Multiple sequence alignment - TraesCS3B01G437700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G437700 chr3B 100.000 6088 0 0 1 6088 676631181 676625094 0.000000e+00 11243.0
1 TraesCS3B01G437700 chr3B 90.688 247 21 2 2695 2939 676628245 676627999 1.640000e-85 327.0
2 TraesCS3B01G437700 chr3B 90.688 247 21 2 2937 3183 676628487 676628243 1.640000e-85 327.0
3 TraesCS3B01G437700 chr3B 90.226 133 11 2 29 160 676631283 676631152 8.110000e-39 172.0
4 TraesCS3B01G437700 chr3B 93.258 89 6 0 4331 4419 676626641 676626553 1.380000e-26 132.0
5 TraesCS3B01G437700 chr3B 93.258 89 6 0 4541 4629 676626851 676626763 1.380000e-26 132.0
6 TraesCS3B01G437700 chr3B 100.000 30 0 0 1 30 676631051 676631022 8.520000e-04 56.5
7 TraesCS3B01G437700 chr3A 92.576 2209 86 28 3929 6088 649033705 649031526 0.000000e+00 3099.0
8 TraesCS3B01G437700 chr3A 92.083 2160 112 25 1819 3927 649036151 649034000 0.000000e+00 2987.0
9 TraesCS3B01G437700 chr3A 93.871 1648 73 17 161 1799 649037874 649036246 0.000000e+00 2459.0
10 TraesCS3B01G437700 chr3A 86.510 467 29 7 5640 6088 649030099 649029649 3.300000e-132 483.0
11 TraesCS3B01G437700 chr3A 91.586 309 21 4 3 308 649038884 649038578 7.300000e-114 422.0
12 TraesCS3B01G437700 chr3A 85.366 369 22 7 5719 6074 649031372 649031023 2.700000e-93 353.0
13 TraesCS3B01G437700 chr3A 91.870 246 19 1 2695 2939 649035002 649034757 5.840000e-90 342.0
14 TraesCS3B01G437700 chr3A 90.361 249 19 5 2937 3183 649035245 649035000 7.610000e-84 322.0
15 TraesCS3B01G437700 chr3A 91.892 148 10 2 161 306 649037991 649037844 8.000000e-49 206.0
16 TraesCS3B01G437700 chr3A 88.889 153 12 4 161 308 649038610 649038458 3.750000e-42 183.0
17 TraesCS3B01G437700 chr3A 88.406 138 11 4 165 297 649038548 649038411 1.760000e-35 161.0
18 TraesCS3B01G437700 chr3A 98.462 65 1 0 242 306 649038025 649037961 1.390000e-21 115.0
19 TraesCS3B01G437700 chr3A 91.892 74 5 1 171 243 649038480 649038407 1.080000e-17 102.0
20 TraesCS3B01G437700 chr3A 97.778 45 1 0 6002 6046 649031882 649031838 1.820000e-10 78.7
21 TraesCS3B01G437700 chr3D 92.699 2123 109 17 1819 3896 514275384 514273263 0.000000e+00 3020.0
22 TraesCS3B01G437700 chr3D 96.280 1640 40 12 165 1800 514277108 514275486 0.000000e+00 2671.0
23 TraesCS3B01G437700 chr3D 92.974 1651 72 25 4446 6088 514273212 514271598 0.000000e+00 2366.0
24 TraesCS3B01G437700 chr3D 92.276 246 18 1 2695 2939 514274243 514273998 1.260000e-91 348.0
25 TraesCS3B01G437700 chr3D 86.875 320 25 8 1 306 514277397 514277081 5.840000e-90 342.0
26 TraesCS3B01G437700 chr3D 88.710 248 25 3 2937 3183 514274486 514274241 3.570000e-77 300.0
27 TraesCS3B01G437700 chr3D 90.722 97 7 2 4324 4419 514273127 514273032 1.780000e-25 128.0
28 TraesCS3B01G437700 chr1A 88.722 133 15 0 3403 3535 457958201 457958069 4.880000e-36 163.0
29 TraesCS3B01G437700 chr1D 85.000 160 23 1 3376 3535 356870014 356869856 1.760000e-35 161.0
30 TraesCS3B01G437700 chr6A 80.899 89 14 2 5799 5887 14399980 14400065 3.940000e-07 67.6
31 TraesCS3B01G437700 chr4B 83.099 71 5 4 5807 5875 143322163 143322098 2.370000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G437700 chr3B 676625094 676631181 6087 True 11243.000000 11243 100.000000 1 6088 1 chr3B.!!$R1 6087
1 TraesCS3B01G437700 chr3A 649029649 649038884 9235 True 808.050000 3099 91.538714 3 6088 14 chr3A.!!$R1 6085
2 TraesCS3B01G437700 chr3D 514271598 514277397 5799 True 1310.714286 3020 91.505143 1 6088 7 chr3D.!!$R1 6087

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
818 1673 0.394899 CTCCTGGTCCTTGCCAATCC 60.395 60.000 0.00 0.0 38.18 3.01 F
1143 1998 0.396278 GGGGCTCCTGCTTTGCTATT 60.396 55.000 0.00 0.0 39.59 1.73 F
2276 3246 1.068948 TTTAGTGCAGGGCAAGGGTA 58.931 50.000 0.00 0.0 41.47 3.69 F
