTAAAAATGGAGAA 57.192 29.630 0.00 0.00 35.85 2.87
700 2978 8.477419 ACTTGTCCTAAAAATGGAGAAAATGA 57.523 30.769 0.00 0.00 36.60 2.57
702 2980 9.415544 CTTGTCCTAAAAATGGAGAAAATGAAG 57.584 33.333 0.00 0.00 36.60 3.02
703 2981 8.477419 TGTCCTAAAAATGGAGAAAATGAAGT 57.523 30.769 0.00 0.00 33.78 3.01
704 2982 9.581289 TGTCCTAAAAATGGAGAAAATGAAGTA 57.419 29.630 0.00 0.00 33.78 2.24
705 2983 9.841880 GTCCTAAAAATGGAGAAAATGAAGTAC 57.158 33.333 0.00 0.00 33.78 2.73
706 2984 9.807921 TCCTAAAAATGGAGAAAATGAAGTACT 57.192 29.630 0.00 0.00 0.00 2.73
710 2988 6.743575 AATGGAGAAAATGAAGTACTTCCG 57.256 37.500 28.43 0.00 38.77 4.30
716 3295 7.255001 GGAGAAAATGAAGTACTTCCGTTTGAA 60.255 37.037 28.43 11.79 38.77 2.69
740 3319 3.118408 CCAGACCGGGAAGATGAAATGTA 60.118 47.826 6.32 0.00 0.00 2.29
773 3353 1.336887 CCAGTTCGATCACAGTTCCGT 60.337 52.381 0.00 0.00 0.00 4.69
823 3403 2.058593 TCGGAATCTCAGCAGCTCTA 57.941 50.000 0.00 0.00 0.00 2.43
929 3523 4.778143 ACATGCCGCTCCCCGTTC 62.778 66.667 0.00 0.00 34.38 3.95
930 3524 4.776322 CATGCCGCTCCCCGTTCA 62.776 66.667 0.00 0.00 34.38 3.18
931 3525 4.473520 ATGCCGCTCCCCGTTCAG 62.474 66.667 0.00 0.00 34.38 3.02
973 3567 4.416601 CCCTCCCCGTTCTCCCCT 62.417 72.222 0.00 0.00 0.00 4.79
974 3568 2.764547 CCTCCCCGTTCTCCCCTC 60.765 72.222 0.00 0.00 0.00 4.30
976 3570 3.607299 TCCCCGTTCTCCCCTCCA 61.607 66.667 0.00 0.00 0.00 3.86
978 3572 2.284699 CCCGTTCTCCCCTCCACT 60.285 66.667 0.00 0.00 0.00 4.00
979 3573 2.359967 CCCGTTCTCCCCTCCACTC 61.360 68.421 0.00 0.00 0.00 3.51
980 3574 1.305381 CCGTTCTCCCCTCCACTCT 60.305 63.158 0.00 0.00 0.00 3.24
981 3575 1.324005 CCGTTCTCCCCTCCACTCTC 61.324 65.000 0.00 0.00 0.00 3.20
982 3576 0.323908 CGTTCTCCCCTCCACTCTCT 60.324 60.000 0.00 0.00 0.00 3.10
983 3577 1.190643 GTTCTCCCCTCCACTCTCTG 58.809 60.000 0.00 0.00 0.00 3.35
1028 3623 2.046988 CTCTCATGGCCGCACACA 60.047 61.111 0.00 0.00 0.00 3.72
1332 3936 1.958288 CCAGGAGAAGAAGGGGAAGA 58.042 55.000 0.00 0.00 0.00 2.87
1335 3939 2.238395 CAGGAGAAGAAGGGGAAGAAGG 59.762 54.545 0.00 0.00 0.00 3.46
1338 3942 3.445987 GAGAAGAAGGGGAAGAAGGAGA 58.554 50.000 0.00 0.00 0.00 3.71
1343 3947 1.959710 AGGGGAAGAAGGAGAAGGAC 58.040 55.000 0.00 0.00 0.00 3.85
1344 3948 0.537653 GGGGAAGAAGGAGAAGGACG 59.462 60.000 0.00 0.00 0.00 4.79
1345 3949 1.558233 GGGAAGAAGGAGAAGGACGA 58.442 55.000 0.00 0.00 0.00 4.20
1346 3950 1.478916 GGGAAGAAGGAGAAGGACGAG 59.521 57.143 0.00 0.00 0.00 4.18
1347 3951 2.448453 GGAAGAAGGAGAAGGACGAGA 58.552 52.381 0.00 0.00 0.00 4.04
1348 3952 2.826725 GGAAGAAGGAGAAGGACGAGAA 59.173 50.000 0.00 0.00 0.00 2.87
1349 3953 3.119280 GGAAGAAGGAGAAGGACGAGAAG 60.119 52.174 0.00 0.00 0.00 2.85
1350 3954 2.452505 AGAAGGAGAAGGACGAGAAGG 58.547 52.381 0.00 0.00 0.00 3.46
1351 3955 2.041891 AGAAGGAGAAGGACGAGAAGGA 59.958 50.000 0.00 0.00 0.00 3.36
1363 3967 1.681486 GAGAAGGAGGAAGAGGGCGG 61.681 65.000 0.00 0.00 0.00 6.13
1364 3968 3.393149 GAAGGAGGAAGAGGGCGGC 62.393 68.421 0.00 0.00 0.00 6.53
1536 4140 1.030488 CAATCCAGCTGTGCTCCCAG 61.030 60.000 13.81 0.00 36.40 4.45
1596 4203 7.332182 GCTGTGCTCTTAGTAGTACTGAAATTT 59.668 37.037 13.29 0.00 34.47 1.82
1610 4217 8.686334 AGTACTGAAATTTGTGAAATGTCTTGT 58.314 29.630 0.00 0.00 36.32 3.16
1617 4224 7.951530 ATTTGTGAAATGTCTTGTGAATTCC 57.048 32.000 2.27 0.00 0.00 3.01
1649 4256 2.977772 AGCTAGTGATTCTGGTGCTC 57.022 50.000 0.00 0.00 0.00 4.26
1661 4278 4.511786 TCTGGTGCTCAGATACTACTCT 57.488 45.455 6.30 0.00 46.71 3.24
1682 4299 1.939934 GTAGTGGCGCATGATAGCAAA 59.060 47.619 10.83 0.00 34.54 3.68
1683 4300 1.019673 AGTGGCGCATGATAGCAAAG 58.980 50.000 10.83 0.00 34.54 2.77
1684 4301 1.016627 GTGGCGCATGATAGCAAAGA 58.983 50.000 10.83 0.00 34.54 2.52
1686 4303 0.308993 GGCGCATGATAGCAAAGACC 59.691 55.000 10.83 0.00 34.54 3.85
1687 4304 1.016627 GCGCATGATAGCAAAGACCA 58.983 50.000 0.30 0.00 0.00 4.02
1689 4306 2.033801 GCGCATGATAGCAAAGACCATT 59.966 45.455 0.30 0.00 0.00 3.16
1692 4309 3.633525 GCATGATAGCAAAGACCATTGGA 59.366 43.478 10.37 0.00 0.00 3.53
1694 4311 4.574674 TGATAGCAAAGACCATTGGACT 57.425 40.909 10.37 5.67 0.00 3.85
1704 4321 3.055530 AGACCATTGGACTGCAGAACTAG 60.056 47.826 23.35 5.31 0.00 2.57
1706 4323 2.012673 CATTGGACTGCAGAACTAGCC 58.987 52.381 23.35 11.50 0.00 3.93
1727 4344 4.082895 GCCATTCACATATCTGCTGATTCC 60.083 45.833 11.65 0.00 34.32 3.01
1732 4349 5.748402 TCACATATCTGCTGATTCCTGTTT 58.252 37.500 11.65 0.00 34.32 2.83
1733 4350 5.587443 TCACATATCTGCTGATTCCTGTTTG 59.413 40.000 11.65 3.94 34.32 2.93
1734 4351 5.587443 CACATATCTGCTGATTCCTGTTTGA 59.413 40.000 11.65 0.00 34.32 2.69
1735 4352 5.587844 ACATATCTGCTGATTCCTGTTTGAC 59.412 40.000 11.65 0.00 34.32 3.18
1741 4358 5.263599 TGCTGATTCCTGTTTGACCATTAT 58.736 37.500 0.00 0.00 0.00 1.28
1748 4365 6.773976 TCCTGTTTGACCATTATGAAATCC 57.226 37.500 0.00 0.00 0.00 3.01
1766 4383 3.764237 TCCTTCAAGTAAACGCCTTCT 57.236 42.857 0.00 0.00 0.00 2.85
1778 4395 3.369546 ACGCCTTCTTTGGACATTTTG 57.630 42.857 0.00 0.00 0.00 2.44
1788 4406 9.161629 CTTCTTTGGACATTTTGGTTAAACTTT 57.838 29.630 0.00 0.00 0.00 2.66
1866 4484 2.307098 GCCTATGCAGGATTGGAGGTAT 59.693 50.000 6.58 0.00 45.91 2.73
1867 4485 3.519510 GCCTATGCAGGATTGGAGGTATA 59.480 47.826 6.58 0.00 45.91 1.47
1873 4491 5.624159 TGCAGGATTGGAGGTATATTCTTG 58.376 41.667 0.00 0.00 0.00 3.02
1910 4633 2.567615 TCCTCTACCTTCTTGTCAAGGC 59.432 50.000 12.66 0.00 46.34 4.35
1911 4634 2.569404 CCTCTACCTTCTTGTCAAGGCT 59.431 50.000 12.66 0.00 46.34 4.58
1916 4639 4.640771 ACCTTCTTGTCAAGGCTTATGA 57.359 40.909 12.66 0.00 46.34 2.15
1935 4658 8.560374 GCTTATGATCATTTCCACCTAAACTAC 58.440 37.037 14.65 0.00 0.00 2.73
1936 4659 9.838339 CTTATGATCATTTCCACCTAAACTACT 57.162 33.333 14.65 0.00 0.00 2.57
1939 4662 9.838339 ATGATCATTTCCACCTAAACTACTTAG 57.162 33.333 1.18 0.00 37.36 2.18
1952 4675 8.623030 CCTAAACTACTTAGTCCACTACAGATC 58.377 40.741 0.00 0.00 36.06 2.75
1953 4676 9.398538 CTAAACTACTTAGTCCACTACAGATCT 57.601 37.037 0.00 0.00 34.99 2.75
1955 4678 7.633193 ACTACTTAGTCCACTACAGATCTTG 57.367 40.000 0.00 0.00 0.00 3.02
