Multiple sequence alignment - TraesCS3B01G436700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G436700 chr3B 100.000 2276 0 0 1 2276 675150157 675147882 0.000000e+00 4204
1 TraesCS3B01G436700 chr1B 98.182 1100 19 1 206 1304 613239519 613238420 0.000000e+00 1919
2 TraesCS3B01G436700 chr1B 94.526 1096 60 0 206 1301 282309762 282310857 0.000000e+00 1692
3 TraesCS3B01G436700 chr1B 99.231 130 1 0 1 130 613239647 613239518 3.780000e-58 235
4 TraesCS3B01G436700 chr1B 94.615 130 7 0 1 130 282309634 282309763 3.830000e-48 202
5 TraesCS3B01G436700 chr2B 96.633 1099 35 2 209 1305 698957284 698956186 0.000000e+00 1823
6 TraesCS3B01G436700 chr2B 97.692 130 3 0 1 130 698957415 698957286 8.180000e-55 224
7 TraesCS3B01G436700 chr5D 94.636 1100 58 1 206 1304 565330702 565329603 0.000000e+00 1703
8 TraesCS3B01G436700 chr5D 81.569 1096 186 15 206 1293 532832789 532831702 0.000000e+00 891
9 TraesCS3B01G436700 chr5D 96.923 130 4 0 1 130 565330830 565330701 3.810000e-53 219
10 TraesCS3B01G436700 chr6D 87.251 1106 130 11 206 1304 48449079 48450180 0.000000e+00 1251
11 TraesCS3B01G436700 chr7A 85.222 1103 155 7 206 1305 43470240 43469143 0.000000e+00 1127
12 TraesCS3B01G436700 chr3A 89.315 861 51 22 1421 2252 648242386 648243234 0.000000e+00 1042
13 TraesCS3B01G436700 chr3D 88.345 858 39 26 1421 2252 512667478 512668300 0.000000e+00 974
14 TraesCS3B01G436700 chr5A 82.146 1109 186 12 206 1310 367708777 367709877 0.000000e+00 941
15 TraesCS3B01G436700 chr2A 80.797 1104 200 10 206 1303 95257146 95256049 0.000000e+00 854
16 TraesCS3B01G436700 chr4D 94.615 130 7 0 1 130 44915088 44914959 3.830000e-48 202


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G436700 chr3B 675147882 675150157 2275 True 4204.0 4204 100.0000 1 2276 1 chr3B.!!$R1 2275
1 TraesCS3B01G436700 chr1B 613238420 613239647 1227 True 1077.0 1919 98.7065 1 1304 2 chr1B.!!$R1 1303
2 TraesCS3B01G436700 chr1B 282309634 282310857 1223 False 947.0 1692 94.5705 1 1301 2 chr1B.!!$F1 1300
3 TraesCS3B01G436700 chr2B 698956186 698957415 1229 True 1023.5 1823 97.1625 1 1305 2 chr2B.!!$R1 1304
4 TraesCS3B01G436700 chr5D 565329603 565330830 1227 True 961.0 1703 95.7795 1 1304 2 chr5D.!!$R2 1303
5 TraesCS3B01G436700 chr5D 532831702 532832789 1087 True 891.0 891 81.5690 206 1293 1 chr5D.!!$R1 1087
6 TraesCS3B01G436700 chr6D 48449079 48450180 1101 False 1251.0 1251 87.2510 206 1304 1 chr6D.!!$F1 1098
7 TraesCS3B01G436700 chr7A 43469143 43470240 1097 True 1127.0 1127 85.2220 206 1305 1 chr7A.!!$R1 1099
8 TraesCS3B01G436700 chr3A 648242386 648243234 848 False 1042.0 1042 89.3150 1421 2252 1 chr3A.!!$F1 831
9 TraesCS3B01G436700 chr3D 512667478 512668300 822 False 974.0 974 88.3450 1421 2252 1 chr3D.!!$F1 831
10 TraesCS3B01G436700 chr5A 367708777 367709877 1100 False 941.0 941 82.1460 206 1310 1 chr5A.!!$F1 1104
11 TraesCS3B01G436700 chr2A 95256049 95257146 1097 True 854.0 854 80.7970 206 1303 1 chr2A.!!$R1 1097

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 130 1.820519 TGCTTGGGCACATGAGAAATC 59.179 47.619 5.94 0.0 44.28 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1353 1365 0.036765 ACCAACGCGCCTTGATTAGA 60.037 50.0 18.93 0.0 0.0 2.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 129 1.927487 TGCTTGGGCACATGAGAAAT 58.073 45.000 5.94 0.00 44.28 2.17
129 130 1.820519 TGCTTGGGCACATGAGAAATC 59.179 47.619 5.94 0.00 44.28 2.17
