Multiple sequence alignment - TraesCS3B01G437500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G437500 chr3B 100.000 5930 0 0 980 6909 676609759 676615688 0.000000e+00 10951.0
1 TraesCS3B01G437500 chr3B 100.000 724 0 0 1 724 676608780 676609503 0.000000e+00 1338.0
2 TraesCS3B01G437500 chr3D 94.789 4241 140 38 2264 6491 514263406 514267578 0.000000e+00 6532.0
3 TraesCS3B01G437500 chr3D 96.652 926 28 1 990 1912 514262123 514263048 0.000000e+00 1535.0
4 TraesCS3B01G437500 chr3D 93.171 410 17 5 6504 6909 514267562 514267964 5.970000e-165 592.0
5 TraesCS3B01G437500 chr3D 89.417 463 17 12 257 696 514261652 514262105 7.830000e-154 555.0
6 TraesCS3B01G437500 chr3D 95.760 283 10 2 1984 2265 514263047 514263328 8.170000e-124 455.0
7 TraesCS3B01G437500 chr3D 93.333 75 3 1 1911 1985 110398389 110398461 7.330000e-20 110.0
8 TraesCS3B01G437500 chr3D 88.764 89 5 5 1905 1988 61804525 61804613 3.410000e-18 104.0
9 TraesCS3B01G437500 chr3A 96.034 2219 56 18 3956 6163 649022787 649024984 0.000000e+00 3581.0
10 TraesCS3B01G437500 chr3A 95.191 1705 58 8 2264 3963 649020946 649022631 0.000000e+00 2673.0
11 TraesCS3B01G437500 chr3A 96.452 930 27 1 990 1913 649019655 649020584 0.000000e+00 1530.0
12 TraesCS3B01G437500 chr3A 92.421 409 15 10 6512 6909 649025437 649025840 2.800000e-158 569.0
13 TraesCS3B01G437500 chr3A 95.423 284 12 1 1982 2265 649020586 649020868 1.060000e-122 451.0
14 TraesCS3B01G437500 chr3A 85.360 444 18 18 255 673 649018863 649019284 3.850000e-112 416.0
15 TraesCS3B01G437500 chr3A 87.755 343 25 8 6162 6491 649025108 649025446 1.090000e-102 385.0
16 TraesCS3B01G437500 chr1D 93.590 78 5 0 1908 1985 433912680 433912603 4.380000e-22 117.0
17 TraesCS3B01G437500 chr1D 90.741 54 5 0 6364 6417 258339638 258339691 9.610000e-09 73.1
18 TraesCS3B01G437500 chr7D 92.308 78 4 1 1910 1985 177987450 177987527 7.330000e-20 110.0
19 TraesCS3B01G437500 chr7D 92.405 79 3 1 1908 1986 184573433 184573358 7.330000e-20 110.0
20 TraesCS3B01G437500 chr7A 94.444 72 2 2 1911 1982 424298703 424298772 7.330000e-20 110.0
21 TraesCS3B01G437500 chr5B 93.333 75 4 1 1911 1985 102640619 102640546 7.330000e-20 110.0
22 TraesCS3B01G437500 chr4D 92.308 78 3 1 1911 1988 15786198 15786272 2.640000e-19 108.0
23 TraesCS3B01G437500 chr6A 89.773 88 2 3 1903 1990 501479285 501479365 9.480000e-19 106.0
24 TraesCS3B01G437500 chr2B 96.226 53 2 0 6364 6416 134045504 134045452 3.430000e-13 87.9
25 TraesCS3B01G437500 chr2D 94.340 53 3 0 6364 6416 82181972 82181920 1.600000e-11 82.4
26 TraesCS3B01G437500 chrUn 92.593 54 2 2 6364 6416 75836608 75836556 7.430000e-10 76.8
27 TraesCS3B01G437500 chrUn 92.593 54 2 2 6364 6416 322507549 322507601 7.430000e-10 76.8
28 TraesCS3B01G437500 chr1A 95.745 47 2 0 6368 6414 390098964 390098918 7.430000e-10 76.8
29 TraesCS3B01G437500 chr7B 91.071 56 4 1 6364 6418 255075448 255075393 2.670000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G437500 chr3B 676608780 676615688 6908 False 6144.500000 10951 100.000000 1 6909 2 chr3B.!!$F1 6908
1 TraesCS3B01G437500 chr3D 514261652 514267964 6312 False 1933.800000 6532 93.957800 257 6909 5 chr3D.!!$F3 6652
2 TraesCS3B01G437500 chr3A 649018863 649025840 6977 False 1372.142857 3581 92.662286 255 6909 7 chr3A.!!$F1 6654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 121 0.041135 GAGGCGATCGACCGAGTAAG 60.041 60.000 19.53 0.00 0.00 2.34 F
356 378 0.601558 CCCGAGAAACACTCCGAGAA 59.398 55.000 1.33 0.00 42.18 2.87 F
1923 2285 0.032714 AAGTACTACCCCCTCCGTCC 60.033 60.000 0.00 0.00 0.00 4.79 F
1928 2290 0.105349 CTACCCCCTCCGTCCCATAA 60.105 60.000 0.00 0.00 0.00 1.90 F
1929 2291 0.569204 TACCCCCTCCGTCCCATAAT 59.431 55.000 0.00 0.00 0.00 1.28 F
1999 2361 1.002544 GGAGTAGCTGACTGTGCCTTT 59.997 52.381 0.00 0.00 39.06 3.11 F
2285 2727 1.005037 TGCTACTCTTGGGTGTGCG 60.005 57.895 0.00 0.00 0.00 5.34 F
3169 3614 1.028868 GGGCATCACCTCTTCACTGC 61.029 60.000 0.00 0.00 39.10 4.40 F
4210 4821 1.334869 GTGCAAAGGACACTCCACTTG 59.665 52.381 0.00 0.00 39.61 3.16 F
4791 5410 0.390340 ATCGACAGCGCTTGTGATGT 60.390 50.000 7.50 1.02 41.05 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1347 1703 0.031111 TCCACCTCTTGATCCGGGAT 60.031 55.000 9.85 9.85 0.00 3.85 R
1976 2338 0.174617 GCACAGTCAGCTACTCCCTC 59.825 60.000 0.00 0.00 35.76 4.30 R
3169 3614 0.383949 CAGTTCCCCAAACAACGTGG 59.616 55.000 0.00 0.00 40.56 4.94 R
3473 3920 4.041691 ACCACCAGTAACTTCTGCAGTATT 59.958 41.667 14.67 9.13 32.94 1.89 R
3857 4305 7.229506 ACTCCAGTTATGAGAACAAAAAGAAGG 59.770 37.037 0.00 0.00 33.95 3.46 R
3876 4324 8.147244 AGACACTAATGGTTAATTACTCCAGT 57.853 34.615 12.28 11.98 34.62 4.00 R
3887 4335 8.598916 TCACCAGATTTTAGACACTAATGGTTA 58.401 33.333 10.09 3.36 36.41 2.85 R
4285 4896 2.044123 AGCCAATAACTGTAGCCAGC 57.956 50.000 0.00 0.00 42.81 4.85 R
5807 6429 0.543277 CAGGCATTAGAGGAGGCACA 59.457 55.000 0.00 0.00 0.00 4.57 R
6593 7362 0.107831 TGCGCTTGTTGTTAGGAGGT 59.892 50.000 9.73 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.047613 CGTTAACTTAGATTTGGCGCC 57.952 47.619 22.73 22.73 0.00 6.53
21 22 2.417239 CGTTAACTTAGATTTGGCGCCA 59.583 45.455 29.03 29.03 0.00 5.69
22 23 3.485216 CGTTAACTTAGATTTGGCGCCAG 60.485 47.826 30.75 18.58 0.00 4.85
23 24 2.200373 AACTTAGATTTGGCGCCAGT 57.800 45.000 30.75 22.46 0.00 4.00
24 25 1.739067 ACTTAGATTTGGCGCCAGTC 58.261 50.000 30.75 28.66 0.00 3.51
25 26 0.652592 CTTAGATTTGGCGCCAGTCG 59.347 55.000 30.75 14.63 42.12 4.18
26 27 0.248012 TTAGATTTGGCGCCAGTCGA 59.752 50.000 30.75 23.27 41.67 4.20
27 28 0.248012 TAGATTTGGCGCCAGTCGAA 59.752 50.000 30.75 21.54 41.67 3.71
28 29 1.134694 GATTTGGCGCCAGTCGAAC 59.865 57.895 30.75 14.80 41.67 3.95
29 30 1.298859 GATTTGGCGCCAGTCGAACT 61.299 55.000 30.75 8.62 41.67 3.01
30 31 0.889186 ATTTGGCGCCAGTCGAACTT 60.889 50.000 30.75 3.91 41.67 2.66
31 32 1.503818 TTTGGCGCCAGTCGAACTTC 61.504 55.000 30.75 0.00 41.67 3.01
32 33 3.119096 GGCGCCAGTCGAACTTCC 61.119 66.667 24.80 0.00 41.67 3.46