1958 4681 7.341445 ACTTAGTCCACTACAGATCTTGATC 57.659 40.000 0.00 2.60 0.00 2.92
1959 4682 7.122715 ACTTAGTCCACTACAGATCTTGATCT 58.877 38.462 7.27 7.27 0.00 2.75
1960 4683 7.617723 ACTTAGTCCACTACAGATCTTGATCTT 59.382 37.037 10.14 5.74 0.00 2.40
1961 4684 6.219417 AGTCCACTACAGATCTTGATCTTG 57.781 41.667 10.14 6.70 0.00 3.02
1962 4685 5.719085 AGTCCACTACAGATCTTGATCTTGT 59.281 40.000 10.14 13.06 0.00 3.16
1963 4686 6.039616 GTCCACTACAGATCTTGATCTTGTC 58.960 44.000 10.14 0.68 0.00 3.18
1964 4687 5.716703 TCCACTACAGATCTTGATCTTGTCA 59.283 40.000 10.14 0.00 34.25 3.58
1966 4689 7.561356 TCCACTACAGATCTTGATCTTGTCATA 59.439 37.037 10.14 0.00 36.54 2.15
1967 4690 7.866898 CCACTACAGATCTTGATCTTGTCATAG 59.133 40.741 10.14 9.45 36.54 2.23
1968 4691 8.628280 CACTACAGATCTTGATCTTGTCATAGA 58.372 37.037 10.14 0.00 36.54 1.98
1969 4692 9.194972 ACTACAGATCTTGATCTTGTCATAGAA 57.805 33.333 10.14 0.00 36.54 2.10
1995 4938 5.405935 AGGGTTGCAACTTTGGATTAATC 57.594 39.130 27.64 6.93 0.00 1.75
2072 5015 6.006275 ACCATGTCTGCAGGTCTATTATTT 57.994 37.500 15.13 0.00 0.00 1.40
2135 5078 7.307811 GGGACAGTAAGTAACTTCAACATGAAC 60.308 40.741 0.00 0.00 35.76 3.18
2158 5101 6.576185 ACAACATTTCTGTTTTCATTCTGCT 58.424 32.000 0.00 0.00 43.05 4.24
2160 5103 4.986659 ACATTTCTGTTTTCATTCTGCTGC 59.013 37.500 0.00 0.00 28.70 5.25
2161 5104 3.648339 TTCTGTTTTCATTCTGCTGCC 57.352 42.857 0.00 0.00 0.00 4.85
2162 5105 2.585330 TCTGTTTTCATTCTGCTGCCA 58.415 42.857 0.00 0.00 0.00 4.92
2177 5120 2.864343 GCTGCCATGCATTTTCTCATTC 59.136 45.455 0.00 0.00 38.13 2.67
2180 5123 5.092554 TGCCATGCATTTTCTCATTCAAT 57.907 34.783 0.00 0.00 31.71 2.57
2186 5129 7.960738 CCATGCATTTTCTCATTCAATTTTGTC 59.039 33.333 0.00 0.00 0.00 3.18
2191 5134 8.971321 CATTTTCTCATTCAATTTTGTCGACTT 58.029 29.630 17.92 0.00 0.00 3.01
2374 5521 2.913617 CCTTTCTCCCTTGGGAACTACT 59.086 50.000 9.93 0.00 0.00 2.57
2432 5579 4.332828 GTGTTGGGCAGGTTAGTTTCTAT 58.667 43.478 0.00 0.00 0.00 1.98
2435 5582 4.919774 TGGGCAGGTTAGTTTCTATTCA 57.080 40.909 0.00 0.00 0.00 2.57
2530 5734 9.736023 ACAGAAAAACTAATTTAGCTGTTCTTG 57.264 29.630 8.82 7.87 40.75 3.02
2671 5919 3.999663 GGACTGACAACTTTCTGATCCAG 59.000 47.826 0.00 0.00 0.00 3.86
2868 6117 8.429493 AGCTATAATTGTAAGTTCGTAAACCC 57.571 34.615 0.00 0.00 35.92 4.11
3041 6685 8.287350 ACTCCCTCTATAAACTAATGTAGGACA 58.713 37.037 0.00 0.00 0.00 4.02
3529 7190 2.860735 CAAGATGAGACGGAAATCGGTC 59.139 50.000 11.82 11.82 44.45 4.79
3609 7270 3.777478 TGCTACTTATGTAACACGGCTC 58.223 45.455 0.00 0.00 0.00 4.70
3632 7293 7.068692 TCGCTAAGGTAATTAAGCTTTTGTC 57.931 36.000 3.20 0.00 43.37 3.18
3700 7364 4.015872 TCTTTTTGTCAACCTCGGCTAT 57.984 40.909 0.00 0.00 0.00 2.97
3719 7383 5.107298 GGCTATTATTGCTAACTGCTTCTCG 60.107 44.000 0.00 0.00 43.37 4.04
3722 7386 1.698165 TTGCTAACTGCTTCTCGTCG 58.302 50.000 0.00 0.00 43.37 5.12
3877 7541 5.724328 AGAAATACAAGCGATTGTCAGAGA 58.276 37.500 24.05 5.23 36.44 3.10
4025 7691 1.443872 CCAGTAGTCGACACGCACC 60.444 63.158 19.50 0.00 0.00 5.01
4035 7701 0.729116 GACACGCACCATCCTTCATG 59.271 55.000 0.00 0.00 0.00 3.07
4072 7738 0.882474 GTCCCTCGGTATGATCTCCG 59.118 60.000 14.87 14.87 46.93 4.63
4156 7822 2.843730 TCCATGGGCTTGTAGCTTAAGA 59.156 45.455 13.02 0.00 41.99 2.10
4157 7823 3.118261 TCCATGGGCTTGTAGCTTAAGAG 60.118 47.826 13.02 0.00 41.99 2.85
4175 7841 3.990386 AAGAGCATCTGCAAGAGCATCTC 60.990 47.826 4.79 0.00 46.91 2.75
4176 7842 7.700021 TAAGAGCATCTGCAAGAGCATCTCC 62.700 48.000 4.79 0.00 46.91 3.71
4200 7866 4.035102 GCCCCCAACGAAGCCTCT 62.035 66.667 0.00 0.00 0.00 3.69
4201 7867 2.269241 CCCCCAACGAAGCCTCTC 59.731 66.667 0.00 0.00 0.00 3.20
4202 7868 2.592993 CCCCCAACGAAGCCTCTCA 61.593 63.158 0.00 0.00 0.00 3.27
4203 7869 1.078848 CCCCAACGAAGCCTCTCAG 60.079 63.158 0.00 0.00 0.00 3.35
4204 7870 1.078848 CCCAACGAAGCCTCTCAGG 60.079 63.158 0.00 0.00 38.80 3.86
4205 7871 1.674057 CCAACGAAGCCTCTCAGGT 59.326 57.895 0.00 0.00 37.80 4.00
4206 7872 0.671781 CCAACGAAGCCTCTCAGGTG 60.672 60.000 0.00 0.00 37.80 4.00
4207 7873 0.318441 CAACGAAGCCTCTCAGGTGA 59.682 55.000 0.00 0.00 37.80 4.02
4208 7874 0.318762 AACGAAGCCTCTCAGGTGAC 59.681 55.000 0.00 0.00 37.80 3.67
4209 7875 0.540830 ACGAAGCCTCTCAGGTGACT 60.541 55.000 0.00 0.00 46.44 3.41
4210 7876 0.605589 CGAAGCCTCTCAGGTGACTT 59.394 55.000 0.00 0.00 40.21 3.01
4211 7877 1.001406 CGAAGCCTCTCAGGTGACTTT 59.999 52.381 0.00 0.00 40.21 2.66
4212 7878 2.548920 CGAAGCCTCTCAGGTGACTTTT 60.549 50.000 0.00 0.00 40.21 2.27
4213 7879 2.849294 AGCCTCTCAGGTGACTTTTC 57.151 50.000 0.00 0.00 40.21 2.29
4214 7880 1.001406 AGCCTCTCAGGTGACTTTTCG 59.999 52.381 0.00 0.00 40.21 3.46
4215 7881 1.941668 GCCTCTCAGGTGACTTTTCGG 60.942 57.143 0.00 0.00 40.21 4.30
4216 7882 1.433534 CTCTCAGGTGACTTTTCGGC 58.566 55.000 0.00 0.00 40.21 5.54
4217 7883 0.034896 TCTCAGGTGACTTTTCGGCC 59.965 55.000 0.00 0.00 40.21 6.13
4218 7884 1.291877 CTCAGGTGACTTTTCGGCCG 61.292 60.000 22.12 22.12 40.21 6.13
4219 7885 2.668550 AGGTGACTTTTCGGCCGC 60.669 61.111 23.51 5.62 37.44 6.53
4220 7886 2.668550 GGTGACTTTTCGGCCGCT 60.669 61.111 23.51 0.00 0.00 5.52
4221 7887 2.556287 GTGACTTTTCGGCCGCTG 59.444 61.111 23.51 12.48 0.00 5.18
4222 7888 2.668212 TGACTTTTCGGCCGCTGG 60.668 61.111 23.51 12.80 0.00 4.85
4246 7912 4.870190 AAAAAGGTCCAGTCGCGT 57.130 50.000 5.77 0.00 0.00 6.01
4247 7913 2.613390 AAAAAGGTCCAGTCGCGTC 58.387 52.632 5.77 0.00 0.00 5.19
4248 7914 0.883370 AAAAAGGTCCAGTCGCGTCC 60.883 55.000 5.77 0.00 0.00 4.79
4249 7915 2.726822 AAAAGGTCCAGTCGCGTCCC 62.727 60.000 5.77 0.00 0.00 4.46
4252 7918 4.436998 GTCCAGTCGCGTCCCCAG 62.437 72.222 5.77 0.00 0.00 4.45
4260 7926 3.728373 GCGTCCCCAGGGGTTCAT 61.728 66.667 25.52 0.00 44.74 2.57
4261 7927 3.087065 CGTCCCCAGGGGTTCATT 58.913 61.111 25.52 0.00 44.74 2.57
4262 7928 1.382629 CGTCCCCAGGGGTTCATTT 59.617 57.895 25.52 0.00 44.74 2.32
4263 7929 0.251608 CGTCCCCAGGGGTTCATTTT 60.252 55.000 25.52 0.00 44.74 1.82
4264 7930 1.825641 CGTCCCCAGGGGTTCATTTTT 60.826 52.381 25.52 0.00 44.74 1.94
4265 7931 1.899814 GTCCCCAGGGGTTCATTTTTC 59.100 52.381 25.52 1.65 44.74 2.29
