Multiple sequence alignment - TraesCS3B01G437800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G437800 chr3B 100.000 4882 0 0 1 4882 676891681 676896562 0.000000e+00 9016.0
1 TraesCS3B01G437800 chr3B 95.968 248 10 0 3932 4179 676914882 676915129 2.120000e-108 403.0
2 TraesCS3B01G437800 chr3B 93.976 249 15 0 3931 4179 77313095 77312847 1.280000e-100 377.0
3 TraesCS3B01G437800 chr3B 79.605 152 24 5 591 735 156779641 156779792 8.650000e-18 102.0
4 TraesCS3B01G437800 chr3B 98.246 57 1 0 4177 4233 676895830 676895886 3.110000e-17 100.0
5 TraesCS3B01G437800 chr3B 84.314 102 13 2 179 278 79245643 79245743 4.020000e-16 97.1
6 TraesCS3B01G437800 chr3B 86.111 72 10 0 4 75 458015854 458015925 1.460000e-10 78.7
7 TraesCS3B01G437800 chr3A 90.957 1913 86 32 974 2852 649532701 649534560 0.000000e+00 2494.0
8 TraesCS3B01G437800 chr3A 96.272 1073 35 3 2864 3931 649534635 649535707 0.000000e+00 1755.0
9 TraesCS3B01G437800 chr3D 86.764 2259 175 64 1737 3931 514646461 514648659 0.000000e+00 2401.0
10 TraesCS3B01G437800 chr3D 89.946 746 39 16 971 1705 514645747 514646467 0.000000e+00 929.0
11 TraesCS3B01G437800 chr3D 88.338 686 60 12 4210 4881 199126485 199127164 0.000000e+00 806.0
12 TraesCS3B01G437800 chr3D 91.636 275 22 1 5 278 514644088 514644362 3.570000e-101 379.0
13 TraesCS3B01G437800 chr3D 87.234 235 17 5 497 718 514644434 514644668 6.270000e-64 255.0
14 TraesCS3B01G437800 chr3D 93.388 121 5 1 837 957 514645507 514645624 5.020000e-40 176.0
15 TraesCS3B01G437800 chr3D 88.172 93 11 0 185 277 11442554 11442646 1.440000e-20 111.0
16 TraesCS3B01G437800 chr3D 92.857 56 4 0 400 455 153143127 153143182 1.130000e-11 82.4
17 TraesCS3B01G437800 chr3D 90.476 42 2 2 415 456 455690766 455690805 2.000000e-03 54.7
18 TraesCS3B01G437800 chr7B 90.276 689 51 7 4204 4882 672755896 672755214 0.000000e+00 887.0
19 TraesCS3B01G437800 chr7B 89.033 693 62 7 4204 4882 564360805 564361497 0.000000e+00 846.0
20 TraesCS3B01G437800 chr7B 94.821 251 13 0 3929 4179 672756117 672755867 4.580000e-105 392.0
21 TraesCS3B01G437800 chr7B 89.831 59 6 0 397 455 223176082 223176024 5.240000e-10 76.8
22 TraesCS3B01G437800 chr7B 91.071 56 5 0 400 455 468195951 468196006 5.240000e-10 76.8
23 TraesCS3B01G437800 chr2B 88.717 709 61 9 4193 4882 30907395 30906687 0.000000e+00 848.0
24 TraesCS3B01G437800 chr2B 88.808 688 68 6 4204 4882 496757139 496756452 0.000000e+00 835.0
25 TraesCS3B01G437800 chr2B 88.023 693 67 9 4204 4882 496762737 496762047 0.000000e+00 806.0
26 TraesCS3B01G437800 chr2B 87.822 698 66 9 4204 4882 30901771 30901074 0.000000e+00 800.0
27 TraesCS3B01G437800 chr2B 86.869 99 10 2 185 281 767379862 767379765 1.860000e-19 108.0
28 TraesCS3B01G437800 chr2B 87.879 66 8 0 390 455 474356139 474356074 1.460000e-10 78.7
29 TraesCS3B01G437800 chr2B 95.652 46 2 0 16 61 727652701 727652656 1.880000e-09 75.0
30 TraesCS3B01G437800 chr1D 88.379 697 49 16 4208 4882 271294561 271293875 0.000000e+00 809.0
31 TraesCS3B01G437800 chr1D 78.113 530 103 8 3190 3711 357434249 357434773 1.690000e-84 324.0
32 TraesCS3B01G437800 chr1D 83.654 104 14 2 177 278 110987431 110987533 1.450000e-15 95.3
33 TraesCS3B01G437800 chr1D 83.178 107 15 2 177 281 491704637 491704532 1.450000e-15 95.3
34 TraesCS3B01G437800 chr4D 88.278 691 54 17 4209 4882 345323311 345322631 0.000000e+00 802.0
35 TraesCS3B01G437800 chr4D 94.118 68 4 0 16 83 221284813 221284880 2.400000e-18 104.0
36 TraesCS3B01G437800 chr4D 83.838 99 10 6 186 281 350258031 350257936 6.730000e-14 89.8
37 TraesCS3B01G437800 chrUn 94.758 248 13 0 3932 4179 378497297 378497050 2.130000e-103 387.0
38 TraesCS3B01G437800 chrUn 94.422 251 13 1 3930 4179 308748319 308748069 7.670000e-103 385.0
39 TraesCS3B01G437800 chrUn 94.422 251 13 1 3930 4179 384296836 384297086 7.670000e-103 385.0
40 TraesCS3B01G437800 chrUn 88.136 118 13 1 52 168 100182677 100182560 6.590000e-29 139.0
41 TraesCS3B01G437800 chrUn 82.857 105 17 1 178 281 404905396 404905292 5.200000e-15 93.5
42 TraesCS3B01G437800 chrUn 82.857 105 17 1 178 281 404906884 404906780 5.200000e-15 93.5
43 TraesCS3B01G437800 chrUn 82.857 105 17 1 178 281 466075322 466075218 5.200000e-15 93.5
44 TraesCS3B01G437800 chrUn 83.333 96 13 2 185 278 325668973 325669067 8.710000e-13 86.1
45 TraesCS3B01G437800 chrUn 83.333 96 13 2 185 278 325826406 325826500 8.710000e-13 86.1
46 TraesCS3B01G437800 chrUn 83.333 96 13 2 185 278 462286222 462286316 8.710000e-13 86.1
47 TraesCS3B01G437800 chrUn 82.105 95 15 1 193 285 376229552 376229458 4.050000e-11 80.5
48 TraesCS3B01G437800 chrUn 79.412 102 18 2 179 278 46136194 46136294 8.770000e-08 69.4
49 TraesCS3B01G437800 chr4B 94.422 251 13 1 3930 4179 661552669 661552419 7.670000e-103 385.0
50 TraesCS3B01G437800 chr4B 94.422 251 13 1 3930 4179 661566665 661566415 7.670000e-103 385.0
51 TraesCS3B01G437800 chr4B 86.170 94 13 0 185 278 159848844 159848751 8.650000e-18 102.0
52 TraesCS3B01G437800 chr4B 82.857 105 14 4 638 741 428839806 428839705 1.870000e-14 91.6
53 TraesCS3B01G437800 chr6B 94.048 252 14 1 3929 4179 85800142 85799891 9.920000e-102 381.0
54 TraesCS3B01G437800 chr1A 78.679 530 100 8 3190 3711 458506499 458507023 1.680000e-89 340.0
55 TraesCS3B01G437800 chr1A 76.543 243 45 9 503 735 586061896 586061656 6.640000e-24 122.0
56 TraesCS3B01G437800 chr1A 82.857 105 17 1 178 281 516078253 516078149 5.200000e-15 93.5
57 TraesCS3B01G437800 chr2D 88.060 134 12 3 52 184 631170639 631170509 6.540000e-34 156.0
58 TraesCS3B01G437800 chr2D 81.503 173 17 8 8 167 505773431 505773261 1.430000e-25 128.0
59 TraesCS3B01G437800 chr2D 92.857 56 4 0 400 455 468980484 468980429 1.130000e-11 82.4
60 TraesCS3B01G437800 chr2D 90.698 43 4 0 397 439 177096857 177096815 1.900000e-04 58.4
61 TraesCS3B01G437800 chr6D 79.310 174 20 8 9 168 15750282 15750453 1.860000e-19 108.0
62 TraesCS3B01G437800 chr6D 87.879 66 4 4 207 269 185566701 185566765 1.880000e-09 75.0
63 TraesCS3B01G437800 chr6D 82.222 90 12 3 178 265 305076240 305076153 1.880000e-09 75.0
64 TraesCS3B01G437800 chr6A 86.139 101 11 2 179 277 539701495 539701396 6.680000e-19 106.0
65 TraesCS3B01G437800 chr6A 87.342 79 10 0 4 82 614615055 614614977 1.870000e-14 91.6
66 TraesCS3B01G437800 chr6A 89.655 58 6 0 398 455 596336179 596336236 1.880000e-09 75.0
67 TraesCS3B01G437800 chr6A 87.719 57 7 0 399 455 33259269 33259213 3.150000e-07 67.6
68 TraesCS3B01G437800 chr6A 85.246 61 9 0 397 457 595071511 595071451 4.080000e-06 63.9
69 TraesCS3B01G437800 chr6A 84.127 63 8 2 396 457 602984524 602984463 5.280000e-05 60.2
70 TraesCS3B01G437800 chr5B 86.170 94 13 0 188 281 400531446 400531353 8.650000e-18 102.0
71 TraesCS3B01G437800 chr5D 83.019 106 14 3 175 278 547239708 547239811 5.200000e-15 93.5