3903 4899 0.898320 TAGCTCAGTGGCTGGAGTTC 59.102 55.000 14.24 0.0 43.01 3.01 F
3906 4902 2.031012 CAGTGGCTGGAGTTCGCA 59.969 61.111 0.00 0.0 0.00 5.10 F
4893 6207 0.036388 TCGCTCCCATTTGTCTCCAC 60.036 55.000 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1971 2919 0.879090 CTGGTTTAACTTGCCCGACC 59.121 55.000 0.00 0.0 0.00 4.79 R
2429 3399 1.615116 GGGTGGCCAGGTAACCTTAAC 60.615 57.143 5.11 0.0 34.24 2.01 R
4062 5351 1.279025 ATAAGCCACCACCCACCGAT 61.279 55.000 0.00 0.0 0.00 4.18 R
4887 6201 0.179111 GGCATGTCGAATCGTGGAGA 60.179 55.000 1.52 0.0 0.00 3.71 R
4991 6307 0.473694 TTTCCTCCCTCAGAGTGCCA 60.474 55.000 0.00 0.0 41.47 4.92 R
5964 9180 2.600790 TCCTGTCCTACGAACCAAAGA 58.399 47.619 0.00 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 46 3.264104 CAGGGTATACGCTTCCGAAAAA 58.736 45.455 19.06 0.00 37.00 1.94
56 58 4.403453 CTTCCGAAAAAGGTTTATGCTCG 58.597 43.478 0.00 0.00 0.00 5.03
86 88 7.171678 TCGTGTACATTGATTACAAATGACACA 59.828 33.333 19.60 13.27 39.54 3.72
99 101 6.804677 ACAAATGACACAAGCAATTAGTGAA 58.195 32.000 0.00 0.00 37.05 3.18
391 1246 2.031870 GGGGAGGGCATGTACATTTTC 58.968 52.381 5.37 1.73 0.00 2.29
762 1617 4.587262 TGCGCATCTATTACCTTCCTCTTA 59.413 41.667 5.66 0.00 0.00 2.10
818 1673 0.394899 CTCCTGGTCCTTGCCAATCC 60.395 60.000 0.00 0.00 38.18 3.01
838 1693 4.290942 TCCCTCCTCACTTCTAGATTTCC 58.709 47.826 0.00 0.00 0.00 3.13
840 1695 3.068873 CCTCCTCACTTCTAGATTTCCGG 59.931 52.174 0.00 0.00 0.00 5.14
841 1696 3.031736 TCCTCACTTCTAGATTTCCGGG 58.968 50.000 0.00 0.00 0.00 5.73
842 1697 2.483889 CCTCACTTCTAGATTTCCGGGC 60.484 54.545 0.00 0.00 0.00 6.13
843 1698 1.485066 TCACTTCTAGATTTCCGGGCC 59.515 52.381 0.00 0.00 0.00 5.80
844 1699 1.486726 CACTTCTAGATTTCCGGGCCT 59.513 52.381 0.84 0.00 0.00 5.19
845 1700 1.763545 ACTTCTAGATTTCCGGGCCTC 59.236 52.381 0.84 0.00 0.00 4.70
846 1701 1.762957 CTTCTAGATTTCCGGGCCTCA 59.237 52.381 0.84 0.00 0.00 3.86
991 1846 1.627550 GAGTCTGTTCCTTTCGCCGC 61.628 60.000 0.00 0.00 0.00 6.53
1113 1968 1.064017 AGGTACTCTGCCTCCTCTGAG 60.064 57.143 0.00 0.00 37.83 3.35
1143 1998 0.396278 GGGGCTCCTGCTTTGCTATT 60.396 55.000 0.00 0.00 39.59 1.73
1183 2038 4.493872 CCGGTCGAGTTTTTGTTTTTCGTA 60.494 41.667 0.00 0.00 33.35 3.43
1195 2051 7.401484 TTTGTTTTTCGTATTTTGATCCAGC 57.599 32.000 0.00 0.00 0.00 4.85
1199 2055 2.639065 TCGTATTTTGATCCAGCCACC 58.361 47.619 0.00 0.00 0.00 4.61
1317 2173 5.071519 AGTGATCTGTGGAGATAGGGATTTG 59.928 44.000 0.00 0.00 39.19 2.32
1375 2233 5.699839 AGCCTGTTGATGTAAAAATTCGTC 58.300 37.500 0.00 0.00 0.00 4.20
1437 2295 7.039504 ACAATTTTACATCTTGCTGGATCTTGT 60.040 33.333 0.00 0.00 0.00 3.16
1528 2386 8.404000 AGATGCTTCAAATCATGATTGTACTTC 58.596 33.333 21.39 14.92 38.03 3.01
1543 2401 8.638873 TGATTGTACTTCCTGTCATATCGTATT 58.361 33.333 0.00 0.00 0.00 1.89
1705 2563 5.602561 AGGCTCTTGAACCAAGGTTTATTTT 59.397 36.000 5.87 0.00 41.33 1.82
1714 2572 8.536175 TGAACCAAGGTTTATTTTTCTTTCAGT 58.464 29.630 5.87 0.00 38.60 3.41
1717 2575 7.979537 ACCAAGGTTTATTTTTCTTTCAGTCAC 59.020 33.333 0.00 0.00 0.00 3.67
1753 2611 7.987458 TCTTCCTGTTTATATGGTCTTTAGCAG 59.013 37.037 0.00 0.00 36.36 4.24
1787 2645 3.631227 TGTGTTGTTCATGATGCAGTCAA 59.369 39.130 0.00 0.00 40.97 3.18
1800 2658 4.011966 TGCAGTCAATCATTCACTCACT 57.988 40.909 0.00 0.00 0.00 3.41
1801 2659 5.151297 TGCAGTCAATCATTCACTCACTA 57.849 39.130 0.00 0.00 0.00 2.74
1802 2660 5.737860 TGCAGTCAATCATTCACTCACTAT 58.262 37.500 0.00 0.00 0.00 2.12
1803 2661 5.814188 TGCAGTCAATCATTCACTCACTATC 59.186 40.000 0.00 0.00 0.00 2.08
1805 2663 6.238049 GCAGTCAATCATTCACTCACTATCAC 60.238 42.308 0.00 0.00 0.00 3.06
1806 2664 7.040494 CAGTCAATCATTCACTCACTATCACT 58.960 38.462 0.00 0.00 0.00 3.41