4266 7932 0.894835 CCCCAGGGGTTCATTTTTCG 59.105 55.000 18.09 0.00 38.25 3.46
4267 7933 0.246360 CCCAGGGGTTCATTTTTCGC 59.754 55.000 0.00 0.00 0.00 4.70
4268 7934 0.246360 CCAGGGGTTCATTTTTCGCC 59.754 55.000 0.00 0.00 34.97 5.54
4269 7935 0.109319 CAGGGGTTCATTTTTCGCCG 60.109 55.000 0.00 0.00 38.83 6.46
4270 7936 1.214325 GGGGTTCATTTTTCGCCGG 59.786 57.895 0.00 0.00 0.00 6.13
4271 7937 1.245376 GGGGTTCATTTTTCGCCGGA 61.245 55.000 5.05 0.00 0.00 5.14
4272 7938 0.815095 GGGTTCATTTTTCGCCGGAT 59.185 50.000 5.05 0.00 0.00 4.18
4273 7939 1.202256 GGGTTCATTTTTCGCCGGATC 60.202 52.381 5.05 0.00 0.00 3.36
4274 7940 1.531058 GGTTCATTTTTCGCCGGATCG 60.531 52.381 5.05 0.00 0.00 3.69
4275 7941 1.395608 GTTCATTTTTCGCCGGATCGA 59.604 47.619 5.05 1.76 36.60 3.59
4276 7942 1.286501 TCATTTTTCGCCGGATCGAG 58.713 50.000 5.05 0.00 39.82 4.04
4277 7943 0.316196 CATTTTTCGCCGGATCGAGC 60.316 55.000 5.05 0.00 39.82 5.03
4278 7944 0.462047 ATTTTTCGCCGGATCGAGCT 60.462 50.000 5.05 0.00 39.82 4.09
4279 7945 1.358725 TTTTTCGCCGGATCGAGCTG 61.359 55.000 5.05 1.51 39.82 4.24
4280 7946 2.220615 TTTTCGCCGGATCGAGCTGA 62.221 55.000 11.95 0.00 39.82 4.26
4281 7947 2.220615 TTTCGCCGGATCGAGCTGAA 62.221 55.000 11.95 2.70 39.82 3.02
4282 7948 2.202743 CGCCGGATCGAGCTGAAA 60.203 61.111 11.95 0.00 0.00 2.69
4283 7949 1.592669 CGCCGGATCGAGCTGAAAT 60.593 57.895 11.95 0.00 0.00 2.17
4284 7950 1.154205 CGCCGGATCGAGCTGAAATT 61.154 55.000 11.95 0.00 0.00 1.82
4285 7951 0.305922 GCCGGATCGAGCTGAAATTG 59.694 55.000 11.95 0.00 0.00 2.32
4286 7952 0.940126 CCGGATCGAGCTGAAATTGG 59.060 55.000 11.95 0.00 0.00 3.16
4287 7953 0.305922 CGGATCGAGCTGAAATTGGC 59.694 55.000 2.56 0.00 0.00 4.52
4288 7954 0.305922 GGATCGAGCTGAAATTGGCG 59.694 55.000 0.00 0.00 0.00 5.69
4289 7955 0.316524 GATCGAGCTGAAATTGGCGC 60.317 55.000 0.00 0.00 0.00 6.53
4290 7956 1.718757 ATCGAGCTGAAATTGGCGCC 61.719 55.000 22.73 22.73 0.00 6.53
4291 7957 2.100991 GAGCTGAAATTGGCGCCG 59.899 61.111 23.90 6.39 0.00 6.46
4292 7958 3.401243 GAGCTGAAATTGGCGCCGG 62.401 63.158 23.90 0.00 0.00 6.13
4294 7960 4.834892 CTGAAATTGGCGCCGGCG 62.835 66.667 43.13 43.13 41.24 6.46
4311 7977 2.124860 GGACCCAACCCGAATCCG 60.125 66.667 0.00 0.00 0.00 4.18
4366 8032 2.745884 CGAAAGCATCGTGGGCCA 60.746 61.111 0.00 0.00 46.52 5.36
4367 8033 2.753966 CGAAAGCATCGTGGGCCAG 61.754 63.158 6.40 0.73 46.52 4.85
4368 8034 3.056313 GAAAGCATCGTGGGCCAGC 62.056 63.158 6.40 6.99 0.00 4.85
4387 8053 2.574736 GCGTCAGCGACTCGACTC 60.575 66.667 1.63 0.00 41.33 3.36
4388 8054 2.276120 CGTCAGCGACTCGACTCG 60.276 66.667 9.73 9.73 41.33 4.18
4394 8060 4.655154 CGACTCGACTCGCTTCTC 57.345 61.111 1.53 0.00 0.00 2.87
4395 8061 1.296288 CGACTCGACTCGCTTCTCG 60.296 63.158 1.53 0.00 40.15 4.04
4396 8062 1.581657 GACTCGACTCGCTTCTCGC 60.582 63.158 0.00 0.00 38.27 5.03
4405 8071 3.546397 GCTTCTCGCGGCTTCGTC 61.546 66.667 6.13 0.00 36.07 4.20
4406 8072 3.241059 CTTCTCGCGGCTTCGTCG 61.241 66.667 6.13 0.00 36.07 5.12
4407 8073 3.948086 CTTCTCGCGGCTTCGTCGT 62.948 63.158 6.13 0.00 35.86 4.34
4408 8074 3.940975 TTCTCGCGGCTTCGTCGTC 62.941 63.158 6.13 0.00 35.86 4.20
4412 8078 4.415332 GCGGCTTCGTCGTCCTCA 62.415 66.667 0.00 0.00 36.07 3.86
4413 8079 2.490217 CGGCTTCGTCGTCCTCAT 59.510 61.111 0.00 0.00 0.00 2.90
4414 8080 1.586564 CGGCTTCGTCGTCCTCATC 60.587 63.158 0.00 0.00 0.00 2.92
4415 8081 1.586564 GGCTTCGTCGTCCTCATCG 60.587 63.158 0.00 0.00 0.00 3.84
4416 8082 2.224885 GCTTCGTCGTCCTCATCGC 61.225 63.158 0.00 0.00 0.00 4.58
4417 8083 1.586564 CTTCGTCGTCCTCATCGCC 60.587 63.158 0.00 0.00 0.00 5.54
4418 8084 1.994507 CTTCGTCGTCCTCATCGCCT 61.995 60.000 0.00 0.00 0.00 5.52
4419 8085 1.989966 TTCGTCGTCCTCATCGCCTC 61.990 60.000 0.00 0.00 0.00 4.70
4420 8086 2.024871 GTCGTCCTCATCGCCTCG 59.975 66.667 0.00 0.00 0.00 4.63
4421 8087 2.437895 TCGTCCTCATCGCCTCGT 60.438 61.111 0.00 0.00 0.00 4.18
4422 8088 2.044555 TCGTCCTCATCGCCTCGTT 61.045 57.895 0.00 0.00 0.00 3.85
4423 8089 1.153823 CGTCCTCATCGCCTCGTTT 60.154 57.895 0.00 0.00 0.00 3.60
4424 8090 1.140407 CGTCCTCATCGCCTCGTTTC 61.140 60.000 0.00 0.00 0.00 2.78
4425 8091 0.806492 GTCCTCATCGCCTCGTTTCC 60.806 60.000 0.00 0.00 0.00 3.13
4426 8092 1.521681 CCTCATCGCCTCGTTTCCC 60.522 63.158 0.00 0.00 0.00 3.97
4427 8093 1.878522 CTCATCGCCTCGTTTCCCG 60.879 63.158 0.00 0.00 38.13 5.14
4428 8094 3.564027 CATCGCCTCGTTTCCCGC 61.564 66.667 0.00 0.00 36.19 6.13
4435 8101 4.745751 TCGTTTCCCGCGGCGAAT 62.746 61.111 25.92 0.00 36.19 3.34
4436 8102 4.218478 CGTTTCCCGCGGCGAATC 62.218 66.667 25.92 20.47 0.00 2.52
4437 8103 3.122323 GTTTCCCGCGGCGAATCA 61.122 61.111 25.92 8.08 0.00 2.57
4438 8104 2.358860 TTTCCCGCGGCGAATCAA 60.359 55.556 25.92 7.35 0.00 2.57
4439 8105 1.747367 TTTCCCGCGGCGAATCAAT 60.747 52.632 25.92 0.00 0.00 2.57
4440 8106 1.987704 TTTCCCGCGGCGAATCAATG 61.988 55.000 25.92 2.11 0.00 2.82
4441 8107 4.612536 CCCGCGGCGAATCAATGC 62.613 66.667 25.92 0.00 0.00 3.56
4448 8114 3.727419 GCGAATCAATGCCAAAGCT 57.273 47.368 0.00 0.00 40.80 3.74
4449 8115 1.274596 GCGAATCAATGCCAAAGCTG 58.725 50.000 0.00 0.00 40.80 4.24
4450 8116 1.274596 CGAATCAATGCCAAAGCTGC 58.725 50.000 0.00 0.00 40.80 5.25
4451 8117 1.403116 CGAATCAATGCCAAAGCTGCA 60.403 47.619 1.02 0.00 43.97 4.41
4452 8118 1.997606 GAATCAATGCCAAAGCTGCAC 59.002 47.619 1.02 0.00 42.38 4.57
4453 8119 0.108992 ATCAATGCCAAAGCTGCACG 60.109 50.000 1.02 0.00 42.38 5.34
4454 8120 2.048877 AATGCCAAAGCTGCACGC 60.049 55.556 1.02 0.00 42.38 5.34
4455 8121 3.902162 AATGCCAAAGCTGCACGCG 62.902 57.895 3.53 3.53 45.59 6.01
4459 8125 3.095278 CAAAGCTGCACGCGCTTG 61.095 61.111 9.92 9.92 46.24 4.01
4460 8126 3.585990 AAAGCTGCACGCGCTTGT 61.586 55.556 15.84 0.00 46.24 3.16
4461 8127 2.250939 AAAGCTGCACGCGCTTGTA 61.251 52.632 15.84 10.26 46.24 2.41
4462 8128 1.781025 AAAGCTGCACGCGCTTGTAA 61.781 50.000 15.84 3.63 46.24 2.41
4567 8233 3.951680 TCATCTCTTGCATTGCATCATGT 59.048 39.130 12.95 0.00 38.76 3.21
4755 10099 8.903059 ATTTGGAATTAACCATAACCCACTTA 57.097 30.769 0.00 0.00 39.82 2.24
4782 10126 2.325583 TCCCATGCCGTTGTTATCTC 57.674 50.000 0.00 0.00 0.00 2.75