72 TraesCS3B01G437800 chr5D 86.207 58 8 0 400 457 346643154 346643097 4.080000e-06 63.9
73 TraesCS3B01G437800 chr5D 89.583 48 5 0 394 441 62131271 62131318 1.470000e-05 62.1
74 TraesCS3B01G437800 chr4A 82.569 109 13 5 631 738 117090780 117090883 1.870000e-14 91.6
75 TraesCS3B01G437800 chr4A 88.136 59 7 0 399 457 739047223 739047165 2.440000e-08 71.3
76 TraesCS3B01G437800 chr7A 91.803 61 5 0 397 457 678752701 678752641 8.710000e-13 86.1
77 TraesCS3B01G437800 chr7A 90.164 61 6 0 397 457 688368128 688368188 4.050000e-11 80.5
78 TraesCS3B01G437800 chr7A 91.071 56 5 0 400 455 200703706 200703761 5.240000e-10 76.8
79 TraesCS3B01G437800 chr7A 91.071 56 4 1 400 455 166753226 166753172 1.880000e-09 75.0
80 TraesCS3B01G437800 chr1B 89.831 59 6 0 16 74 96485041 96485099 5.240000e-10 76.8
81 TraesCS3B01G437800 chr1B 89.091 55 6 0 4 58 612900813 612900867 8.770000e-08 69.4
82 TraesCS3B01G437800 chr7D 88.333 60 7 0 16 75 608451664 608451605 6.780000e-09 73.1
83 TraesCS3B01G437800 chr7D 91.667 48 4 0 410 457 384450594 384450547 3.150000e-07 67.6
84 TraesCS3B01G437800 chr5A 100.000 28 0 0 361 388 533558966 533558993 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G437800 chr3B 676891681 676896562 4881 False 4558.0 9016 99.1230 1 4882 2 chr3B.!!$F5 4881
1 TraesCS3B01G437800 chr3A 649532701 649535707 3006 False 2124.5 2494 93.6145 974 3931 2 chr3A.!!$F1 2957
2 TraesCS3B01G437800 chr3D 514644088 514648659 4571 False 828.0 2401 89.7936 5 3931 5 chr3D.!!$F5 3926
3 TraesCS3B01G437800 chr3D 199126485 199127164 679 False 806.0 806 88.3380 4210 4881 1 chr3D.!!$F3 671
4 TraesCS3B01G437800 chr7B 564360805 564361497 692 False 846.0 846 89.0330 4204 4882 1 chr7B.!!$F2 678
5 TraesCS3B01G437800 chr7B 672755214 672756117 903 True 639.5 887 92.5485 3929 4882 2 chr7B.!!$R2 953
6 TraesCS3B01G437800 chr2B 30906687 30907395 708 True 848.0 848 88.7170 4193 4882 1 chr2B.!!$R2 689
7 TraesCS3B01G437800 chr2B 496756452 496757139 687 True 835.0 835 88.8080 4204 4882 1 chr2B.!!$R4 678
8 TraesCS3B01G437800 chr2B 496762047 496762737 690 True 806.0 806 88.0230 4204 4882 1 chr2B.!!$R5 678
9 TraesCS3B01G437800 chr2B 30901074 30901771 697 True 800.0 800 87.8220 4204 4882 1 chr2B.!!$R1 678
10 TraesCS3B01G437800 chr1D 271293875 271294561 686 True 809.0 809 88.3790 4208 4882 1 chr1D.!!$R1 674
11 TraesCS3B01G437800 chr1D 357434249 357434773 524 False 324.0 324 78.1130 3190 3711 1 chr1D.!!$F2 521
12 TraesCS3B01G437800 chr4D 345322631 345323311 680 True 802.0 802 88.2780 4209 4882 1 chr4D.!!$R1 673
13 TraesCS3B01G437800 chr1A 458506499 458507023 524 False 340.0 340 78.6790 3190 3711 1 chr1A.!!$F1 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
469 471 0.033503 CTAAATGGGGAGGGCCGTTT 60.034 55.000 0.00 0.00 33.83 3.60 F
746 1417 0.040781 TCAAGCTAAAACCGCGCAAC 60.041 50.000 8.75 0.00 0.00 4.17 F
963 1716 0.042131 ACTTATCGTCCTGGGACCCA 59.958 55.000 14.08 14.08 41.76 4.51 F
968 1721 0.178926 TCGTCCTGGGACCCAAACTA 60.179 55.000 15.87 5.29 41.76 2.24 F
1688 2573 0.391228 TGCGATGGCGGATAAGCTTA 59.609 50.000 8.99 8.99 44.10 3.09 F
2045 2938 1.135402 GCAGTAAGCCAAAATCACGGG 60.135 52.381 0.00 0.00 37.23 5.28 F
3491 4517 1.067846 CGGTCACCTGATGAAGAACGA 60.068 52.381 0.00 0.00 39.72 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1411 2285 0.178987 ATCTCCCGCATAGAGTCCGT 60.179 55.000 0.00 0.0 32.93 4.69 R
2737 3676 1.005215 CCAGGAAGCAGGAATGGAGTT 59.995 52.381 0.00 0.0 32.55 3.01 R
2940 3959 1.205893 AGCACTAAGTAGCAGGCAGAC 59.794 52.381 0.00 0.0 0.00 3.51 R
2984 4006 6.187682 ACAAATATTACAGGGGGAAGACTTG 58.812 40.000 0.00 0.0 0.00 3.16 R
2985 4007 6.402981 ACAAATATTACAGGGGGAAGACTT 57.597 37.500 0.00 0.0 0.00 3.01 R
3796 4822 0.178987 AGGACAGTGACCTGACGAGT 60.179 55.000 13.63 0.0 41.50 4.18 R
4658 5701 0.037590 ATTGCACCCTTCGGCTGTTA 59.962 50.000 0.00 0.0 0.00 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.474816 AGAAAGTGACTCGTGCTCAAC 58.525 47.619 0.00 0.00 0.00 3.18
63 64 3.138205 ACTTGTAACGATCTCGAGCTG 57.862 47.619 7.81 2.01 43.02 4.24
88 89 9.444600 TGGTTTCGAGCTAAATAAGATAAGTTT 57.555 29.630 0.00 0.00 0.00 2.66
137 139 9.606631 AAAACAAGATAAGCCACAACATAAAAA 57.393 25.926 0.00 0.00 0.00 1.94
247 249 9.409312 CATGAACTACATACAAAGCAAAATGAA 57.591 29.630 0.00 0.00 37.46 2.57
320 322 8.332464 TCCGTATGTAATATCTTTCTTTTTGCG 58.668 33.333 0.00 0.00 0.00 4.85
321 323 8.332464 CCGTATGTAATATCTTTCTTTTTGCGA 58.668 33.333 0.00 0.00 0.00 5.10
322 324 9.358123 CGTATGTAATATCTTTCTTTTTGCGAG 57.642 33.333 0.00 0.00 0.00 5.03
325 327 9.994432 ATGTAATATCTTTCTTTTTGCGAGAAG 57.006 29.630 0.00 0.00 34.84 2.85
347 349 8.244802 AGAAGCATCTGTATGTAACCGATATAC 58.755 37.037 0.00 0.00 35.38 1.47
359 361 7.166851 TGTAACCGATATACAAACAAAGGGAA 58.833 34.615 0.00 0.00 30.65 3.97
362 364 8.446599 AACCGATATACAAACAAAGGGAATAG 57.553 34.615 0.00 0.00 0.00 1.73
403 405 3.131223 TGTGGATGAGCTAGCAAGTACTC 59.869 47.826 18.83 4.90 0.00 2.59
404 406 2.695666 TGGATGAGCTAGCAAGTACTCC 59.304 50.000 18.83 13.46 0.00 3.85
405 407 2.962421 GGATGAGCTAGCAAGTACTCCT 59.038 50.000 18.83 0.00 0.00 3.69
406 408 3.386402 GGATGAGCTAGCAAGTACTCCTT 59.614 47.826 18.83 0.00 0.00 3.36
407 409 4.500716 GGATGAGCTAGCAAGTACTCCTTC 60.501 50.000 18.83 1.75 0.00 3.46
408 410 2.761208 TGAGCTAGCAAGTACTCCTTCC 59.239 50.000 18.83 0.00 0.00 3.46
409 411 1.751924 AGCTAGCAAGTACTCCTTCCG 59.248 52.381 18.83 0.00 0.00 4.30
410 412 1.477295 GCTAGCAAGTACTCCTTCCGT 59.523 52.381 10.63 0.00 0.00 4.69
411 413 2.686915 GCTAGCAAGTACTCCTTCCGTA 59.313 50.000 10.63 0.00 0.00 4.02
414 416 4.189639 AGCAAGTACTCCTTCCGTAAAG 57.810 45.455 0.00 0.00 34.52 1.85
417 419 4.992951 GCAAGTACTCCTTCCGTAAAGAAA 59.007 41.667 0.00 0.00 37.12 2.52
418 420 5.642491 GCAAGTACTCCTTCCGTAAAGAAAT 59.358 40.000 0.00 0.00 37.12 2.17
419 421 6.815142 GCAAGTACTCCTTCCGTAAAGAAATA 59.185 38.462 0.00 0.00 37.12 1.40
420 422 7.494952 GCAAGTACTCCTTCCGTAAAGAAATAT 59.505 37.037 0.00 0.00 37.12 1.28
425 427 8.943909 ACTCCTTCCGTAAAGAAATATAAGTG 57.056 34.615 0.00 0.00 37.12 3.16
426 428 8.537858 ACTCCTTCCGTAAAGAAATATAAGTGT 58.462 33.333 0.00 0.00 37.12 3.55
462 464 9.813826 ATTAAAATAGTGATCTAAATGGGGAGG 57.186 33.333 0.00 0.00 0.00 4.30
463 465 5.850046 AATAGTGATCTAAATGGGGAGGG 57.150 43.478 0.00 0.00 0.00 4.30
464 466 1.777272 AGTGATCTAAATGGGGAGGGC 59.223 52.381 0.00 0.00 0.00 5.19
465 467 1.149101 TGATCTAAATGGGGAGGGCC 58.851 55.000 0.00 0.00 0.00 5.80
466 468 0.036875 GATCTAAATGGGGAGGGCCG 59.963 60.000 0.00 0.00 33.83 6.13
467 469 0.697854 ATCTAAATGGGGAGGGCCGT 60.698 55.000 0.00 0.00 33.83 5.68
468 470 0.917333 TCTAAATGGGGAGGGCCGTT 60.917 55.000 0.00 0.00 33.83 4.44
