Multiple sequence alignment - TraesCS3B01G437600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G437600 chr3B 100.000 3946 0 0 1 3946 676614605 676618550 0.000000e+00 7287.0
1 TraesCS3B01G437600 chr3A 90.138 2981 177 53 687 3614 649025437 649028353 0.000000e+00 3768.0
2 TraesCS3B01G437600 chr3A 94.118 340 15 4 1 338 649024648 649024984 2.720000e-141 512.0
3 TraesCS3B01G437600 chr3A 87.755 343 25 8 337 666 649025108 649025446 6.190000e-103 385.0
4 TraesCS3B01G437600 chr3D 86.438 1224 68 28 679 1852 514267562 514268737 0.000000e+00 1251.0
5 TraesCS3B01G437600 chr3D 92.166 868 63 4 1919 2786 514268757 514269619 0.000000e+00 1221.0
6 TraesCS3B01G437600 chr3D 89.227 854 58 15 2785 3612 514269675 514270520 0.000000e+00 1037.0
7 TraesCS3B01G437600 chr3D 90.462 671 26 16 1 666 514266941 514267578 0.000000e+00 850.0
8 TraesCS3B01G437600 chr3D 83.448 290 38 9 3661 3945 148714967 148714683 1.090000e-65 261.0
9 TraesCS3B01G437600 chr3D 77.019 161 27 10 3656 3810 453220514 453220670 2.530000e-12 84.2
10 TraesCS3B01G437600 chr3D 76.471 119 22 6 3658 3772 536281235 536281351 4.260000e-05 60.2
11 TraesCS3B01G437600 chr3D 100.000 28 0 0 3876 3903 330643162 330643189 7.000000e-03 52.8
12 TraesCS3B01G437600 chr2B 96.226 53 2 0 539 591 134045504 134045452 1.950000e-13 87.9
13 TraesCS3B01G437600 chr2B 96.774 31 1 0 3658 3688 153081130 153081100 7.000000e-03 52.8
14 TraesCS3B01G437600 chr6B 89.231 65 7 0 3859 3923 204126636 204126700 9.090000e-12 82.4
15 TraesCS3B01G437600 chr2D 94.340 53 3 0 539 591 82181972 82181920 9.090000e-12 82.4
16 TraesCS3B01G437600 chrUn 92.593 54 2 2 539 591 75836608 75836556 4.230000e-10 76.8
17 TraesCS3B01G437600 chrUn 92.593 54 2 2 539 591 322507549 322507601 4.230000e-10 76.8
18 TraesCS3B01G437600 chr1A 95.745 47 2 0 543 589 390098964 390098918 4.230000e-10 76.8
19 TraesCS3B01G437600 chr7B 91.071 56 4 1 539 593 255075448 255075393 1.520000e-09 75.0
20 TraesCS3B01G437600 chr7B 100.000 29 0 0 3657 3685 87188393 87188365 2.000000e-03 54.7
21 TraesCS3B01G437600 chr1D 90.741 54 5 0 539 592 258339638 258339691 5.470000e-09 73.1
22 TraesCS3B01G437600 chr1D 100.000 28 0 0 3658 3685 403547303 403547330 7.000000e-03 52.8
23 TraesCS3B01G437600 chr4A 76.860 121 20 7 3658 3773 435616751 435616634 1.180000e-05 62.1
24 TraesCS3B01G437600 chr7D 76.613 124 14 11 3658 3773 442280356 442280240 2.000000e-03 54.7
25 TraesCS3B01G437600 chr5D 100.000 29 0 0 3657 3685 549652297 549652269 2.000000e-03 54.7
26 TraesCS3B01G437600 chr2A 100.000 29 0 0 3875 3903 776207526 776207554 2.000000e-03 54.7
27 TraesCS3B01G437600 chr5A 100.000 28 0 0 3658 3685 419213806 419213833 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G437600 chr3B 676614605 676618550 3945 False 7287.00 7287 100.000000 1 3946 1 chr3B.!!$F1 3945
1 TraesCS3B01G437600 chr3A 649024648 649028353 3705 False 1555.00 3768 90.670333 1 3614 3 chr3A.!!$F1 3613
2 TraesCS3B01G437600 chr3D 514266941 514270520 3579 False 1089.75 1251 89.573250 1 3612 4 chr3D.!!$F4 3611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
507 641 0.036010 CAAGCCTGTCGTTCTGGGAT 60.036 55.0 7.89 0.0 35.96 3.85 F
1781 1977 0.110192 GAACGAAAAGGCTTCCTGCG 60.110 55.0 0.00 0.0 44.05 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2480 2708 0.107456 CTATTCCACATCCAGCGCCT 59.893 55.0 2.29 0.0 0.00 5.52 R
3733 4049 0.034863 GGCGGTAGGAAAATGGTCCA 60.035 55.0 0.00 0.0 40.48 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 127 9.706691 CACCGTATATTATGTAAAATGTCCTCT 57.293 33.333 0.00 0.00 0.00 3.69
158 162 7.384932 CCAGTCAATTTAACCAATTTTCCTGTC 59.615 37.037 0.00 0.00 32.24 3.51
194 198 2.567049 GGTGAGGTCCGACGAGTG 59.433 66.667 0.00 0.00 0.00 3.51
266 270 1.401539 GCCTTTTGATCGAGCAACCAC 60.402 52.381 16.94 2.37 0.00 4.16
363 492 2.660572 TGTTGGCAAAGGTGTACACAT 58.339 42.857 26.51 18.20 0.00 3.21
370 499 4.379813 GGCAAAGGTGTACACATCAATCAG 60.380 45.833 26.51 9.20 0.00 2.90
499 632 1.070758 ACATCTGTTCAAGCCTGTCGT 59.929 47.619 0.00 0.00 0.00 4.34
500 633 2.146342 CATCTGTTCAAGCCTGTCGTT 58.854 47.619 0.00 0.00 0.00 3.85
501 634 1.865865 TCTGTTCAAGCCTGTCGTTC 58.134 50.000 0.00 0.00 0.00 3.95
503 636 1.528586 CTGTTCAAGCCTGTCGTTCTG 59.471 52.381 0.00 0.00 0.00 3.02
507 641 0.036010 CAAGCCTGTCGTTCTGGGAT 60.036 55.000 7.89 0.00 35.96 3.85
523 657 3.760151 CTGGGATGCTGTGATTTCTTCAA 59.240 43.478 0.00 0.00 35.70 2.69
531 665 4.802999 CTGTGATTTCTTCAAGGAAAGCC 58.197 43.478 1.20 0.00 39.82 4.35
578 718 5.253330 ACCATGACAAGAATTATGGAACGT 58.747 37.500 9.22 0.00 42.05 3.99
584 724 5.425630 ACAAGAATTATGGAACGTAGGGAC 58.574 41.667 0.00 0.00 0.00 4.46
585 725 5.189145 ACAAGAATTATGGAACGTAGGGACT 59.811 40.000 0.00 0.00 46.37 3.85
653 794 4.761739 TCTTCAGGTCAATGGTGCTAAAAG 59.238 41.667 0.00 0.00 0.00 2.27
664 805 3.568007 TGGTGCTAAAAGATGGTTCACAC 59.432 43.478 0.00 0.00 0.00 3.82
665 806 3.057526 GGTGCTAAAAGATGGTTCACACC 60.058 47.826 0.00 0.00 44.56 4.16
666 807 3.057526 GTGCTAAAAGATGGTTCACACCC 60.058 47.826 0.00 0.00 43.49 4.61
667 808 2.492088 GCTAAAAGATGGTTCACACCCC 59.508 50.000 0.00 0.00 43.49 4.95
668 809 2.009681 AAAAGATGGTTCACACCCCC 57.990 50.000 0.00 0.00 43.49 5.40
669 810 1.158007 AAAGATGGTTCACACCCCCT 58.842 50.000 0.00 0.00 43.49 4.79
670 811 0.405585 AAGATGGTTCACACCCCCTG 59.594 55.000 0.00 0.00 43.49 4.45
671 812 1.678970 GATGGTTCACACCCCCTGC 60.679 63.158 0.00 0.00 43.49 4.85
672 813 2.424842 GATGGTTCACACCCCCTGCA 62.425 60.000 0.00 0.00 43.49 4.41
673 814 2.017668 ATGGTTCACACCCCCTGCAA 62.018 55.000 0.00 0.00 43.49 4.08
674 815 1.456705 GGTTCACACCCCCTGCAAA 60.457 57.895 0.00 0.00 37.03 3.68
675 816 1.045911 GGTTCACACCCCCTGCAAAA 61.046 55.000 0.00 0.00 37.03 2.44
676 817 0.827368 GTTCACACCCCCTGCAAAAA 59.173 50.000 0.00 0.00 0.00 1.94
704 845 3.168773 GGTTCACACCACACACAGT 57.831 52.632 0.00 0.00 43.61 3.55
740 885 1.719600 CTGGGCAGTTTCGAAGAGAG 58.280 55.000 0.00 0.00 38.43 3.20
746 895 2.333014 CAGTTTCGAAGAGAGAGGTGC 58.667 52.381 0.00 0.00 38.43 5.01
753 902 1.474478 GAAGAGAGAGGTGCATGTCGA 59.526 52.381 0.00 0.00 0.00 4.20
778 927 2.571757 CGCAGCGACCTCCTAACA 59.428 61.111 9.98 0.00 0.00 2.41
842 991 2.333225 GATCGCGAGGCTGATCGT 59.667 61.111 16.66 0.00 44.53 3.73
1159 1309 0.475044 TACGTGCCTCCCCAGTTTTT 59.525 50.000 0.00 0.00 0.00 1.94
1160 1310 0.475044 ACGTGCCTCCCCAGTTTTTA 59.525 50.000 0.00 0.00 0.00 1.52
1161 1311 0.879090 CGTGCCTCCCCAGTTTTTAC 59.121 55.000 0.00 0.00 0.00 2.01
1162 1312 1.254026 GTGCCTCCCCAGTTTTTACC 58.746 55.000 0.00 0.00 0.00 2.85
1163 1313 1.154430 TGCCTCCCCAGTTTTTACCT 58.846 50.000 0.00 0.00 0.00 3.08
1170 1320 4.177546 TCCCCAGTTTTTACCTAGGCTTA 58.822 43.478 9.30 0.00 0.00 3.09
1174 1324 5.593095 CCCAGTTTTTACCTAGGCTTATTCC 59.407 44.000 9.30 0.00 0.00 3.01