33 34 2.357034 GCGCCAGTCGAACTTCCA 60.357 61.111 0.00 0.00 41.67 3.53
34 35 1.741770 GCGCCAGTCGAACTTCCAT 60.742 57.895 0.00 0.00 41.67 3.41
35 36 1.696832 GCGCCAGTCGAACTTCCATC 61.697 60.000 0.00 0.00 41.67 3.51
36 37 0.108615 CGCCAGTCGAACTTCCATCT 60.109 55.000 0.00 0.00 41.67 2.90
37 38 1.646189 GCCAGTCGAACTTCCATCTC 58.354 55.000 0.00 0.00 0.00 2.75
38 39 1.066858 GCCAGTCGAACTTCCATCTCA 60.067 52.381 0.00 0.00 0.00 3.27
39 40 2.611518 CCAGTCGAACTTCCATCTCAC 58.388 52.381 0.00 0.00 0.00 3.51
40 41 2.232452 CCAGTCGAACTTCCATCTCACT 59.768 50.000 0.00 0.00 0.00 3.41
41 42 3.306364 CCAGTCGAACTTCCATCTCACTT 60.306 47.826 0.00 0.00 0.00 3.16
42 43 3.923461 CAGTCGAACTTCCATCTCACTTC 59.077 47.826 0.00 0.00 0.00 3.01
43 44 2.917971 GTCGAACTTCCATCTCACTTCG 59.082 50.000 0.00 0.00 33.47 3.79
44 45 1.656095 CGAACTTCCATCTCACTTCGC 59.344 52.381 0.00 0.00 0.00 4.70
45 46 2.003301 GAACTTCCATCTCACTTCGCC 58.997 52.381 0.00 0.00 0.00 5.54
46 47 0.108615 ACTTCCATCTCACTTCGCCG 60.109 55.000 0.00 0.00 0.00 6.46
47 48 1.424493 CTTCCATCTCACTTCGCCGC 61.424 60.000 0.00 0.00 0.00 6.53
48 49 3.257561 CCATCTCACTTCGCCGCG 61.258 66.667 6.39 6.39 0.00 6.46
49 50 3.918220 CATCTCACTTCGCCGCGC 61.918 66.667 8.21 0.00 0.00 6.86
61 62 4.421479 CCGCGCGTTCCTCTGTCT 62.421 66.667 29.95 0.00 0.00 3.41
62 63 2.483745 CGCGCGTTCCTCTGTCTA 59.516 61.111 24.19 0.00 0.00 2.59
63 64 1.868251 CGCGCGTTCCTCTGTCTAC 60.868 63.158 24.19 0.00 0.00 2.59
64 65 1.507174 GCGCGTTCCTCTGTCTACT 59.493 57.895 8.43 0.00 0.00 2.57
65 66 0.523757 GCGCGTTCCTCTGTCTACTC 60.524 60.000 8.43 0.00 0.00 2.59
66 67 0.803117 CGCGTTCCTCTGTCTACTCA 59.197 55.000 0.00 0.00 0.00 3.41
67 68 1.466024 CGCGTTCCTCTGTCTACTCAC 60.466 57.143 0.00 0.00 0.00 3.51
68 69 1.135344 GCGTTCCTCTGTCTACTCACC 60.135 57.143 0.00 0.00 0.00 4.02
69 70 1.130749 CGTTCCTCTGTCTACTCACCG 59.869 57.143 0.00 0.00 0.00 4.94
70 71 1.473278 GTTCCTCTGTCTACTCACCGG 59.527 57.143 0.00 0.00 0.00 5.28
71 72 0.680280 TCCTCTGTCTACTCACCGGC 60.680 60.000 0.00 0.00 0.00 6.13
72 73 0.965866 CCTCTGTCTACTCACCGGCA 60.966 60.000 0.00 0.00 0.00 5.69
73 74 0.171455 CTCTGTCTACTCACCGGCAC 59.829 60.000 0.00 0.00 0.00 5.01
74 75 1.215647 CTGTCTACTCACCGGCACC 59.784 63.158 0.00 0.00 0.00 5.01
75 76 2.181021 GTCTACTCACCGGCACCG 59.819 66.667 0.00 1.02 39.44 4.94
76 77 2.282674 TCTACTCACCGGCACCGT 60.283 61.111 0.00 0.00 37.81 4.83
77 78 1.002257 TCTACTCACCGGCACCGTA 60.002 57.895 0.00 0.00 37.81 4.02
78 79 1.138247 CTACTCACCGGCACCGTAC 59.862 63.158 0.00 0.00 37.81 3.67
79 80 2.588146 CTACTCACCGGCACCGTACG 62.588 65.000 8.69 8.69 37.81 3.67
118 119 3.728474 GAGGCGATCGACCGAGTA 58.272 61.111 19.53 0.00 0.00 2.59
119 120 2.020131 GAGGCGATCGACCGAGTAA 58.980 57.895 19.53 0.00 0.00 2.24
120 121 0.041135 GAGGCGATCGACCGAGTAAG 60.041 60.000 19.53 0.00 0.00 2.34
121 122 1.657794 GGCGATCGACCGAGTAAGC 60.658 63.158 21.57 0.00 0.00 3.09
122 123 2.004489 GCGATCGACCGAGTAAGCG 61.004 63.158 21.57 0.00 0.00 4.68
123 124 2.004489 CGATCGACCGAGTAAGCGC 61.004 63.158 10.26 0.00 0.00 5.92
124 125 2.004489 GATCGACCGAGTAAGCGCG 61.004 63.158 0.00 0.00 37.65 6.86
125 126 4.824166 TCGACCGAGTAAGCGCGC 62.824 66.667 26.66 26.66 36.60 6.86
129 130 4.541482 CCGAGTAAGCGCGCCGTA 62.541 66.667 30.33 18.15 36.60 4.02
130 131 3.310251 CGAGTAAGCGCGCCGTAC 61.310 66.667 30.33 28.09 0.00 3.67
131 132 2.202518 GAGTAAGCGCGCCGTACA 60.203 61.111 31.95 13.00 31.78 2.90
132 133 2.502965 GAGTAAGCGCGCCGTACAC 61.503 63.158 31.95 25.67 31.78 2.90
133 134 3.894097 GTAAGCGCGCCGTACACG 61.894 66.667 30.33 1.10 39.44 4.49
163 164 4.354162 GGCAACCACCCCCGCTAA 62.354 66.667 0.00 0.00 0.00 3.09
164 165 2.750237 GCAACCACCCCCGCTAAG 60.750 66.667 0.00 0.00 0.00 2.18
165 166 2.750237 CAACCACCCCCGCTAAGC 60.750 66.667 0.00 0.00 0.00 3.09
176 177 2.615618 GCTAAGCGTGCGATCGTG 59.384 61.111 17.81 8.32 0.00 4.35
177 178 2.615618 CTAAGCGTGCGATCGTGC 59.384 61.111 17.81 17.61 0.00 5.34
178 179 3.184881 CTAAGCGTGCGATCGTGCG 62.185 63.158 22.35 22.35 37.81 5.34
179 180 3.670644 TAAGCGTGCGATCGTGCGA 62.671 57.895 27.85 15.90 37.81 5.10
180 181 2.930012 TAAGCGTGCGATCGTGCGAT 62.930 55.000 27.85 22.20 37.81 4.58
181 182 4.617454 GCGTGCGATCGTGCGATG 62.617 66.667 27.85 13.10 37.81 3.84
182 183 4.617454 CGTGCGATCGTGCGATGC 62.617 66.667 22.26 14.64 37.81 3.91
183 184 3.553765 GTGCGATCGTGCGATGCA 61.554 61.111 17.81 19.46 36.81 3.96
184 185 2.813042 TGCGATCGTGCGATGCAA 60.813 55.556 17.81 10.46 41.47 4.08
185 186 2.350091 GCGATCGTGCGATGCAAC 60.350 61.111 17.81 0.00 41.47 4.17
186 187 2.802667 GCGATCGTGCGATGCAACT 61.803 57.895 17.81 0.00 41.47 3.16
187 188 1.012998 CGATCGTGCGATGCAACTG 60.013 57.895 12.03 0.00 41.47 3.16
188 189 1.297158 GATCGTGCGATGCAACTGC 60.297 57.895 12.03 0.00 41.47 4.40
189 190 1.699656 GATCGTGCGATGCAACTGCT 61.700 55.000 12.03 0.00 41.47 4.24
190 191 1.300971 ATCGTGCGATGCAACTGCTT 61.301 50.000 6.27 0.00 41.47 3.91
191 192 1.794785 CGTGCGATGCAACTGCTTG 60.795 57.895 2.95 0.00 41.47 4.01
199 200 2.050714 CAACTGCTTGCACTGGCG 60.051 61.111 0.00 0.00 45.35 5.69
200 201 3.969802 AACTGCTTGCACTGGCGC 61.970 61.111 0.00 0.00 45.35 6.53
202 203 4.695231 CTGCTTGCACTGGCGCAC 62.695 66.667 10.83 0.00 42.87 5.34
205 206 3.041351 CTTGCACTGGCGCACGTA 61.041 61.111 10.83 0.00 42.87 3.57
206 207 3.015293 CTTGCACTGGCGCACGTAG 62.015 63.158 10.83 4.05 42.87 3.51
207 208 3.800685 TTGCACTGGCGCACGTAGT 62.801 57.895 10.83 4.77 42.87 2.73
208 209 2.126228 GCACTGGCGCACGTAGTA 60.126 61.111 10.83 0.00 41.61 1.82
209 210 1.518572 GCACTGGCGCACGTAGTAT 60.519 57.895 10.83 0.00 41.61 2.12
210 211 1.480219 GCACTGGCGCACGTAGTATC 61.480 60.000 10.83 0.04 41.61 2.24
211 212 0.870307 CACTGGCGCACGTAGTATCC 60.870 60.000 10.83 0.00 41.61 2.59
212 213 1.657487 CTGGCGCACGTAGTATCCG 60.657 63.158 10.83 0.00 41.61 4.18
213 214 3.028590 GGCGCACGTAGTATCCGC 61.029 66.667 10.83 0.00 41.61 5.54
214 215 2.025727 GCGCACGTAGTATCCGCT 59.974 61.111 0.30 0.00 41.61 5.52