469 471 0.033503 CTAAATGGGGAGGGCCGTTT 60.034 55.000 0.00 0.00 33.83 3.60
470 472 0.410270 TAAATGGGGAGGGCCGTTTT 59.590 50.000 0.00 0.00 33.83 2.43
471 473 1.191489 AAATGGGGAGGGCCGTTTTG 61.191 55.000 0.00 0.00 33.83 2.44
472 474 3.600410 ATGGGGAGGGCCGTTTTGG 62.600 63.158 0.00 0.00 42.50 3.28
485 487 4.766404 CCGTTTTGGCTCTTATGTCTTT 57.234 40.909 0.00 0.00 0.00 2.52
486 488 5.121221 CCGTTTTGGCTCTTATGTCTTTT 57.879 39.130 0.00 0.00 0.00 2.27
487 489 5.528870 CCGTTTTGGCTCTTATGTCTTTTT 58.471 37.500 0.00 0.00 0.00 1.94
488 490 6.674066 CCGTTTTGGCTCTTATGTCTTTTTA 58.326 36.000 0.00 0.00 0.00 1.52
489 491 6.581166 CCGTTTTGGCTCTTATGTCTTTTTAC 59.419 38.462 0.00 0.00 0.00 2.01
490 492 7.136119 CGTTTTGGCTCTTATGTCTTTTTACA 58.864 34.615 0.00 0.00 0.00 2.41
491 493 7.323656 CGTTTTGGCTCTTATGTCTTTTTACAG 59.676 37.037 0.00 0.00 31.70 2.74
492 494 8.349983 GTTTTGGCTCTTATGTCTTTTTACAGA 58.650 33.333 0.00 0.00 31.70 3.41
493 495 7.672983 TTGGCTCTTATGTCTTTTTACAGAG 57.327 36.000 0.00 0.00 31.70 3.35
494 496 6.173339 TGGCTCTTATGTCTTTTTACAGAGG 58.827 40.000 0.00 0.00 31.70 3.69
495 497 5.586643 GGCTCTTATGTCTTTTTACAGAGGG 59.413 44.000 0.00 0.00 31.70 4.30
496 498 6.407202 GCTCTTATGTCTTTTTACAGAGGGA 58.593 40.000 0.00 0.00 31.70 4.20
497 499 6.536941 GCTCTTATGTCTTTTTACAGAGGGAG 59.463 42.308 0.00 0.00 31.70 4.30
498 500 7.554959 TCTTATGTCTTTTTACAGAGGGAGT 57.445 36.000 0.00 0.00 31.70 3.85
499 501 8.660295 TCTTATGTCTTTTTACAGAGGGAGTA 57.340 34.615 0.00 0.00 31.70 2.59
500 502 8.529476 TCTTATGTCTTTTTACAGAGGGAGTAC 58.471 37.037 0.00 0.00 31.70 2.73
501 503 6.936968 ATGTCTTTTTACAGAGGGAGTACT 57.063 37.500 0.00 0.00 31.70 2.73
502 504 9.537852 TTATGTCTTTTTACAGAGGGAGTACTA 57.462 33.333 0.00 0.00 31.70 1.82
503 505 7.463961 TGTCTTTTTACAGAGGGAGTACTAG 57.536 40.000 0.00 0.00 0.00 2.57
504 506 6.071503 TGTCTTTTTACAGAGGGAGTACTAGC 60.072 42.308 0.00 0.00 0.00 3.42
505 507 6.014647 TCTTTTTACAGAGGGAGTACTAGCA 58.985 40.000 0.00 0.00 0.00 3.49
506 508 6.495872 TCTTTTTACAGAGGGAGTACTAGCAA 59.504 38.462 0.00 0.00 0.00 3.91
507 509 5.916661 TTTACAGAGGGAGTACTAGCAAG 57.083 43.478 0.00 0.00 0.00 4.01
508 510 3.741245 ACAGAGGGAGTACTAGCAAGA 57.259 47.619 0.00 0.00 0.00 3.02
509 511 3.626930 ACAGAGGGAGTACTAGCAAGAG 58.373 50.000 0.00 0.00 0.00 2.85
510 512 3.267291 ACAGAGGGAGTACTAGCAAGAGA 59.733 47.826 0.00 0.00 0.00 3.10
511 513 4.263994 ACAGAGGGAGTACTAGCAAGAGAA 60.264 45.833 0.00 0.00 0.00 2.87
512 514 4.338118 CAGAGGGAGTACTAGCAAGAGAAG 59.662 50.000 0.00 0.00 0.00 2.85
513 515 4.228666 AGAGGGAGTACTAGCAAGAGAAGA 59.771 45.833 0.00 0.00 0.00 2.87
514 516 4.936802 AGGGAGTACTAGCAAGAGAAGAA 58.063 43.478 0.00 0.00 0.00 2.52
524 526 4.147321 AGCAAGAGAAGAAAATGAAGGCA 58.853 39.130 0.00 0.00 0.00 4.75
548 550 1.682854 CTGCTCTCAAACTTTGGCCAA 59.317 47.619 16.05 16.05 0.00 4.52
563 565 7.602753 ACTTTGGCCAAAACTACAAGATATTC 58.397 34.615 29.93 0.00 0.00 1.75
571 573 7.218773 CCAAAACTACAAGATATTCAACGCATG 59.781 37.037 0.00 0.00 0.00 4.06
574 577 2.358898 ACAAGATATTCAACGCATGGCC 59.641 45.455 0.00 0.00 0.00 5.36
587 590 3.002371 TGGCCGGCCATGTATCAA 58.998 55.556 44.23 19.94 41.89 2.57
606 609 9.638239 TGTATCAAATTGAGGCTAAATTTTGTC 57.362 29.630 18.15 10.54 35.55 3.18
612 615 2.227865 GAGGCTAAATTTTGTCCACGCA 59.772 45.455 0.00 0.00 0.00 5.24
619 622 7.489757 GGCTAAATTTTGTCCACGCATAATTTA 59.510 33.333 0.00 11.13 39.19 1.40
644 655 8.807667 ACATGTTTGCTAAATGAAGAGAAAAG 57.192 30.769 0.00 0.00 0.00 2.27
741 1412 8.936864 ACTTATATGATATCAAGCTAAAACCGC 58.063 33.333 9.99 0.00 0.00 5.68
746 1417 0.040781 TCAAGCTAAAACCGCGCAAC 60.041 50.000 8.75 0.00 0.00 4.17
761 1432 2.682856 GCGCAACCTTATTTCTGGATCA 59.317 45.455 0.30 0.00 0.00 2.92
763 1434 4.731773 GCGCAACCTTATTTCTGGATCAAG 60.732 45.833 0.30 0.00 0.00 3.02
765 1436 4.400567 GCAACCTTATTTCTGGATCAAGCT 59.599 41.667 0.00 0.00 0.00 3.74
776 1447 5.118990 TCTGGATCAAGCTACATAAAGTGC 58.881 41.667 0.00 0.00 0.00 4.40
778 1449 5.500234 TGGATCAAGCTACATAAAGTGCTT 58.500 37.500 0.00 0.00 41.79 3.91
784 1455 9.838339 ATCAAGCTACATAAAGTGCTTATACTT 57.162 29.630 0.00 0.00 40.29 2.24
810 1563 5.009410 AGCTCATTTCTTTTCAAGTCCACTG 59.991 40.000 0.00 0.00 0.00 3.66
821 1574 8.974060 TTTTCAAGTCCACTGTTTCTATTAGT 57.026 30.769 0.00 0.00 0.00 2.24
823 1576 9.485206 TTTCAAGTCCACTGTTTCTATTAGTAC 57.515 33.333 0.00 0.00 0.00 2.73
824 1577 8.418597 TCAAGTCCACTGTTTCTATTAGTACT 57.581 34.615 0.00 0.00 0.00 2.73
825 1578 8.521176 TCAAGTCCACTGTTTCTATTAGTACTC 58.479 37.037 0.00 0.00 0.00 2.59
826 1579 7.086230 AGTCCACTGTTTCTATTAGTACTCG 57.914 40.000 0.00 0.00 0.00 4.18
827 1580 6.883217 AGTCCACTGTTTCTATTAGTACTCGA 59.117 38.462 0.00 0.00 0.00 4.04
828 1581 7.392673 AGTCCACTGTTTCTATTAGTACTCGAA 59.607 37.037 0.00 0.00 0.00 3.71
829 1582 8.025445 GTCCACTGTTTCTATTAGTACTCGAAA 58.975 37.037 0.00 2.26 0.00 3.46
830 1583 8.579006 TCCACTGTTTCTATTAGTACTCGAAAA 58.421 33.333 0.00 0.00 0.00 2.29
831 1584 9.199982 CCACTGTTTCTATTAGTACTCGAAAAA 57.800 33.333 0.00 0.00 0.00 1.94
845 1598 9.852091 AGTACTCGAAAAATTGGTACTACTAAG 57.148 33.333 9.01 0.00 40.49 2.18
868 1621 1.342555 TAACAGCGTCGTTTCATCCG 58.657 50.000 0.00 0.00 0.00 4.18
915 1668 3.557228 ATGGAAGAGAGAGCCACATTC 57.443 47.619 0.00 0.00 33.93 2.67
919 1672 1.949799 AGAGAGAGCCACATTCCAGT 58.050 50.000 0.00 0.00 0.00 4.00
920 1673 3.107402 AGAGAGAGCCACATTCCAGTA 57.893 47.619 0.00 0.00 0.00 2.74
921 1674 2.763448 AGAGAGAGCCACATTCCAGTAC 59.237 50.000 0.00 0.00 0.00 2.73
957 1710 1.138859 TCCATGCACTTATCGTCCTGG 59.861 52.381 0.00 0.00 0.00 4.45
958 1711 1.586422 CATGCACTTATCGTCCTGGG 58.414 55.000 0.00 0.00 0.00 4.45
959 1712 1.138859 CATGCACTTATCGTCCTGGGA 59.861 52.381 0.00 0.00 0.00 4.37
960 1713 0.535335 TGCACTTATCGTCCTGGGAC 59.465 55.000 9.55 9.55 41.40 4.46
961 1714 0.179081 GCACTTATCGTCCTGGGACC 60.179 60.000 13.41 0.00 41.76 4.46
962 1715 0.464452 CACTTATCGTCCTGGGACCC 59.536 60.000 13.41 2.45 41.76 4.46
963 1716 0.042131 ACTTATCGTCCTGGGACCCA 59.958 55.000 14.08 14.08 41.76 4.51
964 1717 1.200519 CTTATCGTCCTGGGACCCAA 58.799 55.000 15.87 0.00 41.76 4.12
966 1719 0.906775 TATCGTCCTGGGACCCAAAC 59.093 55.000 15.87 14.48 41.76 2.93
968 1721 0.178926 TCGTCCTGGGACCCAAACTA 60.179 55.000 15.87 5.29 41.76 2.24
969 1722 0.909623 CGTCCTGGGACCCAAACTAT 59.090 55.000 15.87 0.00 41.76 2.12
970 1723 2.112998 CGTCCTGGGACCCAAACTATA 58.887 52.381 15.87 0.00 41.76 1.31
971 1724 2.704065 CGTCCTGGGACCCAAACTATAT 59.296 50.000 15.87 0.00 41.76 0.86
972 1725 3.899360 CGTCCTGGGACCCAAACTATATA 59.101 47.826 15.87 0.00 41.76 0.86
995 1857 3.625897 CCACCCTCGCTGTCACCA 61.626 66.667 0.00 0.00 0.00 4.17
1096 1970 4.447342 CCCCAAGGCCCGAGCATT 62.447 66.667 0.00 0.00 45.58 3.56
1100 1974 1.451927 CAAGGCCCGAGCATTAGCA 60.452 57.895 0.00 0.00 42.06 3.49