1199 1349 0.179029 CTCCTCTCTCCCTCGACCTC 60.179 65.000 0.00 0.00 0.00 3.85
1249 1419 1.950909 CTTGCCCGTGTTTAGTTTGGA 59.049 47.619 0.00 0.00 0.00 3.53
1250 1420 2.279935 TGCCCGTGTTTAGTTTGGAT 57.720 45.000 0.00 0.00 0.00 3.41
1263 1433 7.284489 TGTTTAGTTTGGATATATTCAGTGCCC 59.716 37.037 0.00 0.00 0.00 5.36
1266 1436 5.132648 AGTTTGGATATATTCAGTGCCCTCA 59.867 40.000 0.00 0.00 0.00 3.86
1282 1452 1.751351 CCTCAGTCAGTGGCGAATAGA 59.249 52.381 0.00 0.00 0.00 1.98
1332 1502 0.387202 CGTCAGGATCAGGGTAGCTG 59.613 60.000 0.00 0.00 0.00 4.24
1497 1667 8.380099 GGTCTGTATGTATGGAATATTGGGTTA 58.620 37.037 0.00 0.00 0.00 2.85
1543 1713 5.499139 TTCCTGTCAAAATCTGTGTTCAC 57.501 39.130 0.00 0.00 0.00 3.18
1547 1717 2.031157 GTCAAAATCTGTGTTCACCCCG 60.031 50.000 0.37 0.00 0.00 5.73
1564 1734 1.589779 CCCGCTTCGTAAATAACCGTC 59.410 52.381 0.00 0.00 0.00 4.79
1602 1772 2.149578 CAGTGCAATGCTATAGGGCTC 58.850 52.381 6.82 0.00 0.00 4.70
1698 1891 1.732917 TTTTTGGACAGGCACGCAG 59.267 52.632 0.00 0.00 0.00 5.18
1747 1943 8.423906 AGTATGGGAGTGGTATATTCTAACAG 57.576 38.462 0.00 0.00 0.00 3.16
1748 1944 8.232412 AGTATGGGAGTGGTATATTCTAACAGA 58.768 37.037 0.00 0.00 0.00 3.41
1781 1977 0.110192 GAACGAAAAGGCTTCCTGCG 60.110 55.000 0.00 0.00 44.05 5.18
1819 2015 7.395489 ACTTGAAATGTCATCCTGAAGCTTATT 59.605 33.333 0.00 0.00 32.48 1.40
1825 2021 6.240894 TGTCATCCTGAAGCTTATTTGAAGT 58.759 36.000 0.00 0.00 0.00 3.01
1855 2051 9.494271 AATTGCAGCTAAGATTCGAGAATTATA 57.506 29.630 0.00 0.00 0.00 0.98
1882 2105 6.598064 AGTTGGTATAGTAGCAAATCAACCAC 59.402 38.462 3.48 0.00 46.30 4.16
1943 2166 2.490115 AGCTCAGTAGACCACTCGAAAG 59.510 50.000 0.00 0.00 34.26 2.62
2110 2334 8.090831 TGAAGTCATCTGCGCTATATTAGATTT 58.909 33.333 9.73 0.00 0.00 2.17
2119 2343 8.256611 TGCGCTATATTAGATTTCATCTTTCC 57.743 34.615 9.73 0.00 40.76 3.13
2133 2361 7.649533 TTCATCTTTCCATGCATCAAAGTAT 57.350 32.000 20.05 12.93 0.00 2.12
2134 2362 7.034685 TCATCTTTCCATGCATCAAAGTATG 57.965 36.000 20.05 19.66 0.00 2.39
2222 2450 3.010420 GTGCCTCCCACTTTAATCAGTC 58.990 50.000 0.00 0.00 41.35 3.51
2309 2537 3.688185 GGAATACCTTTGGGAAGAACGAC 59.312 47.826 0.00 0.00 34.71 4.34
2324 2552 4.929781 AGAACGACTTATTTAGCCTACGG 58.070 43.478 0.00 0.00 0.00 4.02
2480 2708 0.975556 TACAGCTGGGATTCGGAGCA 60.976 55.000 19.93 0.00 35.03 4.26
2483 2711 2.203126 CTGGGATTCGGAGCAGGC 60.203 66.667 0.00 0.00 0.00 4.85
2507 2735 4.583871 CTGGATGTGGAATAGGAATAGGC 58.416 47.826 0.00 0.00 0.00 3.93
2510 2738 5.134339 TGGATGTGGAATAGGAATAGGCTTT 59.866 40.000 0.00 0.00 0.00 3.51
2516 2744 5.004448 GGAATAGGAATAGGCTTTGGCTAC 58.996 45.833 0.00 0.00 43.23 3.58
2531 2759 0.885879 GCTACGGTTTTGGAAAGGGG 59.114 55.000 0.00 0.00 0.00 4.79
2552 2780 2.951457 TTGCATATGACGAGAACGGA 57.049 45.000 6.97 0.00 44.46 4.69
2589 2817 3.620374 CAGGAGATCATTTCAGAACACCG 59.380 47.826 0.00 0.00 0.00 4.94
2603 2831 1.221021 CACCGGGAGCCTTCCTTAC 59.779 63.158 6.32 0.00 43.49 2.34
2614 2842 2.541556 CCTTCCTTACGAGTAAGCAGC 58.458 52.381 15.47 0.00 40.79 5.25
2621 2849 2.751166 ACGAGTAAGCAGCAACTCAT 57.249 45.000 21.49 9.06 41.83 2.90
2640 2869 8.535592 CAACTCATTCTAAGCTTTGTACTATCG 58.464 37.037 3.20 0.00 0.00 2.92
2670 2899 1.005215 CTCCATTTGGGCTTCTCCTGT 59.995 52.381 0.00 0.00 36.21 4.00
2685 2914 0.167470 CCTGTTGCTCGACATGCTTG 59.833 55.000 0.00 0.00 0.00 4.01
2799 3086 4.571984 TGTGAACTGTCTTTGACATGTCTG 59.428 41.667 25.55 15.56 41.94 3.51
2922 3217 1.067974 TCAAAGCGACGACAAAGGAGA 59.932 47.619 0.00 0.00 0.00 3.71
2939 3234 1.215647 GATCGACAAGTGGAGGCGT 59.784 57.895 0.00 0.00 0.00 5.68
2946 3241 1.134788 ACAAGTGGAGGCGTATGTAGC 60.135 52.381 0.00 0.00 0.00 3.58
2955 3250 0.158928 GCGTATGTAGCGCGAACATC 59.841 55.000 27.41 19.36 45.36 3.06
2956 3251 1.472990 CGTATGTAGCGCGAACATCA 58.527 50.000 27.41 15.23 38.49 3.07
2957 3252 1.187271 CGTATGTAGCGCGAACATCAC 59.813 52.381 27.41 21.71 38.49 3.06
2958 3253 2.190161 GTATGTAGCGCGAACATCACA 58.810 47.619 27.41 13.17 38.49 3.58
2959 3254 0.999406 ATGTAGCGCGAACATCACAC 59.001 50.000 21.14 3.26 32.02 3.82
2999 3300 9.530633 AGGTTAGTATTTATCAGAAGCTTAACG 57.469 33.333 0.00 0.00 0.00 3.18
3028 3329 1.655885 GAACCCGAGACGACCTCCTC 61.656 65.000 0.00 0.00 38.71 3.71
3029 3330 2.139731 AACCCGAGACGACCTCCTCT 62.140 60.000 0.00 0.00 38.71 3.69
3180 3485 3.361977 GCACCACCGGAATTGCGT 61.362 61.111 18.34 3.72 0.00 5.24
3197 3502 4.409218 TGGCGTCGCTGTCGGTAC 62.409 66.667 18.11 0.00 36.13 3.34
3198 3503 4.112341 GGCGTCGCTGTCGGTACT 62.112 66.667 18.11 0.00 36.13 2.73
3199 3504 2.576317 GCGTCGCTGTCGGTACTC 60.576 66.667 10.68 0.00 36.13 2.59
3200 3505 2.276493 CGTCGCTGTCGGTACTCG 60.276 66.667 0.00 0.00 40.90 4.18
3201 3506 2.099831 GTCGCTGTCGGTACTCGG 59.900 66.667 0.00 0.00 39.77 4.63
3202 3507 2.359107 TCGCTGTCGGTACTCGGT 60.359 61.111 0.00 0.00 39.77 4.69
3203 3508 1.079197 TCGCTGTCGGTACTCGGTA 60.079 57.895 0.00 0.00 39.77 4.02
3257 3563 2.024414 GCATTGAAATACTCGGGCCTT 58.976 47.619 0.84 0.00 0.00 4.35
3292 3598 5.634896 CCTCAAATCAAATCTTTCTCCGTG 58.365 41.667 0.00 0.00 0.00 4.94
3300 3606 5.929992 TCAAATCTTTCTCCGTGTCGTTAAT 59.070 36.000 0.00 0.00 0.00 1.40
3305 3611 2.536365 TCTCCGTGTCGTTAATCATGC 58.464 47.619 0.00 0.00 0.00 4.06
3306 3612 1.593006 CTCCGTGTCGTTAATCATGCC 59.407 52.381 0.00 0.00 0.00 4.40
3319 3625 7.439955 TCGTTAATCATGCCGTCTGTATTTAAT 59.560 33.333 0.00 0.00 0.00 1.40
3366 3672 1.287730 GCTGGAGTCACTGCTGTTCG 61.288 60.000 5.11 0.00 33.20 3.95
3414 3720 2.907910 CAAGATTTGCGTTCCTCCAG 57.092 50.000 0.00 0.00 0.00 3.86
3424 3730 1.135257 CGTTCCTCCAGAGCAGTAGTG 60.135 57.143 0.00 0.00 0.00 2.74
3482 3797 5.109627 CGAAACGCGATTAATGATTTCGTTC 60.110 40.000 15.93 6.14 44.57 3.95
3618 3934 2.746277 GGTCAGCGTTTCCGGCAT 60.746 61.111 0.00 0.00 33.68 4.40
3619 3935 2.750888 GGTCAGCGTTTCCGGCATC 61.751 63.158 0.00 0.00 33.68 3.91
3620 3936 2.435938 TCAGCGTTTCCGGCATCC 60.436 61.111 0.00 0.00 33.68 3.51
3624 3940 3.202001 CGTTTCCGGCATCCGCAT 61.202 61.111 0.00 0.00 46.86 4.73
3625 3941 2.715624 GTTTCCGGCATCCGCATC 59.284 61.111 0.00 0.00 46.86 3.91
3626 3942 1.819632 GTTTCCGGCATCCGCATCT 60.820 57.895 0.00 0.00 46.86 2.90
3627 3943 1.819208 TTTCCGGCATCCGCATCTG 60.819 57.895 0.00 0.00 46.86 2.90
3628 3944 2.250741 TTTCCGGCATCCGCATCTGA 62.251 55.000 0.00 0.00 46.86 3.27
3629 3945 2.031616 CCGGCATCCGCATCTGAT 59.968 61.111 0.00 0.00 46.86 2.90
3630 3946 2.322830 CCGGCATCCGCATCTGATG 61.323 63.158 13.26 13.26 46.86 3.07
3631 3947 1.596203 CGGCATCCGCATCTGATGT 60.596 57.895 18.19 0.00 41.17 3.06
3632 3948 1.162181 CGGCATCCGCATCTGATGTT 61.162 55.000 18.19 0.01 41.17 2.71
3633 3949 0.590195 GGCATCCGCATCTGATGTTC 59.410 55.000 18.19 2.71 41.32 3.18
3634 3950 1.590932 GCATCCGCATCTGATGTTCT 58.409 50.000 18.19 0.00 41.32 3.01
3635 3951 1.945394 GCATCCGCATCTGATGTTCTT 59.055 47.619 18.19 0.33 41.32 2.52