1807 2665 7.222417 CAGTCAATCATTCACTCACTATCACTC 59.778 40.741 0.00 0.00 0.00 3.51
1808 2666 7.038048 GTCAATCATTCACTCACTATCACTCA 58.962 38.462 0.00 0.00 0.00 3.41
1816 2758 7.446001 TCACTCACTATCACTCATAGCTATG 57.554 40.000 25.13 25.13 38.54 2.23
1817 2759 6.072230 TCACTCACTATCACTCATAGCTATGC 60.072 42.308 26.05 0.00 38.54 3.14
1824 2766 8.519526 ACTATCACTCATAGCTATGCTTAGTTC 58.480 37.037 26.05 0.00 40.44 3.01
1834 2776 7.693969 AGCTATGCTTAGTTCAATCTGTTTT 57.306 32.000 8.30 0.00 33.89 2.43
1840 2782 6.206634 TGCTTAGTTCAATCTGTTTTACCCTG 59.793 38.462 0.00 0.00 0.00 4.45
1842 2784 7.040686 GCTTAGTTCAATCTGTTTTACCCTGAA 60.041 37.037 0.00 0.00 0.00 3.02
1858 2800 5.036916 ACCCTGAATCTGTTAGGTTATGGA 58.963 41.667 0.00 0.00 0.00 3.41
1871 2813 8.262227 TGTTAGGTTATGGACTGTTAGTAATGG 58.738 37.037 0.00 0.00 0.00 3.16
1882 2824 8.610035 GGACTGTTAGTAATGGTTATAACTTGC 58.390 37.037 15.05 6.58 0.00 4.01
1952 2894 7.093945 GCTCTTCCTGTCCAAAAATATTGGTAA 60.094 37.037 7.07 0.00 40.40 2.85
1953 2895 8.893563 TCTTCCTGTCCAAAAATATTGGTAAT 57.106 30.769 7.07 0.00 40.40 1.89
1995 2943 2.678336 CGGGCAAGTTAAACCAGATCTC 59.322 50.000 0.00 0.00 0.00 2.75
1997 2945 3.017442 GGCAAGTTAAACCAGATCTCCC 58.983 50.000 0.00 0.00 0.00 4.30
1998 2946 3.561313 GGCAAGTTAAACCAGATCTCCCA 60.561 47.826 0.00 0.00 0.00 4.37
2058 3007 2.552743 GGTAACTTGTCCAGTTCTTGGC 59.447 50.000 0.00 0.00 42.62 4.52
2061 3010 2.424812 AACTTGTCCAGTTCTTGGCCAT 60.425 45.455 6.09 0.00 42.62 4.40
2075 3024 4.774726 TCTTGGCCATAAATAACTTTGCCA 59.225 37.500 6.09 0.00 38.48 4.92
2077 3026 5.275067 TGGCCATAAATAACTTTGCCATC 57.725 39.130 0.00 0.00 36.53 3.51
2078 3027 4.100808 TGGCCATAAATAACTTTGCCATCC 59.899 41.667 0.00 0.00 36.53 3.51
2079 3028 4.503123 GGCCATAAATAACTTTGCCATCCC 60.503 45.833 0.00 0.00 33.36 3.85
2082 3031 6.048509 CCATAAATAACTTTGCCATCCCAAC 58.951 40.000 0.00 0.00 0.00 3.77
2088 3037 2.242043 CTTTGCCATCCCAACTCTGTT 58.758 47.619 0.00 0.00 0.00 3.16
2121 3070 5.291971 GCTTCACACTTTGGAATTTGATGT 58.708 37.500 0.00 0.00 0.00 3.06
2165 3114 9.592196 AATATCTATTAAGAATGGTTGCCATGT 57.408 29.630 0.96 0.00 44.40 3.21
2205 3157 4.626042 ACTGTGAAAGTCTCTACTTGCTG 58.374 43.478 0.00 0.00 45.37 4.41
2206 3158 3.393800 TGTGAAAGTCTCTACTTGCTGC 58.606 45.455 0.00 0.00 45.37 5.25
2207 3159 2.410053 GTGAAAGTCTCTACTTGCTGCG 59.590 50.000 0.00 0.00 45.37 5.18
2208 3160 2.296190 TGAAAGTCTCTACTTGCTGCGA 59.704 45.455 0.00 0.00 45.37 5.10
2209 3161 3.056536 TGAAAGTCTCTACTTGCTGCGAT 60.057 43.478 0.00 0.00 45.37 4.58
2210 3162 4.157840 TGAAAGTCTCTACTTGCTGCGATA 59.842 41.667 0.00 0.00 45.37 2.92
2211 3163 4.720649 AAGTCTCTACTTGCTGCGATAA 57.279 40.909 0.00 0.00 44.40 1.75
2221 3186 4.339247 ACTTGCTGCGATAATAAGGCATTT 59.661 37.500 0.00 0.00 35.91 2.32
2224 3189 4.222114 GCTGCGATAATAAGGCATTTGAC 58.778 43.478 0.00 0.00 35.91 3.18
2228 3193 5.699001 TGCGATAATAAGGCATTTGACGTAT 59.301 36.000 0.00 0.00 28.80 3.06
2244 3209 9.654417 ATTTGACGTATTTGTAAATATAACGCC 57.346 29.630 9.70 2.37 33.49 5.68
2268 3238 1.329913 GCCCCCAATTTAGTGCAGGG 61.330 60.000 0.00 0.00 39.29 4.45
2272 3242 1.205417 CCCAATTTAGTGCAGGGCAAG 59.795 52.381 0.00 0.00 41.47 4.01
2274 3244 1.205417 CAATTTAGTGCAGGGCAAGGG 59.795 52.381 0.00 0.00 41.47 3.95
2276 3246 1.068948 TTTAGTGCAGGGCAAGGGTA 58.931 50.000 0.00 0.00 41.47 3.69
2429 3399 0.947244 GAATTGAGCATGGTAGCCCG 59.053 55.000 0.00 0.00 34.23 6.13
2584 3554 5.411493 TCATTTATAGGATGGCTACCCTGA 58.589 41.667 0.00 0.00 34.11 3.86
2718 3691 6.795144 ATCATTGAAAATGCAGTCCCATTA 57.205 33.333 0.00 0.00 34.50 1.90
2726 3699 3.576078 TGCAGTCCCATTATTACCTGG 57.424 47.619 0.00 0.00 0.00 4.45
2746 3719 5.278169 CCTGGCTTATGTTAATGACAGATGC 60.278 44.000 2.80 2.80 44.99 3.91
2751 3724 7.966753 GGCTTATGTTAATGACAGATGCATATG 59.033 37.037 19.49 19.49 46.53 1.78