4810 10154 1.005450 GGTCTCCAACCTTGCCCATAA 59.995 52.381 0.00 0.00 45.45 1.90
4811 10155 2.358195 GGTCTCCAACCTTGCCCATAAT 60.358 50.000 0.00 0.00 45.45 1.28
4827 10171 9.517868 TTGCCCATAATTTCTTTCATCATTTTT 57.482 25.926 0.00 0.00 0.00 1.94
4846 10190 5.467035 TTTTCGGAGCTCCATCAAAAATT 57.533 34.783 31.67 0.00 35.14 1.82
4873 10217 7.655732 CGAACATTTTTGGACCTTCCTTTTATT 59.344 33.333 0.00 0.00 37.46 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.582005 GCGCGAAAGTAGGGCTTATG 59.418 55.000 12.10 0.00 43.09 1.90
2 3 2.987752 GCGCGAAAGTAGGGCTTAT 58.012 52.632 12.10 0.00 43.09 1.73
13 14 2.217847 GCTATCGTTCATAAGCGCGAAA 59.782 45.455 12.10 0.00 36.92 3.46
24 25 3.342719 TGCAATTTGAGGCTATCGTTCA 58.657 40.909 0.00 0.00 0.00 3.18
28 29 5.585390 AGATTTTGCAATTTGAGGCTATCG 58.415 37.500 0.00 0.00 0.00 2.92
31 32 5.018809 AGGAGATTTTGCAATTTGAGGCTA 58.981 37.500 0.00 0.00 0.00 3.93
35 36 6.205101 AGCTAGGAGATTTTGCAATTTGAG 57.795 37.500 0.00 0.00 0.00 3.02
36 37 6.658816 TGTAGCTAGGAGATTTTGCAATTTGA 59.341 34.615 0.00 0.00 0.00 2.69
55 56 0.395686 AGATGGCGCATCATGTAGCT 59.604 50.000 10.83 0.00 42.72 3.32
107 108 4.820716 GGGAGTATCTAACGAACAGCTCTA 59.179 45.833 0.00 0.00 33.73 2.43
109 110 3.633065 AGGGAGTATCTAACGAACAGCTC 59.367 47.826 0.00 0.00 33.73 4.09
111 112 3.243468 GGAGGGAGTATCTAACGAACAGC 60.243 52.174 0.00 0.00 33.73 4.40
122 123 5.915175 ACAAGTATTTTCGGAGGGAGTATC 58.085 41.667 0.00 0.00 0.00 2.24
176 177 9.759473 TCTCTCCATTCAGAATTTTATCCTTTT 57.241 29.630 0.00 0.00 0.00 2.27
177 178 9.406113 CTCTCTCCATTCAGAATTTTATCCTTT 57.594 33.333 0.00 0.00 0.00 3.11
178 179 8.555729 ACTCTCTCCATTCAGAATTTTATCCTT 58.444 33.333 0.00 0.00 0.00 3.36
179 180 8.100135 ACTCTCTCCATTCAGAATTTTATCCT 57.900 34.615 0.00 0.00 0.00 3.24
180 181 9.838339 TTACTCTCTCCATTCAGAATTTTATCC 57.162 33.333 0.00 0.00 0.00 2.59
184 185 8.924511 TTGTTACTCTCTCCATTCAGAATTTT 57.075 30.769 0.00 0.00 0.00 1.82
185 186 8.954350 CATTGTTACTCTCTCCATTCAGAATTT 58.046 33.333 0.00 0.00 0.00 1.82
186 187 8.324306 TCATTGTTACTCTCTCCATTCAGAATT 58.676 33.333 0.00 0.00 0.00 2.17
187 188 7.855375 TCATTGTTACTCTCTCCATTCAGAAT 58.145 34.615 0.00 0.00 0.00 2.40
188 189 7.244886 TCATTGTTACTCTCTCCATTCAGAA 57.755 36.000 0.00 0.00 0.00 3.02
189 190 6.857437 TCATTGTTACTCTCTCCATTCAGA 57.143 37.500 0.00 0.00 0.00 3.27
190 191 8.503458 AAATCATTGTTACTCTCTCCATTCAG 57.497 34.615 0.00 0.00 0.00 3.02
191 192 8.868522 AAAATCATTGTTACTCTCTCCATTCA 57.131 30.769 0.00 0.00 0.00 2.57
219 220 8.726870 AAACGGTGCTTACATATAGTATTTGT 57.273 30.769 10.53 10.53 31.53 2.83
224 225 6.865411 TGTGAAACGGTGCTTACATATAGTA 58.135 36.000 0.00 0.00 42.39 1.82
225 226 5.726397 TGTGAAACGGTGCTTACATATAGT 58.274 37.500 0.00 0.00 42.39 2.12
226 227 6.844696 ATGTGAAACGGTGCTTACATATAG 57.155 37.500 0.00 0.00 42.39 1.31
257 258 0.317854 GCCTTCCGTGTCAACAAAGC 60.318 55.000 0.00 0.00 0.00 3.51
260 261 2.552599 TATGCCTTCCGTGTCAACAA 57.447 45.000 0.00 0.00 0.00 2.83
272 273 4.578928 ACGAGTTTTCTGTGTTTATGCCTT 59.421 37.500 0.00 0.00 0.00 4.35
282 283 7.643764 ACATGATTTTTGTACGAGTTTTCTGTG 59.356 33.333 0.00 0.00 0.00 3.66
283 284 7.703328 ACATGATTTTTGTACGAGTTTTCTGT 58.297 30.769 0.00 0.00 0.00 3.41
294 295 5.272167 TCGACCGAACATGATTTTTGTAC 57.728 39.130 0.00 0.00 0.00 2.90
298 299 6.459573 CCCATATTCGACCGAACATGATTTTT 60.460 38.462 20.74 0.78 40.36 1.94
302 306 3.071023 ACCCATATTCGACCGAACATGAT 59.929 43.478 20.74 8.91 40.36 2.45
312 316 1.202371 TCGTGAGCACCCATATTCGAC 60.202 52.381 0.00 0.00 0.00 4.20
318 322 0.390603 CGGTTTCGTGAGCACCCATA 60.391 55.000 0.00 0.00 32.27 2.74
320 324 2.280524 CGGTTTCGTGAGCACCCA 60.281 61.111 0.00 0.00 32.27 4.51
351 356 3.600388 CTGCTAGTTTCAGTTACCTGGG 58.400 50.000 0.00 0.00 39.31 4.45
367 372 0.177373 TCGCTCGACTAGTCCTGCTA 59.823 55.000 23.50 15.14 0.00 3.49
368 373 1.078356 TCGCTCGACTAGTCCTGCT 60.078 57.895 23.50 0.00 0.00 4.24
369 374 1.353804 CTCGCTCGACTAGTCCTGC 59.646 63.158 17.23 18.33 0.00 4.85
370 375 1.353804 GCTCGCTCGACTAGTCCTG 59.646 63.158 17.23 10.81 0.00 3.86
400 405 5.730550 AGTGATATTTGTAAAGCTGTCCGA 58.269 37.500 0.00 0.00 0.00 4.55
405 410 5.559035 GCCGCTAGTGATATTTGTAAAGCTG 60.559 44.000 4.44 0.00 0.00 4.24
417 422 1.409064 CTGAACTGGCCGCTAGTGATA 59.591 52.381 10.50 0.00 0.00 2.15
418 423 0.176680 CTGAACTGGCCGCTAGTGAT 59.823 55.000 10.50 0.00 0.00 3.06
419 424 1.591703 CTGAACTGGCCGCTAGTGA 59.408 57.895 10.50 0.00 0.00 3.41
420 425 2.103042 GCTGAACTGGCCGCTAGTG 61.103 63.158 10.50 0.00 0.00 2.74
422 427 1.812922 CAGCTGAACTGGCCGCTAG 60.813 63.158 8.42 1.54 43.19 3.42
423 428 2.265739 CAGCTGAACTGGCCGCTA 59.734 61.111 8.42 0.00 43.19 4.26
432 437 3.084039 TCCAATGACAATCCAGCTGAAC 58.916 45.455 17.39 0.25 0.00 3.18
433 438 3.438216 TCCAATGACAATCCAGCTGAA 57.562 42.857 17.39 0.00 0.00 3.02
434 439 3.657398 ATCCAATGACAATCCAGCTGA 57.343 42.857 17.39 1.21 0.00 4.26
436 441 5.950023 AGATAATCCAATGACAATCCAGCT 58.050 37.500 0.00 0.00 0.00 4.24
437 442 7.201591 CGATAGATAATCCAATGACAATCCAGC 60.202 40.741 0.00 0.00 39.76 4.85
438 443 7.821359 ACGATAGATAATCCAATGACAATCCAG 59.179 37.037 0.00 0.00 41.38 3.86
439 444 7.603784 CACGATAGATAATCCAATGACAATCCA 59.396 37.037 0.00 0.00 41.38 3.41
440 445 7.413438 GCACGATAGATAATCCAATGACAATCC 60.413 40.741 0.00 0.00 41.38 3.01
441 446 7.118245 TGCACGATAGATAATCCAATGACAATC 59.882 37.037 0.00 0.00 41.38 2.67
442 447 6.936335 TGCACGATAGATAATCCAATGACAAT 59.064 34.615 0.00 0.00 41.38 2.71
444 449 5.852827 TGCACGATAGATAATCCAATGACA 58.147 37.500 0.00 0.00 41.38 3.58
446 451 6.369615 CACATGCACGATAGATAATCCAATGA 59.630 38.462 0.00 0.00 41.38 2.57
447 452 6.148315 ACACATGCACGATAGATAATCCAATG 59.852 38.462 0.00 0.00 41.38 2.82
449 454 5.610398 ACACATGCACGATAGATAATCCAA 58.390 37.500 0.00 0.00 41.38 3.53
451 456 4.324669 CGACACATGCACGATAGATAATCC 59.675 45.833 0.00 0.00 41.38 3.01
452 457 4.917998 ACGACACATGCACGATAGATAATC 59.082 41.667 12.34 0.00 41.38 1.75
453 458 4.871513 ACGACACATGCACGATAGATAAT 58.128 39.130 12.34 0.00 41.38 1.28
454 459 4.301637 ACGACACATGCACGATAGATAA 57.698 40.909 12.34 0.00 41.38 1.75