3636 3952 3.133691 GCATCCGCATCTGATGTTCTTA 58.866 45.455 18.19 1.95 41.32 2.10
3637 3953 3.186001 GCATCCGCATCTGATGTTCTTAG 59.814 47.826 18.19 6.63 41.32 2.18
3638 3954 4.375272 CATCCGCATCTGATGTTCTTAGT 58.625 43.478 18.19 0.00 35.86 2.24
3639 3955 4.046938 TCCGCATCTGATGTTCTTAGTC 57.953 45.455 18.19 0.00 0.00 2.59
3640 3956 3.126831 CCGCATCTGATGTTCTTAGTCC 58.873 50.000 18.19 0.00 0.00 3.85
3641 3957 3.430790 CCGCATCTGATGTTCTTAGTCCA 60.431 47.826 18.19 0.00 0.00 4.02
3642 3958 3.801050 CGCATCTGATGTTCTTAGTCCAG 59.199 47.826 18.19 0.00 0.00 3.86
3643 3959 4.125703 GCATCTGATGTTCTTAGTCCAGG 58.874 47.826 18.19 0.00 0.00 4.45
3644 3960 4.141846 GCATCTGATGTTCTTAGTCCAGGA 60.142 45.833 18.19 0.00 0.00 3.86
3645 3961 5.454471 GCATCTGATGTTCTTAGTCCAGGAT 60.454 44.000 18.19 0.00 0.00 3.24
3646 3962 5.860941 TCTGATGTTCTTAGTCCAGGATC 57.139 43.478 0.00 0.00 0.00 3.36
3647 3963 5.272402 TCTGATGTTCTTAGTCCAGGATCA 58.728 41.667 0.00 0.00 0.00 2.92
3648 3964 5.362143 TCTGATGTTCTTAGTCCAGGATCAG 59.638 44.000 0.00 0.00 37.83 2.90
3649 3965 4.406972 TGATGTTCTTAGTCCAGGATCAGG 59.593 45.833 0.00 0.00 0.00 3.86
3650 3966 3.107601 TGTTCTTAGTCCAGGATCAGGG 58.892 50.000 0.00 0.00 0.00 4.45
3651 3967 3.108376 GTTCTTAGTCCAGGATCAGGGT 58.892 50.000 0.00 0.00 0.00 4.34
3652 3968 2.752030 TCTTAGTCCAGGATCAGGGTG 58.248 52.381 0.00 0.00 0.00 4.61
3653 3969 2.314852 TCTTAGTCCAGGATCAGGGTGA 59.685 50.000 0.00 0.00 0.00 4.02
3654 3970 2.940514 TAGTCCAGGATCAGGGTGAA 57.059 50.000 0.00 0.00 0.00 3.18
3655 3971 1.280457 AGTCCAGGATCAGGGTGAAC 58.720 55.000 0.00 0.00 0.00 3.18
3656 3972 0.984230 GTCCAGGATCAGGGTGAACA 59.016 55.000 0.00 0.00 0.00 3.18
3657 3973 1.351017 GTCCAGGATCAGGGTGAACAA 59.649 52.381 0.00 0.00 0.00 2.83
3658 3974 1.630369 TCCAGGATCAGGGTGAACAAG 59.370 52.381 0.00 0.00 0.00 3.16
3659 3975 1.630369 CCAGGATCAGGGTGAACAAGA 59.370 52.381 0.00 0.00 0.00 3.02
3660 3976 2.355513 CCAGGATCAGGGTGAACAAGAG 60.356 54.545 0.00 0.00 0.00 2.85
3661 3977 1.912043 AGGATCAGGGTGAACAAGAGG 59.088 52.381 0.00 0.00 0.00 3.69
3662 3978 1.680249 GGATCAGGGTGAACAAGAGGC 60.680 57.143 0.00 0.00 0.00 4.70
3663 3979 1.280421 GATCAGGGTGAACAAGAGGCT 59.720 52.381 0.00 0.00 0.00 4.58
3664 3980 2.024176 TCAGGGTGAACAAGAGGCTA 57.976 50.000 0.00 0.00 0.00 3.93
3665 3981 2.334977 TCAGGGTGAACAAGAGGCTAA 58.665 47.619 0.00 0.00 0.00 3.09
3666 3982 2.708861 TCAGGGTGAACAAGAGGCTAAA 59.291 45.455 0.00 0.00 0.00 1.85
3667 3983 3.330701 TCAGGGTGAACAAGAGGCTAAAT 59.669 43.478 0.00 0.00 0.00 1.40
3668 3984 4.082125 CAGGGTGAACAAGAGGCTAAATT 58.918 43.478 0.00 0.00 0.00 1.82
3669 3985 4.524328 CAGGGTGAACAAGAGGCTAAATTT 59.476 41.667 0.00 0.00 0.00 1.82
3670 3986 4.767409 AGGGTGAACAAGAGGCTAAATTTC 59.233 41.667 0.00 0.00 0.00 2.17
3671 3987 4.379499 GGGTGAACAAGAGGCTAAATTTCG 60.379 45.833 0.00 0.00 0.00 3.46
3672 3988 4.215613 GGTGAACAAGAGGCTAAATTTCGT 59.784 41.667 0.00 0.00 0.00 3.85
3673 3989 5.147162 GTGAACAAGAGGCTAAATTTCGTG 58.853 41.667 0.00 0.00 0.00 4.35
3674 3990 4.819630 TGAACAAGAGGCTAAATTTCGTGT 59.180 37.500 0.00 0.00 35.56 4.49
3675 3991 5.298276 TGAACAAGAGGCTAAATTTCGTGTT 59.702 36.000 7.74 7.74 43.03 3.32
3676 3992 5.767816 ACAAGAGGCTAAATTTCGTGTTT 57.232 34.783 0.00 0.00 31.13 2.83
3677 3993 6.144078 ACAAGAGGCTAAATTTCGTGTTTT 57.856 33.333 0.00 0.00 31.13 2.43
3678 3994 5.977129 ACAAGAGGCTAAATTTCGTGTTTTG 59.023 36.000 0.00 0.00 31.13 2.44
3679 3995 6.183360 ACAAGAGGCTAAATTTCGTGTTTTGA 60.183 34.615 0.00 0.00 31.13 2.69
3680 3996 5.758924 AGAGGCTAAATTTCGTGTTTTGAC 58.241 37.500 0.00 0.00 0.00 3.18
3681 3997 4.866921 AGGCTAAATTTCGTGTTTTGACC 58.133 39.130 0.00 0.00 0.00 4.02
3682 3998 3.985279 GGCTAAATTTCGTGTTTTGACCC 59.015 43.478 0.00 0.00 0.00 4.46
3683 3999 4.261867 GGCTAAATTTCGTGTTTTGACCCT 60.262 41.667 0.00 0.00 0.00 4.34
3684 4000 5.286438 GCTAAATTTCGTGTTTTGACCCTT 58.714 37.500 0.00 0.00 0.00 3.95
3685 4001 5.401376 GCTAAATTTCGTGTTTTGACCCTTC 59.599 40.000 0.00 0.00 0.00 3.46
3686 4002 5.592104 AAATTTCGTGTTTTGACCCTTCT 57.408 34.783 0.00 0.00 0.00 2.85
3687 4003 4.830826 ATTTCGTGTTTTGACCCTTCTC 57.169 40.909 0.00 0.00 0.00 2.87
3688 4004 2.992124 TCGTGTTTTGACCCTTCTCA 57.008 45.000 0.00 0.00 0.00 3.27
3689 4005 3.269538 TCGTGTTTTGACCCTTCTCAA 57.730 42.857 0.00 0.00 0.00 3.02
3690 4006 3.611970 TCGTGTTTTGACCCTTCTCAAA 58.388 40.909 0.00 0.00 38.18 2.69
3691 4007 3.375922 TCGTGTTTTGACCCTTCTCAAAC 59.624 43.478 0.00 0.00 39.37 2.93
3692 4008 3.127895 CGTGTTTTGACCCTTCTCAAACA 59.872 43.478 0.00 0.00 39.37 2.83
3693 4009 4.421058 GTGTTTTGACCCTTCTCAAACAC 58.579 43.478 9.69 9.69 42.72 3.32
3694 4010 4.157840 GTGTTTTGACCCTTCTCAAACACT 59.842 41.667 15.59 0.00 44.01 3.55
3695 4011 4.398044 TGTTTTGACCCTTCTCAAACACTC 59.602 41.667 0.00 0.00 39.37 3.51
3696 4012 3.924114 TTGACCCTTCTCAAACACTCA 57.076 42.857 0.00 0.00 0.00 3.41
3697 4013 3.924114 TGACCCTTCTCAAACACTCAA 57.076 42.857 0.00 0.00 0.00 3.02
3698 4014 4.437682 TGACCCTTCTCAAACACTCAAT 57.562 40.909 0.00 0.00 0.00 2.57
3699 4015 4.389374 TGACCCTTCTCAAACACTCAATC 58.611 43.478 0.00 0.00 0.00 2.67
3700 4016 4.141505 TGACCCTTCTCAAACACTCAATCA 60.142 41.667 0.00 0.00 0.00 2.57
3701 4017 4.392940 ACCCTTCTCAAACACTCAATCAG 58.607 43.478 0.00 0.00 0.00 2.90
3702 4018 4.141390 ACCCTTCTCAAACACTCAATCAGT 60.141 41.667 0.00 0.00 34.67 3.41
3713 4029 4.371624 ACTCAATCAGTGAATCAACCCA 57.628 40.909 0.00 0.00 35.22 4.51
3714 4030 4.330250 ACTCAATCAGTGAATCAACCCAG 58.670 43.478 0.00 0.00 35.22 4.45
3715 4031 4.202503 ACTCAATCAGTGAATCAACCCAGT 60.203 41.667 0.00 0.00 35.22 4.00
3716 4032 4.728772 TCAATCAGTGAATCAACCCAGTT 58.271 39.130 0.00 0.00 31.51 3.16
3717 4033 5.139727 TCAATCAGTGAATCAACCCAGTTT 58.860 37.500 0.00 0.00 31.51 2.66
3718 4034 5.598005 TCAATCAGTGAATCAACCCAGTTTT 59.402 36.000 0.00 0.00 31.51 2.43
3719 4035 6.098124 TCAATCAGTGAATCAACCCAGTTTTT 59.902 34.615 0.00 0.00 31.51 1.94
3749 4065 7.654022 TTTGATATTGGACCATTTTCCTACC 57.346 36.000 0.00 0.00 36.51 3.18
3750 4066 5.373222 TGATATTGGACCATTTTCCTACCG 58.627 41.667 0.00 0.00 36.51 4.02
3751 4067 1.828979 TTGGACCATTTTCCTACCGC 58.171 50.000 0.00 0.00 36.51 5.68
3752 4068 0.034863 TGGACCATTTTCCTACCGCC 60.035 55.000 0.00 0.00 36.51 6.13
3753 4069 1.093496 GGACCATTTTCCTACCGCCG 61.093 60.000 0.00 0.00 32.24 6.46
3754 4070 1.078001 ACCATTTTCCTACCGCCGG 60.078 57.895 0.00 0.00 0.00 6.13
3755 4071 1.822186 CCATTTTCCTACCGCCGGG 60.822 63.158 8.57 0.00 40.11 5.73
3756 4072 1.822186 CATTTTCCTACCGCCGGGG 60.822 63.158 12.43 12.43 43.62 5.73
3757 4073 1.996748 ATTTTCCTACCGCCGGGGA 60.997 57.895 21.95 6.13 39.97 4.81
3758 4074 1.350310 ATTTTCCTACCGCCGGGGAT 61.350 55.000 21.95 4.92 39.97 3.85
3759 4075 1.974973 TTTTCCTACCGCCGGGGATC 61.975 60.000 21.95 0.00 39.97 3.36
3760 4076 2.884179 TTTCCTACCGCCGGGGATCT 62.884 60.000 21.95 4.28 39.97 2.75