215 216 2.009755 GCGCACGTAGTATCCGCTC 61.010 63.158 0.30 0.00 41.61 5.03
216 217 1.370172 CGCACGTAGTATCCGCTCC 60.370 63.158 0.00 0.00 41.61 4.70
217 218 1.370172 GCACGTAGTATCCGCTCCG 60.370 63.158 0.00 0.00 41.61 4.63
218 219 1.370172 CACGTAGTATCCGCTCCGC 60.370 63.158 0.00 0.00 41.61 5.54
219 220 1.525535 ACGTAGTATCCGCTCCGCT 60.526 57.895 0.00 0.00 41.94 5.52
220 221 1.099879 ACGTAGTATCCGCTCCGCTT 61.100 55.000 0.00 0.00 41.94 4.68
221 222 0.660595 CGTAGTATCCGCTCCGCTTG 60.661 60.000 0.00 0.00 0.00 4.01
222 223 0.940047 GTAGTATCCGCTCCGCTTGC 60.940 60.000 0.00 0.00 0.00 4.01
223 224 2.083835 TAGTATCCGCTCCGCTTGCC 62.084 60.000 0.00 0.00 0.00 4.52
224 225 3.154473 TATCCGCTCCGCTTGCCT 61.154 61.111 0.00 0.00 0.00 4.75
225 226 3.445518 TATCCGCTCCGCTTGCCTG 62.446 63.158 0.00 0.00 0.00 4.85
252 253 3.979961 GTGCGTGCGTTCGTTCGT 61.980 61.111 10.81 0.00 0.00 3.85
253 254 3.256105 TGCGTGCGTTCGTTCGTT 61.256 55.556 10.81 0.00 0.00 3.85
254 255 2.494114 GCGTGCGTTCGTTCGTTC 60.494 61.111 10.81 0.00 0.00 3.95
255 256 2.201715 CGTGCGTTCGTTCGTTCG 60.202 61.111 4.37 7.17 0.00 3.95
261 262 1.434379 GTTCGTTCGTTCGTGCGTG 60.434 57.895 9.57 0.00 0.00 5.34
295 299 1.677820 CCCTCCGGCAAACGTAAAGAT 60.678 52.381 0.00 0.00 42.24 2.40
300 304 2.223249 CCGGCAAACGTAAAGATCATGG 60.223 50.000 0.00 0.00 42.24 3.66
301 305 2.791158 CGGCAAACGTAAAGATCATGGC 60.791 50.000 0.00 0.00 37.93 4.40
302 306 2.423538 GGCAAACGTAAAGATCATGGCT 59.576 45.455 0.00 0.00 0.00 4.75
303 307 3.487544 GGCAAACGTAAAGATCATGGCTC 60.488 47.826 0.00 0.00 0.00 4.70
313 329 6.512342 AAAGATCATGGCTCTTCTTTCTTG 57.488 37.500 10.61 0.00 34.22 3.02
344 360 2.435805 CTCCCAAAGATGATCCCGAGAA 59.564 50.000 0.00 0.00 0.00 2.87
346 362 2.945668 CCCAAAGATGATCCCGAGAAAC 59.054 50.000 0.00 0.00 0.00 2.78
356 378 0.601558 CCCGAGAAACACTCCGAGAA 59.398 55.000 1.33 0.00 42.18 2.87
587 613 2.473891 GAAAACCACCCCCGATCCGT 62.474 60.000 0.00 0.00 0.00 4.69
699 1055 1.662686 CCCCCTATCTCCTTCCATCC 58.337 60.000 0.00 0.00 0.00 3.51
700 1056 1.132397 CCCCCTATCTCCTTCCATCCA 60.132 57.143 0.00 0.00 0.00 3.41
701 1057 2.498057 CCCCCTATCTCCTTCCATCCAT 60.498 54.545 0.00 0.00 0.00 3.41
702 1058 2.843113 CCCCTATCTCCTTCCATCCATC 59.157 54.545 0.00 0.00 0.00 3.51
703 1059 3.524826 CCCTATCTCCTTCCATCCATCA 58.475 50.000 0.00 0.00 0.00 3.07
704 1060 3.262915 CCCTATCTCCTTCCATCCATCAC 59.737 52.174 0.00 0.00 0.00 3.06
1017 1373 1.070445 CATGCTCCGGACCATCTCC 59.930 63.158 9.39 0.00 35.33 3.71
1276 1632 2.365105 ACCGGATCGACCCCATGT 60.365 61.111 9.46 0.00 34.64 3.21
1641 2003 1.248101 TGTGCCGGAGACTCGATGAA 61.248 55.000 5.05 0.00 0.00 2.57
1697 2059 1.672881 CCCATTTGTCCTCGATTCTGC 59.327 52.381 0.00 0.00 0.00 4.26
1738 2100 1.446099 GATCGTTGCGGAGTGCTGA 60.446 57.895 0.00 0.00 46.63 4.26
1744 2106 1.802337 TTGCGGAGTGCTGACGTACT 61.802 55.000 0.00 0.00 46.63 2.73
1787 2149 4.710375 GGACTAGGACAATTCAGTGGTAGA 59.290 45.833 0.00 0.00 0.00 2.59
1855 2217 5.503927 AGGCAGTTGACATAATTGAGTGAT 58.496 37.500 0.00 0.00 0.00 3.06
1913 2275 4.644498 TGCACCTGGTTTTAAGTACTACC 58.356 43.478 0.00 5.70 0.00 3.18
1914 2276 4.005650 GCACCTGGTTTTAAGTACTACCC 58.994 47.826 9.57 0.81 0.00 3.69
1915 2277 4.582869 CACCTGGTTTTAAGTACTACCCC 58.417 47.826 9.57 1.13 0.00 4.95
1916 2278 3.588842 ACCTGGTTTTAAGTACTACCCCC 59.411 47.826 9.57 1.76 0.00 5.40
1917 2279 3.848377 CCTGGTTTTAAGTACTACCCCCT 59.152 47.826 9.57 0.00 0.00 4.79
1918 2280 4.080695 CCTGGTTTTAAGTACTACCCCCTC 60.081 50.000 9.57 0.00 0.00 4.30
1919 2281 3.845992 TGGTTTTAAGTACTACCCCCTCC 59.154 47.826 9.57 2.38 0.00 4.30
1920 2282 3.118629 GGTTTTAAGTACTACCCCCTCCG 60.119 52.174 0.00 0.00 0.00 4.63
1921 2283 3.473113 TTTAAGTACTACCCCCTCCGT 57.527 47.619 0.00 0.00 0.00 4.69
1922 2284 2.736670 TAAGTACTACCCCCTCCGTC 57.263 55.000 0.00 0.00 0.00 4.79
1923 2285 0.032714 AAGTACTACCCCCTCCGTCC 60.033 60.000 0.00 0.00 0.00 4.79
1924 2286 1.456518 GTACTACCCCCTCCGTCCC 60.457 68.421 0.00 0.00 0.00 4.46
1925 2287 1.935400 TACTACCCCCTCCGTCCCA 60.935 63.158 0.00 0.00 0.00 4.37
1926 2288 1.298906 TACTACCCCCTCCGTCCCAT 61.299 60.000 0.00 0.00 0.00 4.00
1927 2289 1.298906 ACTACCCCCTCCGTCCCATA 61.299 60.000 0.00 0.00 0.00 2.74
1928 2290 0.105349 CTACCCCCTCCGTCCCATAA 60.105 60.000 0.00 0.00 0.00 1.90
1929 2291 0.569204 TACCCCCTCCGTCCCATAAT 59.431 55.000 0.00 0.00 0.00 1.28
1930 2292 0.569204 ACCCCCTCCGTCCCATAATA 59.431 55.000 0.00 0.00 0.00 0.98
1931 2293 1.153565 ACCCCCTCCGTCCCATAATAT 59.846 52.381 0.00 0.00 0.00 1.28
1932 2294 2.387861 ACCCCCTCCGTCCCATAATATA 59.612 50.000 0.00 0.00 0.00 0.86
1933 2295 3.181392 ACCCCCTCCGTCCCATAATATAA 60.181 47.826 0.00 0.00 0.00 0.98
1934 2296 3.454812 CCCCCTCCGTCCCATAATATAAG 59.545 52.174 0.00 0.00 0.00 1.73
1935 2297 4.359105 CCCCTCCGTCCCATAATATAAGA 58.641 47.826 0.00 0.00 0.00 2.10
1936 2298 4.406003 CCCCTCCGTCCCATAATATAAGAG 59.594 50.000 0.00 0.00 0.00 2.85
1937 2299 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
1938 2300 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
1939 2301 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
1940 2302 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
1941 2303 4.625742 CCGTCCCATAATATAAGAGCGTTG 59.374 45.833 0.00 0.00 0.00 4.10
1942 2304 5.227908 CGTCCCATAATATAAGAGCGTTGT 58.772 41.667 0.00 0.00 0.00 3.32
1943 2305 5.118664 CGTCCCATAATATAAGAGCGTTGTG 59.881 44.000 0.00 0.00 0.00 3.33
1944 2306 5.989777 GTCCCATAATATAAGAGCGTTGTGT 59.010 40.000 0.00 0.00 0.00 3.72
1945 2307 7.149973 GTCCCATAATATAAGAGCGTTGTGTA 58.850 38.462 0.00 0.00 0.00 2.90
1946 2308 7.654520 GTCCCATAATATAAGAGCGTTGTGTAA 59.345 37.037 0.00 0.00 0.00 2.41
1947 2309 8.372459 TCCCATAATATAAGAGCGTTGTGTAAT 58.628 33.333 0.00 0.00 0.00 1.89
1948 2310 8.443160 CCCATAATATAAGAGCGTTGTGTAATG 58.557 37.037 0.00 0.00 0.00 1.90
1949 2311 8.988934 CCATAATATAAGAGCGTTGTGTAATGT 58.011 33.333 0.00 0.00 0.00 2.71
1956 2318 7.673810 AAGAGCGTTGTGTAATGTTAAAAAC 57.326 32.000 0.00 0.00 0.00 2.43
1957 2319 5.905181 AGAGCGTTGTGTAATGTTAAAAACG 59.095 36.000 0.00 0.00 41.20 3.60