130 131 2.097825 GCTTGGGCACATGAGAAATCT 58.902 47.619 5.94 0.00 38.54 2.40
131 132 2.494870 GCTTGGGCACATGAGAAATCTT 59.505 45.455 5.94 0.00 38.54 2.40
132 133 3.428589 GCTTGGGCACATGAGAAATCTTC 60.429 47.826 5.94 0.00 38.54 2.87
133 134 3.726557 TGGGCACATGAGAAATCTTCT 57.273 42.857 0.00 0.00 44.21 2.85
134 135 4.038271 TGGGCACATGAGAAATCTTCTT 57.962 40.909 0.00 0.00 40.87 2.52
135 136 4.012374 TGGGCACATGAGAAATCTTCTTC 58.988 43.478 0.00 0.00 40.87 2.87
136 137 4.263639 TGGGCACATGAGAAATCTTCTTCT 60.264 41.667 0.00 0.00 40.87 2.85
137 138 4.704057 GGGCACATGAGAAATCTTCTTCTT 59.296 41.667 0.00 0.00 40.87 2.52
138 139 5.163673 GGGCACATGAGAAATCTTCTTCTTC 60.164 44.000 0.00 0.00 40.87 2.87
139 140 5.647225 GGCACATGAGAAATCTTCTTCTTCT 59.353 40.000 0.00 0.00 40.87 2.85
140 141 6.150809 GGCACATGAGAAATCTTCTTCTTCTT 59.849 38.462 0.00 0.00 40.87 2.52
141 142 7.242783 GCACATGAGAAATCTTCTTCTTCTTC 58.757 38.462 0.00 0.00 40.87 2.87
142 143 7.119553 GCACATGAGAAATCTTCTTCTTCTTCT 59.880 37.037 0.00 0.00 40.87 2.85
143 144 9.001542 CACATGAGAAATCTTCTTCTTCTTCTT 57.998 33.333 0.00 0.00 40.87 2.52
144 145 9.218440 ACATGAGAAATCTTCTTCTTCTTCTTC 57.782 33.333 0.00 0.00 40.87 2.87
145 146 9.439500 CATGAGAAATCTTCTTCTTCTTCTTCT 57.561 33.333 0.00 0.00 40.87 2.85
147 148 9.487790 TGAGAAATCTTCTTCTTCTTCTTCTTC 57.512 33.333 0.00 0.00 40.87 2.87
148 149 9.710900 GAGAAATCTTCTTCTTCTTCTTCTTCT 57.289 33.333 0.00 0.00 40.87 2.85
153 154 9.710900 ATCTTCTTCTTCTTCTTCTTCTTCTTC 57.289 33.333 0.00 0.00 0.00 2.87
154 155 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
155 156 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
156 157 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
157 158 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
158 159 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
159 160 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
160 161 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
161 162 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
162 163 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
163 164 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
164 165 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
165 166 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
166 167 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
167 168 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
168 169 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
169 170 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
170 171 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
171 172 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
172 173 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
173 174 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
174 175 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
175 176 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
176 177 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
177 178 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
178 179 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
179 180 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
180 181 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
181 182 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
182 183 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
183 184 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