3761 4077 3.303928 CCTACCGCCGGGGATCTC 61.304 72.222 21.95 0.00 39.97 2.75
3762 4078 3.671411 CTACCGCCGGGGATCTCG 61.671 72.222 21.95 4.82 39.97 4.04
3769 4085 3.671411 CGGGGATCTCGGCGGTAG 61.671 72.222 7.21 0.00 0.00 3.18
3770 4086 3.303928 GGGGATCTCGGCGGTAGG 61.304 72.222 7.21 0.00 0.00 3.18
3771 4087 3.303928 GGGATCTCGGCGGTAGGG 61.304 72.222 7.21 0.00 0.00 3.53
3772 4088 2.521224 GGATCTCGGCGGTAGGGT 60.521 66.667 7.21 0.00 0.00 4.34
3773 4089 2.132352 GGATCTCGGCGGTAGGGTT 61.132 63.158 7.21 0.00 0.00 4.11
3774 4090 1.067582 GATCTCGGCGGTAGGGTTG 59.932 63.158 7.21 0.00 0.00 3.77
3775 4091 2.973180 GATCTCGGCGGTAGGGTTGC 62.973 65.000 7.21 0.00 0.00 4.17
3778 4094 4.132441 CGGCGGTAGGGTTGCGTA 62.132 66.667 0.00 0.00 0.00 4.42
3779 4095 2.202837 GGCGGTAGGGTTGCGTAG 60.203 66.667 0.00 0.00 0.00 3.51
3795 4111 2.588620 CGTAGCCTACCCTCAGAATCT 58.411 52.381 0.00 0.00 0.00 2.40
3796 4112 2.959707 CGTAGCCTACCCTCAGAATCTT 59.040 50.000 0.00 0.00 0.00 2.40
3797 4113 3.385111 CGTAGCCTACCCTCAGAATCTTT 59.615 47.826 0.00 0.00 0.00 2.52
3798 4114 3.922171 AGCCTACCCTCAGAATCTTTG 57.078 47.619 0.00 0.00 0.00 2.77
3799 4115 2.507471 AGCCTACCCTCAGAATCTTTGG 59.493 50.000 0.00 0.00 0.00 3.28
3800 4116 2.924421 CCTACCCTCAGAATCTTTGGC 58.076 52.381 0.00 0.00 0.00 4.52
3801 4117 2.555199 CTACCCTCAGAATCTTTGGCG 58.445 52.381 0.00 0.00 0.00 5.69
3802 4118 0.035056 ACCCTCAGAATCTTTGGCGG 60.035 55.000 0.00 0.00 0.00 6.13
3803 4119 0.035056 CCCTCAGAATCTTTGGCGGT 60.035 55.000 0.00 0.00 0.00 5.68
3804 4120 1.209504 CCCTCAGAATCTTTGGCGGTA 59.790 52.381 0.00 0.00 0.00 4.02
3805 4121 2.555199 CCTCAGAATCTTTGGCGGTAG 58.445 52.381 0.00 0.00 0.00 3.18
3806 4122 2.168521 CCTCAGAATCTTTGGCGGTAGA 59.831 50.000 0.00 0.00 0.00 2.59
3807 4123 3.452474 CTCAGAATCTTTGGCGGTAGAG 58.548 50.000 0.00 0.00 0.00 2.43
3808 4124 2.832129 TCAGAATCTTTGGCGGTAGAGT 59.168 45.455 0.00 0.00 0.00 3.24
3809 4125 4.021229 TCAGAATCTTTGGCGGTAGAGTA 58.979 43.478 0.00 0.00 0.00 2.59
3810 4126 4.464951 TCAGAATCTTTGGCGGTAGAGTAA 59.535 41.667 0.00 0.00 0.00 2.24
3811 4127 4.567159 CAGAATCTTTGGCGGTAGAGTAAC 59.433 45.833 0.00 0.00 0.00 2.50
3812 4128 2.642139 TCTTTGGCGGTAGAGTAACG 57.358 50.000 0.00 0.00 42.93 3.18
3813 4129 1.203052 TCTTTGGCGGTAGAGTAACGG 59.797 52.381 0.00 0.00 39.77 4.44
3814 4130 0.968405 TTTGGCGGTAGAGTAACGGT 59.032 50.000 0.00 0.00 39.77 4.83
3815 4131 1.832883 TTGGCGGTAGAGTAACGGTA 58.167 50.000 0.00 0.00 39.77 4.02
3816 4132 1.382522 TGGCGGTAGAGTAACGGTAG 58.617 55.000 0.00 0.00 39.77 3.18
3817 4133 0.029967 GGCGGTAGAGTAACGGTAGC 59.970 60.000 0.00 0.00 39.77 3.58
3818 4134 0.029967 GCGGTAGAGTAACGGTAGCC 59.970 60.000 0.00 0.00 39.77 3.93
3828 4144 2.336809 CGGTAGCCGCCATCTCTC 59.663 66.667 0.00 0.00 41.17 3.20
3829 4145 2.196925 CGGTAGCCGCCATCTCTCT 61.197 63.158 0.00 0.00 41.17 3.10
3830 4146 0.889638 CGGTAGCCGCCATCTCTCTA 60.890 60.000 0.00 0.00 41.17 2.43
3831 4147 1.329256 GGTAGCCGCCATCTCTCTAA 58.671 55.000 0.00 0.00 0.00 2.10
3832 4148 1.000052 GGTAGCCGCCATCTCTCTAAC 60.000 57.143 0.00 0.00 0.00 2.34
3833 4149 1.681793 GTAGCCGCCATCTCTCTAACA 59.318 52.381 0.00 0.00 0.00 2.41
3834 4150 1.418334 AGCCGCCATCTCTCTAACAT 58.582 50.000 0.00 0.00 0.00 2.71
3835 4151 1.342819 AGCCGCCATCTCTCTAACATC 59.657 52.381 0.00 0.00 0.00 3.06
3836 4152 1.606737 GCCGCCATCTCTCTAACATCC 60.607 57.143 0.00 0.00 0.00 3.51
3837 4153 1.001406 CCGCCATCTCTCTAACATCCC 59.999 57.143 0.00 0.00 0.00 3.85
3838 4154 1.688735 CGCCATCTCTCTAACATCCCA 59.311 52.381 0.00 0.00 0.00 4.37
3839 4155 2.103094 CGCCATCTCTCTAACATCCCAA 59.897 50.000 0.00 0.00 0.00 4.12
3840 4156 3.471680 GCCATCTCTCTAACATCCCAAC 58.528 50.000 0.00 0.00 0.00 3.77
3841 4157 3.118261 GCCATCTCTCTAACATCCCAACA 60.118 47.826 0.00 0.00 0.00 3.33
3842 4158 4.446371 CCATCTCTCTAACATCCCAACAC 58.554 47.826 0.00 0.00 0.00 3.32
3843 4159 4.163078 CCATCTCTCTAACATCCCAACACT 59.837 45.833 0.00 0.00 0.00 3.55
3844 4160 4.808414 TCTCTCTAACATCCCAACACTG 57.192 45.455 0.00 0.00 0.00 3.66
3845 4161 4.416516 TCTCTCTAACATCCCAACACTGA 58.583 43.478 0.00 0.00 0.00 3.41
3846 4162 4.220821 TCTCTCTAACATCCCAACACTGAC 59.779 45.833 0.00 0.00 0.00 3.51
3847 4163 3.901222 TCTCTAACATCCCAACACTGACA 59.099 43.478 0.00 0.00 0.00 3.58
3848 4164 4.532126 TCTCTAACATCCCAACACTGACAT 59.468 41.667 0.00 0.00 0.00 3.06
3849 4165 4.578871 TCTAACATCCCAACACTGACATG 58.421 43.478 0.00 0.00 0.00 3.21
3850 4166 2.205022 ACATCCCAACACTGACATGG 57.795 50.000 0.00 0.00 0.00 3.66
3851 4167 0.813184 CATCCCAACACTGACATGGC 59.187 55.000 0.00 0.00 32.71 4.40
3852 4168 0.405198 ATCCCAACACTGACATGGCA 59.595 50.000 0.00 0.00 32.71 4.92
3853 4169 0.250858 TCCCAACACTGACATGGCAG 60.251 55.000 27.47 27.47 41.63 4.85
3854 4170 0.250858 CCCAACACTGACATGGCAGA 60.251 55.000 35.25 0.00 39.20 4.26
3855 4171 0.877071 CCAACACTGACATGGCAGAC 59.123 55.000 35.25 2.44 39.20 3.51
3856 4172 1.544093 CCAACACTGACATGGCAGACT 60.544 52.381 35.25 15.85 39.20 3.24
3857 4173 2.224606 CAACACTGACATGGCAGACTT 58.775 47.619 35.25 20.66 39.20 3.01
3858 4174 2.175878 ACACTGACATGGCAGACTTC 57.824 50.000 35.25 2.59 39.20 3.01
3859 4175 1.271054 ACACTGACATGGCAGACTTCC 60.271 52.381 35.25 0.00 39.20 3.46
3860 4176 1.002888 CACTGACATGGCAGACTTCCT 59.997 52.381 35.25 8.59 39.20 3.36
3861 4177 2.234661 CACTGACATGGCAGACTTCCTA 59.765 50.000 35.25 0.00 39.20 2.94
3862 4178 2.234908 ACTGACATGGCAGACTTCCTAC 59.765 50.000 35.25 0.00 39.20 3.18
3863 4179 1.555075 TGACATGGCAGACTTCCTACC 59.445 52.381 0.00 0.00 0.00 3.18
3864 4180 0.537188 ACATGGCAGACTTCCTACCG 59.463 55.000 0.00 0.00 30.44 4.02
3865 4181 0.811616 CATGGCAGACTTCCTACCGC 60.812 60.000 0.00 0.00 30.44 5.68
3866 4182 0.978146 ATGGCAGACTTCCTACCGCT 60.978 55.000 0.00 0.00 30.44 5.52
3867 4183 1.153549 GGCAGACTTCCTACCGCTG 60.154 63.158 0.00 0.00 0.00 5.18
3868 4184 1.153549 GCAGACTTCCTACCGCTGG 60.154 63.158 0.00 0.00 0.00 4.85
3869 4185 1.153549 CAGACTTCCTACCGCTGGC 60.154 63.158 0.00 0.00 0.00 4.85
3870 4186 2.202756 GACTTCCTACCGCTGGCG 60.203 66.667 8.08 8.08 39.44 5.69
3887 4203 2.203209 GGCCTTGGCGGTAGGATG 60.203 66.667 5.49 0.00 34.56 3.51
3888 4204 2.590092 GCCTTGGCGGTAGGATGT 59.410 61.111 0.00 0.00 34.56 3.06
3889 4205 1.819632 GCCTTGGCGGTAGGATGTG 60.820 63.158 0.00 0.00 34.56 3.21
3890 4206 1.819632 CCTTGGCGGTAGGATGTGC 60.820 63.158 0.00 0.00 34.56 4.57
3891 4207 1.078497 CTTGGCGGTAGGATGTGCA 60.078 57.895 0.00 0.00 0.00 4.57
3892 4208 0.676466 CTTGGCGGTAGGATGTGCAA 60.676 55.000 0.00 0.00 0.00 4.08
3893 4209 0.958382 TTGGCGGTAGGATGTGCAAC 60.958 55.000 0.00 0.00 37.35 4.17
3894 4210 2.112815 GGCGGTAGGATGTGCAACC 61.113 63.158 0.00 0.00 34.36 3.77
3895 4211 2.112815 GCGGTAGGATGTGCAACCC 61.113 63.158 0.00 0.00 34.36 4.11
3896 4212 1.602237 CGGTAGGATGTGCAACCCT 59.398 57.895 7.76 7.76 34.36 4.34