1960 2322 6.107094 CGTTGTGTAATGTTAAAAACGCTC 57.893 37.500 0.00 0.00 33.51 5.03
1961 2323 5.905181 CGTTGTGTAATGTTAAAAACGCTCT 59.095 36.000 0.00 0.00 33.51 4.09
1962 2324 6.412653 CGTTGTGTAATGTTAAAAACGCTCTT 59.587 34.615 0.00 0.00 33.51 2.85
1963 2325 7.583401 CGTTGTGTAATGTTAAAAACGCTCTTA 59.417 33.333 0.00 0.00 33.51 2.10
1964 2326 9.389570 GTTGTGTAATGTTAAAAACGCTCTTAT 57.610 29.630 0.00 0.00 0.00 1.73
1973 2335 9.616156 TGTTAAAAACGCTCTTATATTATGGGA 57.384 29.630 0.00 0.00 0.00 4.37
1974 2336 9.874215 GTTAAAAACGCTCTTATATTATGGGAC 57.126 33.333 0.00 0.00 0.00 4.46
1975 2337 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
1976 2338 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
1977 2339 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
1978 2340 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
1979 2341 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
1980 2342 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
1999 2361 1.002544 GGAGTAGCTGACTGTGCCTTT 59.997 52.381 0.00 0.00 39.06 3.11
2011 2373 8.773645 GCTGACTGTGCCTTTAAATTAAAATTT 58.226 29.630 6.00 6.00 41.24 1.82
2050 2413 1.068895 TGCTTTGCTCAATGGTGGTTG 59.931 47.619 0.00 0.00 0.00 3.77
2053 2416 2.363306 TTGCTCAATGGTGGTTGTCT 57.637 45.000 0.00 0.00 0.00 3.41
2074 2437 6.376864 TGTCTGAATTTTTGGTCTGTGAGAAA 59.623 34.615 0.00 0.00 0.00 2.52
2078 2441 9.748708 CTGAATTTTTGGTCTGTGAGAAAATAA 57.251 29.630 0.00 0.00 31.70 1.40
2268 2710 8.776376 TGCATGTACAGGTTATCATATATGTG 57.224 34.615 12.42 5.10 0.00 3.21
2275 2717 8.657387 ACAGGTTATCATATATGTGCTACTCT 57.343 34.615 12.42 1.47 0.00 3.24
2285 2727 1.005037 TGCTACTCTTGGGTGTGCG 60.005 57.895 0.00 0.00 0.00 5.34
2287 2729 1.079127 CTACTCTTGGGTGTGCGGG 60.079 63.158 0.00 0.00 0.00 6.13
2304 2746 4.334481 GTGCGGGTATGCTGTAAACTAAAT 59.666 41.667 0.00 0.00 35.36 1.40
2332 2775 4.503370 GCAATAGTTCCTCGTGCTACTTAC 59.497 45.833 0.00 0.00 32.43 2.34
2381 2824 6.361433 TCCTTCTGTGTTTGTATTTGGAAGA 58.639 36.000 0.00 0.00 33.13 2.87
2383 2826 7.013274 TCCTTCTGTGTTTGTATTTGGAAGAAG 59.987 37.037 0.00 0.00 38.42 2.85
2386 2829 5.830912 TGTGTTTGTATTTGGAAGAAGCTG 58.169 37.500 0.00 0.00 0.00 4.24
2413 2856 3.906660 CCTGTCGCAGGTTTACTCA 57.093 52.632 15.27 0.00 45.82 3.41
2467 2912 7.656707 AAAATGCAACAAATATGACCTTGTC 57.343 32.000 0.00 0.00 34.71 3.18
2516 2961 6.811253 TTTCCAGAACACAACATACCATAC 57.189 37.500 0.00 0.00 0.00 2.39
2526 2971 7.398829 ACACAACATACCATACTTCCAACATA 58.601 34.615 0.00 0.00 0.00 2.29
2527 2972 7.335924 ACACAACATACCATACTTCCAACATAC 59.664 37.037 0.00 0.00 0.00 2.39
2528 2973 7.335673 CACAACATACCATACTTCCAACATACA 59.664 37.037 0.00 0.00 0.00 2.29
2529 2974 8.052748 ACAACATACCATACTTCCAACATACAT 58.947 33.333 0.00 0.00 0.00 2.29
2530 2975 9.554395 CAACATACCATACTTCCAACATACATA 57.446 33.333 0.00 0.00 0.00 2.29
2532 2977 9.725019 ACATACCATACTTCCAACATACATATG 57.275 33.333 0.00 0.00 39.55 1.78
2533 2978 8.668353 CATACCATACTTCCAACATACATATGC 58.332 37.037 1.58 0.00 37.19 3.14
2534 2979 6.600388 ACCATACTTCCAACATACATATGCA 58.400 36.000 1.58 0.00 37.19 3.96
2819 3264 6.593382 TGGCTTTTAAATGGCATATTTGTGAC 59.407 34.615 21.69 0.00 34.46 3.67
3160 3605 2.357836 CAGGCAAGGGCATCACCT 59.642 61.111 0.00 0.00 44.56 4.00
3169 3614 1.028868 GGGCATCACCTCTTCACTGC 61.029 60.000 0.00 0.00 39.10 4.40
3208 3653 6.524101 ACTGTCTGAGAAGATTCCTACTTC 57.476 41.667 0.00 0.00 42.53 3.01
3241 3686 6.932960 TCGATCTATTCATGAATGCTCAATGT 59.067 34.615 27.59 4.56 34.49 2.71
3269 3714 5.888724 ACATAGTTGCTCTGCTCTTAGACTA 59.111 40.000 0.00 0.00 0.00 2.59
3270 3715 6.378564 ACATAGTTGCTCTGCTCTTAGACTAA 59.621 38.462 0.00 0.00 0.00 2.24
3271 3716 5.930837 AGTTGCTCTGCTCTTAGACTAAT 57.069 39.130 0.00 0.00 0.00 1.73
3272 3717 6.293004 AGTTGCTCTGCTCTTAGACTAATT 57.707 37.500 0.00 0.00 0.00 1.40
3273 3718 7.411486 AGTTGCTCTGCTCTTAGACTAATTA 57.589 36.000 0.00 0.00 0.00 1.40
3473 3920 7.448777 GGATATGTAGGTGAAGATGTAGAGTCA 59.551 40.741 0.00 0.00 0.00 3.41
3522 3969 2.224314 GTGGCTCGCTATTTAATGCCTC 59.776 50.000 0.00 0.00 40.82 4.70
3528 3975 2.814336 CGCTATTTAATGCCTCCCCTTC 59.186 50.000 0.00 0.00 0.00 3.46
3683 4130 9.740710 AGTAGATAAAATAACAAAGAAGGTGCT 57.259 29.630 0.00 0.00 0.00 4.40
3725 4173 4.187694 CTGAGTAGCTTTTTAGCCAGGAG 58.812 47.826 0.00 0.00 34.90 3.69
3726 4174 3.583086 TGAGTAGCTTTTTAGCCAGGAGT 59.417 43.478 0.00 0.00 34.90 3.85
3876 4324 9.581289 TTGGTATCCTTCTTTTTGTTCTCATAA 57.419 29.630 0.00 0.00 0.00 1.90
3920 4369 5.874810 GTGTCTAAAATCTGGTGATACTGCA 59.125 40.000 0.00 0.00 31.70 4.41
4155 4766 9.850628 ATATGGATTGAGAATTAATTGCATTCG 57.149 29.630 5.17 0.00 36.01 3.34
4210 4821 1.334869 GTGCAAAGGACACTCCACTTG 59.665 52.381 0.00 0.00 39.61 3.16
4365 4976 1.606313 CGGGGCTGTGGTGGAAATT 60.606 57.895 0.00 0.00 0.00 1.82
4367 4978 1.055849 GGGGCTGTGGTGGAAATTTT 58.944 50.000 0.00 0.00 0.00 1.82
4414 5025 4.467795 TCAGCTACTTTGCTCATTAGGAGT 59.532 41.667 0.00 0.00 45.88 3.85
4579 5197 9.689976 CAAACATTTTAAGTTCATATGTGGTGA 57.310 29.630 1.90 0.00 30.43 4.02
4783 5402 3.457234 TGATTGATTTATCGACAGCGCT 58.543 40.909 2.64 2.64 37.46 5.92
4791 5410 0.390340 ATCGACAGCGCTTGTGATGT 60.390 50.000 7.50 1.02 41.05 3.06
4799 5418 1.267235 GCGCTTGTGATGTTCTGATCG 60.267 52.381 0.00 0.00 0.00 3.69
4971 5590 1.727335 GTTAGTTTGGCAGCTCTCGAC 59.273 52.381 0.00 0.00 0.00 4.20
5045 5664 2.656947 TGAGGTTGCTGGTTTAAGCT 57.343 45.000 0.00 0.00 43.90 3.74
5076 5695 6.156775 TGTCCTCCTTCATTCAGAATCATGTA 59.843 38.462 0.00 0.00 35.25 2.29
5088 5707 6.634805 TCAGAATCATGTACTGTTCTTCTCC 58.365 40.000 12.98 0.00 33.93 3.71
5162 5781 1.818785 GGCTAGCCTGCTGAAGCTG 60.819 63.158 27.17 2.99 40.28 4.24
5284 5903 8.893727 CCACTAAAACTTGGAAGTGATTATAGG 58.106 37.037 3.00 0.00 41.47 2.57
5298 5917 4.949238 TGATTATAGGCTTGCTTCTTTGCA 59.051 37.500 0.00 0.00 41.65 4.08
5366 5985 2.095567 CACTTTACTGATGGTGCACTGC 60.096 50.000 17.98 6.98 0.00 4.40
5548 6167 1.205655 CAGATCCCTGACGAGAAAGCA 59.794 52.381 0.00 0.00 43.02 3.91