457 462 2.163613 AGAACGACACATGCACGATAGA 59.836 45.455 12.34 0.00 41.38 1.98
458 463 2.279921 CAGAACGACACATGCACGATAG 59.720 50.000 12.34 0.00 46.19 2.08
459 464 2.258755 CAGAACGACACATGCACGATA 58.741 47.619 12.34 0.00 0.00 2.92
460 465 1.070821 CAGAACGACACATGCACGAT 58.929 50.000 12.34 2.29 0.00 3.73
461 466 1.556591 GCAGAACGACACATGCACGA 61.557 55.000 12.34 0.00 38.54 4.35
462 467 1.154599 GCAGAACGACACATGCACG 60.155 57.895 0.00 0.00 38.54 5.34
463 468 1.207593 GGCAGAACGACACATGCAC 59.792 57.895 0.00 0.00 40.46 4.57
464 469 0.817229 TTGGCAGAACGACACATGCA 60.817 50.000 0.00 0.00 40.46 3.96
465 470 0.310543 TTTGGCAGAACGACACATGC 59.689 50.000 0.00 0.00 37.95 4.06
466 471 1.603802 ACTTTGGCAGAACGACACATG 59.396 47.619 0.00 0.00 25.30 3.21
467 472 1.873591 GACTTTGGCAGAACGACACAT 59.126 47.619 0.00 0.00 25.30 3.21
468 473 1.295792 GACTTTGGCAGAACGACACA 58.704 50.000 0.00 0.00 25.30 3.72
469 474 0.232303 CGACTTTGGCAGAACGACAC 59.768 55.000 0.00 0.00 25.30 3.67
470 475 0.179094 ACGACTTTGGCAGAACGACA 60.179 50.000 10.22 0.00 32.93 4.35
471 476 0.507358 GACGACTTTGGCAGAACGAC 59.493 55.000 10.22 2.37 32.93 4.34
472 477 0.599204 GGACGACTTTGGCAGAACGA 60.599 55.000 10.22 0.00 32.93 3.85
473 478 0.878523 TGGACGACTTTGGCAGAACG 60.879 55.000 0.00 0.00 34.09 3.95
474 479 1.197721 CATGGACGACTTTGGCAGAAC 59.802 52.381 0.00 0.00 0.00 3.01
475 480 1.071542 TCATGGACGACTTTGGCAGAA 59.928 47.619 0.00 0.00 0.00 3.02
476 481 0.684535 TCATGGACGACTTTGGCAGA 59.315 50.000 0.00 0.00 0.00 4.26
477 482 1.466167 CTTCATGGACGACTTTGGCAG 59.534 52.381 0.00 0.00 0.00 4.85
478 483 1.202758 ACTTCATGGACGACTTTGGCA 60.203 47.619 0.00 0.00 0.00 4.92
479 484 1.523758 ACTTCATGGACGACTTTGGC 58.476 50.000 0.00 0.00 0.00 4.52
480 485 4.332819 GGAATACTTCATGGACGACTTTGG 59.667 45.833 0.00 0.00 0.00 3.28
481 486 4.332819 GGGAATACTTCATGGACGACTTTG 59.667 45.833 0.00 0.00 0.00 2.77
485 490 3.492829 GGAGGGAATACTTCATGGACGAC 60.493 52.174 0.00 0.00 0.00 4.34
486 491 2.698797 GGAGGGAATACTTCATGGACGA 59.301 50.000 0.00 0.00 0.00 4.20
487 492 2.545952 CGGAGGGAATACTTCATGGACG 60.546 54.545 0.00 0.00 0.00 4.79
488 493 2.434702 ACGGAGGGAATACTTCATGGAC 59.565 50.000 0.00 0.00 0.00 4.02
490 495 3.560636 AACGGAGGGAATACTTCATGG 57.439 47.619 0.00 0.00 0.00 3.66
491 496 4.941263 TGAAAACGGAGGGAATACTTCATG 59.059 41.667 0.00 0.00 0.00 3.07
492 497 5.174037 TGAAAACGGAGGGAATACTTCAT 57.826 39.130 0.00 0.00 0.00 2.57
493 498 4.627284 TGAAAACGGAGGGAATACTTCA 57.373 40.909 0.00 0.00 0.00 3.02
494 499 5.952526 TTTGAAAACGGAGGGAATACTTC 57.047 39.130 0.00 0.00 0.00 3.01
495 500 7.173032 AGTATTTGAAAACGGAGGGAATACTT 58.827 34.615 0.00 0.00 36.14 2.24
497 502 6.997239 AGTATTTGAAAACGGAGGGAATAC 57.003 37.500 0.00 0.00 0.00 1.89
499 504 9.689501 TTATAAGTATTTGAAAACGGAGGGAAT 57.310 29.630 0.00 0.00 0.00 3.01
500 505 9.689501 ATTATAAGTATTTGAAAACGGAGGGAA 57.310 29.630 0.00 0.00 0.00 3.97
501 506 9.689501 AATTATAAGTATTTGAAAACGGAGGGA 57.310 29.630 0.00 0.00 0.00 4.20
530 535 8.333235 TGTAGCCCCTTATTGAAATCTCTAAAA 58.667 33.333 0.00 0.00 0.00 1.52
531 536 7.867921 TGTAGCCCCTTATTGAAATCTCTAAA 58.132 34.615 0.00 0.00 0.00 1.85
532 537 7.446106 TGTAGCCCCTTATTGAAATCTCTAA 57.554 36.000 0.00 0.00 0.00 2.10
533 538 7.633018 ATGTAGCCCCTTATTGAAATCTCTA 57.367 36.000 0.00 0.00 0.00 2.43
534 539 5.975988 TGTAGCCCCTTATTGAAATCTCT 57.024 39.130 0.00 0.00 0.00 3.10
535 540 8.103305 TCATATGTAGCCCCTTATTGAAATCTC 58.897 37.037 1.90 0.00 0.00 2.75
536 541 7.988937 TCATATGTAGCCCCTTATTGAAATCT 58.011 34.615 1.90 0.00 0.00 2.40
537 542 8.635765 TTCATATGTAGCCCCTTATTGAAATC 57.364 34.615 1.90 0.00 0.00 2.17
539 544 7.811282 TCTTCATATGTAGCCCCTTATTGAAA 58.189 34.615 1.90 0.00 0.00 2.69
540 545 7.387265 TCTTCATATGTAGCCCCTTATTGAA 57.613 36.000 1.90 0.00 0.00 2.69
541 546 7.387265 TTCTTCATATGTAGCCCCTTATTGA 57.613 36.000 1.90 0.00 0.00 2.57
542 547 8.463930 TTTTCTTCATATGTAGCCCCTTATTG 57.536 34.615 1.90 0.00 0.00 1.90
543 548 9.660544 ATTTTTCTTCATATGTAGCCCCTTATT 57.339 29.630 1.90 0.00 0.00 1.40
547 552 6.672593 TCATTTTTCTTCATATGTAGCCCCT 58.327 36.000 1.90 0.00 0.00 4.79
548 553 6.959639 TCATTTTTCTTCATATGTAGCCCC 57.040 37.500 1.90 0.00 0.00 5.80
549 554 8.632679 TCATTCATTTTTCTTCATATGTAGCCC 58.367 33.333 1.90 0.00 0.00 5.19
642 769 4.221041 CGGAGGGAGTACTCTCTTTCTTTT 59.779 45.833 26.01 2.13 41.29 2.27
643 770 3.764972 CGGAGGGAGTACTCTCTTTCTTT 59.235 47.826 26.01 2.93 41.29 2.52
644 771 3.245336 ACGGAGGGAGTACTCTCTTTCTT 60.245 47.826 26.01 12.42 41.29 2.52
645 772 2.309458 ACGGAGGGAGTACTCTCTTTCT 59.691 50.000 26.01 13.27 41.29 2.52
646 773 2.684374 GACGGAGGGAGTACTCTCTTTC 59.316 54.545 26.01 18.96 41.29 2.62
647 774 2.621147 GGACGGAGGGAGTACTCTCTTT 60.621 54.545 26.01 13.67 41.29 2.52
648 775 1.064537 GGACGGAGGGAGTACTCTCTT 60.065 57.143 26.01 10.98 41.29 2.85
649 776 0.547553 GGACGGAGGGAGTACTCTCT 59.452 60.000 25.60 25.60 44.55 3.10
650 777 0.255318 TGGACGGAGGGAGTACTCTC 59.745 60.000 21.88 18.89 42.48 3.20
651 778 0.256464 CTGGACGGAGGGAGTACTCT 59.744 60.000 21.88 3.41 37.63 3.24
652 779 0.255318 TCTGGACGGAGGGAGTACTC 59.745 60.000 14.87 14.87 36.76 2.59
653 780 0.702902 TTCTGGACGGAGGGAGTACT 59.297 55.000 0.00 0.00 0.00 2.73
654 781 1.553706 TTTCTGGACGGAGGGAGTAC 58.446 55.000 0.00 0.00 0.00 2.73
676 2954 9.415544 CTTCATTTTCTCCATTTTTAGGACAAG 57.584 33.333 0.00 0.00 0.00 3.16
684 2962 8.082242 CGGAAGTACTTCATTTTCTCCATTTTT 58.918 33.333 31.30 0.00 41.20 1.94
686 2964 6.715264 ACGGAAGTACTTCATTTTCTCCATTT 59.285 34.615 31.30 2.72 46.88 2.32
705 2983 1.235724 GGTCTGGGTTCAAACGGAAG 58.764 55.000 0.00 0.00 35.82 3.46
706 2984 0.533308 CGGTCTGGGTTCAAACGGAA 60.533 55.000 0.00 0.00 0.00 4.30
707 2985 1.070105 CGGTCTGGGTTCAAACGGA 59.930 57.895 0.00 0.00 0.00 4.69
708 2986 1.964373 CCGGTCTGGGTTCAAACGG 60.964 63.158 0.00 0.00 0.00 4.44
709 2987 3.650369 CCGGTCTGGGTTCAAACG 58.350 61.111 0.00 0.00 0.00 3.60
728 3307 4.803329 AGATGCCCCTACATTTCATCTT 57.197 40.909 0.00 0.00 40.43 2.40
732 3311 4.023291 GGAAAAGATGCCCCTACATTTCA 58.977 43.478 0.00 0.00 0.00 2.69
740 3319 1.614317 CGAACTGGAAAAGATGCCCCT 60.614 52.381 0.00 0.00 0.00 4.79