2793 3767 5.499139 TCTGTTCCTTGCAACTAACAAAG 57.501 39.130 17.85 10.62 31.90 2.77
2796 3770 4.097286 TGTTCCTTGCAACTAACAAAGGAC 59.903 41.667 15.90 6.11 29.73 3.85
2819 3793 9.104965 GGACCCCTTTGTTATTTATAATTTTGC 57.895 33.333 0.00 0.00 0.00 3.68
2820 3794 9.104965 GACCCCTTTGTTATTTATAATTTTGCC 57.895 33.333 0.00 0.00 0.00 4.52
2848 3822 8.598916 TGTAGTTACTTGATCCAGATTTAACCA 58.401 33.333 0.00 0.00 0.00 3.67
2953 3927 7.493320 TGGAGAAAATATCATTGAAAATGCAGC 59.507 33.333 0.00 0.00 0.00 5.25
2958 3932 1.275856 TCATTGAAAATGCAGCCCCAC 59.724 47.619 0.00 0.00 0.00 4.61
2964 3938 2.179377 AAATGCAGCCCCACCATTAT 57.821 45.000 0.00 0.00 0.00 1.28
2972 3946 2.092212 AGCCCCACCATTATCTGACTTG 60.092 50.000 0.00 0.00 0.00 3.16
2975 3949 2.684881 CCCACCATTATCTGACTTGTGC 59.315 50.000 0.00 0.00 0.00 4.57
2978 3952 4.813161 CCACCATTATCTGACTTGTGCTAG 59.187 45.833 0.00 0.00 0.00 3.42
3040 4014 6.096141 TGTTCCTTGCAACTAACAAAGAATCA 59.904 34.615 15.90 0.00 31.95 2.57
3320 4294 5.711506 TGTGGACAAGTATCCTAACGTAAGA 59.288 40.000 0.00 0.00 39.75 2.10
3337 4311 6.412214 ACGTAAGAATGCATTACTTTAGGGT 58.588 36.000 21.28 14.01 43.62 4.34
3400 4374 9.132521 GAATGATTTACACTCTTTTGTCCATTG 57.867 33.333 0.00 0.00 0.00 2.82
3528 4502 7.169982 CAGTTAAAGACTCTGTGAAGGTAACTG 59.830 40.741 0.00 0.00 41.89 3.16
3629 4603 9.515226 ACCATGTGTTACTGTCATAGTTAATTT 57.485 29.630 0.00 0.00 40.89 1.82
3710 4699 3.517612 ACTGAACCTTTAGTCTGGCCTA 58.482 45.455 3.32 0.00 0.00 3.93
3716 4705 4.844884 ACCTTTAGTCTGGCCTAATTGAC 58.155 43.478 3.32 4.87 0.00 3.18
3762 4751 3.965694 AGGACTAGTAACACTGTCGGAT 58.034 45.455 0.00 0.00 31.54 4.18
3763 4752 4.342359 AGGACTAGTAACACTGTCGGATT 58.658 43.478 0.00 0.00 31.54 3.01
3811 4806 1.731433 TATCACGTAGCCCGCACCTC 61.731 60.000 0.00 0.00 41.42 3.85
3903 4899 0.898320 TAGCTCAGTGGCTGGAGTTC 59.102 55.000 14.24 0.00 43.01 3.01
3906 4902 2.031012 CAGTGGCTGGAGTTCGCA 59.969 61.111 0.00 0.00 0.00 5.10
3907 4903 2.031516 CAGTGGCTGGAGTTCGCAG 61.032 63.158 0.00 0.00 0.00 5.18
3908 4904 2.031163 GTGGCTGGAGTTCGCAGT 59.969 61.111 0.00 0.00 0.00 4.40
3909 4905 2.031012 TGGCTGGAGTTCGCAGTG 59.969 61.111 0.00 0.00 0.00 3.66
3948 5237 5.113502 GCACTTGCTCATTCTAGTTGTTT 57.886 39.130 0.00 0.00 38.21 2.83
3992 5281 5.830000 AATGACATTGTGAGATGACATGG 57.170 39.130 0.00 0.00 40.02 3.66
4002 5291 4.563184 GTGAGATGACATGGTCTACGTTTC 59.437 45.833 0.00 0.00 33.15 2.78
4062 5351 8.682710 AGTGACTGCTGTAAAAACATTCTTTTA 58.317 29.630 0.00 0.00 31.15 1.52
4131 5420 5.200483 CCCTTAGCCTTCATTGTTTGGATA 58.800 41.667 0.00 0.00 0.00 2.59
4136 5425 6.212888 AGCCTTCATTGTTTGGATATTGTC 57.787 37.500 0.00 0.00 0.00 3.18
4137 5426 5.954150 AGCCTTCATTGTTTGGATATTGTCT 59.046 36.000 0.00 0.00 0.00 3.41
4138 5427 6.038356 GCCTTCATTGTTTGGATATTGTCTG 58.962 40.000 0.00 0.00 0.00 3.51
4139 5428 6.567050 CCTTCATTGTTTGGATATTGTCTGG 58.433 40.000 0.00 0.00 0.00 3.86
4140 5429 6.377996 CCTTCATTGTTTGGATATTGTCTGGA 59.622 38.462 0.00 0.00 0.00 3.86
4141 5430 7.069085 CCTTCATTGTTTGGATATTGTCTGGAT 59.931 37.037 0.00 0.00 0.00 3.41
4163 5458 7.679881 TGGATCCTGGTGATATATGTACATTCT 59.320 37.037 14.77 4.81 32.41 2.40
4219 5514 7.835682 ACCCTGTAACTTAACTGTTTAAGGTTT 59.164 33.333 0.00 0.00 41.68 3.27
4278 5573 9.962759 GATGCACTTATAAGCTTTTCAAATTTG 57.037 29.630 12.15 12.15 0.00 2.32
4358 5671 6.067217 AGTTATAGGCTTTGACATTGGACT 57.933 37.500 0.00 0.00 0.00 3.85
4470 5783 8.948631 TGTAGGCTTTTCAAATCTGATAGTAG 57.051 34.615 0.00 0.00 0.00 2.57
4471 5784 6.934048 AGGCTTTTCAAATCTGATAGTAGC 57.066 37.500 0.00 0.00 0.00 3.58
4472 5785 6.418101 AGGCTTTTCAAATCTGATAGTAGCA 58.582 36.000 0.00 0.00 0.00 3.49
4533 5846 5.222151 TGGTGTTACCCTTGGACATGAAATA 60.222 40.000 0.00 0.00 37.50 1.40