5600 6219 1.691219 GAGGAGGCCATTGGTTCCA 59.309 57.895 22.47 0.00 33.24 3.53
5611 6230 0.541764 TTGGTTCCATTGACAGGCCC 60.542 55.000 0.00 0.00 0.00 5.80
5744 6365 6.900194 AGTTACCCTATTGTCACATGCTATT 58.100 36.000 0.00 0.00 0.00 1.73
5807 6429 2.873649 GCTCTTAACTTGCACTGCCTCT 60.874 50.000 0.00 0.00 0.00 3.69
5808 6430 2.740981 CTCTTAACTTGCACTGCCTCTG 59.259 50.000 0.00 0.00 0.00 3.35
5948 6573 9.706691 CACCGTATATTATGTAAAATGTCCTCT 57.293 33.333 0.00 0.00 0.00 3.69
5983 6608 7.384932 CCAGTCAATTTAACCAATTTTCCTGTC 59.615 37.037 0.00 0.00 32.24 3.51
6019 6644 2.567049 GGTGAGGTCCGACGAGTG 59.433 66.667 0.00 0.00 0.00 3.51
6091 6716 1.401539 GCCTTTTGATCGAGCAACCAC 60.402 52.381 16.94 2.37 0.00 4.16
6188 6938 2.660572 TGTTGGCAAAGGTGTACACAT 58.339 42.857 26.51 18.20 0.00 3.21
6195 6945 4.379813 GGCAAAGGTGTACACATCAATCAG 60.380 45.833 26.51 9.20 0.00 2.90
6324 7078 1.070758 ACATCTGTTCAAGCCTGTCGT 59.929 47.619 0.00 0.00 0.00 4.34
6325 7079 2.146342 CATCTGTTCAAGCCTGTCGTT 58.854 47.619 0.00 0.00 0.00 3.85
6326 7080 1.865865 TCTGTTCAAGCCTGTCGTTC 58.134 50.000 0.00 0.00 0.00 3.95
6328 7082 1.528586 CTGTTCAAGCCTGTCGTTCTG 59.471 52.381 0.00 0.00 0.00 3.02
6332 7087 0.036010 CAAGCCTGTCGTTCTGGGAT 60.036 55.000 7.89 0.00 35.96 3.85
6348 7103 3.760151 CTGGGATGCTGTGATTTCTTCAA 59.240 43.478 0.00 0.00 35.70 2.69
6356 7111 4.802999 CTGTGATTTCTTCAAGGAAAGCC 58.197 43.478 1.20 0.00 39.82 4.35
6403 7164 5.253330 ACCATGACAAGAATTATGGAACGT 58.747 37.500 9.22 0.00 42.05 3.99
6409 7170 5.425630 ACAAGAATTATGGAACGTAGGGAC 58.574 41.667 0.00 0.00 0.00 4.46
6410 7171 5.189145 ACAAGAATTATGGAACGTAGGGACT 59.811 40.000 0.00 0.00 46.37 3.85
6478 7239 4.761739 TCTTCAGGTCAATGGTGCTAAAAG 59.238 41.667 0.00 0.00 0.00 2.27
6483 7244 3.763897 GGTCAATGGTGCTAAAAGATGGT 59.236 43.478 0.00 0.00 0.00 3.55
6489 7250 3.568007 TGGTGCTAAAAGATGGTTCACAC 59.432 43.478 0.00 0.00 0.00 3.82
6491 7252 3.057526 GTGCTAAAAGATGGTTCACACCC 60.058 47.826 0.00 0.00 43.49 4.61
6492 7253 2.492088 GCTAAAAGATGGTTCACACCCC 59.508 50.000 0.00 0.00 43.49 4.95
6493 7254 2.009681 AAAAGATGGTTCACACCCCC 57.990 50.000 0.00 0.00 43.49 5.40
6494 7255 1.158007 AAAGATGGTTCACACCCCCT 58.842 50.000 0.00 0.00 43.49 4.79
6495 7256 0.405585 AAGATGGTTCACACCCCCTG 59.594 55.000 0.00 0.00 43.49 4.45
6496 7257 1.678970 GATGGTTCACACCCCCTGC 60.679 63.158 0.00 0.00 43.49 4.85
6497 7258 2.424842 GATGGTTCACACCCCCTGCA 62.425 60.000 0.00 0.00 43.49 4.41
6498 7259 2.017668 ATGGTTCACACCCCCTGCAA 62.018 55.000 0.00 0.00 43.49 4.08
6499 7260 1.456705 GGTTCACACCCCCTGCAAA 60.457 57.895 0.00 0.00 37.03 3.68
6500 7261 1.045911 GGTTCACACCCCCTGCAAAA 61.046 55.000 0.00 0.00 37.03 2.44
6501 7262 0.827368 GTTCACACCCCCTGCAAAAA 59.173 50.000 0.00 0.00 0.00 1.94
6529 7290 3.168773 GGTTCACACCACACACAGT 57.831 52.632 0.00 0.00 43.61 3.55
6565 7330 1.719600 CTGGGCAGTTTCGAAGAGAG 58.280 55.000 0.00 0.00 38.43 3.20
6571 7340 2.333014 CAGTTTCGAAGAGAGAGGTGC 58.667 52.381 0.00 0.00 38.43 5.01
6578 7347 1.474478 GAAGAGAGAGGTGCATGTCGA 59.526 52.381 0.00 0.00 0.00 4.20
6603 7372 2.571757 CGCAGCGACCTCCTAACA 59.428 61.111 9.98 0.00 0.00 2.41
6667 7436 2.333225 GATCGCGAGGCTGATCGT 59.667 61.111 16.66 0.00 44.53 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.084546 GACTGGCGCCAAATCTAAGTT 58.915 47.619 32.09 7.43 0.00 2.66
5 6 1.739067 GACTGGCGCCAAATCTAAGT 58.261 50.000 32.09 22.60 0.00 2.24
7 8 0.248012 TCGACTGGCGCCAAATCTAA 59.752 50.000 32.09 17.38 40.61 2.10
8 9 0.248012 TTCGACTGGCGCCAAATCTA 59.752 50.000 32.09 19.41 40.61 1.98
9 10 1.003839 TTCGACTGGCGCCAAATCT 60.004 52.632 32.09 13.09 40.61 2.40
11 12 0.889186 AAGTTCGACTGGCGCCAAAT 60.889 50.000 32.09 22.01 40.61 2.32
12 13 1.503818 GAAGTTCGACTGGCGCCAAA 61.504 55.000 32.09 19.31 40.61 3.28
13 14 1.959226 GAAGTTCGACTGGCGCCAA 60.959 57.895 32.09 13.40 40.61 4.52
14 15 2.357034 GAAGTTCGACTGGCGCCA 60.357 61.111 30.59 30.59 40.61 5.69
15 16 3.119096 GGAAGTTCGACTGGCGCC 61.119 66.667 22.73 22.73 40.61 6.53
18 19 1.066858 TGAGATGGAAGTTCGACTGGC 60.067 52.381 0.00 0.00 0.00 4.85
19 20 2.232452 AGTGAGATGGAAGTTCGACTGG 59.768 50.000 0.00 0.00 0.00 4.00
20 21 3.584406 AGTGAGATGGAAGTTCGACTG 57.416 47.619 0.00 0.00 0.00 3.51
21 22 3.366476 CGAAGTGAGATGGAAGTTCGACT 60.366 47.826 6.77 0.00 46.99 4.18
22 23 2.917971 CGAAGTGAGATGGAAGTTCGAC 59.082 50.000 6.77 0.00 46.99 4.20
23 24 2.671351 GCGAAGTGAGATGGAAGTTCGA 60.671 50.000 14.79 0.00 46.99 3.71
24 25 1.656095 GCGAAGTGAGATGGAAGTTCG 59.344 52.381 7.98 7.98 46.83 3.95
25 26 2.003301 GGCGAAGTGAGATGGAAGTTC 58.997 52.381 0.00 0.00 0.00 3.01
26 27 1.673033 CGGCGAAGTGAGATGGAAGTT 60.673 52.381 0.00 0.00 0.00 2.66
27 28 0.108615 CGGCGAAGTGAGATGGAAGT 60.109 55.000 0.00 0.00 0.00 3.01
28 29 1.424493 GCGGCGAAGTGAGATGGAAG 61.424 60.000 12.98 0.00 0.00 3.46
29 30 1.447838 GCGGCGAAGTGAGATGGAA 60.448 57.895 12.98 0.00 0.00 3.53
30 31 2.184322 GCGGCGAAGTGAGATGGA 59.816 61.111 12.98 0.00 0.00 3.41
31 32 3.257561 CGCGGCGAAGTGAGATGG 61.258 66.667 19.16 0.00 0.00 3.51
32 33 3.918220 GCGCGGCGAAGTGAGATG 61.918 66.667 28.54 0.00 0.00 2.90
44 45 3.047718 TAGACAGAGGAACGCGCGG 62.048 63.158 35.22 16.69 0.00 6.46
45 46 1.868251 GTAGACAGAGGAACGCGCG 60.868 63.158 30.96 30.96 0.00 6.86
46 47 0.523757 GAGTAGACAGAGGAACGCGC 60.524 60.000 5.73 0.00 0.00 6.86
47 48 0.803117 TGAGTAGACAGAGGAACGCG 59.197 55.000 3.53 3.53 0.00 6.01
48 49 1.135344 GGTGAGTAGACAGAGGAACGC 60.135 57.143 0.00 0.00 0.00 4.84
49 50 1.130749 CGGTGAGTAGACAGAGGAACG 59.869 57.143 0.00 0.00 0.00 3.95
50 51 1.473278 CCGGTGAGTAGACAGAGGAAC 59.527 57.143 0.00 0.00 0.00 3.62
51 52 1.835494 CCGGTGAGTAGACAGAGGAA 58.165 55.000 0.00 0.00 0.00 3.36
52 53 0.680280 GCCGGTGAGTAGACAGAGGA 60.680 60.000 1.90 0.00 0.00 3.71
53 54 0.965866 TGCCGGTGAGTAGACAGAGG 60.966 60.000 1.90 0.00 0.00 3.69
54 55 0.171455 GTGCCGGTGAGTAGACAGAG 59.829 60.000 1.90 0.00 0.00 3.35
55 56 1.248785 GGTGCCGGTGAGTAGACAGA 61.249 60.000 1.90 0.00 0.00 3.41