184 185 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
185 186 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
186 187 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
187 188 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
188 189 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
189 190 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
190 191 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
191 192 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
192 193 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
193 194 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
194 195 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
195 196 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
196 197 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
197 198 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
198 199 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
199 200 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
200 201 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
201 202 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
202 203 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
203 204 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
204 205 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
287 289 3.774216 GCTCTAGATGAGGGGCAGATTAT 59.226 47.826 0.00 0.00 42.87 1.28
290 292 2.894731 AGATGAGGGGCAGATTATCGA 58.105 47.619 0.00 0.00 0.00 3.59
298 300 3.531538 GGGCAGATTATCGACACTTCAA 58.468 45.455 0.00 0.00 0.00 2.69
656 659 2.509131 TGTGGGCAATATGGATGTCTCA 59.491 45.455 0.00 0.00 0.00 3.27
742 745 7.854166 GAGGATCTAGCCATTCTGGATATAT 57.146 40.000 0.00 0.00 42.24 0.86
1262 1271 3.134401 CTGACTGCTCAGCGAATGT 57.866 52.632 0.00 0.00 37.72 2.71
1295 1307 0.251832 AGCTCTCTGAAGTTCCCCGA 60.252 55.000 0.00 0.00 0.00 5.14
1317 1329 2.801859 AAAAAGTGTGGTGGGACGG 58.198 52.632 0.00 0.00 0.00 4.79
1318 1330 0.256464 AAAAAGTGTGGTGGGACGGA 59.744 50.000 0.00 0.00 0.00 4.69
1319 1331 0.476771 AAAAGTGTGGTGGGACGGAT 59.523 50.000 0.00 0.00 0.00 4.18
1320 1332 0.476771 AAAGTGTGGTGGGACGGATT 59.523 50.000 0.00 0.00 0.00 3.01
1321 1333 1.354101 AAGTGTGGTGGGACGGATTA 58.646 50.000 0.00 0.00 0.00 1.75
1322 1334 0.902531 AGTGTGGTGGGACGGATTAG 59.097 55.000 0.00 0.00 0.00 1.73
1323 1335 0.743345 GTGTGGTGGGACGGATTAGC 60.743 60.000 0.00 0.00 0.00 3.09
1324 1336 1.520787 GTGGTGGGACGGATTAGCG 60.521 63.158 0.00 0.00 0.00 4.26
1325 1337 2.108362 GGTGGGACGGATTAGCGG 59.892 66.667 0.00 0.00 0.00 5.52
1326 1338 2.588034 GTGGGACGGATTAGCGGC 60.588 66.667 0.00 0.00 0.00 6.53
1327 1339 4.215742 TGGGACGGATTAGCGGCG 62.216 66.667 0.51 0.51 0.00 6.46
1329 1341 4.884257 GGACGGATTAGCGGCGCA 62.884 66.667 35.02 15.48 0.00 6.09
1330 1342 2.661866 GACGGATTAGCGGCGCAT 60.662 61.111 35.02 20.14 0.00 4.73
1331 1343 2.203015 ACGGATTAGCGGCGCATT 60.203 55.556 35.02 17.37 0.00 3.56
1332 1344 0.942410 GACGGATTAGCGGCGCATTA 60.942 55.000 35.02 18.59 0.00 1.90
1333 1345 1.219522 ACGGATTAGCGGCGCATTAC 61.220 55.000 35.02 20.78 0.00 1.89
1334 1346 0.944311 CGGATTAGCGGCGCATTACT 60.944 55.000 35.02 15.69 0.00 2.24
1335 1347 0.512952 GGATTAGCGGCGCATTACTG 59.487 55.000 35.02 0.00 0.00 2.74
1336 1348 0.110644 GATTAGCGGCGCATTACTGC 60.111 55.000 35.02 12.20 45.31 4.40
1354 1366 4.801624 GACCCGCCCCGTACGTTC 62.802 72.222 15.21 1.62 0.00 3.95
1356 1368 3.140141 CCCGCCCCGTACGTTCTA 61.140 66.667 15.21 0.00 0.00 2.10