3897 4213 0.828022 CGGTAGGATGTGCAACCCTA 59.172 55.000 6.05 6.05 34.36 3.53
3899 4215 2.327200 GTAGGATGTGCAACCCTACC 57.673 55.000 21.07 7.16 44.02 3.18
3900 4216 0.828022 TAGGATGTGCAACCCTACCG 59.172 55.000 6.05 0.00 34.36 4.02
3901 4217 2.112815 GGATGTGCAACCCTACCGC 61.113 63.158 0.00 0.00 34.36 5.68
3902 4218 2.045340 ATGTGCAACCCTACCGCC 60.045 61.111 0.00 0.00 34.36 6.13
3903 4219 3.969250 ATGTGCAACCCTACCGCCG 62.969 63.158 0.00 0.00 34.36 6.46
3904 4220 4.382320 GTGCAACCCTACCGCCGA 62.382 66.667 0.00 0.00 0.00 5.54
3905 4221 4.077184 TGCAACCCTACCGCCGAG 62.077 66.667 0.00 0.00 0.00 4.63
3924 4240 2.510906 GCCATGGCGATAGGGTGT 59.489 61.111 23.48 0.00 0.00 4.16
3925 4241 1.893808 GCCATGGCGATAGGGTGTG 60.894 63.158 23.48 0.00 0.00 3.82
3926 4242 1.893808 CCATGGCGATAGGGTGTGC 60.894 63.158 0.00 0.00 0.00 4.57
3927 4243 1.153188 CATGGCGATAGGGTGTGCA 60.153 57.895 0.00 0.00 0.00 4.57
3928 4244 0.747644 CATGGCGATAGGGTGTGCAA 60.748 55.000 0.00 0.00 0.00 4.08
3929 4245 0.748005 ATGGCGATAGGGTGTGCAAC 60.748 55.000 0.00 0.00 37.35 4.17
3937 4253 3.497879 GGTGTGCAACCCTATCGC 58.502 61.111 6.76 0.00 44.02 4.58
3938 4254 1.376683 GGTGTGCAACCCTATCGCA 60.377 57.895 6.76 0.00 44.02 5.10
3939 4255 0.958382 GGTGTGCAACCCTATCGCAA 60.958 55.000 6.76 0.00 44.02 4.85
3940 4256 0.878416 GTGTGCAACCCTATCGCAAA 59.122 50.000 0.00 0.00 37.41 3.68
3941 4257 1.268352 GTGTGCAACCCTATCGCAAAA 59.732 47.619 0.00 0.00 37.41 2.44
3942 4258 1.268352 TGTGCAACCCTATCGCAAAAC 59.732 47.619 0.00 0.00 37.41 2.43
3943 4259 1.268352 GTGCAACCCTATCGCAAAACA 59.732 47.619 0.00 0.00 37.41 2.83
3944 4260 1.957177 TGCAACCCTATCGCAAAACAA 59.043 42.857 0.00 0.00 31.46 2.83
3945 4261 2.287909 TGCAACCCTATCGCAAAACAAC 60.288 45.455 0.00 0.00 31.46 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 127 5.163184 TGGTTAAATTGACTGGGTGTGAGTA 60.163 40.000 0.00 0.00 0.00 2.59
158 162 6.176975 TCACCGCAAACTTTAACATAGATG 57.823 37.500 0.00 0.00 0.00 2.90
165 169 2.031420 GGACCTCACCGCAAACTTTAAC 60.031 50.000 0.00 0.00 0.00 2.01
266 270 7.417116 ATGAGAAACATTTTGCTTATAGCAGGG 60.417 37.037 1.29 0.00 43.87 4.45
318 322 1.827399 TATAAGCTAGCTGCCCGCCC 61.827 60.000 20.16 0.00 44.23 6.13
363 492 1.649321 ACTGTGAGGAGGCTGATTGA 58.351 50.000 0.00 0.00 0.00 2.57
370 499 5.611374 TGCTTATTATAACTGTGAGGAGGC 58.389 41.667 0.00 0.00 0.00 4.70
499 632 3.726557 AGAAATCACAGCATCCCAGAA 57.273 42.857 0.00 0.00 0.00 3.02
500 633 3.009363 TGAAGAAATCACAGCATCCCAGA 59.991 43.478 0.00 0.00 31.50 3.86
501 634 3.349927 TGAAGAAATCACAGCATCCCAG 58.650 45.455 0.00 0.00 31.50 4.45
503 636 3.129988 CCTTGAAGAAATCACAGCATCCC 59.870 47.826 0.00 0.00 37.92 3.85
507 641 4.261741 GCTTTCCTTGAAGAAATCACAGCA 60.262 41.667 0.00 0.00 37.92 4.41
523 657 2.754946 TTGAATCGTACGGCTTTCCT 57.245 45.000 16.52 0.00 0.00 3.36
578 718 8.783660 ATAGTGATCATGAAAAGTAGTCCCTA 57.216 34.615 0.00 0.00 0.00 3.53
609 749 8.236586 TGAAGATTCATGATTCCTTAAACGTTG 58.763 33.333 12.82 0.00 31.01 4.10
618 758 5.705397 TGACCTGAAGATTCATGATTCCT 57.295 39.130 12.82 1.59 36.46 3.36
653 794 1.678970 GCAGGGGGTGTGAACCATC 60.679 63.158 0.00 0.00 0.00 3.51
678 819 3.766591 TGTGTGGTGTGAACCATCTTTTT 59.233 39.130 0.11 0.00 42.41 1.94
679 820 3.130340 GTGTGTGGTGTGAACCATCTTTT 59.870 43.478 0.11 0.00 42.41 2.27
680 821 2.687935 GTGTGTGGTGTGAACCATCTTT 59.312 45.455 0.11 0.00 42.41 2.52
681 822 2.297701 GTGTGTGGTGTGAACCATCTT 58.702 47.619 0.11 0.00 42.41 2.40
682 823 1.211703 TGTGTGTGGTGTGAACCATCT 59.788 47.619 0.11 0.00 42.41 2.90
683 824 1.603802 CTGTGTGTGGTGTGAACCATC 59.396 52.381 0.11 0.00 42.41 3.51
684 825 1.064758 ACTGTGTGTGGTGTGAACCAT 60.065 47.619 0.11 0.00 42.41 3.55
685 826 0.326595 ACTGTGTGTGGTGTGAACCA 59.673 50.000 0.00 0.00 37.46 3.67
686 827 0.732571 CACTGTGTGTGGTGTGAACC 59.267 55.000 0.00 0.00 42.68 3.62
740 885 3.084579 CGCTTCGACATGCACCTC 58.915 61.111 0.00 0.00 0.00 3.85
768 917 0.107831 TGCGCTTGTTGTTAGGAGGT 59.892 50.000 9.73 0.00 0.00 3.85
778 927 0.179113 CACCAAGGTTTGCGCTTGTT 60.179 50.000 9.73 0.00 0.00 2.83
1154 1304 5.165911 GCGGAATAAGCCTAGGTAAAAAC 57.834 43.478 11.31 0.00 0.00 2.43
1170 1320 3.541713 GAGAGGAGGCGGCGGAAT 61.542 66.667 9.78 0.00 0.00 3.01
1202 1352 1.516161 CATGTCCATCGCCGATTCAT 58.484 50.000 0.00 0.13 0.00 2.57
1249 1419 4.904251 ACTGACTGAGGGCACTGAATATAT 59.096 41.667 0.00 0.00 0.00 0.86
1250 1420 4.100035 CACTGACTGAGGGCACTGAATATA 59.900 45.833 0.00 0.00 0.00 0.86
1263 1433 2.425312 ACTCTATTCGCCACTGACTGAG 59.575 50.000 0.00 0.00 0.00 3.35
1266 1436 1.134965 GCACTCTATTCGCCACTGACT 60.135 52.381 0.00 0.00 0.00 3.41
1282 1452 3.782443 GTCCCGAATCCCCGCACT 61.782 66.667 0.00 0.00 0.00 4.40
1543 1713 0.932399 CGGTTATTTACGAAGCGGGG 59.068 55.000 0.00 0.00 42.48 5.73
1564 1734 0.445829 TGTTGCACACACACACTTCG 59.554 50.000 0.00 0.00 0.00 3.79
1568 1738 3.311080 CACTGTTGCACACACACAC 57.689 52.632 0.00 0.00 0.00 3.82
1583 1753 1.770658 TGAGCCCTATAGCATTGCACT 59.229 47.619 11.91 0.00 34.23 4.40
1602 1772 2.224402 GGAAGGGGCTAGATTGCTAGTG 60.224 54.545 0.00 0.00 44.84 2.74
1684 1877 2.342279 GTACTGCGTGCCTGTCCA 59.658 61.111 0.00 0.00 0.00 4.02
1690 1883 1.014352 CCATAAAGGTACTGCGTGCC 58.986 55.000 7.52 7.52 40.86 5.01
1698 1891 9.350951 ACTATTTAAGCATTCCCATAAAGGTAC 57.649 33.333 0.00 0.00 34.66 3.34
1745 1941 2.474526 CGTTCGCAAGCCTAACATTCTG 60.475 50.000 5.97 0.00 37.18 3.02
1746 1942 1.732259 CGTTCGCAAGCCTAACATTCT 59.268 47.619 5.97 0.00 37.18 2.40
1747 1943 1.730064 TCGTTCGCAAGCCTAACATTC 59.270 47.619 5.97 0.00 37.18 2.67
1748 1944 1.803334 TCGTTCGCAAGCCTAACATT 58.197 45.000 5.97 0.00 37.18 2.71
1807 2003 5.964958 TTCCACTTCAAATAAGCTTCAGG 57.035 39.130 0.00 0.00 0.00 3.86
1819 2015 4.826733 TCTTAGCTGCAATTTCCACTTCAA 59.173 37.500 1.02 0.00 0.00 2.69
1825 2021 4.260985 TCGAATCTTAGCTGCAATTTCCA 58.739 39.130 1.02 0.00 0.00 3.53
1855 2051 8.491134 TGGTTGATTTGCTACTATACCAACTAT 58.509 33.333 0.00 0.00 34.71 2.12
1882 2105 6.509523 TTTACCTTCCTGTATCCCCTTATG 57.490 41.667 0.00 0.00 0.00 1.90
1943 2166 3.835395 AGTTATATGAGTAGCTGCCTCCC 59.165 47.826 11.42 0.00 0.00 4.30
2035 2259 8.802267 AGCCTTATCTTACTGCTAGAATTAGAG 58.198 37.037 0.00 0.00 0.00 2.43
2110 2334 6.040054 CCATACTTTGATGCATGGAAAGATGA 59.960 38.462 24.72 14.46 40.37 2.92
2119 2343 4.751060 AGCAAACCATACTTTGATGCATG 58.249 39.130 2.46 0.00 33.61 4.06
2187 2415 0.838122 AGGCACAACTAGGAGCAGGT 60.838 55.000 0.00 0.00 0.00 4.00
2222 2450 9.872757 ATCTTGTATTTTGTTACAACTAACACG 57.127 29.630 0.00 0.88 41.64 4.49
2269 2497 0.698238 CCCTCCACATGAACCCTGAA 59.302 55.000 0.00 0.00 0.00 3.02
2273 2501 2.422945 GGTATTCCCTCCACATGAACCC 60.423 54.545 0.00 0.00 0.00 4.11
2324 2552 3.815401 AGTTGTGTTATGGTGTTCAGAGC 59.185 43.478 0.00 0.00 0.00 4.09
2480 2708 0.107456 CTATTCCACATCCAGCGCCT 59.893 55.000 2.29 0.00 0.00 5.52