4571 5884 7.451566 AGTTATAGACTTTGACATTGGGCTTTT 59.548 33.333 0.00 0.00 33.92 2.27
4656 5970 5.845391 TTTCTTCATTTCTGTTTTCCCGT 57.155 34.783 0.00 0.00 0.00 5.28
4815 6129 6.550843 CATTATTGATGTGCGTCTAAACCAA 58.449 36.000 0.00 0.00 0.00 3.67
4857 6171 7.020827 AGATCTTCTCAAACCAATGGTAAGA 57.979 36.000 14.70 14.70 33.12 2.10
4886 6200 1.533625 TCCTGTTTCGCTCCCATTTG 58.466 50.000 0.00 0.00 0.00 2.32
4887 6201 1.202879 TCCTGTTTCGCTCCCATTTGT 60.203 47.619 0.00 0.00 0.00 2.83
4888 6202 1.200020 CCTGTTTCGCTCCCATTTGTC 59.800 52.381 0.00 0.00 0.00 3.18
4889 6203 2.154462 CTGTTTCGCTCCCATTTGTCT 58.846 47.619 0.00 0.00 0.00 3.41
4890 6204 2.151202 TGTTTCGCTCCCATTTGTCTC 58.849 47.619 0.00 0.00 0.00 3.36
4892 6206 0.690192 TTCGCTCCCATTTGTCTCCA 59.310 50.000 0.00 0.00 0.00 3.86
4893 6207 0.036388 TCGCTCCCATTTGTCTCCAC 60.036 55.000 0.00 0.00 0.00 4.02
4894 6208 1.361668 CGCTCCCATTTGTCTCCACG 61.362 60.000 0.00 0.00 0.00 4.94
4895 6209 0.036388 GCTCCCATTTGTCTCCACGA 60.036 55.000 0.00 0.00 0.00 4.35
4991 6307 0.473326 GAGAGCTGGCCATCCTGAAT 59.527 55.000 5.51 0.00 33.56 2.57
5096 6412 1.014352 CGGGGCGGTGATCTAAAAAG 58.986 55.000 0.00 0.00 0.00 2.27
5148 6464 3.194116 GTGGAGATGATTGGTGTTGCATT 59.806 43.478 0.00 0.00 0.00 3.56
5192 6508 0.179702 ATGCCTGTCATGATCTGCGT 59.820 50.000 0.00 0.25 33.26 5.24
5686 7010 6.262944 GTGATGCATATGGGAATACTGACAAA 59.737 38.462 0.00 0.00 0.00 2.83
5709 7034 8.404000 CAAACATGATAGGAAGAATTTCTCCTG 58.596 37.037 19.41 10.79 34.06 3.86
5758 7083 7.876582 ACTTGTCTAACTTTGTAGGTTACCATC 59.123 37.037 3.51 0.00 0.00 3.51
5915 9131 9.503399 AGGATTACCTTACACTAAAGTTTTCAG 57.497 33.333 0.00 0.00 45.36 3.02
5916 9132 9.281371 GGATTACCTTACACTAAAGTTTTCAGT 57.719 33.333 0.00 0.00 0.00 3.41
5964 9180 2.445525 TCCACTCCAACCTTTTAGCCTT 59.554 45.455 0.00 0.00 0.00 4.35
5974 9190 3.568430 ACCTTTTAGCCTTCTTTGGTTCG 59.432 43.478 0.00 0.00 0.00 3.95
5994 9210 6.489361 GGTTCGTAGGACAGGAATATCTTAGA 59.511 42.308 0.00 0.00 33.82 2.10
6060 9277 5.014858 TCCAAGTAGTTATCCGTTGAGAGT 58.985 41.667 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 46 2.029290 ACACGAGTTCGAGCATAAACCT 60.029 45.455 8.72 0.00 43.02 3.50
56 58 8.440059 TCATTTGTAATCAATGTACACGAGTTC 58.560 33.333 0.00 0.00 31.27 3.01
169 171 2.087501 TGAAGATGGCGCGAACTTTA 57.912 45.000 15.58 9.37 0.00 1.85
243 981 9.948964 CCATGAGTTGTTATGGATAGATGAATA 57.051 33.333 0.00 0.00 45.32 1.75
370 1224 0.261696 AAATGTACATGCCCTCCCCC 59.738 55.000 9.63 0.00 0.00 5.40
391 1246 4.777366 ACCCAAGATAAATGGTTTGAAGGG 59.223 41.667 0.00 0.00 36.14 3.95
762 1617 6.006449 GGATAGATGGGATTGTTTAGCACAT 58.994 40.000 0.00 0.00 34.43 3.21
793 1648 1.777272 GGCAAGGACCAGGAGGATATT 59.223 52.381 0.00 0.00 38.69 1.28
818 1673 3.068873 CCGGAAATCTAGAAGTGAGGAGG 59.931 52.174 0.00 0.00 0.00 4.30
841 1696 2.194326 GAGGGGCAATCCTGAGGC 59.806 66.667 0.00 0.00 37.25 4.70
842 1697 2.761465 GGGAGGGGCAATCCTGAGG 61.761 68.421 7.11 0.00 37.25 3.86
843 1698 0.400525 TAGGGAGGGGCAATCCTGAG 60.401 60.000 7.11 0.00 37.25 3.35
844 1699 0.694444 GTAGGGAGGGGCAATCCTGA 60.694 60.000 7.11 0.00 37.25 3.86
845 1700 1.709994 GGTAGGGAGGGGCAATCCTG 61.710 65.000 7.11 0.00 37.25 3.86
846 1701 1.386057 GGTAGGGAGGGGCAATCCT 60.386 63.158 7.11 0.00 40.43 3.24
991 1846 2.106332 GTCGTCCATGGCTACCGG 59.894 66.667 6.96 0.00 0.00 5.28
1107 1962 1.830477 CCCCACCTTTCTCTCTCAGAG 59.170 57.143 0.00 0.00 43.64 3.35
1113 1968 0.912006 AGGAGCCCCACCTTTCTCTC 60.912 60.000 0.00 0.00 33.55 3.20
1143 1998 2.171870 ACCGGAAGAAACAAGAACAGGA 59.828 45.455 9.46 0.00 0.00 3.86
1183 2038 1.683011 CCGAGGTGGCTGGATCAAAAT 60.683 52.381 0.00 0.00 0.00 1.82
1214 2070 1.530441 CCGCATCAAATCTCGTGCTTG 60.530 52.381 0.00 0.00 35.52 4.01
1317 2173 2.315925 TCAACGAGGAGCAATCATCC 57.684 50.000 0.00 0.00 37.07 3.51