1357 1369 2.709883 CCCGCCCCGTACGTTCTAA 61.710 63.158 15.21 0.00 0.00 2.10
1358 1370 1.438814 CCGCCCCGTACGTTCTAAT 59.561 57.895 15.21 0.00 0.00 1.73
1359 1371 0.595825 CCGCCCCGTACGTTCTAATC 60.596 60.000 15.21 0.00 0.00 1.75
1360 1372 0.101040 CGCCCCGTACGTTCTAATCA 59.899 55.000 15.21 0.00 0.00 2.57
1361 1373 1.469595 CGCCCCGTACGTTCTAATCAA 60.470 52.381 15.21 0.00 0.00 2.57
1362 1374 2.199236 GCCCCGTACGTTCTAATCAAG 58.801 52.381 15.21 0.00 0.00 3.02
1363 1375 2.817901 CCCCGTACGTTCTAATCAAGG 58.182 52.381 15.21 3.74 0.00 3.61
1364 1376 2.199236 CCCGTACGTTCTAATCAAGGC 58.801 52.381 15.21 0.00 0.00 4.35
1365 1377 1.850441 CCGTACGTTCTAATCAAGGCG 59.150 52.381 15.21 0.00 0.00 5.52
1366 1378 1.254570 CGTACGTTCTAATCAAGGCGC 59.745 52.381 7.22 0.00 0.00 6.53
1367 1379 1.254570 GTACGTTCTAATCAAGGCGCG 59.745 52.381 0.00 0.00 0.00 6.86
1368 1380 0.389426 ACGTTCTAATCAAGGCGCGT 60.389 50.000 8.43 0.00 0.00 6.01
1369 1381 0.719465 CGTTCTAATCAAGGCGCGTT 59.281 50.000 10.00 10.00 0.00 4.84
1370 1382 1.526986 CGTTCTAATCAAGGCGCGTTG 60.527 52.381 31.35 31.35 0.00 4.10
1371 1383 1.083489 TTCTAATCAAGGCGCGTTGG 58.917 50.000 34.54 22.07 0.00 3.77
1372 1384 0.036765 TCTAATCAAGGCGCGTTGGT 60.037 50.000 34.54 29.00 0.00 3.67
1373 1385 0.802494 CTAATCAAGGCGCGTTGGTT 59.198 50.000 34.99 34.99 34.99 3.67
1374 1386 0.519519 TAATCAAGGCGCGTTGGTTG 59.480 50.000 37.88 19.60 32.85 3.77
1375 1387 1.169661 AATCAAGGCGCGTTGGTTGA 61.170 50.000 33.34 20.13 29.30 3.18
1376 1388 1.577328 ATCAAGGCGCGTTGGTTGAG 61.577 55.000 34.54 14.69 32.64 3.02
1377 1389 2.978010 AAGGCGCGTTGGTTGAGG 60.978 61.111 15.53 0.00 0.00 3.86
1380 1392 3.423154 GCGCGTTGGTTGAGGGAG 61.423 66.667 8.43 0.00 0.00 4.30
1381 1393 3.423154 CGCGTTGGTTGAGGGAGC 61.423 66.667 0.00 0.00 0.00 4.70
1382 1394 3.423154 GCGTTGGTTGAGGGAGCG 61.423 66.667 0.00 0.00 0.00 5.03
1383 1395 2.342279 CGTTGGTTGAGGGAGCGA 59.658 61.111 0.00 0.00 0.00 4.93
1384 1396 2.027625 CGTTGGTTGAGGGAGCGAC 61.028 63.158 0.00 0.00 0.00 5.19
1385 1397 2.027625 GTTGGTTGAGGGAGCGACG 61.028 63.158 0.00 0.00 0.00 5.12
1386 1398 3.876589 TTGGTTGAGGGAGCGACGC 62.877 63.158 13.03 13.03 0.00 5.19
1387 1399 4.373116 GGTTGAGGGAGCGACGCA 62.373 66.667 23.70 0.00 0.00 5.24
1388 1400 3.112709 GTTGAGGGAGCGACGCAC 61.113 66.667 23.70 16.32 0.00 5.34
1389 1401 4.373116 TTGAGGGAGCGACGCACC 62.373 66.667 25.79 25.79 38.54 5.01
1391 1403 4.803426 GAGGGAGCGACGCACCTG 62.803 72.222 32.08 0.00 39.22 4.00
1405 1417 2.187946 CCTGGCCAAGGCGAGTAG 59.812 66.667 19.60 8.77 43.85 2.57
1406 1418 2.660064 CCTGGCCAAGGCGAGTAGT 61.660 63.158 19.60 0.00 43.85 2.73
1407 1419 1.327690 CCTGGCCAAGGCGAGTAGTA 61.328 60.000 19.60 0.00 43.85 1.82
1408 1420 0.103208 CTGGCCAAGGCGAGTAGTAG 59.897 60.000 7.01 0.00 41.12 2.57
1409 1421 0.613853 TGGCCAAGGCGAGTAGTAGT 60.614 55.000 0.61 0.00 43.06 2.73
1410 1422 1.341285 TGGCCAAGGCGAGTAGTAGTA 60.341 52.381 0.61 0.00 43.06 1.82
1411 1423 1.337387 GGCCAAGGCGAGTAGTAGTAG 59.663 57.143 4.80 0.00 43.06 2.57
1412 1424 2.022934 GCCAAGGCGAGTAGTAGTAGT 58.977 52.381 0.00 0.00 0.00 2.73
1413 1425 2.033174 GCCAAGGCGAGTAGTAGTAGTC 59.967 54.545 0.00 2.68 0.00 2.59
1418 1430 0.857935 CGAGTAGTAGTAGTCGGCGG 59.142 60.000 22.06 0.07 44.95 6.13
1419 1431 1.804372 CGAGTAGTAGTAGTCGGCGGT 60.804 57.143 22.06 0.00 44.95 5.68
1441 1453 4.379243 CCGTCCGACAGCTTGCCT 62.379 66.667 0.00 0.00 0.00 4.75
1580 1601 2.831284 ACCCACACGGTTGTTGGC 60.831 61.111 0.00 0.00 45.36 4.52