56 57 1.215647 GGTGCCGGTGAGTAGACAG 59.784 63.158 1.90 0.00 0.00 3.51
57 58 2.632544 CGGTGCCGGTGAGTAGACA 61.633 63.158 1.90 0.00 35.56 3.41
58 59 1.308069 TACGGTGCCGGTGAGTAGAC 61.308 60.000 15.44 0.00 44.69 2.59
59 60 1.002257 TACGGTGCCGGTGAGTAGA 60.002 57.895 15.44 0.00 44.69 2.59
60 61 1.138247 GTACGGTGCCGGTGAGTAG 59.862 63.158 15.44 0.00 44.69 2.57
61 62 2.689785 CGTACGGTGCCGGTGAGTA 61.690 63.158 15.44 0.00 44.69 2.59
62 63 4.047059 CGTACGGTGCCGGTGAGT 62.047 66.667 15.44 0.94 44.69 3.41
101 102 0.041135 CTTACTCGGTCGATCGCCTC 60.041 60.000 14.58 10.43 0.00 4.70
102 103 2.023318 CTTACTCGGTCGATCGCCT 58.977 57.895 14.58 2.63 0.00 5.52
103 104 1.657794 GCTTACTCGGTCGATCGCC 60.658 63.158 14.58 13.99 0.00 5.54
104 105 2.004489 CGCTTACTCGGTCGATCGC 61.004 63.158 14.58 5.58 0.00 4.58
105 106 2.004489 GCGCTTACTCGGTCGATCG 61.004 63.158 12.98 12.98 0.00 3.69
106 107 2.004489 CGCGCTTACTCGGTCGATC 61.004 63.158 5.56 0.00 0.00 3.69
107 108 2.024305 CGCGCTTACTCGGTCGAT 59.976 61.111 5.56 0.00 0.00 3.59
108 109 4.824166 GCGCGCTTACTCGGTCGA 62.824 66.667 26.67 0.00 0.00 4.20
112 113 4.541482 TACGGCGCGCTTACTCGG 62.541 66.667 32.29 13.39 0.00 4.63
113 114 3.310251 GTACGGCGCGCTTACTCG 61.310 66.667 32.29 26.50 0.00 4.18
114 115 2.202518 TGTACGGCGCGCTTACTC 60.203 61.111 32.29 17.42 0.00 2.59
115 116 2.505557 GTGTACGGCGCGCTTACT 60.506 61.111 32.29 13.00 0.00 2.24
116 117 3.894097 CGTGTACGGCGCGCTTAC 61.894 66.667 32.29 28.71 44.35 2.34
146 147 4.354162 TTAGCGGGGGTGGTTGCC 62.354 66.667 0.00 0.00 0.00 4.52
147 148 2.750237 CTTAGCGGGGGTGGTTGC 60.750 66.667 0.00 0.00 0.00 4.17
148 149 2.750237 GCTTAGCGGGGGTGGTTG 60.750 66.667 0.00 0.00 0.00 3.77
159 160 2.615618 CACGATCGCACGCTTAGC 59.384 61.111 16.60 0.00 36.70 3.09
160 161 2.615618 GCACGATCGCACGCTTAG 59.384 61.111 16.60 0.00 36.70 2.18
161 162 2.930012 ATCGCACGATCGCACGCTTA 62.930 55.000 21.46 10.90 36.70 3.09
163 164 4.854784 ATCGCACGATCGCACGCT 62.855 61.111 21.46 12.14 36.70 5.07
164 165 4.617454 CATCGCACGATCGCACGC 62.617 66.667 21.46 17.35 36.70 5.34
165 166 4.617454 GCATCGCACGATCGCACG 62.617 66.667 20.56 20.56 39.31 5.34
166 167 3.082379 TTGCATCGCACGATCGCAC 62.082 57.895 16.60 6.45 38.71 5.34
167 168 2.813042 TTGCATCGCACGATCGCA 60.813 55.556 16.60 19.10 38.71 5.10
168 169 2.350091 GTTGCATCGCACGATCGC 60.350 61.111 16.60 15.67 38.71 4.58
169 170 1.012998 CAGTTGCATCGCACGATCG 60.013 57.895 14.88 14.88 38.71 3.69
170 171 1.297158 GCAGTTGCATCGCACGATC 60.297 57.895 1.86 0.00 38.71 3.69
171 172 1.300971 AAGCAGTTGCATCGCACGAT 61.301 50.000 6.90 0.00 45.16 3.73
172 173 1.960763 AAGCAGTTGCATCGCACGA 60.961 52.632 6.90 0.00 45.16 4.35
173 174 1.794785 CAAGCAGTTGCATCGCACG 60.795 57.895 6.90 0.00 45.16 5.34
174 175 4.141883 CAAGCAGTTGCATCGCAC 57.858 55.556 6.90 0.00 45.16 5.34
182 183 2.050714 CGCCAGTGCAAGCAGTTG 60.051 61.111 0.00 0.00 37.32 3.16
183 184 3.969802 GCGCCAGTGCAAGCAGTT 61.970 61.111 0.00 0.00 37.32 3.16
190 191 2.220615 ATACTACGTGCGCCAGTGCA 62.221 55.000 4.18 0.88 43.95 4.57
191 192 1.480219 GATACTACGTGCGCCAGTGC 61.480 60.000 4.18 0.00 0.00 4.40
192 193 0.870307 GGATACTACGTGCGCCAGTG 60.870 60.000 4.18 2.87 0.00 3.66
193 194 1.436336 GGATACTACGTGCGCCAGT 59.564 57.895 4.18 7.61 0.00 4.00
194 195 1.657487 CGGATACTACGTGCGCCAG 60.657 63.158 4.18 0.15 0.00 4.85
195 196 2.410060 CGGATACTACGTGCGCCA 59.590 61.111 4.18 0.00 0.00 5.69
198 199 1.370172 GGAGCGGATACTACGTGCG 60.370 63.158 0.00 0.00 0.00 5.34
199 200 1.370172 CGGAGCGGATACTACGTGC 60.370 63.158 0.00 0.00 39.24 5.34
200 201 4.916412 CGGAGCGGATACTACGTG 57.084 61.111 0.00 0.00 39.24 4.49
235 236 3.481257 AACGAACGAACGCACGCAC 62.481 57.895 0.14 0.00 36.70 5.34
236 237 3.200126 GAACGAACGAACGCACGCA 62.200 57.895 0.14 0.00 36.70 5.24
237 238 2.494114 GAACGAACGAACGCACGC 60.494 61.111 0.14 0.00 36.70 5.34
238 239 2.201715 CGAACGAACGAACGCACG 60.202 61.111 0.14 10.55 36.70 5.34
239 240 1.434379 CACGAACGAACGAACGCAC 60.434 57.895 11.97 0.00 36.70 5.34
240 241 2.914948 CACGAACGAACGAACGCA 59.085 55.556 11.97 0.00 36.70 5.24
241 242 2.494114 GCACGAACGAACGAACGC 60.494 61.111 11.97 7.99 36.70 4.84
242 243 2.201715 CGCACGAACGAACGAACG 60.202 61.111 11.97 8.41 37.03 3.95
243 244 1.434379 CACGCACGAACGAACGAAC 60.434 57.895 16.45 3.89 36.70 3.95
244 245 2.914948 CACGCACGAACGAACGAA 59.085 55.556 16.45 0.00 36.70 3.85
245 246 3.684315 GCACGCACGAACGAACGA 61.684 61.111 16.45 0.00 36.70 3.85
247 248 3.979961 ACGCACGCACGAACGAAC 61.980 61.111 14.23 0.13 36.70 3.95
248 249 3.978764 CACGCACGCACGAACGAA 61.979 61.111 14.23 0.00 36.70 3.85
278 282 2.459060 TGATCTTTACGTTTGCCGGA 57.541 45.000 5.05 0.00 42.24 5.14
285 289 5.091261 AGAAGAGCCATGATCTTTACGTT 57.909 39.130 12.62 0.00 38.45 3.99
295 299 2.440409 GGCAAGAAAGAAGAGCCATGA 58.560 47.619 0.00 0.00 44.59 3.07
300 304 1.195674 GTGACGGCAAGAAAGAAGAGC 59.804 52.381 0.00 0.00 0.00 4.09
301 305 1.457303 CGTGACGGCAAGAAAGAAGAG 59.543 52.381 0.00 0.00 0.00 2.85
302 306 1.202486 ACGTGACGGCAAGAAAGAAGA 60.202 47.619 12.38 0.00 0.00 2.87
303 307 1.192534 GACGTGACGGCAAGAAAGAAG 59.807 52.381 12.38 0.00 33.63 2.85
313 329 2.027625 CTTTGGGAGACGTGACGGC 61.028 63.158 10.66 6.23 33.59 5.68
344 360 0.179094 TTGCGTGTTCTCGGAGTGTT 60.179 50.000 4.69 0.00 32.25 3.32
346 362 1.557443 GGTTGCGTGTTCTCGGAGTG 61.557 60.000 4.69 0.00 32.25 3.51
391 413 1.570857 TTATCTGTGGGCCTGGGGTG 61.571 60.000 4.53 0.00 0.00 4.61
392 414 1.230149 TTATCTGTGGGCCTGGGGT 60.230 57.895 4.53 0.00 0.00 4.95
393 415 1.533711 CTTATCTGTGGGCCTGGGG 59.466 63.158 4.53 0.00 0.00 4.96
394 416 1.281925 ACCTTATCTGTGGGCCTGGG 61.282 60.000 4.53 0.00 0.00 4.45
395 417 0.625849 AACCTTATCTGTGGGCCTGG 59.374 55.000 4.53 0.00 0.00 4.45
396 418 1.408822 GGAACCTTATCTGTGGGCCTG 60.409 57.143 4.53 0.00 0.00 4.85
397 419 0.919710 GGAACCTTATCTGTGGGCCT 59.080 55.000 4.53 0.00 0.00 5.19
441 463 3.546543 CCCGGGATTCAGCCGCTA 61.547 66.667 18.48 0.00 0.00 4.26
565 591 0.393944 GATCGGGGGTGGTTTTCTCC 60.394 60.000 0.00 0.00 0.00 3.71