2483 2711 2.620251 TTCCTATTCCACATCCAGCG 57.380 50.000 0.00 0.00 0.00 5.18
2507 2735 3.552068 CCTTTCCAAAACCGTAGCCAAAG 60.552 47.826 0.00 0.00 0.00 2.77
2510 2738 1.611519 CCTTTCCAAAACCGTAGCCA 58.388 50.000 0.00 0.00 0.00 4.75
2516 2744 1.337728 GCAATCCCCTTTCCAAAACCG 60.338 52.381 0.00 0.00 0.00 4.44
2531 2759 3.381045 TCCGTTCTCGTCATATGCAATC 58.619 45.455 0.00 0.00 35.01 2.67
2589 2817 1.772836 TACTCGTAAGGAAGGCTCCC 58.227 55.000 0.00 0.00 43.64 4.30
2603 2831 3.257393 AGAATGAGTTGCTGCTTACTCG 58.743 45.455 21.63 0.00 42.88 4.18
2614 2842 8.535592 CGATAGTACAAAGCTTAGAATGAGTTG 58.464 37.037 0.00 0.00 0.00 3.16
2621 2849 7.661127 TTTTGCGATAGTACAAAGCTTAGAA 57.339 32.000 0.00 0.00 37.11 2.10
2670 2899 0.448990 GATGCAAGCATGTCGAGCAA 59.551 50.000 12.94 0.00 38.85 3.91
2685 2914 2.988839 AAGCCCCCTCTGTGGATGC 61.989 63.158 0.00 0.00 38.35 3.91
2743 2972 3.899052 ATGAATGAACCAGCCAATTGG 57.101 42.857 20.81 20.81 44.09 3.16
2922 3217 1.112113 ATACGCCTCCACTTGTCGAT 58.888 50.000 0.00 0.00 0.00 3.59
2939 3234 2.190161 GTGTGATGTTCGCGCTACATA 58.810 47.619 21.32 8.29 36.41 2.29
2946 3241 0.179217 CATGTGGTGTGATGTTCGCG 60.179 55.000 0.00 0.00 0.00 5.87
2955 3250 2.426738 ACCTGTTTGTTCATGTGGTGTG 59.573 45.455 0.00 0.00 0.00 3.82
2956 3251 2.733956 ACCTGTTTGTTCATGTGGTGT 58.266 42.857 0.00 0.00 0.00 4.16
2957 3252 3.799281 AACCTGTTTGTTCATGTGGTG 57.201 42.857 0.00 0.00 0.00 4.17
2958 3253 4.532834 ACTAACCTGTTTGTTCATGTGGT 58.467 39.130 0.00 0.00 0.00 4.16
2959 3254 6.817765 ATACTAACCTGTTTGTTCATGTGG 57.182 37.500 2.65 0.00 31.51 4.17
3011 3312 2.045143 GAGGAGGTCGTCTCGGGT 60.045 66.667 0.00 0.00 43.34 5.28
3014 3315 0.882474 ACAAAGAGGAGGTCGTCTCG 59.118 55.000 2.79 1.23 43.34 4.04
3017 3318 1.887198 TCAGACAAAGAGGAGGTCGTC 59.113 52.381 0.00 0.00 36.68 4.20
3028 3329 3.653344 TCAGATGGAACGTCAGACAAAG 58.347 45.455 0.41 0.00 0.00 2.77
3029 3330 3.744238 TCAGATGGAACGTCAGACAAA 57.256 42.857 0.41 0.00 0.00 2.83
3159 3460 3.642503 AATTCCGGTGGTGCGGGA 61.643 61.111 0.00 0.00 43.68 5.14
3180 3485 4.409218 GTACCGACAGCGACGCCA 62.409 66.667 17.79 0.00 40.82 5.69
3197 3502 5.569441 CAGACGAACAATATATGCTACCGAG 59.431 44.000 0.00 0.00 0.00 4.63
3198 3503 5.009310 ACAGACGAACAATATATGCTACCGA 59.991 40.000 0.00 0.00 0.00 4.69
3199 3504 5.220381 ACAGACGAACAATATATGCTACCG 58.780 41.667 0.00 0.00 0.00 4.02
3200 3505 7.591165 TCTACAGACGAACAATATATGCTACC 58.409 38.462 0.00 0.00 0.00 3.18
3201 3506 9.627395 ATTCTACAGACGAACAATATATGCTAC 57.373 33.333 0.00 0.00 0.00 3.58
3202 3507 9.841880 GATTCTACAGACGAACAATATATGCTA 57.158 33.333 0.00 0.00 0.00 3.49
3203 3508 7.539022 CGATTCTACAGACGAACAATATATGCT 59.461 37.037 0.00 0.00 0.00 3.79
3273 3579 4.755123 ACGACACGGAGAAAGATTTGATTT 59.245 37.500 0.00 0.00 0.00 2.17
3292 3598 2.268298 ACAGACGGCATGATTAACGAC 58.732 47.619 0.00 0.00 0.00 4.34
3300 3606 6.038161 CAGGAAATTAAATACAGACGGCATGA 59.962 38.462 0.00 0.00 0.00 3.07
3305 3611 9.326413 ACTAATCAGGAAATTAAATACAGACGG 57.674 33.333 0.00 0.00 0.00 4.79
3319 3625 6.154445 GTGACGTTGACTACTAATCAGGAAA 58.846 40.000 0.00 0.00 0.00 3.13
3366 3672 3.350219 TGATGCCCCAGAAAGAAGTAC 57.650 47.619 0.00 0.00 0.00 2.73
3414 3720 3.526931 TTGGAGTATGCACTACTGCTC 57.473 47.619 20.10 10.53 46.07 4.26
3424 3730 1.739067 AGGAAGCGTTTGGAGTATGC 58.261 50.000 0.00 0.00 0.00 3.14
3430 3736 0.675083 TGACGTAGGAAGCGTTTGGA 59.325 50.000 0.00 0.00 43.04 3.53
3482 3797 2.480416 GGAGACAGCTGACACCGATAAG 60.480 54.545 23.35 0.00 0.00 1.73
3614 3930 0.590195 GAACATCAGATGCGGATGCC 59.410 55.000 10.59 0.00 44.68 4.40
3615 3931 1.590932 AGAACATCAGATGCGGATGC 58.409 50.000 10.59 0.00 44.68 3.91
3616 3932 4.375272 ACTAAGAACATCAGATGCGGATG 58.625 43.478 10.59 6.10 45.93 3.51
3617 3933 4.502259 GGACTAAGAACATCAGATGCGGAT 60.502 45.833 10.59 0.00 0.00 4.18
3618 3934 3.181475 GGACTAAGAACATCAGATGCGGA 60.181 47.826 10.59 0.00 0.00 5.54
3619 3935 3.126831 GGACTAAGAACATCAGATGCGG 58.873 50.000 10.59 0.00 0.00 5.69
3620 3936 3.785486 TGGACTAAGAACATCAGATGCG 58.215 45.455 10.59 0.00 0.00 4.73
3621 3937 4.125703 CCTGGACTAAGAACATCAGATGC 58.874 47.826 10.59 0.00 0.00 3.91
3622 3938 5.604758 TCCTGGACTAAGAACATCAGATG 57.395 43.478 9.03 9.03 0.00 2.90
3623 3939 5.901853 TGATCCTGGACTAAGAACATCAGAT 59.098 40.000 0.00 0.00 0.00 2.90
3624 3940 5.272402 TGATCCTGGACTAAGAACATCAGA 58.728 41.667 0.00 0.00 0.00 3.27
3625 3941 5.453057 CCTGATCCTGGACTAAGAACATCAG 60.453 48.000 0.00 4.88 37.04 2.90
3626 3942 4.406972 CCTGATCCTGGACTAAGAACATCA 59.593 45.833 0.00 0.00 0.00 3.07
3627 3943 4.202305 CCCTGATCCTGGACTAAGAACATC 60.202 50.000 0.00 0.00 0.00 3.06
3628 3944 3.713764 CCCTGATCCTGGACTAAGAACAT 59.286 47.826 0.00 0.00 0.00 2.71
3629 3945 3.107601 CCCTGATCCTGGACTAAGAACA 58.892 50.000 0.00 0.00 0.00 3.18
3630 3946 3.108376 ACCCTGATCCTGGACTAAGAAC 58.892 50.000 0.00 0.00 0.00 3.01
3631 3947 3.107601 CACCCTGATCCTGGACTAAGAA 58.892 50.000 0.00 0.00 0.00 2.52
3632 3948 2.314852 TCACCCTGATCCTGGACTAAGA 59.685 50.000 0.00 0.00 0.00 2.10
3633 3949 2.752030 TCACCCTGATCCTGGACTAAG 58.248 52.381 0.00 0.00 0.00 2.18
3634 3950 2.838202 GTTCACCCTGATCCTGGACTAA 59.162 50.000 0.00 0.00 0.00 2.24
3635 3951 2.225522 TGTTCACCCTGATCCTGGACTA 60.226 50.000 0.00 0.00 0.00 2.59
3636 3952 1.280457 GTTCACCCTGATCCTGGACT 58.720 55.000 0.00 0.00 0.00 3.85
3637 3953 0.984230 TGTTCACCCTGATCCTGGAC 59.016 55.000 0.00 0.00 0.00 4.02
3638 3954 1.630369 CTTGTTCACCCTGATCCTGGA 59.370 52.381 0.00 0.00 0.00 3.86
3639 3955 1.630369 TCTTGTTCACCCTGATCCTGG 59.370 52.381 0.00 0.00 0.00 4.45
3640 3956 2.355513 CCTCTTGTTCACCCTGATCCTG 60.356 54.545 0.00 0.00 0.00 3.86
3641 3957 1.912043 CCTCTTGTTCACCCTGATCCT 59.088 52.381 0.00 0.00 0.00 3.24
3642 3958 1.680249 GCCTCTTGTTCACCCTGATCC 60.680 57.143 0.00 0.00 0.00 3.36
3643 3959 1.280421 AGCCTCTTGTTCACCCTGATC 59.720 52.381 0.00 0.00 0.00 2.92
3644 3960 1.366319 AGCCTCTTGTTCACCCTGAT 58.634 50.000 0.00 0.00 0.00 2.90
3645 3961 2.024176 TAGCCTCTTGTTCACCCTGA 57.976 50.000 0.00 0.00 0.00 3.86
3646 3962 2.859165 TTAGCCTCTTGTTCACCCTG 57.141 50.000 0.00 0.00 0.00 4.45
3647 3963 4.388577 AATTTAGCCTCTTGTTCACCCT 57.611 40.909 0.00 0.00 0.00 4.34
3648 3964 4.379499 CGAAATTTAGCCTCTTGTTCACCC 60.379 45.833 0.00 0.00 0.00 4.61
3649 3965 4.215613 ACGAAATTTAGCCTCTTGTTCACC 59.784 41.667 0.00 0.00 0.00 4.02
3650 3966 5.147162 CACGAAATTTAGCCTCTTGTTCAC 58.853 41.667 0.00 0.00 0.00 3.18
3651 3967 4.819630 ACACGAAATTTAGCCTCTTGTTCA 59.180 37.500 0.00 0.00 0.00 3.18
3652 3968 5.358298 ACACGAAATTTAGCCTCTTGTTC 57.642 39.130 0.00 0.00 0.00 3.18
3653 3969 5.767816 AACACGAAATTTAGCCTCTTGTT 57.232 34.783 0.00 0.00 29.60 2.83
3654 3970 5.767816 AAACACGAAATTTAGCCTCTTGT 57.232 34.783 0.00 0.00 0.00 3.16
3655 3971 6.142320 GTCAAAACACGAAATTTAGCCTCTTG 59.858 38.462 0.00 0.00 0.00 3.02