1110 1984 1.377987 GCATTAGCAACCCACCCGA 60.378 57.895 0.00 0.00 41.58 5.14
1296 2170 0.972983 TCGGGGAAGAAGAGCAGGAG 60.973 60.000 0.00 0.00 0.00 3.69
1343 2217 0.976073 CAAGCCCTCCTCTTCCGGTA 60.976 60.000 0.00 0.00 0.00 4.02
1362 2236 5.975939 CCGGTAAAATTCTTCTACTACGAGG 59.024 44.000 0.00 0.00 0.00 4.63
1378 2252 1.743996 GAGGTTCCATGCTCTGTTCC 58.256 55.000 0.00 0.00 0.00 3.62
1411 2285 0.620556 GAAAGGTGGGGATCTCTGCA 59.379 55.000 0.00 0.00 0.00 4.41
1414 2288 2.187946 GTGGGGATCTCTGCACGG 59.812 66.667 0.00 0.00 0.00 4.94
1416 2290 2.359169 TGGGGATCTCTGCACGGAC 61.359 63.158 0.00 0.00 0.00 4.79
1429 2303 4.159266 CGGACTCTATGCGGGAGA 57.841 61.111 7.27 0.00 38.73 3.71
1433 2307 1.621992 GACTCTATGCGGGAGATGGA 58.378 55.000 7.27 0.00 35.10 3.41
1436 2310 1.688735 CTCTATGCGGGAGATGGACAA 59.311 52.381 0.00 0.00 33.03 3.18
1440 2314 1.299976 GCGGGAGATGGACAAACCT 59.700 57.895 0.00 0.00 39.86 3.50
1495 2369 1.859135 GCGTCACTTTGCGCGATTC 60.859 57.895 12.10 0.00 44.13 2.52
1521 2397 1.274596 CCCTTTCCGTGATCGTTACG 58.725 55.000 0.00 0.00 40.98 3.18
1533 2415 2.403378 CGTTACGGTTGGGCCATGG 61.403 63.158 7.26 7.63 36.97 3.66
1543 2428 1.224592 GGGCCATGGAAGTGTCGAT 59.775 57.895 18.40 0.00 0.00 3.59
1584 2469 3.622826 CAGGGGTCGGTCGGTGTT 61.623 66.667 0.00 0.00 0.00 3.32
1591 2476 1.269448 GGTCGGTCGGTGTTAGTAACA 59.731 52.381 11.75 11.75 39.52 2.41
1598 2483 4.209911 GGTCGGTGTTAGTAACAGTGAAAC 59.790 45.833 16.03 9.82 43.10 2.78
1600 2485 4.805192 TCGGTGTTAGTAACAGTGAAACAC 59.195 41.667 16.03 4.49 45.72 3.32
1634 2519 9.857656 ATTGGTGACAGTAATAGAATGATGAAT 57.142 29.630 0.00 0.00 44.54 2.57
1654 2539 2.466846 TCACTTATGCCTGGCTGTCTA 58.533 47.619 21.03 0.00 0.00 2.59
1677 2562 1.986575 GAGGTTCTTGCTGCGATGGC 61.987 60.000 0.00 0.00 40.52 4.40
1687 2572 1.146041 TGCGATGGCGGATAAGCTT 59.854 52.632 3.48 3.48 44.10 3.74
1688 2573 0.391228 TGCGATGGCGGATAAGCTTA 59.609 50.000 8.99 8.99 44.10 3.09
1696 2581 2.152016 GCGGATAAGCTTATGGGGTTC 58.848 52.381 23.51 8.70 0.00 3.62
1700 2585 4.036380 CGGATAAGCTTATGGGGTTCAAAC 59.964 45.833 23.51 4.97 0.00 2.93
1718 2603 2.031163 GCTTCCGGTGCAGTCTGT 59.969 61.111 15.21 0.00 0.00 3.41
1729 2614 4.024048 CGGTGCAGTCTGTGATTAAAAACT 60.024 41.667 0.93 0.00 0.00 2.66
1732 2617 6.294176 GGTGCAGTCTGTGATTAAAAACTCAT 60.294 38.462 0.93 0.00 0.00 2.90
1757 2642 5.875359 ACTAATAGCTTGTTTACTGGAGTGC 59.125 40.000 0.00 0.00 0.00 4.40
1795 2680 3.131577 AGCGGACTTATGGTTGTTCGATA 59.868 43.478 0.00 0.00 0.00 2.92
1810 2696 8.129211 GGTTGTTCGATAATCTTATTTTCCCAG 58.871 37.037 0.00 0.00 0.00 4.45
1833 2719 2.223112 CGCGCTTTGCTTAGATGTGAAT 60.223 45.455 5.56 0.00 43.27 2.57
1867 2753 6.203530 CAGCATAGTATGGTAGGTTTGATGTG 59.796 42.308 14.26 0.00 39.29 3.21
1868 2754 6.055588 GCATAGTATGGTAGGTTTGATGTGT 58.944 40.000 12.07 0.00 0.00 3.72
1931 2824 5.294356 TCTATGCAACGAACTAAACTGTGT 58.706 37.500 0.00 0.00 0.00 3.72
1933 2826 4.009798 TGCAACGAACTAAACTGTGTTG 57.990 40.909 0.00 0.00 39.61 3.33
1985 2878 4.219070 TGATGGTTTCTCAATGCAGGAAAG 59.781 41.667 0.00 0.00 30.98 2.62
2042 2935 3.429085 CGATGCAGTAAGCCAAAATCAC 58.571 45.455 0.00 0.00 44.83 3.06
2045 2938 1.135402 GCAGTAAGCCAAAATCACGGG 60.135 52.381 0.00 0.00 37.23 5.28
2174 3067 4.251268 ACTAGTTTATTCCAACTGTCGCC 58.749 43.478 0.00 0.00 37.57 5.54
2264 3165 7.664082 ACATGATCTAGCTTTATGAATTCCG 57.336 36.000 0.00 0.00 0.00 4.30
2265 3166 7.220030 ACATGATCTAGCTTTATGAATTCCGT 58.780 34.615 0.00 0.00 0.00 4.69
2268 3169 6.420903 TGATCTAGCTTTATGAATTCCGTTCG 59.579 38.462 2.27 0.00 39.80 3.95
2446 3372 4.071423 TGTGTTCACCCAACATCATACTG 58.929 43.478 0.37 0.00 46.90 2.74
2568 3497 9.573166 TTCTGATCCTAGTTGAAAATTTTCTCA 57.427 29.630 26.73 18.76 38.02 3.27
2632 3569 7.555554 TCAACTATGACCTACTCCAGTAAGTAC 59.444 40.741 0.00 0.00 0.00 2.73
2644 3581 4.525487 TCCAGTAAGTACGTCAATGTTCCT 59.475 41.667 0.00 0.00 0.00 3.36
2649 3586 3.660865 AGTACGTCAATGTTCCTCCAAC 58.339 45.455 0.00 0.00 35.28 3.77
2650 3587 2.930826 ACGTCAATGTTCCTCCAACT 57.069 45.000 0.00 0.00 35.79 3.16
2689 3626 8.459635 TCTCAACTATGTCAGAGTATGTAACAC 58.540 37.037 0.00 0.00 0.00 3.32
2692 3629 2.858839 TGTCAGAGTATGTAACACGCG 58.141 47.619 3.53 3.53 0.00 6.01
2710 3649 4.260656 CACGCGCTGACATTTTATTTCTTC 59.739 41.667 5.73 0.00 0.00 2.87
2737 3676 7.893658 AGGTTCTCACTACGAATCTTCTTTTA 58.106 34.615 0.00 0.00 27.66 1.52
2834 3783 6.569228 CATTTCTATGCAGCAACAAGATTG 57.431 37.500 0.00 1.29 0.00 2.67
2852 3801 7.118390 ACAAGATTGTCAGTGTGCTATTTCTAC 59.882 37.037 0.00 0.00 36.50 2.59
2853 3802 6.701340 AGATTGTCAGTGTGCTATTTCTACA 58.299 36.000 0.00 0.00 0.00 2.74
2854 3803 6.815641 AGATTGTCAGTGTGCTATTTCTACAG 59.184 38.462 0.00 0.00 0.00 2.74
2855 3804 5.722021 TGTCAGTGTGCTATTTCTACAGA 57.278 39.130 0.00 0.00 0.00 3.41
2860 3809 7.547370 GTCAGTGTGCTATTTCTACAGAAGAAT 59.453 37.037 0.00 0.00 43.75 2.40
2861 3810 8.097038 TCAGTGTGCTATTTCTACAGAAGAATT 58.903 33.333 0.00 0.00 43.75 2.17
2862 3811 8.173775 CAGTGTGCTATTTCTACAGAAGAATTG 58.826 37.037 0.00 0.00 43.75 2.32
2866 3878 6.886459 TGCTATTTCTACAGAAGAATTGCCTT 59.114 34.615 7.26 0.00 43.75 4.35
2998 4021 1.280421 CTCTTCCAAGTCTTCCCCCTG 59.720 57.143 0.00 0.00 0.00 4.45
3396 4422 1.186200 TCCTGATGAGGACCAACGAG 58.814 55.000 0.00 0.00 44.13 4.18
3491 4517 1.067846 CGGTCACCTGATGAAGAACGA 60.068 52.381 0.00 0.00 39.72 3.85
3492 4518 2.338500 GGTCACCTGATGAAGAACGAC 58.662 52.381 0.00 0.00 39.72 4.34
3645 4671 3.236003 GACGGACCCTTCGTGCCTT 62.236 63.158 0.00 0.00 41.22 4.35
3803 4829 9.478768 TTGTACATAATTTGAGTAAACTCGTCA 57.521 29.630 0.00 0.00 45.72 4.35
3837 4863 3.106407 GTCACGTGCGGAGACTGC 61.106 66.667 11.67 0.00 0.00 4.40
3883 4912 5.933790 TCAATAATACGTTTGCTGTTGGTC 58.066 37.500 0.00 0.00 0.00 4.02
3918 4948 6.834168 TTTTTAGATTTTTCTGGCCGAGAT 57.166 33.333 0.00 0.00 0.00 2.75
4002 5032 8.154649 ACCGAATAAAGCATGACTAAAATAGG 57.845 34.615 0.00 0.00 0.00 2.57
4075 5105 7.112122 TCTTCACATATGAACTGTAGGCAAAT 58.888 34.615 10.38 0.00 40.01 2.32
4108 5138 6.406093 GCAAGCAGCATATATGAAGTAGAG 57.594 41.667 17.10 1.64 44.79 2.43
4109 5139 5.931146 GCAAGCAGCATATATGAAGTAGAGT 59.069 40.000 17.10 0.00 44.79 3.24
4136 5166 5.918608 ACATATGTAGGGCAAACAGTAGAG 58.081 41.667 6.56 0.00 0.00 2.43
4137 5167 5.425539 ACATATGTAGGGCAAACAGTAGAGT 59.574 40.000 6.56 0.00 0.00 3.24
4151 5181 5.707242 CAGTAGAGTAAGGAACTGTGACA 57.293 43.478 0.00 0.00 40.86 3.58
4152 5182 6.274157 CAGTAGAGTAAGGAACTGTGACAT 57.726 41.667 0.00 0.00 40.86 3.06
4153 5183 6.096036 CAGTAGAGTAAGGAACTGTGACATG 58.904 44.000 0.00 0.00 40.86 3.21
4154 5184 6.010850 AGTAGAGTAAGGAACTGTGACATGA 58.989 40.000 0.00 0.00 40.86 3.07
4155 5185 5.140747 AGAGTAAGGAACTGTGACATGAC 57.859 43.478 0.00 0.00 40.86 3.06