592 618 2.340443 GATCTGGGCCGTCGGATC 59.660 66.667 17.49 13.21 40.85 3.36
689 1045 0.993509 GGGGGTGATGGATGGAAGGA 60.994 60.000 0.00 0.00 0.00 3.36
690 1046 1.538666 GGGGGTGATGGATGGAAGG 59.461 63.158 0.00 0.00 0.00 3.46
1347 1703 0.031111 TCCACCTCTTGATCCGGGAT 60.031 55.000 9.85 9.85 0.00 3.85
1446 1802 2.660802 CCCTGCTTACGTCGGGTT 59.339 61.111 0.00 0.00 31.89 4.11
1641 2003 2.505982 CCCTGCCCGATGACGAAT 59.494 61.111 0.00 0.00 42.66 3.34
1697 2059 4.327898 CGCACCAATTTGGATCAATTCAAG 59.672 41.667 22.19 0.56 40.96 3.02
1738 2100 3.396260 ACTACATTGCACCAAGTACGT 57.604 42.857 0.00 0.00 0.00 3.57
1744 2106 2.809119 CCAACGTACTACATTGCACCAA 59.191 45.455 0.00 0.00 0.00 3.67
1787 2149 5.123227 CACAATTCACCTACCGATACCAAT 58.877 41.667 0.00 0.00 0.00 3.16
1855 2217 2.589798 GCAACCAGCCGTACACTATA 57.410 50.000 0.00 0.00 37.23 1.31
1886 2248 6.068670 AGTACTTAAAACCAGGTGCATTTCT 58.931 36.000 0.00 0.00 0.00 2.52
1913 2275 4.359105 TCTTATATTATGGGACGGAGGGG 58.641 47.826 0.00 0.00 0.00 4.79
1914 2276 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
1915 2277 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
1916 2278 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
1917 2279 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
1918 2280 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
1919 2281 5.118664 CACAACGCTCTTATATTATGGGACG 59.881 44.000 0.00 0.00 0.00 4.79
1920 2282 5.989777 ACACAACGCTCTTATATTATGGGAC 59.010 40.000 0.00 0.00 0.00 4.46
1921 2283 6.169557 ACACAACGCTCTTATATTATGGGA 57.830 37.500 0.00 0.00 0.00 4.37
1922 2284 7.956420 TTACACAACGCTCTTATATTATGGG 57.044 36.000 0.00 0.00 0.00 4.00
1923 2285 8.988934 ACATTACACAACGCTCTTATATTATGG 58.011 33.333 0.00 0.00 0.00 2.74
1930 2292 9.389570 GTTTTTAACATTACACAACGCTCTTAT 57.610 29.630 0.00 0.00 0.00 1.73
1931 2293 7.583401 CGTTTTTAACATTACACAACGCTCTTA 59.417 33.333 0.00 0.00 30.35 2.10
1932 2294 6.412653 CGTTTTTAACATTACACAACGCTCTT 59.587 34.615 0.00 0.00 30.35 2.85
1933 2295 5.905181 CGTTTTTAACATTACACAACGCTCT 59.095 36.000 0.00 0.00 30.35 4.09
1934 2296 6.107094 CGTTTTTAACATTACACAACGCTC 57.893 37.500 0.00 0.00 30.35 5.03
1937 2299 5.905181 AGAGCGTTTTTAACATTACACAACG 59.095 36.000 0.00 0.00 38.78 4.10
1938 2300 7.673810 AAGAGCGTTTTTAACATTACACAAC 57.326 32.000 0.00 0.00 0.00 3.32
1947 2309 9.616156 TCCCATAATATAAGAGCGTTTTTAACA 57.384 29.630 0.00 0.00 0.00 2.41
1948 2310 9.874215 GTCCCATAATATAAGAGCGTTTTTAAC 57.126 33.333 0.00 0.00 0.00 2.01
1949 2311 8.767085 CGTCCCATAATATAAGAGCGTTTTTAA 58.233 33.333 0.00 0.00 0.00 1.52
1950 2312 7.385752 CCGTCCCATAATATAAGAGCGTTTTTA 59.614 37.037 0.00 0.00 0.00 1.52
1951 2313 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
1952 2314 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
1953 2315 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
1954 2316 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
1955 2317 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
1956 2318 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
1957 2319 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
1958 2320 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
1959 2321 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1960 2322 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1961 2323 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1962 2324 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1963 2325 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1964 2326 3.816842 GCTACTCCCTCCGTCCCATAATA 60.817 52.174 0.00 0.00 0.00 0.98
1965 2327 2.890814 CTACTCCCTCCGTCCCATAAT 58.109 52.381 0.00 0.00 0.00 1.28
1966 2328 1.756690 GCTACTCCCTCCGTCCCATAA 60.757 57.143 0.00 0.00 0.00 1.90
1967 2329 0.178970 GCTACTCCCTCCGTCCCATA 60.179 60.000 0.00 0.00 0.00 2.74
1968 2330 1.457831 GCTACTCCCTCCGTCCCAT 60.458 63.158 0.00 0.00 0.00 4.00
1969 2331 2.043248 GCTACTCCCTCCGTCCCA 60.043 66.667 0.00 0.00 0.00 4.37
1970 2332 2.128507 CAGCTACTCCCTCCGTCCC 61.129 68.421 0.00 0.00 0.00 4.46
1971 2333 1.076923 TCAGCTACTCCCTCCGTCC 60.077 63.158 0.00 0.00 0.00 4.79
1972 2334 0.394625 AGTCAGCTACTCCCTCCGTC 60.395 60.000 0.00 0.00 30.33 4.79
1973 2335 0.681564 CAGTCAGCTACTCCCTCCGT 60.682 60.000 0.00 0.00 35.76 4.69
1974 2336 0.681564 ACAGTCAGCTACTCCCTCCG 60.682 60.000 0.00 0.00 35.76 4.63
1975 2337 0.820871 CACAGTCAGCTACTCCCTCC 59.179 60.000 0.00 0.00 35.76 4.30
1976 2338 0.174617 GCACAGTCAGCTACTCCCTC 59.825 60.000 0.00 0.00 35.76 4.30
1977 2339 1.261238 GGCACAGTCAGCTACTCCCT 61.261 60.000 0.00 0.00 35.76 4.20
1978 2340 1.219393 GGCACAGTCAGCTACTCCC 59.781 63.158 0.00 0.00 35.76 4.30
1979 2341 0.610687 AAGGCACAGTCAGCTACTCC 59.389 55.000 0.00 0.00 35.76 3.85
1980 2342 2.464157 AAAGGCACAGTCAGCTACTC 57.536 50.000 0.00 0.00 35.76 2.59
2050 2413 6.377327 TTCTCACAGACCAAAAATTCAGAC 57.623 37.500 0.00 0.00 0.00 3.51
2091 2454 9.397280 TCGTCCATCAAACATATTAATTACCAA 57.603 29.630 0.00 0.00 0.00 3.67
2268 2710 1.741770 CCGCACACCCAAGAGTAGC 60.742 63.158 0.00 0.00 0.00 3.58
2275 2717 2.360600 GCATACCCGCACACCCAA 60.361 61.111 0.00 0.00 0.00 4.12
2285 2727 7.067737 TGCCTAAATTTAGTTTACAGCATACCC 59.932 37.037 20.99 0.00 34.21 3.69
2304 2746 3.055385 AGCACGAGGAACTATTGCCTAAA 60.055 43.478 0.00 0.00 44.65 1.85
2313 2755 5.710513 TTTGTAAGTAGCACGAGGAACTA 57.289 39.130 0.00 0.00 41.55 2.24
2321 2763 7.127042 TGTGTACAAATTTTGTAAGTAGCACG 58.873 34.615 20.53 0.00 46.72 5.34
2381 2824 1.747709 GACAGGATGCATCACAGCTT 58.252 50.000 27.25 5.68 42.53 3.74
2383 2826 2.012237 CGACAGGATGCATCACAGC 58.988 57.895 27.25 10.57 42.53 4.40
2386 2829 2.012237 CTGCGACAGGATGCATCAC 58.988 57.895 27.25 16.52 42.53 3.06
2439 2884 9.206870 CAAGGTCATATTTGTTGCATTTTACTT 57.793 29.630 0.00 0.00 0.00 2.24
2494 2939 6.121776 AGTATGGTATGTTGTGTTCTGGAA 57.878 37.500 0.00 0.00 0.00 3.53
2496 2941 5.354234 GGAAGTATGGTATGTTGTGTTCTGG 59.646 44.000 0.00 0.00 0.00 3.86
2516 2961 8.239314 GGATATGTTGCATATGTATGTTGGAAG 58.761 37.037 4.29 0.00 36.11 3.46