3656 3972 6.206498 GTCAAAACACGAAATTTAGCCTCTT 58.794 36.000 0.00 0.00 0.00 2.85
3657 3973 5.278315 GGTCAAAACACGAAATTTAGCCTCT 60.278 40.000 0.00 0.00 0.00 3.69
3658 3974 4.915667 GGTCAAAACACGAAATTTAGCCTC 59.084 41.667 0.00 0.00 0.00 4.70
3659 3975 4.261867 GGGTCAAAACACGAAATTTAGCCT 60.262 41.667 0.00 0.00 0.00 4.58
3660 3976 3.985279 GGGTCAAAACACGAAATTTAGCC 59.015 43.478 0.00 0.00 0.00 3.93
3661 3977 4.866921 AGGGTCAAAACACGAAATTTAGC 58.133 39.130 0.00 0.00 32.44 3.09
3662 3978 6.735130 AGAAGGGTCAAAACACGAAATTTAG 58.265 36.000 0.00 0.00 32.44 1.85
3663 3979 6.319152 TGAGAAGGGTCAAAACACGAAATTTA 59.681 34.615 0.00 0.00 32.44 1.40
3664 3980 5.126384 TGAGAAGGGTCAAAACACGAAATTT 59.874 36.000 0.00 0.00 32.44 1.82
3665 3981 4.642885 TGAGAAGGGTCAAAACACGAAATT 59.357 37.500 0.00 0.00 32.44 1.82
3666 3982 4.204012 TGAGAAGGGTCAAAACACGAAAT 58.796 39.130 0.00 0.00 32.44 2.17
3667 3983 3.611970 TGAGAAGGGTCAAAACACGAAA 58.388 40.909 0.00 0.00 32.44 3.46
3668 3984 3.269538 TGAGAAGGGTCAAAACACGAA 57.730 42.857 0.00 0.00 32.44 3.85
3669 3985 2.992124 TGAGAAGGGTCAAAACACGA 57.008 45.000 0.00 0.00 32.44 4.35
3670 3986 3.127895 TGTTTGAGAAGGGTCAAAACACG 59.872 43.478 0.76 0.00 45.65 4.49
3671 3987 4.421058 GTGTTTGAGAAGGGTCAAAACAC 58.579 43.478 12.32 12.32 45.65 3.32
3672 3988 4.340617 AGTGTTTGAGAAGGGTCAAAACA 58.659 39.130 0.76 0.00 45.65 2.83
3673 3989 4.398044 TGAGTGTTTGAGAAGGGTCAAAAC 59.602 41.667 0.76 3.20 45.65 2.43
3674 3990 4.594970 TGAGTGTTTGAGAAGGGTCAAAA 58.405 39.130 0.76 0.00 45.65 2.44
3675 3991 4.229304 TGAGTGTTTGAGAAGGGTCAAA 57.771 40.909 0.00 0.00 42.79 2.69
3676 3992 3.924114 TGAGTGTTTGAGAAGGGTCAA 57.076 42.857 0.00 0.00 34.56 3.18
3677 3993 3.924114 TTGAGTGTTTGAGAAGGGTCA 57.076 42.857 0.00 0.00 0.00 4.02
3678 3994 4.389374 TGATTGAGTGTTTGAGAAGGGTC 58.611 43.478 0.00 0.00 0.00 4.46
3679 3995 4.141390 ACTGATTGAGTGTTTGAGAAGGGT 60.141 41.667 0.00 0.00 31.75 4.34
3680 3996 4.214971 CACTGATTGAGTGTTTGAGAAGGG 59.785 45.833 0.00 0.00 46.30 3.95
3681 3997 5.354054 CACTGATTGAGTGTTTGAGAAGG 57.646 43.478 0.00 0.00 46.30 3.46
3692 4008 4.202503 ACTGGGTTGATTCACTGATTGAGT 60.203 41.667 0.00 0.00 34.94 3.41
3693 4009 4.330250 ACTGGGTTGATTCACTGATTGAG 58.670 43.478 0.00 0.00 34.94 3.02
3694 4010 4.371624 ACTGGGTTGATTCACTGATTGA 57.628 40.909 0.00 0.00 0.00 2.57
3695 4011 5.458041 AAACTGGGTTGATTCACTGATTG 57.542 39.130 0.00 0.00 0.00 2.67
3696 4012 6.484364 AAAAACTGGGTTGATTCACTGATT 57.516 33.333 0.00 0.00 0.00 2.57
3723 4039 8.536175 GGTAGGAAAATGGTCCAATATCAAAAA 58.464 33.333 0.00 0.00 40.48 1.94
3724 4040 7.147983 CGGTAGGAAAATGGTCCAATATCAAAA 60.148 37.037 0.00 0.00 40.48 2.44
3725 4041 6.320164 CGGTAGGAAAATGGTCCAATATCAAA 59.680 38.462 0.00 0.00 40.48 2.69
3726 4042 5.825679 CGGTAGGAAAATGGTCCAATATCAA 59.174 40.000 0.00 0.00 40.48 2.57
3727 4043 5.373222 CGGTAGGAAAATGGTCCAATATCA 58.627 41.667 0.00 0.00 40.48 2.15
3728 4044 4.215613 GCGGTAGGAAAATGGTCCAATATC 59.784 45.833 0.00 0.00 40.48 1.63
3729 4045 4.142038 GCGGTAGGAAAATGGTCCAATAT 58.858 43.478 0.00 0.00 40.48 1.28
3730 4046 3.547746 GCGGTAGGAAAATGGTCCAATA 58.452 45.455 0.00 0.00 40.48 1.90
3731 4047 2.375146 GCGGTAGGAAAATGGTCCAAT 58.625 47.619 0.00 0.00 40.48 3.16
3732 4048 1.614850 GGCGGTAGGAAAATGGTCCAA 60.615 52.381 0.00 0.00 40.48 3.53
3733 4049 0.034863 GGCGGTAGGAAAATGGTCCA 60.035 55.000 0.00 0.00 40.48 4.02
3734 4050 1.093496 CGGCGGTAGGAAAATGGTCC 61.093 60.000 0.00 0.00 38.03 4.46
3735 4051 1.093496 CCGGCGGTAGGAAAATGGTC 61.093 60.000 19.97 0.00 0.00 4.02
3736 4052 1.078001 CCGGCGGTAGGAAAATGGT 60.078 57.895 19.97 0.00 0.00 3.55
3737 4053 1.822186 CCCGGCGGTAGGAAAATGG 60.822 63.158 26.32 0.50 0.00 3.16
3738 4054 1.822186 CCCCGGCGGTAGGAAAATG 60.822 63.158 26.32 5.57 0.00 2.32
3739 4055 1.350310 ATCCCCGGCGGTAGGAAAAT 61.350 55.000 24.56 8.71 32.26 1.82
3740 4056 1.974973 GATCCCCGGCGGTAGGAAAA 61.975 60.000 24.56 5.87 32.26 2.29
3741 4057 2.365901 ATCCCCGGCGGTAGGAAA 60.366 61.111 24.56 6.55 32.26 3.13
3742 4058 2.841044 GATCCCCGGCGGTAGGAA 60.841 66.667 24.56 10.88 32.26 3.36
3743 4059 3.804638 GAGATCCCCGGCGGTAGGA 62.805 68.421 26.32 24.65 0.00 2.94
3744 4060 3.303928 GAGATCCCCGGCGGTAGG 61.304 72.222 26.32 19.92 0.00 3.18
3745 4061 3.671411 CGAGATCCCCGGCGGTAG 61.671 72.222 26.32 16.14 0.00 3.18
3752 4068 3.671411 CTACCGCCGAGATCCCCG 61.671 72.222 0.00 0.00 0.00 5.73
3753 4069 3.303928 CCTACCGCCGAGATCCCC 61.304 72.222 0.00 0.00 0.00 4.81
3754 4070 3.303928 CCCTACCGCCGAGATCCC 61.304 72.222 0.00 0.00 0.00 3.85
3755 4071 2.132352 AACCCTACCGCCGAGATCC 61.132 63.158 0.00 0.00 0.00 3.36
3756 4072 1.067582 CAACCCTACCGCCGAGATC 59.932 63.158 0.00 0.00 0.00 2.75
3757 4073 3.090219 GCAACCCTACCGCCGAGAT 62.090 63.158 0.00 0.00 0.00 2.75
3758 4074 3.766691 GCAACCCTACCGCCGAGA 61.767 66.667 0.00 0.00 0.00 4.04
3761 4077 4.132441 TACGCAACCCTACCGCCG 62.132 66.667 0.00 0.00 0.00 6.46
3762 4078 2.202837 CTACGCAACCCTACCGCC 60.203 66.667 0.00 0.00 0.00 6.13
3763 4079 2.889018 GCTACGCAACCCTACCGC 60.889 66.667 0.00 0.00 0.00 5.68
3764 4080 1.386525 TAGGCTACGCAACCCTACCG 61.387 60.000 0.00 0.00 0.00 4.02
3765 4081 0.103755 GTAGGCTACGCAACCCTACC 59.896 60.000 9.23 0.00 43.31 3.18
3766 4082 0.103755 GGTAGGCTACGCAACCCTAC 59.896 60.000 17.91 11.56 46.60 3.18
3767 4083 1.044790 GGGTAGGCTACGCAACCCTA 61.045 60.000 30.09 0.00 46.27 3.53
3768 4084 2.364780 GGGTAGGCTACGCAACCCT 61.365 63.158 30.09 0.00 46.27 4.34
3769 4085 2.188731 GGGTAGGCTACGCAACCC 59.811 66.667 30.09 19.74 44.73 4.11
3770 4086 1.143401 GAGGGTAGGCTACGCAACC 59.857 63.158 34.21 22.30 43.32 3.77
3771 4087 0.179108 CTGAGGGTAGGCTACGCAAC 60.179 60.000 34.21 27.55 43.32 4.17
3772 4088 0.323999 TCTGAGGGTAGGCTACGCAA 60.324 55.000 34.21 23.75 43.32 4.85
3773 4089 0.323999 TTCTGAGGGTAGGCTACGCA 60.324 55.000 34.21 22.56 43.32 5.24
3774 4090 1.000052 GATTCTGAGGGTAGGCTACGC 60.000 57.143 28.51 28.51 41.44 4.42
3775 4091 2.588620 AGATTCTGAGGGTAGGCTACG 58.411 52.381 17.91 4.51 0.00 3.51
3776 4092 4.443598 CCAAAGATTCTGAGGGTAGGCTAC 60.444 50.000 16.40 16.40 0.00 3.58
3777 4093 3.711704 CCAAAGATTCTGAGGGTAGGCTA 59.288 47.826 0.00 0.00 0.00 3.93
3778 4094 2.507471 CCAAAGATTCTGAGGGTAGGCT 59.493 50.000 0.00 0.00 0.00 4.58
3779 4095 2.924421 CCAAAGATTCTGAGGGTAGGC 58.076 52.381 0.00 0.00 0.00 3.93
3780 4096 2.743183 CGCCAAAGATTCTGAGGGTAGG 60.743 54.545 6.75 0.00 0.00 3.18
3781 4097 2.555199 CGCCAAAGATTCTGAGGGTAG 58.445 52.381 6.75 0.00 0.00 3.18
3782 4098 1.209504 CCGCCAAAGATTCTGAGGGTA 59.790 52.381 6.75 0.00 0.00 3.69
3783 4099 0.035056 CCGCCAAAGATTCTGAGGGT 60.035 55.000 6.75 0.00 0.00 4.34
3784 4100 0.035056 ACCGCCAAAGATTCTGAGGG 60.035 55.000 6.75 1.65 0.00 4.30
3785 4101 2.168521 TCTACCGCCAAAGATTCTGAGG 59.831 50.000 1.28 1.28 0.00 3.86