2043 2091 7.629157 TGACCATATGTTGTTCTATCCAAGAA 58.371 34.615 1.24 0.00 42.07 2.52
2188 2242 3.211045 CCAAGAAAAAGGAGGACGTTCA 58.789 45.455 0.00 0.00 0.00 3.18
2245 2299 2.942376 TGATCGGCATTTTTCTACGCAT 59.058 40.909 0.00 0.00 0.00 4.73
2252 2306 5.118510 CGGCATTTTTCTACGCATTTTCTTT 59.881 36.000 0.00 0.00 0.00 2.52
2253 2307 6.306837 CGGCATTTTTCTACGCATTTTCTTTA 59.693 34.615 0.00 0.00 0.00 1.85
2254 2308 7.148885 CGGCATTTTTCTACGCATTTTCTTTAA 60.149 33.333 0.00 0.00 0.00 1.52
2255 2309 8.491950 GGCATTTTTCTACGCATTTTCTTTAAA 58.508 29.630 0.00 0.00 0.00 1.52
2256 2310 9.301606 GCATTTTTCTACGCATTTTCTTTAAAC 57.698 29.630 0.00 0.00 0.00 2.01
2257 2311 9.498433 CATTTTTCTACGCATTTTCTTTAAACG 57.502 29.630 0.00 0.00 0.00 3.60
2258 2312 8.617761 TTTTTCTACGCATTTTCTTTAAACGT 57.382 26.923 3.72 3.72 34.24 3.99
2259 2313 9.713740 TTTTTCTACGCATTTTCTTTAAACGTA 57.286 25.926 0.00 5.30 32.70 3.57
2260 2314 9.713740 TTTTCTACGCATTTTCTTTAAACGTAA 57.286 25.926 0.00 0.00 33.24 3.18
2261 2315 8.698172 TTCTACGCATTTTCTTTAAACGTAAC 57.302 30.769 0.00 0.00 33.24 2.50
2262 2316 7.290118 TCTACGCATTTTCTTTAAACGTAACC 58.710 34.615 0.00 0.00 33.24 2.85
2263 2317 6.063640 ACGCATTTTCTTTAAACGTAACCT 57.936 33.333 0.00 0.00 29.80 3.50
2264 2318 6.497437 ACGCATTTTCTTTAAACGTAACCTT 58.503 32.000 0.00 0.00 29.80 3.50
2265 2319 6.974048 ACGCATTTTCTTTAAACGTAACCTTT 59.026 30.769 0.00 0.00 29.80 3.11
2266 2320 7.166307 ACGCATTTTCTTTAAACGTAACCTTTC 59.834 33.333 0.00 0.00 29.80 2.62
2267 2321 7.377662 CGCATTTTCTTTAAACGTAACCTTTCT 59.622 33.333 0.00 0.00 0.00 2.52
2268 2322 8.688184 GCATTTTCTTTAAACGTAACCTTTCTC 58.312 33.333 0.00 0.00 0.00 2.87
2269 2323 9.177304 CATTTTCTTTAAACGTAACCTTTCTCC 57.823 33.333 0.00 0.00 0.00 3.71
2270 2324 8.510243 TTTTCTTTAAACGTAACCTTTCTCCT 57.490 30.769 0.00 0.00 0.00 3.69
2271 2325 8.510243 TTTCTTTAAACGTAACCTTTCTCCTT 57.490 30.769 0.00 0.00 0.00 3.36
2272 2326 8.510243 TTCTTTAAACGTAACCTTTCTCCTTT 57.490 30.769 0.00 0.00 0.00 3.11
2273 2327 8.510243 TCTTTAAACGTAACCTTTCTCCTTTT 57.490 30.769 0.00 0.00 0.00 2.27
2274 2328 8.615211 TCTTTAAACGTAACCTTTCTCCTTTTC 58.385 33.333 0.00 0.00 0.00 2.29
2275 2329 8.510243 TTTAAACGTAACCTTTCTCCTTTTCT 57.490 30.769 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 129 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
129 130 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
130 131 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
131 132 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
132 133 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
133 134 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
134 135 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
135 136 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
136 137 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
137 138 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
138 139 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
139 140 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
140 141 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
141 142 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
142 143 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
143 144 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
144 145 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
145 146 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