4156 5186 4.021016 AGAGTAAGGAACTGTGACATGACC 60.021 45.833 0.00 0.00 40.86 4.02
4157 5187 3.904339 AGTAAGGAACTGTGACATGACCT 59.096 43.478 0.00 0.00 40.86 3.85
4158 5188 3.409026 AAGGAACTGTGACATGACCTC 57.591 47.619 0.00 0.00 40.86 3.85
4159 5189 2.614259 AGGAACTGTGACATGACCTCT 58.386 47.619 0.00 0.00 37.18 3.69
4160 5190 3.779444 AGGAACTGTGACATGACCTCTA 58.221 45.455 0.00 0.00 37.18 2.43
4161 5191 4.160329 AGGAACTGTGACATGACCTCTAA 58.840 43.478 0.00 0.00 37.18 2.10
4162 5192 4.021016 AGGAACTGTGACATGACCTCTAAC 60.021 45.833 0.00 0.00 37.18 2.34
4163 5193 4.262463 GGAACTGTGACATGACCTCTAACA 60.262 45.833 0.00 0.00 0.00 2.41
4164 5194 4.527509 ACTGTGACATGACCTCTAACAG 57.472 45.455 0.00 5.40 39.49 3.16
4165 5195 4.152647 ACTGTGACATGACCTCTAACAGA 58.847 43.478 15.70 0.00 37.56 3.41
4166 5196 4.588951 ACTGTGACATGACCTCTAACAGAA 59.411 41.667 15.70 0.00 37.56 3.02
4167 5197 5.139435 TGTGACATGACCTCTAACAGAAG 57.861 43.478 0.00 0.00 0.00 2.85
4168 5198 4.021104 TGTGACATGACCTCTAACAGAAGG 60.021 45.833 0.00 0.00 0.00 3.46
4169 5199 4.220821 GTGACATGACCTCTAACAGAAGGA 59.779 45.833 0.00 0.00 0.00 3.36
4170 5200 4.464244 TGACATGACCTCTAACAGAAGGAG 59.536 45.833 0.00 0.00 0.00 3.69
4171 5201 4.421131 ACATGACCTCTAACAGAAGGAGT 58.579 43.478 0.00 0.00 0.00 3.85
4172 5202 5.580998 ACATGACCTCTAACAGAAGGAGTA 58.419 41.667 0.00 0.00 0.00 2.59
4173 5203 6.017192 ACATGACCTCTAACAGAAGGAGTAA 58.983 40.000 0.00 0.00 0.00 2.24
4174 5204 6.497259 ACATGACCTCTAACAGAAGGAGTAAA 59.503 38.462 0.00 0.00 0.00 2.01
4175 5205 6.989155 TGACCTCTAACAGAAGGAGTAAAA 57.011 37.500 0.00 0.00 0.00 1.52
4176 5206 7.369551 TGACCTCTAACAGAAGGAGTAAAAA 57.630 36.000 0.00 0.00 0.00 1.94
4177 5207 7.215085 TGACCTCTAACAGAAGGAGTAAAAAC 58.785 38.462 0.00 0.00 0.00 2.43
4178 5208 7.133133 ACCTCTAACAGAAGGAGTAAAAACA 57.867 36.000 0.00 0.00 0.00 2.83
4179 5209 7.746703 ACCTCTAACAGAAGGAGTAAAAACAT 58.253 34.615 0.00 0.00 0.00 2.71
4180 5210 7.661847 ACCTCTAACAGAAGGAGTAAAAACATG 59.338 37.037 0.00 0.00 0.00 3.21
4181 5211 7.878127 CCTCTAACAGAAGGAGTAAAAACATGA 59.122 37.037 0.00 0.00 0.00 3.07
4182 5212 8.603242 TCTAACAGAAGGAGTAAAAACATGAC 57.397 34.615 0.00 0.00 0.00 3.06
4183 5213 6.635030 AACAGAAGGAGTAAAAACATGACC 57.365 37.500 0.00 0.00 0.00 4.02
4184 5214 5.941788 ACAGAAGGAGTAAAAACATGACCT 58.058 37.500 0.00 0.00 0.00 3.85
4185 5215 5.998363 ACAGAAGGAGTAAAAACATGACCTC 59.002 40.000 0.00 0.00 0.00 3.85
4186 5216 6.183361 ACAGAAGGAGTAAAAACATGACCTCT 60.183 38.462 0.00 0.00 0.00 3.69
4187 5217 7.016268 ACAGAAGGAGTAAAAACATGACCTCTA 59.984 37.037 0.00 0.00 0.00 2.43
4188 5218 7.878127 CAGAAGGAGTAAAAACATGACCTCTAA 59.122 37.037 0.00 0.00 0.00 2.10
4189 5219 7.878644 AGAAGGAGTAAAAACATGACCTCTAAC 59.121 37.037 0.00 0.00 0.00 2.34
4190 5220 7.074653 AGGAGTAAAAACATGACCTCTAACA 57.925 36.000 0.00 0.00 0.00 2.41
4191 5221 7.162082 AGGAGTAAAAACATGACCTCTAACAG 58.838 38.462 0.00 0.00 0.00 3.16
4199 5229 5.580998 ACATGACCTCTAACAGAAGGAGTA 58.419 41.667 0.00 0.00 0.00 2.59
4201 5231 6.497259 ACATGACCTCTAACAGAAGGAGTAAA 59.503 38.462 0.00 0.00 0.00 2.01
4202 5232 6.989155 TGACCTCTAACAGAAGGAGTAAAA 57.011 37.500 0.00 0.00 0.00 1.52
4250 5280 4.222145 AGAACACATACGGGACAACAGTAT 59.778 41.667 0.00 0.00 0.00 2.12
4279 5309 1.348064 CACTGGACTTGGGGTCAGTA 58.652 55.000 0.00 0.00 46.16 2.74
4553 5594 1.826096 GGCGAGAGGAGGAAGTAGTTT 59.174 52.381 0.00 0.00 0.00 2.66
4554 5595 2.159212 GGCGAGAGGAGGAAGTAGTTTC 60.159 54.545 0.00 0.00 34.93 2.78
4610 5653 0.320771 GTGCAAGAGAAGGAGGCGAA 60.321 55.000 0.00 0.00 0.00 4.70
4638 5681 2.269241 GGGAGCTGAAGGGAACGG 59.731 66.667 0.00 0.00 0.00 4.44
4640 5683 2.291043 GGAGCTGAAGGGAACGGGA 61.291 63.158 0.00 0.00 0.00 5.14
4658 5701 2.028020 GGGAGAGACGAAATGAACAGGT 60.028 50.000 0.00 0.00 0.00 4.00
4660 5703 4.322499 GGGAGAGACGAAATGAACAGGTAA 60.322 45.833 0.00 0.00 0.00 2.85
4699 5743 8.721478 GCAATGTTCGTATTCAATATCCACTAT 58.279 33.333 0.00 0.00 0.00 2.12
4718 5764 6.876257 CCACTATAGCAAAACTTCTCAACTCT 59.124 38.462 0.00 0.00 0.00 3.24
4769 5820 4.614993 CGTGGCAAAAATTTAGACATCGGT 60.615 41.667 2.78 0.00 0.00 4.69
4809 5875 4.338539 GTCGTGACGAGGCGTGGT 62.339 66.667 8.41 0.00 41.37 4.16
4866 5937 2.943690 CCCTCTTGTTCTCATGCTCATG 59.056 50.000 3.55 3.55 40.09 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.024547 AGCTCGACCTTTAGCATCAGTA 58.975 45.455 0.00 0.00 41.32 2.74
1 2 1.827969 AGCTCGACCTTTAGCATCAGT 59.172 47.619 0.00 0.00 41.32 3.41
2 3 2.200067 CAGCTCGACCTTTAGCATCAG 58.800 52.381 0.00 0.00 41.32 2.90
3 4 1.550524 ACAGCTCGACCTTTAGCATCA 59.449 47.619 0.00 0.00 41.32 3.07
16 17 2.095668 ACGAGTCACTTTCTACAGCTCG 60.096 50.000 9.10 9.10 46.37 5.03
44 45 2.159366 ACCAGCTCGAGATCGTTACAAG 60.159 50.000 18.75 0.00 40.80 3.16
152 154 5.299531 TCTTCAGTCGAGAAAGAAGAAGTCA 59.700 40.000 13.28 0.00 42.33 3.41
213 215 9.490663 GCTTTGTATGTAGTTCATGTTGTAATC 57.509 33.333 0.00 0.00 37.91 1.75
216 218 7.971183 TGCTTTGTATGTAGTTCATGTTGTA 57.029 32.000 0.00 0.00 37.91 2.41
294 296 8.332464 CGCAAAAAGAAAGATATTACATACGGA 58.668 33.333 0.00 0.00 0.00 4.69
295 297 8.332464 TCGCAAAAAGAAAGATATTACATACGG 58.668 33.333 0.00 0.00 0.00 4.02
296 298 9.358123 CTCGCAAAAAGAAAGATATTACATACG 57.642 33.333 0.00 0.00 0.00 3.06
299 301 9.994432 CTTCTCGCAAAAAGAAAGATATTACAT 57.006 29.630 0.00 0.00 32.60 2.29
300 302 7.962918 GCTTCTCGCAAAAAGAAAGATATTACA 59.037 33.333 0.00 0.00 38.92 2.41
301 303 8.316777 GCTTCTCGCAAAAAGAAAGATATTAC 57.683 34.615 0.00 0.00 38.92 1.89
318 320 3.491267 GGTTACATACAGATGCTTCTCGC 59.509 47.826 0.00 0.00 36.43 5.03
319 321 3.731216 CGGTTACATACAGATGCTTCTCG 59.269 47.826 0.00 0.00 36.43 4.04
320 322 4.933330 TCGGTTACATACAGATGCTTCTC 58.067 43.478 0.00 0.00 36.43 2.87
321 323 5.537300 ATCGGTTACATACAGATGCTTCT 57.463 39.130 0.00 0.00 39.72 2.85
322 324 8.027189 TGTATATCGGTTACATACAGATGCTTC 58.973 37.037 0.00 0.00 41.05 3.86
323 325 7.892609 TGTATATCGGTTACATACAGATGCTT 58.107 34.615 0.00 0.00 41.05 3.91
324 326 7.462571 TGTATATCGGTTACATACAGATGCT 57.537 36.000 0.00 0.00 41.05 3.79
325 327 8.433126 GTTTGTATATCGGTTACATACAGATGC 58.567 37.037 0.00 0.00 41.05 3.91
326 328 9.471084 TGTTTGTATATCGGTTACATACAGATG 57.529 33.333 8.84 0.00 41.05 2.90
330 332 9.100554 CCTTTGTTTGTATATCGGTTACATACA 57.899 33.333 8.84 8.84 38.71 2.29
331 333 8.553696 CCCTTTGTTTGTATATCGGTTACATAC 58.446 37.037 0.00 0.00 34.26 2.39
339 341 9.720769 ATACTATTCCCTTTGTTTGTATATCGG 57.279 33.333 0.00 0.00 0.00 4.18
381 383 3.099905 AGTACTTGCTAGCTCATCCACA 58.900 45.455 17.23 0.00 0.00 4.17
382 384 3.491792 GGAGTACTTGCTAGCTCATCCAC 60.492 52.174 17.23 6.48 0.00 4.02
436 438 9.813826 CCTCCCCATTTAGATCACTATTTTAAT 57.186 33.333 0.00 0.00 0.00 1.40
437 439 8.224720 CCCTCCCCATTTAGATCACTATTTTAA 58.775 37.037 0.00 0.00 0.00 1.52