3786 4102 3.118956 ACTCTACCGCCAAAGATTCTGAG 60.119 47.826 0.00 0.00 0.00 3.35
3787 4103 2.832129 ACTCTACCGCCAAAGATTCTGA 59.168 45.455 0.00 0.00 0.00 3.27
3788 4104 3.252974 ACTCTACCGCCAAAGATTCTG 57.747 47.619 0.00 0.00 0.00 3.02
3789 4105 4.677250 CGTTACTCTACCGCCAAAGATTCT 60.677 45.833 0.00 0.00 0.00 2.40
3790 4106 3.550678 CGTTACTCTACCGCCAAAGATTC 59.449 47.826 0.00 0.00 0.00 2.52
3791 4107 3.518590 CGTTACTCTACCGCCAAAGATT 58.481 45.455 0.00 0.00 0.00 2.40
3792 4108 2.159142 CCGTTACTCTACCGCCAAAGAT 60.159 50.000 0.00 0.00 0.00 2.40
3793 4109 1.203052 CCGTTACTCTACCGCCAAAGA 59.797 52.381 0.00 0.00 0.00 2.52
3794 4110 1.067354 ACCGTTACTCTACCGCCAAAG 60.067 52.381 0.00 0.00 0.00 2.77
3795 4111 0.968405 ACCGTTACTCTACCGCCAAA 59.032 50.000 0.00 0.00 0.00 3.28
3796 4112 1.745087 CTACCGTTACTCTACCGCCAA 59.255 52.381 0.00 0.00 0.00 4.52
3797 4113 1.382522 CTACCGTTACTCTACCGCCA 58.617 55.000 0.00 0.00 0.00 5.69
3798 4114 0.029967 GCTACCGTTACTCTACCGCC 59.970 60.000 0.00 0.00 0.00 6.13
3799 4115 0.029967 GGCTACCGTTACTCTACCGC 59.970 60.000 0.00 0.00 0.00 5.68
3800 4116 0.305922 CGGCTACCGTTACTCTACCG 59.694 60.000 0.00 0.00 42.73 4.02
3812 4128 1.000052 GTTAGAGAGATGGCGGCTACC 60.000 57.143 11.43 0.00 0.00 3.18
3813 4129 1.681793 TGTTAGAGAGATGGCGGCTAC 59.318 52.381 11.43 4.08 0.00 3.58
3814 4130 2.067365 TGTTAGAGAGATGGCGGCTA 57.933 50.000 11.43 0.00 0.00 3.93
3815 4131 1.342819 GATGTTAGAGAGATGGCGGCT 59.657 52.381 11.43 0.00 0.00 5.52
3816 4132 1.606737 GGATGTTAGAGAGATGGCGGC 60.607 57.143 0.00 0.00 0.00 6.53
3817 4133 1.001406 GGGATGTTAGAGAGATGGCGG 59.999 57.143 0.00 0.00 0.00 6.13
3818 4134 1.688735 TGGGATGTTAGAGAGATGGCG 59.311 52.381 0.00 0.00 0.00 5.69
3819 4135 3.118261 TGTTGGGATGTTAGAGAGATGGC 60.118 47.826 0.00 0.00 0.00 4.40
3820 4136 4.163078 AGTGTTGGGATGTTAGAGAGATGG 59.837 45.833 0.00 0.00 0.00 3.51
3821 4137 5.105187 TCAGTGTTGGGATGTTAGAGAGATG 60.105 44.000 0.00 0.00 0.00 2.90
3822 4138 5.026121 TCAGTGTTGGGATGTTAGAGAGAT 58.974 41.667 0.00 0.00 0.00 2.75
3823 4139 4.220821 GTCAGTGTTGGGATGTTAGAGAGA 59.779 45.833 0.00 0.00 0.00 3.10
3824 4140 4.021104 TGTCAGTGTTGGGATGTTAGAGAG 60.021 45.833 0.00 0.00 0.00 3.20
3825 4141 3.901222 TGTCAGTGTTGGGATGTTAGAGA 59.099 43.478 0.00 0.00 0.00 3.10
3826 4142 4.271696 TGTCAGTGTTGGGATGTTAGAG 57.728 45.455 0.00 0.00 0.00 2.43
3827 4143 4.565444 CCATGTCAGTGTTGGGATGTTAGA 60.565 45.833 0.00 0.00 0.00 2.10
3828 4144 3.691118 CCATGTCAGTGTTGGGATGTTAG 59.309 47.826 0.00 0.00 0.00 2.34
3829 4145 3.684908 CCATGTCAGTGTTGGGATGTTA 58.315 45.455 0.00 0.00 0.00 2.41
3830 4146 2.517959 CCATGTCAGTGTTGGGATGTT 58.482 47.619 0.00 0.00 0.00 2.71
3831 4147 1.887956 GCCATGTCAGTGTTGGGATGT 60.888 52.381 10.21 0.00 0.00 3.06
3832 4148 0.813184 GCCATGTCAGTGTTGGGATG 59.187 55.000 10.21 0.00 0.00 3.51
3833 4149 0.405198 TGCCATGTCAGTGTTGGGAT 59.595 50.000 10.21 0.00 0.00 3.85
3834 4150 0.250858 CTGCCATGTCAGTGTTGGGA 60.251 55.000 0.00 7.33 0.00 4.37
3835 4151 0.250858 TCTGCCATGTCAGTGTTGGG 60.251 55.000 3.30 1.49 35.63 4.12
3836 4152 0.877071 GTCTGCCATGTCAGTGTTGG 59.123 55.000 3.30 5.49 35.63 3.77
3837 4153 1.888215 AGTCTGCCATGTCAGTGTTG 58.112 50.000 3.30 0.00 35.63 3.33
3838 4154 2.498167 GAAGTCTGCCATGTCAGTGTT 58.502 47.619 3.30 0.00 35.63 3.32
3839 4155 1.271054 GGAAGTCTGCCATGTCAGTGT 60.271 52.381 3.30 0.00 35.63 3.55
3840 4156 1.002888 AGGAAGTCTGCCATGTCAGTG 59.997 52.381 3.30 0.00 35.63 3.66
3841 4157 1.356124 AGGAAGTCTGCCATGTCAGT 58.644 50.000 3.30 0.00 35.63 3.41
3842 4158 2.419297 GGTAGGAAGTCTGCCATGTCAG 60.419 54.545 0.00 0.00 46.05 3.51
3843 4159 1.555075 GGTAGGAAGTCTGCCATGTCA 59.445 52.381 0.00 0.00 46.05 3.58
3844 4160 1.471676 CGGTAGGAAGTCTGCCATGTC 60.472 57.143 0.00 0.00 46.99 3.06
3845 4161 0.537188 CGGTAGGAAGTCTGCCATGT 59.463 55.000 0.00 0.00 46.99 3.21
3846 4162 0.811616 GCGGTAGGAAGTCTGCCATG 60.812 60.000 0.00 0.00 46.99 3.66
3847 4163 0.978146 AGCGGTAGGAAGTCTGCCAT 60.978 55.000 0.00 0.00 46.99 4.40
3848 4164 1.609501 AGCGGTAGGAAGTCTGCCA 60.610 57.895 0.00 0.00 46.99 4.92
3849 4165 1.153549 CAGCGGTAGGAAGTCTGCC 60.154 63.158 0.00 0.00 43.74 4.85
3850 4166 1.153549 CCAGCGGTAGGAAGTCTGC 60.154 63.158 0.00 0.00 36.34 4.26
3851 4167 1.153549 GCCAGCGGTAGGAAGTCTG 60.154 63.158 7.19 0.00 0.00 3.51
3852 4168 2.711922 CGCCAGCGGTAGGAAGTCT 61.712 63.158 3.61 0.00 35.56 3.24
3853 4169 2.202756 CGCCAGCGGTAGGAAGTC 60.203 66.667 3.61 0.00 35.56 3.01
3869 4185 3.861797 ATCCTACCGCCAAGGCCG 61.862 66.667 5.34 1.30 46.52 6.13
3870 4186 2.203209 CATCCTACCGCCAAGGCC 60.203 66.667 5.34 0.00 46.52 5.19
3871 4187 1.819632 CACATCCTACCGCCAAGGC 60.820 63.158 0.00 0.00 46.52 4.35
3873 4189 0.676466 TTGCACATCCTACCGCCAAG 60.676 55.000 0.00 0.00 0.00 3.61
3874 4190 0.958382 GTTGCACATCCTACCGCCAA 60.958 55.000 0.00 0.00 0.00 4.52
3875 4191 1.376683 GTTGCACATCCTACCGCCA 60.377 57.895 0.00 0.00 0.00 5.69
3876 4192 2.112815 GGTTGCACATCCTACCGCC 61.113 63.158 0.00 0.00 0.00 6.13
3877 4193 2.112815 GGGTTGCACATCCTACCGC 61.113 63.158 0.00 0.00 0.00 5.68
3878 4194 0.828022 TAGGGTTGCACATCCTACCG 59.172 55.000 4.39 0.00 32.46 4.02
3879 4195 2.327200 GTAGGGTTGCACATCCTACC 57.673 55.000 19.62 9.93 44.29 3.18
3881 4197 0.828022 CGGTAGGGTTGCACATCCTA 59.172 55.000 4.39 4.39 32.46 2.94
3882 4198 1.602237 CGGTAGGGTTGCACATCCT 59.398 57.895 6.06 6.06 34.85 3.24
3883 4199 2.112815 GCGGTAGGGTTGCACATCC 61.113 63.158 0.00 0.00 0.00 3.51
3884 4200 2.112815 GGCGGTAGGGTTGCACATC 61.113 63.158 0.00 0.00 0.00 3.06
3885 4201 2.045340 GGCGGTAGGGTTGCACAT 60.045 61.111 0.00 0.00 0.00 3.21
3886 4202 4.690719 CGGCGGTAGGGTTGCACA 62.691 66.667 0.00 0.00 0.00 4.57
3887 4203 4.382320 TCGGCGGTAGGGTTGCAC 62.382 66.667 7.21 0.00 0.00 4.57
3888 4204 4.077184 CTCGGCGGTAGGGTTGCA 62.077 66.667 7.21 0.00 0.00 4.08
3907 4223 1.893808 CACACCCTATCGCCATGGC 60.894 63.158 27.67 27.67 37.85 4.40
3908 4224 1.893808 GCACACCCTATCGCCATGG 60.894 63.158 7.63 7.63 0.00 3.66
3909 4225 0.747644 TTGCACACCCTATCGCCATG 60.748 55.000 0.00 0.00 0.00 3.66
3910 4226 0.748005 GTTGCACACCCTATCGCCAT 60.748 55.000 0.00 0.00 0.00 4.40
3911 4227 1.376683 GTTGCACACCCTATCGCCA 60.377 57.895 0.00 0.00 0.00 5.69
3912 4228 2.112815 GGTTGCACACCCTATCGCC 61.113 63.158 6.76 0.00 40.19 5.54
3913 4229 3.497879 GGTTGCACACCCTATCGC 58.502 61.111 6.76 0.00 40.19 4.58
3920 4236 0.958382 TTGCGATAGGGTTGCACACC 60.958 55.000 8.94 8.94 46.85 4.16
3921 4237 0.878416 TTTGCGATAGGGTTGCACAC 59.122 50.000 0.00 0.00 46.85 3.82
3922 4238 1.268352 GTTTTGCGATAGGGTTGCACA 59.732 47.619 0.00 0.00 46.85 4.57
3923 4239 1.268352 TGTTTTGCGATAGGGTTGCAC 59.732 47.619 0.00 0.00 46.85 4.57
3924 4240 1.610363 TGTTTTGCGATAGGGTTGCA 58.390 45.000 0.00 0.00 45.55 4.08
3925 4241 2.324860 GTTGTTTTGCGATAGGGTTGC 58.675 47.619 0.00 0.00 37.76 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.