773 3353 1.317613 GTGGTCTGTGATTGGTGCAA 58.682 50.000 0.00 0.00 0.00 4.08
925 3519 1.001706 TGGAGAGTGAACGACTGAACG 60.002 52.381 0.00 0.00 33.83 3.95
926 3520 2.667137 CTGGAGAGTGAACGACTGAAC 58.333 52.381 0.00 0.00 33.83 3.18
927 3521 1.000163 GCTGGAGAGTGAACGACTGAA 60.000 52.381 0.00 0.00 33.83 3.02
928 3522 0.598562 GCTGGAGAGTGAACGACTGA 59.401 55.000 0.00 0.00 33.83 3.41
929 3523 0.730834 CGCTGGAGAGTGAACGACTG 60.731 60.000 0.00 0.00 33.83 3.51
930 3524 1.581954 CGCTGGAGAGTGAACGACT 59.418 57.895 0.00 0.00 37.76 4.18
931 3525 2.089349 GCGCTGGAGAGTGAACGAC 61.089 63.158 0.00 0.00 0.00 4.34
932 3526 2.258591 GCGCTGGAGAGTGAACGA 59.741 61.111 0.00 0.00 0.00 3.85
973 3567 0.609406 CGTGGGAGACAGAGAGTGGA 60.609 60.000 0.00 0.00 0.00 4.02
974 3568 1.886585 CGTGGGAGACAGAGAGTGG 59.113 63.158 0.00 0.00 0.00 4.00
976 3570 1.979693 GGCGTGGGAGACAGAGAGT 60.980 63.158 0.00 0.00 0.00 3.24
978 3572 1.679305 GAGGCGTGGGAGACAGAGA 60.679 63.158 0.00 0.00 0.00 3.10
979 3573 1.254284 AAGAGGCGTGGGAGACAGAG 61.254 60.000 0.00 0.00 0.00 3.35
980 3574 0.039180 TAAGAGGCGTGGGAGACAGA 59.961 55.000 0.00 0.00 0.00 3.41
981 3575 1.067821 GATAAGAGGCGTGGGAGACAG 59.932 57.143 0.00 0.00 0.00 3.51
982 3576 1.112113 GATAAGAGGCGTGGGAGACA 58.888 55.000 0.00 0.00 0.00 3.41
983 3577 0.030908 CGATAAGAGGCGTGGGAGAC 59.969 60.000 0.00 0.00 0.00 3.36
1312 3916 0.254462 CTTCCCCTTCTTCTCCTGGC 59.746 60.000 0.00 0.00 0.00 4.85
1315 3919 2.114506 TCCTTCTTCCCCTTCTTCTCCT 59.885 50.000 0.00 0.00 0.00 3.69
1332 3936 2.452505 CTCCTTCTCGTCCTTCTCCTT 58.547 52.381 0.00 0.00 0.00 3.36
1335 3939 2.131776 TCCTCCTTCTCGTCCTTCTC 57.868 55.000 0.00 0.00 0.00 2.87
1338 3942 2.452505 CTCTTCCTCCTTCTCGTCCTT 58.547 52.381 0.00 0.00 0.00 3.36
1343 3947 1.819905 GCCCTCTTCCTCCTTCTCG 59.180 63.158 0.00 0.00 0.00 4.04
1344 3948 1.681486 CCGCCCTCTTCCTCCTTCTC 61.681 65.000 0.00 0.00 0.00 2.87
1345 3949 1.687493 CCGCCCTCTTCCTCCTTCT 60.687 63.158 0.00 0.00 0.00 2.85
1346 3950 2.904131 CCGCCCTCTTCCTCCTTC 59.096 66.667 0.00 0.00 0.00 3.46
1347 3951 3.403558 GCCGCCCTCTTCCTCCTT 61.404 66.667 0.00 0.00 0.00 3.36
1412 4016 4.764771 CCCCCTACGACCCCGACA 62.765 72.222 0.00 0.00 39.50 4.35
1536 4140 0.877071 TAGTGCAAAGCAAGCAGAGC 59.123 50.000 0.00 0.00 43.63 4.09
1596 4203 4.556501 GCGGAATTCACAAGACATTTCACA 60.557 41.667 7.93 0.00 0.00 3.58
1610 4217 4.814234 AGCTATATTTGAACGCGGAATTCA 59.186 37.500 12.47 8.99 34.27 2.57
1617 4224 6.363626 AGAATCACTAGCTATATTTGAACGCG 59.636 38.462 3.53 3.53 0.00 6.01
1661 4278 0.463620 TGCTATCATGCGCCACTACA 59.536 50.000 4.18 0.00 35.36 2.74
1682 4299 1.701847 AGTTCTGCAGTCCAATGGTCT 59.298 47.619 14.67 0.00 0.00 3.85
1683 4300 2.191128 AGTTCTGCAGTCCAATGGTC 57.809 50.000 14.67 0.00 0.00 4.02
1684 4301 2.616510 GCTAGTTCTGCAGTCCAATGGT 60.617 50.000 14.67 0.00 0.00 3.55
1686 4303 2.012673 GGCTAGTTCTGCAGTCCAATG 58.987 52.381 14.67 2.57 0.00 2.82
1687 4304 1.630369 TGGCTAGTTCTGCAGTCCAAT 59.370 47.619 14.67 1.05 0.00 3.16
1689 4306 1.279496 ATGGCTAGTTCTGCAGTCCA 58.721 50.000 14.67 12.26 0.00 4.02
1692 4309 2.038952 TGTGAATGGCTAGTTCTGCAGT 59.961 45.455 14.67 0.00 0.00 4.40
1694 4311 2.857186 TGTGAATGGCTAGTTCTGCA 57.143 45.000 0.00 0.00 0.00 4.41
1704 4321 4.082895 GGAATCAGCAGATATGTGAATGGC 60.083 45.833 3.61 0.00 33.08 4.40
1706 4323 5.763698 ACAGGAATCAGCAGATATGTGAATG 59.236 40.000 3.61 1.83 33.08 2.67
1727 4344 7.829725 TGAAGGATTTCATAATGGTCAAACAG 58.170 34.615 0.00 0.00 38.37 3.16
1732 4349 9.527157 TTTACTTGAAGGATTTCATAATGGTCA 57.473 29.630 0.00 0.00 42.60 4.02
1733 4350 9.788960 GTTTACTTGAAGGATTTCATAATGGTC 57.211 33.333 0.00 0.00 42.60 4.02
1734 4351 8.458843 CGTTTACTTGAAGGATTTCATAATGGT 58.541 33.333 0.00 0.00 42.60 3.55
1735 4352 7.432252 GCGTTTACTTGAAGGATTTCATAATGG 59.568 37.037 0.00 0.00 42.60 3.16
1741 4358 4.394729 AGGCGTTTACTTGAAGGATTTCA 58.605 39.130 0.00 0.00 41.44 2.69
1748 4365 4.274950 TCCAAAGAAGGCGTTTACTTGAAG 59.725 41.667 0.00 0.00 0.00 3.02
1788 4406 7.880160 AGCCTGTTCATGCAAAGTAATATAA 57.120 32.000 0.00 0.00 0.00 0.98
1866 4484 9.268282 AGGAGTAAGGTTGATAACTCAAGAATA 57.732 33.333 3.97 0.00 41.96 1.75
1867 4485 8.152023 AGGAGTAAGGTTGATAACTCAAGAAT 57.848 34.615 3.97 0.00 41.96 2.40
1873 4491 6.834969 AGGTAGAGGAGTAAGGTTGATAACTC 59.165 42.308 0.00 0.00 38.08 3.01
1888 4506 3.368948 GCCTTGACAAGAAGGTAGAGGAG 60.369 52.174 16.99 0.00 44.04 3.69
1891 4509 3.971245 AGCCTTGACAAGAAGGTAGAG 57.029 47.619 16.99 0.00 44.04 2.43
1910 4633 9.838339 AGTAGTTTAGGTGGAAATGATCATAAG 57.162 33.333 9.04 0.00 0.00 1.73
1916 4639 8.265764 GGACTAAGTAGTTTAGGTGGAAATGAT 58.734 37.037 0.00 0.00 42.57 2.45
1935 4658 7.581213 AGATCAAGATCTGTAGTGGACTAAG 57.419 40.000 11.57 0.00 45.77 2.18
1936 4659 7.397476 ACAAGATCAAGATCTGTAGTGGACTAA 59.603 37.037 12.96 0.00 46.75 2.24
1939 4662 5.971763 ACAAGATCAAGATCTGTAGTGGAC 58.028 41.667 12.96 0.00 46.75 4.02
1952 4675 8.970859 ACCCTAAATTCTATGACAAGATCAAG 57.029 34.615 0.00 0.00 41.93 3.02
1953 4676 9.177608 CAACCCTAAATTCTATGACAAGATCAA 57.822 33.333 0.00 0.00 41.93 2.57
1955 4678 7.283127 TGCAACCCTAAATTCTATGACAAGATC 59.717 37.037 0.00 0.00 0.00 2.75
1958 4681 6.757897 TGCAACCCTAAATTCTATGACAAG 57.242 37.500 0.00 0.00 0.00 3.16
1959 4682 6.719370 AGTTGCAACCCTAAATTCTATGACAA 59.281 34.615 25.62 0.00 0.00 3.18
1960 4683 6.245408 AGTTGCAACCCTAAATTCTATGACA 58.755 36.000 25.62 0.00 0.00 3.58
1961 4684 6.759497 AGTTGCAACCCTAAATTCTATGAC 57.241 37.500 25.62 0.00 0.00 3.06
1962 4685 7.309744 CCAAAGTTGCAACCCTAAATTCTATGA 60.310 37.037 25.62 0.00 0.00 2.15
1963 4686 6.813152 CCAAAGTTGCAACCCTAAATTCTATG 59.187 38.462 25.62 7.83 0.00 2.23
1964 4687 6.723977 TCCAAAGTTGCAACCCTAAATTCTAT 59.276 34.615 25.62 0.00 0.00 1.98
1966 4689 4.898861 TCCAAAGTTGCAACCCTAAATTCT 59.101 37.500 25.62 0.84 0.00 2.40
1967 4690 5.208463 TCCAAAGTTGCAACCCTAAATTC 57.792 39.130 25.62 0.00 0.00 2.17
1968 4691 5.823861 ATCCAAAGTTGCAACCCTAAATT 57.176 34.783 25.62 9.71 0.00 1.82
1969 4692 5.823861 AATCCAAAGTTGCAACCCTAAAT 57.176 34.783 25.62 11.61 0.00 1.40