2526 2971 7.886629 AAGAGTTTGGATATGTTGCATATGT 57.113 32.000 4.29 0.00 0.00 2.29
2527 2972 9.060347 AGTAAGAGTTTGGATATGTTGCATATG 57.940 33.333 6.38 0.00 0.00 1.78
2528 2973 9.632638 AAGTAAGAGTTTGGATATGTTGCATAT 57.367 29.630 1.70 1.70 0.00 1.78
2529 2974 9.461312 AAAGTAAGAGTTTGGATATGTTGCATA 57.539 29.630 0.00 0.00 0.00 3.14
2530 2975 7.944729 AAGTAAGAGTTTGGATATGTTGCAT 57.055 32.000 0.00 0.00 0.00 3.96
2531 2976 7.759489 AAAGTAAGAGTTTGGATATGTTGCA 57.241 32.000 0.00 0.00 0.00 4.08
2532 2977 8.082242 ACAAAAGTAAGAGTTTGGATATGTTGC 58.918 33.333 0.00 0.00 38.73 4.17
2533 2978 9.965824 AACAAAAGTAAGAGTTTGGATATGTTG 57.034 29.630 0.00 0.00 38.73 3.33
2744 3189 6.144078 AGTACATTTGAAACACAACCCTTC 57.856 37.500 0.00 0.00 38.29 3.46
2746 3191 4.583073 GGAGTACATTTGAAACACAACCCT 59.417 41.667 0.00 0.00 38.29 4.34
2819 3264 4.023963 TCCGCAGATCTAGATAGAACAACG 60.024 45.833 4.89 3.40 35.69 4.10
3160 3605 1.400142 CAAACAACGTGGCAGTGAAGA 59.600 47.619 0.00 0.00 0.00 2.87
3169 3614 0.383949 CAGTTCCCCAAACAACGTGG 59.616 55.000 0.00 0.00 40.56 4.94
3208 3653 7.696872 GCATTCATGAATAGATCGAATGGATTG 59.303 37.037 20.32 5.51 41.96 2.67
3241 3686 7.545965 GTCTAAGAGCAGAGCAACTATGTTAAA 59.454 37.037 0.00 0.00 0.00 1.52
3473 3920 4.041691 ACCACCAGTAACTTCTGCAGTATT 59.958 41.667 14.67 9.13 32.94 1.89
3726 4174 9.469807 CCTGCAATGTAGTTATTGTTTACAAAA 57.530 29.630 0.00 0.00 39.62 2.44
3857 4305 7.229506 ACTCCAGTTATGAGAACAAAAAGAAGG 59.770 37.037 0.00 0.00 33.95 3.46
3876 4324 8.147244 AGACACTAATGGTTAATTACTCCAGT 57.853 34.615 12.28 11.98 34.62 4.00
3887 4335 8.598916 TCACCAGATTTTAGACACTAATGGTTA 58.401 33.333 10.09 3.36 36.41 2.85
4285 4896 2.044123 AGCCAATAACTGTAGCCAGC 57.956 50.000 0.00 0.00 42.81 4.85
4367 4978 9.761504 TGAAAAACAAAAATATCATGCTCTTGA 57.238 25.926 0.00 0.00 0.00 3.02
4390 5001 5.046304 ACTCCTAATGAGCAAAGTAGCTGAA 60.046 40.000 0.00 0.00 46.75 3.02
4573 5191 6.818644 AGATCACAAGTATGTAATGTCACCAC 59.181 38.462 0.00 0.00 37.82 4.16
4579 5197 6.042777 CGTGGAGATCACAAGTATGTAATGT 58.957 40.000 0.00 0.00 46.36 2.71
4718 5337 7.099764 ACAGATTCTAACAAAGATGACGTGAT 58.900 34.615 0.00 0.00 33.05 3.06
4759 5378 4.260375 GCGCTGTCGATAAATCAATCAGTT 60.260 41.667 0.00 0.00 38.10 3.16
4783 5402 4.641396 AGGAAACGATCAGAACATCACAA 58.359 39.130 0.00 0.00 0.00 3.33
4791 5410 5.874810 CCAATTACTGAGGAAACGATCAGAA 59.125 40.000 9.06 0.69 44.68 3.02
4799 5418 3.127721 GCTGCTCCAATTACTGAGGAAAC 59.872 47.826 0.00 0.00 0.00 2.78
4971 5590 2.693069 ACCTGAACAAGCTGATCTTCG 58.307 47.619 0.00 0.00 31.27 3.79
5045 5664 5.879763 TCTGAATGAAGGAGGACATCAAAA 58.120 37.500 0.00 0.00 0.00 2.44
5076 5695 6.831976 AGTTTATGTGAAGGAGAAGAACAGT 58.168 36.000 0.00 0.00 0.00 3.55
5088 5707 7.010183 ACGTCGGATCATTTAGTTTATGTGAAG 59.990 37.037 0.00 0.00 0.00 3.02
5162 5781 5.814764 ATGCAGATCAAATCACTTCAGTC 57.185 39.130 0.00 0.00 0.00 3.51
5315 5934 3.686016 CCTGAAGAATCGGGGAAAAAGA 58.314 45.455 0.00 0.00 46.80 2.52
5366 5985 3.531538 TGGCCTTCTTTGCTACTATTCG 58.468 45.455 3.32 0.00 0.00 3.34
5548 6167 2.697751 AGCATCTACTCGCTCATTTCCT 59.302 45.455 0.00 0.00 31.16 3.36
5600 6219 4.740822 GCACCCGGGCCTGTCAAT 62.741 66.667 24.08 0.00 0.00 2.57
5611 6230 2.000215 GAATTTTAGCCCCGCACCCG 62.000 60.000 0.00 0.00 0.00 5.28
5699 6318 6.966435 ACTTTTCTGTGTTTCACAAATTGG 57.034 33.333 0.00 0.00 44.08 3.16
5701 6320 7.547722 GGGTAACTTTTCTGTGTTTCACAAATT 59.452 33.333 4.21 0.00 44.08 1.82
5807 6429 0.543277 CAGGCATTAGAGGAGGCACA 59.457 55.000 0.00 0.00 0.00 4.57
5808 6430 0.817229 GCAGGCATTAGAGGAGGCAC 60.817 60.000 0.00 0.00 0.00 5.01
5948 6573 5.163184 TGGTTAAATTGACTGGGTGTGAGTA 60.163 40.000 0.00 0.00 0.00 2.59
5983 6608 6.176975 TCACCGCAAACTTTAACATAGATG 57.823 37.500 0.00 0.00 0.00 2.90
5990 6615 2.031420 GGACCTCACCGCAAACTTTAAC 60.031 50.000 0.00 0.00 0.00 2.01
6091 6716 7.417116 ATGAGAAACATTTTGCTTATAGCAGGG 60.417 37.037 1.29 0.00 43.87 4.45
6143 6768 1.827399 TATAAGCTAGCTGCCCGCCC 61.827 60.000 20.16 0.00 44.23 6.13
6188 6938 1.649321 ACTGTGAGGAGGCTGATTGA 58.351 50.000 0.00 0.00 0.00 2.57
6195 6945 5.611374 TGCTTATTATAACTGTGAGGAGGC 58.389 41.667 0.00 0.00 0.00 4.70
6324 7078 3.726557 AGAAATCACAGCATCCCAGAA 57.273 42.857 0.00 0.00 0.00 3.02
6325 7079 3.009363 TGAAGAAATCACAGCATCCCAGA 59.991 43.478 0.00 0.00 31.50 3.86
6326 7080 3.349927 TGAAGAAATCACAGCATCCCAG 58.650 45.455 0.00 0.00 31.50 4.45
6328 7082 3.129988 CCTTGAAGAAATCACAGCATCCC 59.870 47.826 0.00 0.00 37.92 3.85
6332 7087 4.261741 GCTTTCCTTGAAGAAATCACAGCA 60.262 41.667 0.00 0.00 37.92 4.41
6348 7103 2.754946 TTGAATCGTACGGCTTTCCT 57.245 45.000 16.52 0.00 0.00 3.36
6403 7164 8.783660 ATAGTGATCATGAAAAGTAGTCCCTA 57.216 34.615 0.00 0.00 0.00 3.53
6434 7195 8.236586 TGAAGATTCATGATTCCTTAAACGTTG 58.763 33.333 12.82 0.00 31.01 4.10
6443 7204 5.705397 TGACCTGAAGATTCATGATTCCT 57.295 39.130 12.82 1.59 36.46 3.36
6478 7239 1.678970 GCAGGGGGTGTGAACCATC 60.679 63.158 0.00 0.00 0.00 3.51
6483 7244 3.306902 TTTTTGCAGGGGGTGTGAA 57.693 47.368 0.00 0.00 0.00 3.18
6503 7264 3.766591 TGTGTGGTGTGAACCATCTTTTT 59.233 39.130 0.11 0.00 42.41 1.94
6504 7265 3.130340 GTGTGTGGTGTGAACCATCTTTT 59.870 43.478 0.11 0.00 42.41 2.27
6505 7266 2.687935 GTGTGTGGTGTGAACCATCTTT 59.312 45.455 0.11 0.00 42.41 2.52
6506 7267 2.297701 GTGTGTGGTGTGAACCATCTT 58.702 47.619 0.11 0.00 42.41 2.40
6507 7268 1.211703 TGTGTGTGGTGTGAACCATCT 59.788 47.619 0.11 0.00 42.41 2.90
6508 7269 1.603802 CTGTGTGTGGTGTGAACCATC 59.396 52.381 0.11 0.00 42.41 3.51
6509 7270 1.064758 ACTGTGTGTGGTGTGAACCAT 60.065 47.619 0.11 0.00 42.41 3.55
6510 7271 0.326595 ACTGTGTGTGGTGTGAACCA 59.673 50.000 0.00 0.00 37.46 3.67
6511 7272 0.732571 CACTGTGTGTGGTGTGAACC 59.267 55.000 0.00 0.00 42.68 3.62
6565 7330 3.084579 CGCTTCGACATGCACCTC 58.915 61.111 0.00 0.00 0.00 3.85
6593 7362 0.107831 TGCGCTTGTTGTTAGGAGGT 59.892 50.000 9.73 0.00 0.00 3.85
6603 7372 0.179113 CACCAAGGTTTGCGCTTGTT 60.179 50.000 9.73 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.