438 440 7.694293 GCCCTCCCCATTTAGATCACTATTTTA 60.694 40.741 0.00 0.00 0.00 1.52
439 441 6.614657 CCCTCCCCATTTAGATCACTATTTT 58.385 40.000 0.00 0.00 0.00 1.82
440 442 5.458215 GCCCTCCCCATTTAGATCACTATTT 60.458 44.000 0.00 0.00 0.00 1.40
441 443 4.043435 GCCCTCCCCATTTAGATCACTATT 59.957 45.833 0.00 0.00 0.00 1.73
442 444 3.589288 GCCCTCCCCATTTAGATCACTAT 59.411 47.826 0.00 0.00 0.00 2.12
443 445 2.979678 GCCCTCCCCATTTAGATCACTA 59.020 50.000 0.00 0.00 0.00 2.74
444 446 1.777272 GCCCTCCCCATTTAGATCACT 59.223 52.381 0.00 0.00 0.00 3.41
445 447 1.202940 GGCCCTCCCCATTTAGATCAC 60.203 57.143 0.00 0.00 0.00 3.06
446 448 1.149101 GGCCCTCCCCATTTAGATCA 58.851 55.000 0.00 0.00 0.00 2.92
447 449 0.036875 CGGCCCTCCCCATTTAGATC 59.963 60.000 0.00 0.00 0.00 2.75
448 450 0.697854 ACGGCCCTCCCCATTTAGAT 60.698 55.000 0.00 0.00 0.00 1.98
449 451 0.917333 AACGGCCCTCCCCATTTAGA 60.917 55.000 0.00 0.00 0.00 2.10
450 452 0.033503 AAACGGCCCTCCCCATTTAG 60.034 55.000 0.00 0.00 0.00 1.85
451 453 0.410270 AAAACGGCCCTCCCCATTTA 59.590 50.000 0.00 0.00 0.00 1.40
452 454 1.157513 AAAACGGCCCTCCCCATTT 59.842 52.632 0.00 0.00 0.00 2.32
453 455 1.609210 CAAAACGGCCCTCCCCATT 60.609 57.895 0.00 0.00 0.00 3.16
454 456 2.037208 CAAAACGGCCCTCCCCAT 59.963 61.111 0.00 0.00 0.00 4.00
455 457 4.293671 CCAAAACGGCCCTCCCCA 62.294 66.667 0.00 0.00 0.00 4.96
464 466 4.766404 AAAGACATAAGAGCCAAAACGG 57.234 40.909 0.00 0.00 38.11 4.44
465 467 7.136119 TGTAAAAAGACATAAGAGCCAAAACG 58.864 34.615 0.00 0.00 0.00 3.60
466 468 8.349983 TCTGTAAAAAGACATAAGAGCCAAAAC 58.650 33.333 0.00 0.00 0.00 2.43
467 469 8.458573 TCTGTAAAAAGACATAAGAGCCAAAA 57.541 30.769 0.00 0.00 0.00 2.44
468 470 7.174946 CCTCTGTAAAAAGACATAAGAGCCAAA 59.825 37.037 0.00 0.00 0.00 3.28
469 471 6.655003 CCTCTGTAAAAAGACATAAGAGCCAA 59.345 38.462 0.00 0.00 0.00 4.52
470 472 6.173339 CCTCTGTAAAAAGACATAAGAGCCA 58.827 40.000 0.00 0.00 0.00 4.75
471 473 5.586643 CCCTCTGTAAAAAGACATAAGAGCC 59.413 44.000 0.00 0.00 0.00 4.70
472 474 6.407202 TCCCTCTGTAAAAAGACATAAGAGC 58.593 40.000 0.00 0.00 0.00 4.09
473 475 7.616313 ACTCCCTCTGTAAAAAGACATAAGAG 58.384 38.462 0.00 0.00 0.00 2.85
474 476 7.554959 ACTCCCTCTGTAAAAAGACATAAGA 57.445 36.000 0.00 0.00 0.00 2.10
475 477 8.532819 AGTACTCCCTCTGTAAAAAGACATAAG 58.467 37.037 0.00 0.00 0.00 1.73
476 478 8.431910 AGTACTCCCTCTGTAAAAAGACATAA 57.568 34.615 0.00 0.00 0.00 1.90
477 479 9.186837 CTAGTACTCCCTCTGTAAAAAGACATA 57.813 37.037 0.00 0.00 0.00 2.29
478 480 6.936968 AGTACTCCCTCTGTAAAAAGACAT 57.063 37.500 0.00 0.00 0.00 3.06
479 481 6.071503 GCTAGTACTCCCTCTGTAAAAAGACA 60.072 42.308 0.00 0.00 0.00 3.41
480 482 6.071503 TGCTAGTACTCCCTCTGTAAAAAGAC 60.072 42.308 0.00 0.00 0.00 3.01
481 483 6.014647 TGCTAGTACTCCCTCTGTAAAAAGA 58.985 40.000 0.00 0.00 0.00 2.52
482 484 6.282199 TGCTAGTACTCCCTCTGTAAAAAG 57.718 41.667 0.00 0.00 0.00 2.27
483 485 6.495872 TCTTGCTAGTACTCCCTCTGTAAAAA 59.504 38.462 0.00 0.00 0.00 1.94
484 486 6.014647 TCTTGCTAGTACTCCCTCTGTAAAA 58.985 40.000 0.00 0.00 0.00 1.52
485 487 5.577100 TCTTGCTAGTACTCCCTCTGTAAA 58.423 41.667 0.00 0.00 0.00 2.01
486 488 5.045066 TCTCTTGCTAGTACTCCCTCTGTAA 60.045 44.000 0.00 0.00 0.00 2.41
487 489 4.473922 TCTCTTGCTAGTACTCCCTCTGTA 59.526 45.833 0.00 0.00 0.00 2.74
488 490 3.267291 TCTCTTGCTAGTACTCCCTCTGT 59.733 47.826 0.00 0.00 0.00 3.41
489 491 3.892284 TCTCTTGCTAGTACTCCCTCTG 58.108 50.000 0.00 0.00 0.00 3.35
490 492 4.228666 TCTTCTCTTGCTAGTACTCCCTCT 59.771 45.833 0.00 0.00 0.00 3.69
491 493 4.528920 TCTTCTCTTGCTAGTACTCCCTC 58.471 47.826 0.00 0.00 0.00 4.30
492 494 4.594675 TCTTCTCTTGCTAGTACTCCCT 57.405 45.455 0.00 0.00 0.00 4.20
493 495 5.662674 TTTCTTCTCTTGCTAGTACTCCC 57.337 43.478 0.00 0.00 0.00 4.30
494 496 7.324178 TCATTTTCTTCTCTTGCTAGTACTCC 58.676 38.462 0.00 0.00 0.00 3.85
495 497 8.764524 TTCATTTTCTTCTCTTGCTAGTACTC 57.235 34.615 0.00 0.00 0.00 2.59
496 498 7.821846 CCTTCATTTTCTTCTCTTGCTAGTACT 59.178 37.037 0.00 0.00 0.00 2.73
497 499 7.413548 GCCTTCATTTTCTTCTCTTGCTAGTAC 60.414 40.741 0.00 0.00 0.00 2.73
498 500 6.595716 GCCTTCATTTTCTTCTCTTGCTAGTA 59.404 38.462 0.00 0.00 0.00 1.82
499 501 5.414144 GCCTTCATTTTCTTCTCTTGCTAGT 59.586 40.000 0.00 0.00 0.00 2.57
500 502 5.413833 TGCCTTCATTTTCTTCTCTTGCTAG 59.586 40.000 0.00 0.00 0.00 3.42
501 503 5.316167 TGCCTTCATTTTCTTCTCTTGCTA 58.684 37.500 0.00 0.00 0.00 3.49
502 504 4.147321 TGCCTTCATTTTCTTCTCTTGCT 58.853 39.130 0.00 0.00 0.00 3.91
503 505 4.510038 TGCCTTCATTTTCTTCTCTTGC 57.490 40.909 0.00 0.00 0.00 4.01
504 506 6.016443 AGACTTGCCTTCATTTTCTTCTCTTG 60.016 38.462 0.00 0.00 0.00 3.02
505 507 6.016443 CAGACTTGCCTTCATTTTCTTCTCTT 60.016 38.462 0.00 0.00 0.00 2.85
506 508 5.472820 CAGACTTGCCTTCATTTTCTTCTCT 59.527 40.000 0.00 0.00 0.00 3.10
507 509 5.697826 CAGACTTGCCTTCATTTTCTTCTC 58.302 41.667 0.00 0.00 0.00 2.87
508 510 4.022503 GCAGACTTGCCTTCATTTTCTTCT 60.023 41.667 0.00 0.00 44.74 2.85
509 511 4.233005 GCAGACTTGCCTTCATTTTCTTC 58.767 43.478 0.00 0.00 44.74 2.87
510 512 4.248691 GCAGACTTGCCTTCATTTTCTT 57.751 40.909 0.00 0.00 44.74 2.52
511 513 3.930634 GCAGACTTGCCTTCATTTTCT 57.069 42.857 0.00 0.00 44.74 2.52
548 550 6.677920 GCCATGCGTTGAATATCTTGTAGTTT 60.678 38.462 0.00 0.00 0.00 2.66
571 573 1.039856 AATTTGATACATGGCCGGCC 58.960 50.000 39.40 39.40 0.00 6.13
574 577 2.287788 GCCTCAATTTGATACATGGCCG 60.288 50.000 13.11 0.00 29.49 6.13
587 590 5.469479 CGTGGACAAAATTTAGCCTCAATT 58.531 37.500 0.00 0.00 0.00 2.32
604 607 5.004345 GCAAACATGTAAATTATGCGTGGAC 59.996 40.000 0.00 0.00 35.20 4.02
606 609 5.101628 AGCAAACATGTAAATTATGCGTGG 58.898 37.500 0.00 0.00 35.20 4.94
619 622 8.632679 TCTTTTCTCTTCATTTAGCAAACATGT 58.367 29.630 0.00 0.00 0.00 3.21
729 1400 1.170290 AGGTTGCGCGGTTTTAGCTT 61.170 50.000 8.83 0.00 0.00 3.74
738 1409 0.098728 CCAGAAATAAGGTTGCGCGG 59.901 55.000 8.83 0.00 0.00 6.46
739 1410 1.083489 TCCAGAAATAAGGTTGCGCG 58.917 50.000 0.00 0.00 0.00 6.86
741 1412 4.731773 GCTTGATCCAGAAATAAGGTTGCG 60.732 45.833 0.00 0.00 0.00 4.85
746 1417 8.908786 TTATGTAGCTTGATCCAGAAATAAGG 57.091 34.615 0.00 0.00 0.00 2.69
799 1470 8.418597 AGTACTAATAGAAACAGTGGACTTGA 57.581 34.615 0.00 0.00 0.00 3.02
821 1574 9.846248 GTCTTAGTAGTACCAATTTTTCGAGTA 57.154 33.333 0.00 0.00 0.00 2.59
822 1575 8.362639 TGTCTTAGTAGTACCAATTTTTCGAGT 58.637 33.333 0.00 0.00 0.00 4.18
823 1576 8.752766 TGTCTTAGTAGTACCAATTTTTCGAG 57.247 34.615 0.00 0.00 0.00 4.04
829 1582 9.379791 GCTGTTATGTCTTAGTAGTACCAATTT 57.620 33.333 0.00 0.00 0.00 1.82
830 1583 7.705325 CGCTGTTATGTCTTAGTAGTACCAATT 59.295 37.037 0.00 0.00 0.00 2.32
831 1584 7.147949 ACGCTGTTATGTCTTAGTAGTACCAAT 60.148 37.037 0.00 0.00 0.00 3.16
832 1585 6.151648 ACGCTGTTATGTCTTAGTAGTACCAA 59.848 38.462 0.00 0.00 0.00 3.67