1995 4938 7.377398 TGAATCAAACAAACACCATCATTAGG 58.623 34.615 0.00 0.00 0.00 2.69
2004 4947 5.262588 AGAACCTGAATCAAACAAACACC 57.737 39.130 0.00 0.00 0.00 4.16
2072 5015 7.840716 ACCATAATAGTACCAGTAACACTACCA 59.159 37.037 0.00 0.00 0.00 3.25
2135 5078 6.563381 GCAGCAGAATGAAAACAGAAATGTTG 60.563 38.462 0.00 0.00 39.69 3.33
2158 5101 4.538746 TTGAATGAGAAAATGCATGGCA 57.461 36.364 0.00 0.00 44.86 4.92
2160 5103 7.812648 ACAAAATTGAATGAGAAAATGCATGG 58.187 30.769 0.00 0.00 0.00 3.66
2161 5104 7.686529 CGACAAAATTGAATGAGAAAATGCATG 59.313 33.333 0.00 0.00 0.00 4.06
2162 5105 7.599621 TCGACAAAATTGAATGAGAAAATGCAT 59.400 29.630 0.00 0.00 0.00 3.96
2177 5120 7.848051 CAGCTAGCTATAAAGTCGACAAAATTG 59.152 37.037 18.86 9.30 0.00 2.32
2180 5123 5.291128 GCAGCTAGCTATAAAGTCGACAAAA 59.709 40.000 18.86 1.96 41.15 2.44
2186 5129 2.320367 CGGCAGCTAGCTATAAAGTCG 58.680 52.381 18.86 14.32 44.79 4.18
2374 5521 2.750948 GACTGAAGTCAAGCCGTACAA 58.249 47.619 5.58 0.00 44.18 2.41
2432 5579 8.424918 TGCCAAAATAAAATAAGGAAGTGTGAA 58.575 29.630 0.00 0.00 0.00 3.18
2435 5582 9.435688 GAATGCCAAAATAAAATAAGGAAGTGT 57.564 29.630 0.00 0.00 0.00 3.55
2671 5919 6.446318 TCACAAAGGAATGCTCAATTTGTAC 58.554 36.000 1.71 0.00 39.28 2.90
2868 6117 9.670719 GAAAAGGTGAACTAAGAAAAGATCAAG 57.329 33.333 0.00 0.00 31.07 3.02
3071 6722 8.287350 ACTCCCTCTGTAAAGTAATATAGGACA 58.713 37.037 0.00 0.00 0.00 4.02
3204 6859 5.144100 TGGATTAAGGTGTCCACATTTTGT 58.856 37.500 2.43 0.00 39.51 2.83
3212 6867 4.506625 CCTTGAGTTGGATTAAGGTGTCCA 60.507 45.833 0.00 0.00 42.55 4.02
3529 7190 0.111253 AGCTGGTTGTTTCCTCCCAG 59.889 55.000 0.00 0.00 45.87 4.45
3609 7270 5.957796 CGACAAAAGCTTAATTACCTTAGCG 59.042 40.000 0.00 0.00 0.00 4.26
3719 7383 1.880027 AGCATCCTGGAAAACAACGAC 59.120 47.619 0.00 0.00 0.00 4.34
3722 7386 4.846779 TTACAGCATCCTGGAAAACAAC 57.153 40.909 0.00 0.00 38.95 3.32
4002 7668 1.892468 CGTGTCGACTACTGGTAAGC 58.108 55.000 17.92 0.00 0.00 3.09
4025 7691 3.284617 TGCTTCCATCACATGAAGGATG 58.715 45.455 6.67 9.94 41.03 3.51
4035 7701 1.237285 ACGCCAACTGCTTCCATCAC 61.237 55.000 0.00 0.00 38.05 3.06
4138 7804 2.924421 GCTCTTAAGCTACAAGCCCAT 58.076 47.619 0.00 0.00 43.77 4.00
4163 7829 2.178890 CGGCTGGAGATGCTCTTGC 61.179 63.158 0.00 0.00 40.20 4.01
4164 7830 2.178890 GCGGCTGGAGATGCTCTTG 61.179 63.158 0.00 0.00 0.00 3.02
4165 7831 2.188994 GCGGCTGGAGATGCTCTT 59.811 61.111 0.00 0.00 0.00 2.85
4166 7832 4.218578 CGCGGCTGGAGATGCTCT 62.219 66.667 0.00 0.00 0.00 4.09
4183 7849 3.978571 GAGAGGCTTCGTTGGGGGC 62.979 68.421 0.00 0.00 0.00 5.80
4184 7850 2.269241 GAGAGGCTTCGTTGGGGG 59.731 66.667 0.00 0.00 0.00 5.40
4185 7851 1.078848 CTGAGAGGCTTCGTTGGGG 60.079 63.158 0.00 0.00 0.00 4.96
4186 7852 1.078848 CCTGAGAGGCTTCGTTGGG 60.079 63.158 0.00 0.00 0.00 4.12
4187 7853 0.671781 CACCTGAGAGGCTTCGTTGG 60.672 60.000 0.00 0.00 39.63 3.77
4188 7854 0.318441 TCACCTGAGAGGCTTCGTTG 59.682 55.000 0.00 0.00 39.63 4.10
4189 7855 0.318762 GTCACCTGAGAGGCTTCGTT 59.681 55.000 0.00 0.00 39.63 3.85
4190 7856 0.540830 AGTCACCTGAGAGGCTTCGT 60.541 55.000 0.00 0.00 39.63 3.85
4191 7857 0.605589 AAGTCACCTGAGAGGCTTCG 59.394 55.000 0.00 0.00 39.63 3.79
4192 7858 2.849294 AAAGTCACCTGAGAGGCTTC 57.151 50.000 0.00 0.00 39.63 3.86
4193 7859 2.548920 CGAAAAGTCACCTGAGAGGCTT 60.549 50.000 0.00 0.00 39.63 4.35
4194 7860 1.001406 CGAAAAGTCACCTGAGAGGCT 59.999 52.381 0.00 0.00 39.63 4.58
4195 7861 1.433534 CGAAAAGTCACCTGAGAGGC 58.566 55.000 0.00 0.00 39.63 4.70
4196 7862 1.941668 GCCGAAAAGTCACCTGAGAGG 60.942 57.143 0.00 0.00 42.49 3.69
4197 7863 1.433534 GCCGAAAAGTCACCTGAGAG 58.566 55.000 0.00 0.00 0.00 3.20
4198 7864 0.034896 GGCCGAAAAGTCACCTGAGA 59.965 55.000 0.00 0.00 0.00 3.27
4199 7865 1.291877 CGGCCGAAAAGTCACCTGAG 61.292 60.000 24.07 0.00 0.00 3.35
4200 7866 1.301401 CGGCCGAAAAGTCACCTGA 60.301 57.895 24.07 0.00 0.00 3.86
4201 7867 2.966309 GCGGCCGAAAAGTCACCTG 61.966 63.158 33.48 0.00 0.00 4.00
4202 7868 2.668550 GCGGCCGAAAAGTCACCT 60.669 61.111 33.48 0.00 0.00 4.00
4203 7869 2.668550 AGCGGCCGAAAAGTCACC 60.669 61.111 33.48 7.54 0.00 4.02
4204 7870 2.556287 CAGCGGCCGAAAAGTCAC 59.444 61.111 33.48 8.41 0.00 3.67
4205 7871 2.668212 CCAGCGGCCGAAAAGTCA 60.668 61.111 33.48 0.00 0.00 3.41
4206 7872 4.103103 GCCAGCGGCCGAAAAGTC 62.103 66.667 33.48 10.20 44.06 3.01
4229 7895 0.883370 GGACGCGACTGGACCTTTTT 60.883 55.000 15.93 0.00 0.00 1.94
4230 7896 1.301479 GGACGCGACTGGACCTTTT 60.301 57.895 15.93 0.00 0.00 2.27
4231 7897 2.342648 GGACGCGACTGGACCTTT 59.657 61.111 15.93 0.00 0.00 3.11
4232 7898 3.692406 GGGACGCGACTGGACCTT 61.692 66.667 15.93 0.00 0.00 3.50
4235 7901 4.436998 CTGGGGACGCGACTGGAC 62.437 72.222 15.93 0.00 0.00 4.02
4248 7914 0.246360 GCGAAAAATGAACCCCTGGG 59.754 55.000 5.50 5.50 42.03 4.45
4249 7915 0.246360 GGCGAAAAATGAACCCCTGG 59.754 55.000 0.00 0.00 0.00 4.45
4250 7916 0.109319 CGGCGAAAAATGAACCCCTG 60.109 55.000 0.00 0.00 0.00 4.45
4251 7917 1.248101 CCGGCGAAAAATGAACCCCT 61.248 55.000 9.30 0.00 0.00 4.79
4252 7918 1.214325 CCGGCGAAAAATGAACCCC 59.786 57.895 9.30 0.00 0.00 4.95
4253 7919 0.815095 ATCCGGCGAAAAATGAACCC 59.185 50.000 9.30 0.00 0.00 4.11
4254 7920 1.531058 CGATCCGGCGAAAAATGAACC 60.531 52.381 9.30 0.00 0.00 3.62
4255 7921 1.395608 TCGATCCGGCGAAAAATGAAC 59.604 47.619 9.30 0.00 37.35 3.18
4256 7922 1.663643 CTCGATCCGGCGAAAAATGAA 59.336 47.619 9.30 0.00 40.13 2.57
4257 7923 1.286501 CTCGATCCGGCGAAAAATGA 58.713 50.000 9.30 0.00 40.13 2.57
4258 7924 0.316196 GCTCGATCCGGCGAAAAATG 60.316 55.000 9.30 0.00 40.13 2.32
4259 7925 0.462047 AGCTCGATCCGGCGAAAAAT 60.462 50.000 9.30 0.00 40.13 1.82
4260 7926 1.079405 AGCTCGATCCGGCGAAAAA 60.079 52.632 9.30 0.00 40.13 1.94
4261 7927 1.809619 CAGCTCGATCCGGCGAAAA 60.810 57.895 9.30 0.00 40.13 2.29
4262 7928 2.202743 CAGCTCGATCCGGCGAAA 60.203 61.111 9.30 0.00 40.13 3.46
4263 7929 2.220615 TTTCAGCTCGATCCGGCGAA 62.221 55.000 9.30 0.00 40.13 4.70
4264 7930 2.016393 ATTTCAGCTCGATCCGGCGA 62.016 55.000 9.30 0.00 38.74 5.54
4265 7931 1.154205 AATTTCAGCTCGATCCGGCG 61.154 55.000 0.00 0.00 0.00 6.46