1352 2209 5.473504 AGACGAATTTTTACATCAACAGGCT 59.526 36.000 0.00 0.00 0.00 4.58
1386 2244 6.403049 ACACACGTCTATCAATAAATGACCA 58.597 36.000 0.00 0.00 41.93 4.02
1528 2386 9.513727 CATGAGAGATTAATACGATATGACAGG 57.486 37.037 0.00 0.00 0.00 4.00
1543 2401 6.997655 ACTCTGTTGTTCACATGAGAGATTA 58.002 36.000 16.99 0.00 36.16 1.75
1717 2575 9.265901 CCATATAAACAGGAAGAATCACAGTAG 57.734 37.037 0.00 0.00 0.00 2.57
1722 2580 8.738645 AAGACCATATAAACAGGAAGAATCAC 57.261 34.615 0.00 0.00 0.00 3.06
1749 2607 6.531503 ACAACACATAGTATCTACACTGCT 57.468 37.500 0.00 0.00 0.00 4.24
1753 2611 8.926715 TCATGAACAACACATAGTATCTACAC 57.073 34.615 0.00 0.00 0.00 2.90
1787 2645 7.233144 AGCTATGAGTGATAGTGAGTGAATGAT 59.767 37.037 0.00 0.00 37.04 2.45
1800 2658 8.409358 TGAACTAAGCATAGCTATGAGTGATA 57.591 34.615 33.10 17.06 38.25 2.15
1801 2659 7.295322 TGAACTAAGCATAGCTATGAGTGAT 57.705 36.000 33.10 15.51 38.25 3.06
1802 2660 6.715347 TGAACTAAGCATAGCTATGAGTGA 57.285 37.500 33.10 16.34 38.25 3.41
1803 2661 7.871973 AGATTGAACTAAGCATAGCTATGAGTG 59.128 37.037 33.10 21.10 38.25 3.51
1805 2663 7.871973 ACAGATTGAACTAAGCATAGCTATGAG 59.128 37.037 33.10 23.74 38.25 2.90
1806 2664 7.730084 ACAGATTGAACTAAGCATAGCTATGA 58.270 34.615 33.10 14.51 38.25 2.15
1807 2665 7.959689 ACAGATTGAACTAAGCATAGCTATG 57.040 36.000 26.42 26.42 38.25 2.23
1808 2666 8.970859 AAACAGATTGAACTAAGCATAGCTAT 57.029 30.769 0.00 0.00 38.25 2.97
1816 2758 6.430000 TCAGGGTAAAACAGATTGAACTAAGC 59.570 38.462 0.00 0.00 0.00 3.09
1817 2759 7.979444 TCAGGGTAAAACAGATTGAACTAAG 57.021 36.000 0.00 0.00 0.00 2.18
1824 2766 6.824305 ACAGATTCAGGGTAAAACAGATTG 57.176 37.500 0.00 0.00 0.00 2.67
1834 2776 6.099269 GTCCATAACCTAACAGATTCAGGGTA 59.901 42.308 0.00 0.00 33.48 3.69
1840 2782 8.258708 ACTAACAGTCCATAACCTAACAGATTC 58.741 37.037 0.00 0.00 0.00 2.52
1842 2784 7.735326 ACTAACAGTCCATAACCTAACAGAT 57.265 36.000 0.00 0.00 0.00 2.90
1876 2818 6.435277 AGGTCATCAAATTGTCATAGCAAGTT 59.565 34.615 0.00 0.00 37.16 2.66
1915 2857 3.986572 GACAGGAAGAGCATCATACATCG 59.013 47.826 0.00 0.00 37.82 3.84
1952 2894 6.872020 CCCGACCGACTAATAAATGATAACAT 59.128 38.462 0.00 0.00 38.50 2.71
1953 2895 6.218019 CCCGACCGACTAATAAATGATAACA 58.782 40.000 0.00 0.00 0.00 2.41
1962 2910 1.826720 ACTTGCCCGACCGACTAATAA 59.173 47.619 0.00 0.00 0.00 1.40
1965 2913 1.255882 TAACTTGCCCGACCGACTAA 58.744 50.000 0.00 0.00 0.00 2.24
1971 2919 0.879090 CTGGTTTAACTTGCCCGACC 59.121 55.000 0.00 0.00 0.00 4.79
1972 2920 1.886886 TCTGGTTTAACTTGCCCGAC 58.113 50.000 0.00 0.00 0.00 4.79
2024 2972 9.915629 CTGGACAAGTTACCAGTATATTAGATC 57.084 37.037 15.84 0.00 45.82 2.75
2058 3007 5.867903 TGGGATGGCAAAGTTATTTATGG 57.132 39.130 0.00 0.00 0.00 2.74
2061 3010 6.152661 CAGAGTTGGGATGGCAAAGTTATTTA 59.847 38.462 0.00 0.00 0.00 1.40
2075 3024 4.700213 CCAATTACGAAACAGAGTTGGGAT 59.300 41.667 0.00 0.00 32.92 3.85
2077 3026 3.365969 GCCAATTACGAAACAGAGTTGGG 60.366 47.826 0.00 0.00 36.14 4.12
2078 3027 3.502211 AGCCAATTACGAAACAGAGTTGG 59.498 43.478 0.00 0.00 38.08 3.77
2079 3028 4.749245 AGCCAATTACGAAACAGAGTTG 57.251 40.909 0.00 0.00 0.00 3.16
2082 3031 4.213270 TGTGAAGCCAATTACGAAACAGAG 59.787 41.667 0.00 0.00 0.00 3.35
2088 3037 4.261405 CCAAAGTGTGAAGCCAATTACGAA 60.261 41.667 0.00 0.00 0.00 3.85
2145 3094 6.364701 AGCTACATGGCAACCATTCTTAATA 58.635 36.000 0.00 0.00 42.23 0.98
2158 3107 6.439636 AGAATAGGAATAAGCTACATGGCA 57.560 37.500 0.00 0.00 34.17 4.92
2159 3108 8.097662 AGTAAGAATAGGAATAAGCTACATGGC 58.902 37.037 0.00 0.00 0.00 4.40
2161 3110 9.988815 ACAGTAAGAATAGGAATAAGCTACATG 57.011 33.333 0.00 0.00 0.00 3.21
2205 3157 4.468095 ACGTCAAATGCCTTATTATCGC 57.532 40.909 0.00 0.00 0.00 4.58