833 1586 5.649395 ACGCTGTTATGTCTTAGTAGTACCA 59.351 40.000 0.00 0.00 0.00 3.25
834 1587 6.129053 ACGCTGTTATGTCTTAGTAGTACC 57.871 41.667 0.00 0.00 0.00 3.34
835 1588 5.900789 CGACGCTGTTATGTCTTAGTAGTAC 59.099 44.000 0.00 0.00 32.93 2.73
836 1589 5.582269 ACGACGCTGTTATGTCTTAGTAGTA 59.418 40.000 0.00 0.00 32.93 1.82
837 1590 4.394300 ACGACGCTGTTATGTCTTAGTAGT 59.606 41.667 0.00 0.00 32.93 2.73
838 1591 4.906423 ACGACGCTGTTATGTCTTAGTAG 58.094 43.478 0.00 0.00 32.93 2.57
845 1598 3.241995 GGATGAAACGACGCTGTTATGTC 60.242 47.826 0.00 0.00 0.00 3.06
868 1621 1.541588 GCAGGTGGTTCAACAGGAATC 59.458 52.381 0.00 0.00 37.93 2.52
945 1698 1.200519 TTGGGTCCCAGGACGATAAG 58.799 55.000 11.40 0.00 45.41 1.73
957 1710 5.298527 GTGGTTGCTTATATAGTTTGGGTCC 59.701 44.000 0.00 0.00 0.00 4.46
958 1711 5.298527 GGTGGTTGCTTATATAGTTTGGGTC 59.701 44.000 0.00 0.00 0.00 4.46
959 1712 5.198207 GGTGGTTGCTTATATAGTTTGGGT 58.802 41.667 0.00 0.00 0.00 4.51
960 1713 4.583073 GGGTGGTTGCTTATATAGTTTGGG 59.417 45.833 0.00 0.00 0.00 4.12
961 1714 5.445964 AGGGTGGTTGCTTATATAGTTTGG 58.554 41.667 0.00 0.00 0.00 3.28
962 1715 5.236478 CGAGGGTGGTTGCTTATATAGTTTG 59.764 44.000 0.00 0.00 0.00 2.93
963 1716 5.365619 CGAGGGTGGTTGCTTATATAGTTT 58.634 41.667 0.00 0.00 0.00 2.66
964 1717 4.742743 GCGAGGGTGGTTGCTTATATAGTT 60.743 45.833 0.00 0.00 0.00 2.24
966 1719 3.006967 AGCGAGGGTGGTTGCTTATATAG 59.993 47.826 0.00 0.00 32.87 1.31
968 1721 1.768870 AGCGAGGGTGGTTGCTTATAT 59.231 47.619 0.00 0.00 32.87 0.86
969 1722 1.134521 CAGCGAGGGTGGTTGCTTATA 60.135 52.381 0.00 0.00 34.71 0.98
970 1723 0.392998 CAGCGAGGGTGGTTGCTTAT 60.393 55.000 0.00 0.00 34.71 1.73
971 1724 1.003839 CAGCGAGGGTGGTTGCTTA 60.004 57.895 0.00 0.00 34.71 3.09
972 1725 2.281761 CAGCGAGGGTGGTTGCTT 60.282 61.111 0.00 0.00 34.71 3.91
1089 1963 1.376609 GGGTGGGTTGCTAATGCTCG 61.377 60.000 0.00 0.00 40.48 5.03
1090 1964 1.376609 CGGGTGGGTTGCTAATGCTC 61.377 60.000 0.00 0.00 40.48 4.26
1091 1965 1.378514 CGGGTGGGTTGCTAATGCT 60.379 57.895 0.00 0.00 40.48 3.79
1092 1966 1.377987 TCGGGTGGGTTGCTAATGC 60.378 57.895 0.00 0.00 40.20 3.56
1093 1967 1.029947 GGTCGGGTGGGTTGCTAATG 61.030 60.000 0.00 0.00 0.00 1.90
1094 1968 1.301954 GGTCGGGTGGGTTGCTAAT 59.698 57.895 0.00 0.00 0.00 1.73
1095 1969 2.751688 GGTCGGGTGGGTTGCTAA 59.248 61.111 0.00 0.00 0.00 3.09
1096 1970 3.324108 GGGTCGGGTGGGTTGCTA 61.324 66.667 0.00 0.00 0.00 3.49
1343 2217 7.001099 TGGAACCTCGTAGTAGAAGAATTTT 57.999 36.000 0.00 0.00 0.00 1.82
1362 2236 3.149196 TCAAAGGAACAGAGCATGGAAC 58.851 45.455 0.00 0.00 0.00 3.62
1378 2252 4.702131 CCCACCTTTCCACTAGAATCAAAG 59.298 45.833 0.00 0.00 33.44 2.77
1411 2285 0.178987 ATCTCCCGCATAGAGTCCGT 60.179 55.000 0.00 0.00 32.93 4.69
1414 2288 1.271102 GTCCATCTCCCGCATAGAGTC 59.729 57.143 0.00 0.00 32.93 3.36
1416 2290 1.332195 TGTCCATCTCCCGCATAGAG 58.668 55.000 0.00 0.00 0.00 2.43
1436 2310 3.666902 CGCATCGAATCGACAAAAAGGTT 60.667 43.478 7.77 0.00 39.18 3.50
1440 2314 1.129624 CCCGCATCGAATCGACAAAAA 59.870 47.619 7.77 0.00 39.18 1.94
1480 2354 0.602638 ACCAGAATCGCGCAAAGTGA 60.603 50.000 8.75 0.00 44.33 3.41
1481 2355 0.238289 AACCAGAATCGCGCAAAGTG 59.762 50.000 8.75 0.00 0.00 3.16
1483 2357 0.179189 GGAACCAGAATCGCGCAAAG 60.179 55.000 8.75 0.00 0.00 2.77
1484 2358 1.873165 GGAACCAGAATCGCGCAAA 59.127 52.632 8.75 0.00 0.00 3.68
1521 2397 1.228862 ACACTTCCATGGCCCAACC 60.229 57.895 6.96 0.00 39.84 3.77
1524 2400 1.561769 ATCGACACTTCCATGGCCCA 61.562 55.000 6.96 0.00 0.00 5.36
1533 2415 4.918037 ACACGTTCCTATATCGACACTTC 58.082 43.478 0.00 0.00 0.00 3.01
1543 2428 3.548616 CGCCAATACGACACGTTCCTATA 60.549 47.826 1.53 0.00 41.54 1.31
1577 2462 4.805192 GTGTTTCACTGTTACTAACACCGA 59.195 41.667 0.00 0.00 41.49 4.69
1578 2463 4.807304 AGTGTTTCACTGTTACTAACACCG 59.193 41.667 11.48 0.00 45.90 4.94
1591 2476 4.339247 CACCAATTTCTCCAGTGTTTCACT 59.661 41.667 0.00 0.00 46.51 3.41
1598 2483 3.480470 ACTGTCACCAATTTCTCCAGTG 58.520 45.455 0.00 0.00 31.01 3.66
1600 2485 7.331026 TCTATTACTGTCACCAATTTCTCCAG 58.669 38.462 0.00 0.00 0.00 3.86
1634 2519 1.279496 AGACAGCCAGGCATAAGTGA 58.721 50.000 15.80 0.00 0.00 3.41
1654 2539 1.302033 CGCAGCAAGAACCTCACCT 60.302 57.895 0.00 0.00 0.00 4.00
1677 2562 3.485463 TGAACCCCATAAGCTTATCCG 57.515 47.619 16.21 9.20 0.00 4.18
1687 2572 1.828979 GGAAGCGTTTGAACCCCATA 58.171 50.000 0.00 0.00 0.00 2.74
1688 2573 1.241315 CGGAAGCGTTTGAACCCCAT 61.241 55.000 0.00 0.00 0.00 4.00
1696 2581 2.252260 CTGCACCGGAAGCGTTTG 59.748 61.111 9.46 0.00 33.85 2.93
1700 2585 3.114616 CAGACTGCACCGGAAGCG 61.115 66.667 9.46 10.78 33.85 4.68
1729 2614 8.978472 ACTCCAGTAAACAAGCTATTAGTATGA 58.022 33.333 0.00 0.00 0.00 2.15
1732 2617 7.039882 GCACTCCAGTAAACAAGCTATTAGTA 58.960 38.462 0.00 0.00 0.00 1.82
1757 2642 4.054671 GTCCGCTATCTCTCAATCCAAAG 58.945 47.826 0.00 0.00 0.00 2.77
1795 2680 1.676006 CGCGGCTGGGAAAATAAGATT 59.324 47.619 2.84 0.00 0.00 2.40
1833 2719 6.992123 CCTACCATACTATGCTGATTCAACAA 59.008 38.462 0.00 0.00 0.00 2.83
1909 2799 5.591643 ACACAGTTTAGTTCGTTGCATAG 57.408 39.130 0.00 0.00 0.00 2.23
1954 2847 6.647481 TGCATTGAGAAACCATCAATTTCAAG 59.353 34.615 0.00 0.00 43.20 3.02
1960 2853 4.346730 TCCTGCATTGAGAAACCATCAAT 58.653 39.130 0.00 0.00 45.88 2.57
1985 2878 1.131638 TGGGAGTAGATGCATCACCC 58.868 55.000 28.29 28.29 36.72 4.61
2264 3165 7.488471 GGACCATACATAATATCTAGCACGAAC 59.512 40.741 0.00 0.00 0.00 3.95
2265 3166 7.396339 AGGACCATACATAATATCTAGCACGAA 59.604 37.037 0.00 0.00 0.00 3.85
2268 3169 9.726438 AAAAGGACCATACATAATATCTAGCAC 57.274 33.333 0.00 0.00 0.00 4.40
2514 3442 8.516811 TGACTCTAGAATACTTCGAACAAAAC 57.483 34.615 0.00 0.00 34.02 2.43
2632 3569 3.563808 TCAAAGTTGGAGGAACATTGACG 59.436 43.478 0.00 0.00 43.78 4.35
2644 3581 4.067896 GAGAGTGCAATCTCAAAGTTGGA 58.932 43.478 33.03 0.00 44.32 3.53
2689 3626 4.402583 TGAAGAAATAAAATGTCAGCGCG 58.597 39.130 0.00 0.00 0.00 6.86
2692 3629 8.084684 AGAACCTTGAAGAAATAAAATGTCAGC 58.915 33.333 0.00 0.00 0.00 4.26
2710 3649 5.715070 AGAAGATTCGTAGTGAGAACCTTG 58.285 41.667 0.00 0.00 31.97 3.61
2737 3676 1.005215 CCAGGAAGCAGGAATGGAGTT 59.995 52.381 0.00 0.00 32.55 3.01
2834 3783 6.390721 TCTTCTGTAGAAATAGCACACTGAC 58.609 40.000 0.00 0.00 33.07 3.51
2852 3801 9.710900 AAAAAGGTAAATAAGGCAATTCTTCTG 57.289 29.630 0.00 0.00 0.00 3.02
2853 3802 9.710900 CAAAAAGGTAAATAAGGCAATTCTTCT 57.289 29.630 0.00 0.00 0.00 2.85
2854 3803 8.443160 GCAAAAAGGTAAATAAGGCAATTCTTC 58.557 33.333 0.00 0.00 0.00 2.87
2855 3804 8.156820 AGCAAAAAGGTAAATAAGGCAATTCTT 58.843 29.630 0.00 0.00 0.00 2.52
2860 3809 6.587273 ACAAGCAAAAAGGTAAATAAGGCAA 58.413 32.000 0.00 0.00 0.00 4.52
2861 3810 6.168270 ACAAGCAAAAAGGTAAATAAGGCA 57.832 33.333 0.00 0.00 0.00 4.75