4266 7932 0.305922 CAATTTCAGCTCGATCCGGC 59.694 55.000 0.00 0.00 0.00 6.13
4267 7933 0.940126 CCAATTTCAGCTCGATCCGG 59.060 55.000 0.00 0.00 0.00 5.14
4268 7934 0.305922 GCCAATTTCAGCTCGATCCG 59.694 55.000 0.00 0.00 0.00 4.18
4269 7935 0.305922 CGCCAATTTCAGCTCGATCC 59.694 55.000 0.00 0.00 0.00 3.36
4270 7936 0.316524 GCGCCAATTTCAGCTCGATC 60.317 55.000 0.00 0.00 0.00 3.69
4271 7937 1.718757 GGCGCCAATTTCAGCTCGAT 61.719 55.000 24.80 0.00 0.00 3.59
4272 7938 2.398554 GGCGCCAATTTCAGCTCGA 61.399 57.895 24.80 0.00 0.00 4.04
4273 7939 2.100991 GGCGCCAATTTCAGCTCG 59.899 61.111 24.80 0.00 0.00 5.03
4274 7940 2.100991 CGGCGCCAATTTCAGCTC 59.899 61.111 28.98 0.00 0.00 4.09
4275 7941 3.443045 CCGGCGCCAATTTCAGCT 61.443 61.111 28.98 0.00 0.00 4.24
4277 7943 4.834892 CGCCGGCGCCAATTTCAG 62.835 66.667 38.48 5.99 0.00 3.02
4291 7957 4.419921 ATTCGGGTTGGGTCCGCC 62.420 66.667 0.00 0.00 46.43 6.13
4292 7958 2.822701 GATTCGGGTTGGGTCCGC 60.823 66.667 0.00 0.00 46.43 5.54
4294 7960 2.124860 CGGATTCGGGTTGGGTCC 60.125 66.667 0.00 0.00 0.00 4.46
4340 8006 1.057526 CGATGCTTTCGCGCGAAAAA 61.058 50.000 44.71 37.28 42.61 1.94
4341 8007 1.508954 CGATGCTTTCGCGCGAAAA 60.509 52.632 44.71 35.78 42.61 2.29
4342 8008 2.095656 CGATGCTTTCGCGCGAAA 59.904 55.556 43.79 43.79 41.69 3.46
4350 8016 3.056313 GCTGGCCCACGATGCTTTC 62.056 63.158 0.00 0.00 0.00 2.62
4351 8017 3.064324 GCTGGCCCACGATGCTTT 61.064 61.111 0.00 0.00 0.00 3.51
4370 8036 2.574736 GAGTCGAGTCGCTGACGC 60.575 66.667 7.92 0.00 40.05 5.19
4371 8037 2.276120 CGAGTCGAGTCGCTGACG 60.276 66.667 27.88 6.06 40.05 4.35
4377 8043 1.296288 CGAGAAGCGAGTCGAGTCG 60.296 63.158 32.92 32.92 44.57 4.18
4378 8044 1.581657 GCGAGAAGCGAGTCGAGTC 60.582 63.158 18.61 10.37 44.57 3.36
4379 8045 2.481464 GCGAGAAGCGAGTCGAGT 59.519 61.111 18.61 1.74 44.57 4.18
4388 8054 3.546397 GACGAAGCCGCGAGAAGC 61.546 66.667 8.23 1.15 43.95 3.86
4389 8055 3.241059 CGACGAAGCCGCGAGAAG 61.241 66.667 8.23 0.00 39.95 2.85
4390 8056 3.940975 GACGACGAAGCCGCGAGAA 62.941 63.158 8.23 0.00 39.95 2.87
4391 8057 4.456253 GACGACGAAGCCGCGAGA 62.456 66.667 8.23 0.00 39.95 4.04
4395 8061 3.701604 ATGAGGACGACGAAGCCGC 62.702 63.158 0.00 2.40 39.95 6.53
4396 8062 1.586564 GATGAGGACGACGAAGCCG 60.587 63.158 0.00 0.00 42.50 5.52
4397 8063 1.586564 CGATGAGGACGACGAAGCC 60.587 63.158 0.00 0.00 0.00 4.35
4398 8064 2.224885 GCGATGAGGACGACGAAGC 61.225 63.158 0.00 0.00 0.00 3.86
4399 8065 1.586564 GGCGATGAGGACGACGAAG 60.587 63.158 0.00 0.00 0.00 3.79
4400 8066 1.989966 GAGGCGATGAGGACGACGAA 61.990 60.000 0.00 0.00 44.04 3.85
4401 8067 2.437895 AGGCGATGAGGACGACGA 60.438 61.111 0.00 0.00 44.04 4.20
4402 8068 2.024871 GAGGCGATGAGGACGACG 59.975 66.667 0.00 0.00 44.04 5.12
4403 8069 2.024871 CGAGGCGATGAGGACGAC 59.975 66.667 0.00 0.00 39.24 4.34
4404 8070 1.592400 AAACGAGGCGATGAGGACGA 61.592 55.000 0.00 0.00 0.00 4.20
4405 8071 1.140407 GAAACGAGGCGATGAGGACG 61.140 60.000 0.00 0.00 0.00 4.79
4406 8072 0.806492 GGAAACGAGGCGATGAGGAC 60.806 60.000 0.00 0.00 0.00 3.85
4407 8073 1.515954 GGAAACGAGGCGATGAGGA 59.484 57.895 0.00 0.00 0.00 3.71
4408 8074 1.521681 GGGAAACGAGGCGATGAGG 60.522 63.158 0.00 0.00 0.00 3.86
4409 8075 4.110493 GGGAAACGAGGCGATGAG 57.890 61.111 0.00 0.00 0.00 2.90
4420 8086 1.988834 ATTGATTCGCCGCGGGAAAC 61.989 55.000 29.38 24.36 37.97 2.78
4421 8087 1.747367 ATTGATTCGCCGCGGGAAA 60.747 52.632 29.38 13.60 37.97 3.13
4422 8088 2.124901 ATTGATTCGCCGCGGGAA 60.125 55.556 29.38 26.61 38.75 3.97
4423 8089 2.894879 CATTGATTCGCCGCGGGA 60.895 61.111 29.38 19.62 0.00 5.14
4424 8090 4.612536 GCATTGATTCGCCGCGGG 62.613 66.667 29.38 17.41 0.00 6.13
4425 8091 4.612536 GGCATTGATTCGCCGCGG 62.613 66.667 24.05 24.05 38.82 6.46
4430 8096 1.274596 CAGCTTTGGCATTGATTCGC 58.725 50.000 0.00 0.00 41.70 4.70
4431 8097 1.274596 GCAGCTTTGGCATTGATTCG 58.725 50.000 0.00 0.00 41.70 3.34
4432 8098 1.997606 GTGCAGCTTTGGCATTGATTC 59.002 47.619 0.03 0.00 44.11 2.52
4433 8099 1.670674 CGTGCAGCTTTGGCATTGATT 60.671 47.619 0.03 0.00 44.11 2.57
4434 8100 0.108992 CGTGCAGCTTTGGCATTGAT 60.109 50.000 0.03 0.00 44.11 2.57
4435 8101 1.286570 CGTGCAGCTTTGGCATTGA 59.713 52.632 0.03 0.00 44.11 2.57
4436 8102 2.377310 GCGTGCAGCTTTGGCATTG 61.377 57.895 0.03 0.00 44.11 2.82
4437 8103 2.048877 GCGTGCAGCTTTGGCATT 60.049 55.556 0.03 0.00 44.11 3.56
4438 8104 4.409218 CGCGTGCAGCTTTGGCAT 62.409 61.111 0.00 0.00 44.11 4.40
4446 8112 2.499732 GTTACAAGCGCGTGCAGC 60.500 61.111 24.79 9.06 46.23 5.25
4447 8113 2.202046 CGTTACAAGCGCGTGCAG 60.202 61.111 24.79 17.34 46.23 4.41
4448 8114 4.362946 GCGTTACAAGCGCGTGCA 62.363 61.111 24.79 7.86 45.36 4.57
4454 8120 3.186047 CTCGGGGCGTTACAAGCG 61.186 66.667 0.00 0.00 35.00 4.68
4455 8121 2.098831 GTCTCGGGGCGTTACAAGC 61.099 63.158 0.00 0.00 0.00 4.01
4456 8122 1.447314 GGTCTCGGGGCGTTACAAG 60.447 63.158 0.00 0.00 0.00 3.16
4457 8123 2.658422 GGTCTCGGGGCGTTACAA 59.342 61.111 0.00 0.00 0.00 2.41
4458 8124 3.751246 CGGTCTCGGGGCGTTACA 61.751 66.667 0.00 0.00 0.00 2.41
4459 8125 3.443045 TCGGTCTCGGGGCGTTAC 61.443 66.667 0.00 0.00 36.95 2.50
4460 8126 3.443045 GTCGGTCTCGGGGCGTTA 61.443 66.667 0.00 0.00 36.95 3.18
4630 8296 9.014297 GTGAATATCCCTCGATTTAAATGGATT 57.986 33.333 18.05 8.11 34.57 3.01
4634 8300 8.239314 CCATGTGAATATCCCTCGATTTAAATG 58.761 37.037 5.17 0.00 0.00 2.32
4643 8309 3.751479 TCACCATGTGAATATCCCTCG 57.249 47.619 0.00 0.00 39.78 4.63
4740 10084 7.343574 GGGATATTTTGTAAGTGGGTTATGGTT 59.656 37.037 0.00 0.00 0.00 3.67
4749 10093 4.261572 CGGCATGGGATATTTTGTAAGTGG 60.262 45.833 0.00 0.00 0.00 4.00
4755 10099 3.096092 ACAACGGCATGGGATATTTTGT 58.904 40.909 0.00 0.00 0.00 2.83
4804 10148 8.819974 CCGAAAAATGATGAAAGAAATTATGGG 58.180 33.333 0.00 0.00 0.00 4.00
4810 10154 6.928520 AGCTCCGAAAAATGATGAAAGAAAT 58.071 32.000 0.00 0.00 0.00 2.17
4811 10155 6.331369 AGCTCCGAAAAATGATGAAAGAAA 57.669 33.333 0.00 0.00 0.00 2.52
4827 10171 2.677836 CGAATTTTTGATGGAGCTCCGA 59.322 45.455 27.43 16.85 39.43 4.55
4846 10190 3.827722 AGGAAGGTCCAAAAATGTTCGA 58.172 40.909 0.00 0.00 39.61 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.