2206 3158 8.067784 ACAAATACGTCAAATGCCTTATTATCG 58.932 33.333 0.00 0.00 0.00 2.92
2221 3186 8.967218 GTAGGCGTTATATTTACAAATACGTCA 58.033 33.333 12.79 1.22 35.87 4.35
2224 3189 7.948363 GCAGTAGGCGTTATATTTACAAATACG 59.052 37.037 4.79 4.79 34.01 3.06
2228 3193 5.528320 GGGCAGTAGGCGTTATATTTACAAA 59.472 40.000 0.00 0.00 46.16 2.83
2243 3208 2.654863 CACTAAATTGGGGGCAGTAGG 58.345 52.381 0.00 0.00 0.00 3.18
2244 3209 2.024414 GCACTAAATTGGGGGCAGTAG 58.976 52.381 0.96 0.00 0.00 2.57
2268 3238 6.058183 ACAATGATGAGAGTAATACCCTTGC 58.942 40.000 0.00 0.00 0.00 4.01
2305 3275 4.402155 AGGCAGTGAGTGAAATGTTTTTCA 59.598 37.500 0.00 0.00 46.88 2.69
2306 3276 4.936891 AGGCAGTGAGTGAAATGTTTTTC 58.063 39.130 0.00 0.00 41.39 2.29
2312 3282 3.340928 TGATGAGGCAGTGAGTGAAATG 58.659 45.455 0.00 0.00 0.00 2.32
2381 3351 7.178274 TCAGCATCAACAAAATTATGGTTAGGT 59.822 33.333 0.00 0.00 0.00 3.08
2429 3399 1.615116 GGGTGGCCAGGTAACCTTAAC 60.615 57.143 5.11 0.00 34.24 2.01
2533 3503 9.793252 ATTACAACATAGCAATTCAATCTCAAC 57.207 29.630 0.00 0.00 0.00 3.18
2561 3531 5.411493 TCAGGGTAGCCATCCTATAAATGA 58.589 41.667 14.62 0.78 0.00 2.57
2641 3614 6.603997 TCCAGAAAACTAGTGCAAGGTTAAAA 59.396 34.615 0.00 0.00 0.00 1.52
2718 3691 7.573710 TCTGTCATTAACATAAGCCAGGTAAT 58.426 34.615 0.00 0.00 37.23 1.89
2726 3699 8.724229 TCATATGCATCTGTCATTAACATAAGC 58.276 33.333 0.19 0.00 37.23 3.09
2746 3719 9.894783 GATGAGTCAAAATGGAGAAATCATATG 57.105 33.333 0.00 0.00 0.00 1.78
2751 3724 7.388460 ACAGATGAGTCAAAATGGAGAAATC 57.612 36.000 0.00 0.00 0.00 2.17
2793 3767 9.104965 GCAAAATTATAAATAACAAAGGGGTCC 57.895 33.333 0.00 0.00 0.00 4.46
2796 3770 9.679661 AAGGCAAAATTATAAATAACAAAGGGG 57.320 29.630 0.00 0.00 0.00 4.79
2815 3789 5.626142 TGGATCAAGTAACTACAAGGCAAA 58.374 37.500 0.00 0.00 0.00 3.68
2819 3793 9.667107 TTAAATCTGGATCAAGTAACTACAAGG 57.333 33.333 0.00 0.00 0.00 3.61
2953 3927 3.282021 CACAAGTCAGATAATGGTGGGG 58.718 50.000 0.00 0.00 0.00 4.96
2958 3932 4.813161 CCACTAGCACAAGTCAGATAATGG 59.187 45.833 0.00 0.00 0.00 3.16
2964 3938 3.914984 GCCACTAGCACAAGTCAGA 57.085 52.632 0.00 0.00 42.97 3.27
2975 3949 8.725148 GGACAAATAATATTCATCTGCCACTAG 58.275 37.037 0.00 0.00 0.00 2.57
2978 3952 7.275888 TGGACAAATAATATTCATCTGCCAC 57.724 36.000 0.00 0.00 0.00 5.01
3320 4294 9.474313 TGATAGAAAACCCTAAAGTAATGCATT 57.526 29.630 17.56 17.56 0.00 3.56
3400 4374 2.604614 CGGCCAACAAAGTTGAACTAGC 60.605 50.000 11.19 5.66 0.00 3.42
3485 4459 1.431488 CTGATCCACGCCCACGAATG 61.431 60.000 0.00 0.00 43.93 2.67
3528 4502 6.201806 GGAGAACAATACATGATAGTGTGCTC 59.798 42.308 22.44 22.44 43.66 4.26
3628 4602 6.848069 TCAACCAGGGAAAAGAATCTCTTAA 58.152 36.000 0.00 0.00 35.27 1.85
3629 4603 6.448369 TCAACCAGGGAAAAGAATCTCTTA 57.552 37.500 0.00 0.00 35.27 2.10
3630 4604 5.324832 TCAACCAGGGAAAAGAATCTCTT 57.675 39.130 0.00 0.00 38.59 2.85
3631 4605 5.324832 TTCAACCAGGGAAAAGAATCTCT 57.675 39.130 0.00 0.00 0.00 3.10
3632 4606 6.393171 CAATTCAACCAGGGAAAAGAATCTC 58.607 40.000 0.00 0.00 0.00 2.75
3633 4607 5.246883 CCAATTCAACCAGGGAAAAGAATCT 59.753 40.000 0.00 0.00 0.00 2.40
3636 4610 3.070878 GCCAATTCAACCAGGGAAAAGAA 59.929 43.478 0.00 0.00 0.00 2.52
3638 4612 2.634453 AGCCAATTCAACCAGGGAAAAG 59.366 45.455 0.00 0.00 0.00 2.27
3733 4722 9.286946 CGACAGTGTTACTAGTCCTAAAATAAG 57.713 37.037 0.00 0.00 0.00 1.73
3785 4780 2.223665 GCGGGCTACGTGATAGTAAGTT 60.224 50.000 0.00 0.00 46.52 2.66
3927 4923 8.261492 AGATAAACAACTAGAATGAGCAAGTG 57.739 34.615 0.00 0.00 0.00 3.16
3948 5237 7.241251 TCATTAACCTAGAGGCCCTAGTAGATA 59.759 40.741 20.44 8.13 42.63 1.98
3959 5248 5.428253 TCACAATGTCATTAACCTAGAGGC 58.572 41.667 0.00 0.00 39.32 4.70
4002 5291 9.464714 ACTCACTGCAGTTAAACTATATATTCG 57.535 33.333 18.94 0.00 0.00 3.34
4062 5351 1.279025 ATAAGCCACCACCCACCGAT 61.279 55.000 0.00 0.00 0.00 4.18