2862 3811 5.637810 GGACAAGCAAAAAGGTAAATAAGGC 59.362 40.000 0.00 0.00 0.00 4.35
2866 3878 7.589958 TTCAGGACAAGCAAAAAGGTAAATA 57.410 32.000 0.00 0.00 0.00 1.40
2940 3959 1.205893 AGCACTAAGTAGCAGGCAGAC 59.794 52.381 0.00 0.00 0.00 3.51
2984 4006 6.187682 ACAAATATTACAGGGGGAAGACTTG 58.812 40.000 0.00 0.00 0.00 3.16
2985 4007 6.402981 ACAAATATTACAGGGGGAAGACTT 57.597 37.500 0.00 0.00 0.00 3.01
3796 4822 0.178987 AGGACAGTGACCTGACGAGT 60.179 55.000 13.63 0.00 41.50 4.18
3803 4829 0.674534 GACGAACAGGACAGTGACCT 59.325 55.000 8.46 8.46 38.40 3.85
3837 4863 2.392933 TAGCGCCACGAAAACAAAAG 57.607 45.000 2.29 0.00 0.00 2.27
3903 4933 4.261801 CCTTCTTATCTCGGCCAGAAAAA 58.738 43.478 2.24 3.80 33.62 1.94
3912 4942 6.210784 TCCAACATATACCCTTCTTATCTCGG 59.789 42.308 0.00 0.00 0.00 4.63
3971 5001 6.287107 AGTCATGCTTTATTCGGTATTTCG 57.713 37.500 0.00 0.00 0.00 3.46
3979 5009 9.261180 TCTCCTATTTTAGTCATGCTTTATTCG 57.739 33.333 0.00 0.00 0.00 3.34
4075 5105 8.493607 TCATATATGCTGCTTGCCCTAAATATA 58.506 33.333 7.92 0.00 42.00 0.86
4080 5110 4.639078 TCATATATGCTGCTTGCCCTAA 57.361 40.909 7.92 0.00 42.00 2.69
4108 5138 6.113411 ACTGTTTGCCCTACATATGTTAGAC 58.887 40.000 14.77 2.86 0.00 2.59
4109 5139 6.308015 ACTGTTTGCCCTACATATGTTAGA 57.692 37.500 14.77 0.00 0.00 2.10
4136 5166 4.021016 AGAGGTCATGTCACAGTTCCTTAC 60.021 45.833 0.00 0.00 0.00 2.34
4137 5167 4.160329 AGAGGTCATGTCACAGTTCCTTA 58.840 43.478 0.00 0.00 0.00 2.69
4147 5177 4.416516 TCCTTCTGTTAGAGGTCATGTCA 58.583 43.478 0.00 0.00 0.00 3.58
4148 5178 4.464597 ACTCCTTCTGTTAGAGGTCATGTC 59.535 45.833 0.00 0.00 31.70 3.06
4149 5179 4.421131 ACTCCTTCTGTTAGAGGTCATGT 58.579 43.478 0.00 0.00 31.70 3.21
4150 5180 6.531503 TTACTCCTTCTGTTAGAGGTCATG 57.468 41.667 0.00 0.00 31.70 3.07
4151 5181 7.554959 TTTTACTCCTTCTGTTAGAGGTCAT 57.445 36.000 0.00 0.00 31.70 3.06
4152 5182 6.989155 TTTTACTCCTTCTGTTAGAGGTCA 57.011 37.500 0.00 0.00 31.70 4.02
4153 5183 7.215085 TGTTTTTACTCCTTCTGTTAGAGGTC 58.785 38.462 0.00 0.00 31.70 3.85
4154 5184 7.133133 TGTTTTTACTCCTTCTGTTAGAGGT 57.867 36.000 0.00 0.00 31.70 3.85
4155 5185 7.878127 TCATGTTTTTACTCCTTCTGTTAGAGG 59.122 37.037 0.00 0.00 31.70 3.69
4156 5186 8.713271 GTCATGTTTTTACTCCTTCTGTTAGAG 58.287 37.037 0.00 0.00 0.00 2.43
4157 5187 7.660208 GGTCATGTTTTTACTCCTTCTGTTAGA 59.340 37.037 0.00 0.00 0.00 2.10
4158 5188 7.661847 AGGTCATGTTTTTACTCCTTCTGTTAG 59.338 37.037 0.00 0.00 0.00 2.34
4159 5189 7.514721 AGGTCATGTTTTTACTCCTTCTGTTA 58.485 34.615 0.00 0.00 0.00 2.41
4160 5190 6.365520 AGGTCATGTTTTTACTCCTTCTGTT 58.634 36.000 0.00 0.00 0.00 3.16
4161 5191 5.941788 AGGTCATGTTTTTACTCCTTCTGT 58.058 37.500 0.00 0.00 0.00 3.41
4162 5192 6.234177 AGAGGTCATGTTTTTACTCCTTCTG 58.766 40.000 0.00 0.00 0.00 3.02
4163 5193 6.441088 AGAGGTCATGTTTTTACTCCTTCT 57.559 37.500 0.00 0.00 0.00 2.85
4164 5194 7.660208 TGTTAGAGGTCATGTTTTTACTCCTTC 59.340 37.037 0.00 0.00 0.00 3.46
4165 5195 7.514721 TGTTAGAGGTCATGTTTTTACTCCTT 58.485 34.615 0.00 0.00 0.00 3.36
4166 5196 7.016268 TCTGTTAGAGGTCATGTTTTTACTCCT 59.984 37.037 0.00 0.00 0.00 3.69
4167 5197 7.159372 TCTGTTAGAGGTCATGTTTTTACTCC 58.841 38.462 0.00 0.00 0.00 3.85
4168 5198 8.603242 TTCTGTTAGAGGTCATGTTTTTACTC 57.397 34.615 0.00 0.00 0.00 2.59
4169 5199 7.661847 CCTTCTGTTAGAGGTCATGTTTTTACT 59.338 37.037 0.00 0.00 0.00 2.24
4170 5200 7.660208 TCCTTCTGTTAGAGGTCATGTTTTTAC 59.340 37.037 0.00 0.00 0.00 2.01
4171 5201 7.741785 TCCTTCTGTTAGAGGTCATGTTTTTA 58.258 34.615 0.00 0.00 0.00 1.52
4172 5202 6.601332 TCCTTCTGTTAGAGGTCATGTTTTT 58.399 36.000 0.00 0.00 0.00 1.94
4173 5203 6.183361 ACTCCTTCTGTTAGAGGTCATGTTTT 60.183 38.462 0.00 0.00 31.70 2.43
4174 5204 5.308237 ACTCCTTCTGTTAGAGGTCATGTTT 59.692 40.000 0.00 0.00 31.70 2.83
4175 5205 4.841246 ACTCCTTCTGTTAGAGGTCATGTT 59.159 41.667 0.00 0.00 31.70 2.71
4176 5206 4.421131 ACTCCTTCTGTTAGAGGTCATGT 58.579 43.478 0.00 0.00 31.70 3.21
4177 5207 6.531503 TTACTCCTTCTGTTAGAGGTCATG 57.468 41.667 0.00 0.00 31.70 3.07
4178 5208 7.554959 TTTTACTCCTTCTGTTAGAGGTCAT 57.445 36.000 0.00 0.00 31.70 3.06
4179 5209 6.989155 TTTTACTCCTTCTGTTAGAGGTCA 57.011 37.500 0.00 0.00 31.70 4.02
4180 5210 7.215085 TGTTTTTACTCCTTCTGTTAGAGGTC 58.785 38.462 0.00 0.00 31.70 3.85
4181 5211 7.133133 TGTTTTTACTCCTTCTGTTAGAGGT 57.867 36.000 0.00 0.00 31.70 3.85
4182 5212 7.878127 TCATGTTTTTACTCCTTCTGTTAGAGG 59.122 37.037 0.00 0.00 31.70 3.69
4183 5213 8.713271 GTCATGTTTTTACTCCTTCTGTTAGAG 58.287 37.037 0.00 0.00 0.00 2.43
4184 5214 7.660208 GGTCATGTTTTTACTCCTTCTGTTAGA 59.340 37.037 0.00 0.00 0.00 2.10
4185 5215 7.661847 AGGTCATGTTTTTACTCCTTCTGTTAG 59.338 37.037 0.00 0.00 0.00 2.34
4186 5216 7.514721 AGGTCATGTTTTTACTCCTTCTGTTA 58.485 34.615 0.00 0.00 0.00 2.41
4187 5217 6.365520 AGGTCATGTTTTTACTCCTTCTGTT 58.634 36.000 0.00 0.00 0.00 3.16
4188 5218 5.941788 AGGTCATGTTTTTACTCCTTCTGT 58.058 37.500 0.00 0.00 0.00 3.41
4189 5219 6.234177 AGAGGTCATGTTTTTACTCCTTCTG 58.766 40.000 0.00 0.00 0.00 3.02
4190 5220 6.441088 AGAGGTCATGTTTTTACTCCTTCT 57.559 37.500 0.00 0.00 0.00 2.85
4191 5221 7.660208 TGTTAGAGGTCATGTTTTTACTCCTTC 59.340 37.037 0.00 0.00 0.00 3.46
4199 5229 6.601332 TCCTTCTGTTAGAGGTCATGTTTTT 58.399 36.000 0.00 0.00 0.00 1.94
4201 5231 5.308237 ACTCCTTCTGTTAGAGGTCATGTTT 59.692 40.000 0.00 0.00 31.70 2.83
4202 5232 4.841246 ACTCCTTCTGTTAGAGGTCATGTT 59.159 41.667 0.00 0.00 31.70 2.71
4250 5280 1.067142 CAAGTCCAGTGCTACCGCTAA 60.067 52.381 0.00 0.00 36.97 3.09
4279 5309 1.323271 ACGACATGGCTGACGAGGAT 61.323 55.000 13.23 0.00 41.98 3.24
4397 5436 5.321927 GAGAAGGGTGATAAGGTTTTTGGA 58.678 41.667 0.00 0.00 0.00 3.53
4553 5594 0.107654 TCCTCAGAGAGACGCATCGA 60.108 55.000 0.00 0.00 0.00 3.59
4554 5595 0.307453 CTCCTCAGAGAGACGCATCG 59.693 60.000 0.00 0.00 43.39 3.84
4638 5681 3.320673 ACCTGTTCATTTCGTCTCTCC 57.679 47.619 0.00 0.00 0.00 3.71
4640 5683 5.209818 TGTTACCTGTTCATTTCGTCTCT 57.790 39.130 0.00 0.00 0.00 3.10
4658 5701 0.037590 ATTGCACCCTTCGGCTGTTA 59.962 50.000 0.00 0.00 0.00 2.41
4660 5703 1.973281 CATTGCACCCTTCGGCTGT 60.973 57.895 0.00 0.00 0.00 4.40
4676 5720 9.587772 GCTATAGTGGATATTGAATACGAACAT 57.412 33.333 0.84 0.00 0.00 2.71
4699 5743 5.196341 TCGAGAGTTGAGAAGTTTTGCTA 57.804 39.130 0.00 0.00 0.00 3.49
4708 5753 2.865079 AGGTCACTCGAGAGTTGAGAA 58.135 47.619 21.68 0.00 40.20 2.87
4710 5755 3.570559 GAAAGGTCACTCGAGAGTTGAG 58.429 50.000 21.68 1.60 40.20 3.02
4718 5764 2.684881 GGGTATACGAAAGGTCACTCGA 59.315 50.000 0.00 0.00 38.43 4.04
4769 5820 3.059386 GCGGGTTGCGGGAATGAA 61.059 61.111 0.00 0.00 0.00 2.57
4825 5896 3.381983 ATCCACACGCGCTCCTCA 61.382 61.111 5.73 0.00 0.00 3.86
4836 5907 2.303022 GAGAACAAGAGGGACATCCACA 59.697 50.000 0.00 0.00 38.24 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.