4090 5379 3.521727 AGGGGAACAGAAAGCTAGAGAA 58.478 45.455 0.00 0.00 0.00 2.87
4091 5380 3.191888 AGGGGAACAGAAAGCTAGAGA 57.808 47.619 0.00 0.00 0.00 3.10
4131 5420 6.503217 ACATATATCACCAGGATCCAGACAAT 59.497 38.462 15.82 4.43 37.44 2.71
4136 5425 6.857437 TGTACATATATCACCAGGATCCAG 57.143 41.667 15.82 5.70 37.44 3.86
4137 5426 7.679881 AGAATGTACATATATCACCAGGATCCA 59.320 37.037 15.82 0.00 37.44 3.41
4138 5427 8.083828 AGAATGTACATATATCACCAGGATCC 57.916 38.462 9.21 2.48 37.44 3.36
4141 5430 9.997172 AGATAGAATGTACATATATCACCAGGA 57.003 33.333 26.92 4.63 0.00 3.86
4202 5497 9.612620 CTAGCATCAAAACCTTAAACAGTTAAG 57.387 33.333 0.00 0.19 44.01 1.85
4219 5514 8.183104 ACTTATATACAGCAGACTAGCATCAA 57.817 34.615 0.00 0.00 36.85 2.57
4337 5650 6.721318 AGAAGTCCAATGTCAAAGCCTATAA 58.279 36.000 0.00 0.00 0.00 0.98
4423 5736 7.880160 ACATTTGCATCTACAAAAGCCTATA 57.120 32.000 0.00 0.00 42.45 1.31
4424 5737 6.780457 ACATTTGCATCTACAAAAGCCTAT 57.220 33.333 0.00 0.00 42.45 2.57
4425 5738 6.318648 CCTACATTTGCATCTACAAAAGCCTA 59.681 38.462 0.00 0.00 42.45 3.93
4426 5739 5.126061 CCTACATTTGCATCTACAAAAGCCT 59.874 40.000 0.00 0.00 42.45 4.58
4434 5747 6.194796 TGAAAAGCCTACATTTGCATCTAC 57.805 37.500 0.00 0.00 0.00 2.59
4438 5751 6.592607 CAGATTTGAAAAGCCTACATTTGCAT 59.407 34.615 0.00 0.00 0.00 3.96
4505 5818 4.938575 TGTCCAAGGGTAACACCATAAT 57.061 40.909 0.00 0.00 41.02 1.28
4509 5822 2.058705 TCATGTCCAAGGGTAACACCA 58.941 47.619 0.00 0.00 41.02 4.17
4533 5846 7.122353 TCAAAGTCTATAACTAAAGAGCGAGGT 59.878 37.037 0.00 0.00 37.17 3.85
4636 5950 4.758165 GGTACGGGAAAACAGAAATGAAGA 59.242 41.667 0.00 0.00 0.00 2.87
4656 5970 4.055710 TCATTCATATCGCTAGGGGGTA 57.944 45.455 6.99 1.49 0.00 3.69
4857 6171 4.359706 GAGCGAAACAGGAAACAAATGTT 58.640 39.130 0.00 0.00 38.76 2.71
4886 6200 0.924090 GCATGTCGAATCGTGGAGAC 59.076 55.000 1.52 0.00 0.00 3.36
4887 6201 0.179111 GGCATGTCGAATCGTGGAGA 60.179 55.000 1.52 0.00 0.00 3.71
4888 6202 1.154205 GGGCATGTCGAATCGTGGAG 61.154 60.000 1.52 0.00 0.00 3.86
4889 6203 1.153449 GGGCATGTCGAATCGTGGA 60.153 57.895 1.52 0.00 0.00 4.02
4890 6204 0.744414 AAGGGCATGTCGAATCGTGG 60.744 55.000 1.52 0.00 0.00 4.94
4892 6206 1.066143 AGAAAGGGCATGTCGAATCGT 60.066 47.619 1.52 0.00 0.00 3.73
4893 6207 1.656652 AGAAAGGGCATGTCGAATCG 58.343 50.000 0.00 0.00 0.00 3.34
4894 6208 3.312697 GGTTAGAAAGGGCATGTCGAATC 59.687 47.826 0.00 0.00 0.00 2.52
4895 6209 3.279434 GGTTAGAAAGGGCATGTCGAAT 58.721 45.455 0.00 0.00 0.00 3.34
4991 6307 0.473694 TTTCCTCCCTCAGAGTGCCA 60.474 55.000 0.00 0.00 41.47 4.92
5015 6331 4.129148 GGGCTAAGGTGGGGGCTG 62.129 72.222 0.00 0.00 0.00 4.85
5096 6412 4.527509 TCAGATTCAGACAGACCAAGTC 57.472 45.455 0.00 0.00 36.26 3.01
5148 6464 1.451927 GCACTCATCATCCCGGCAA 60.452 57.895 0.00 0.00 0.00 4.52
5192 6508 2.355310 CCCATCTACGGTTGGTAAAGCA 60.355 50.000 0.00 0.00 33.21 3.91
5410 6728 6.294342 GCACCAGCACATGACAATATCATATT 60.294 38.462 0.00 0.00 42.88 1.28
5686 7010 6.060788 GCAGGAGAAATTCTTCCTATCATGT 58.939 40.000 11.70 0.00 31.28 3.21
5758 7083 6.260936 CAGGCTAAACTACTTGGATATTGTGG 59.739 42.308 0.00 0.00 0.00 4.17
5921 9137 8.364894 GTGGACACTAAAATTCCTATGGTTTTT 58.635 33.333 0.00 0.00 0.00 1.94
5922 9138 7.728532 AGTGGACACTAAAATTCCTATGGTTTT 59.271 33.333 2.58 0.00 40.43 2.43
5923 9139 7.238710 AGTGGACACTAAAATTCCTATGGTTT 58.761 34.615 2.58 0.00 40.43 3.27
5924 9140 6.790319 AGTGGACACTAAAATTCCTATGGTT 58.210 36.000 2.58 0.00 40.43 3.67
5925 9141 6.388619 AGTGGACACTAAAATTCCTATGGT 57.611 37.500 2.58 0.00 40.43 3.55
5926 9142 5.823045 GGAGTGGACACTAAAATTCCTATGG 59.177 44.000 4.73 0.00 42.66 2.74
5964 9180 2.600790 TCCTGTCCTACGAACCAAAGA 58.399 47.619 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.