146 147 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
147 148 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
148 149 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
149 150 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
150 151 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
151 152 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
152 153 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
153 154 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
154 155 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
155 156 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
156 157 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
157 158 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
158 159 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
159 160 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
160 161 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
161 162 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
162 163 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
163 164 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
164 165 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
165 166 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
166 167 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
167 168 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
168 169 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
169 170 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
170 171 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
171 172 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
172 173 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
173 174 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
174 175 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
175 176 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
176 177 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
177 178 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
178 179 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
179 180 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
180 181 9.196552 GAGAAGAAGAAGAAGAAGAAGAAGAAG 57.803 37.037 0.00 0.00 0.00 2.85
181 182 8.700051 TGAGAAGAAGAAGAAGAAGAAGAAGAA 58.300 33.333 0.00 0.00 0.00 2.52
182 183 8.243961 TGAGAAGAAGAAGAAGAAGAAGAAGA 57.756 34.615 0.00 0.00 0.00 2.87
183 184 7.599998 CCTGAGAAGAAGAAGAAGAAGAAGAAG 59.400 40.741 0.00 0.00 0.00 2.85
184 185 7.441017 CCTGAGAAGAAGAAGAAGAAGAAGAA 58.559 38.462 0.00 0.00 0.00 2.52
185 186 6.518200 GCCTGAGAAGAAGAAGAAGAAGAAGA 60.518 42.308 0.00 0.00 0.00 2.87
186 187 5.639082 GCCTGAGAAGAAGAAGAAGAAGAAG 59.361 44.000 0.00 0.00 0.00 2.85
187 188 5.070981 TGCCTGAGAAGAAGAAGAAGAAGAA 59.929 40.000 0.00 0.00 0.00 2.52
188 189 4.590647 TGCCTGAGAAGAAGAAGAAGAAGA 59.409 41.667 0.00 0.00 0.00 2.87
189 190 4.892433 TGCCTGAGAAGAAGAAGAAGAAG 58.108 43.478 0.00 0.00 0.00 2.85
190 191 4.963318 TGCCTGAGAAGAAGAAGAAGAA 57.037 40.909 0.00 0.00 0.00 2.52
191 192 5.495926 AATGCCTGAGAAGAAGAAGAAGA 57.504 39.130 0.00 0.00 0.00 2.87
192 193 6.878389 AGTAAATGCCTGAGAAGAAGAAGAAG 59.122 38.462 0.00 0.00 0.00 2.85
193 194 6.773638 AGTAAATGCCTGAGAAGAAGAAGAA 58.226 36.000 0.00 0.00 0.00 2.52
194 195 6.212388 AGAGTAAATGCCTGAGAAGAAGAAGA 59.788 38.462 0.00 0.00 0.00 2.87
195 196 6.313411 CAGAGTAAATGCCTGAGAAGAAGAAG 59.687 42.308 0.00 0.00 0.00 2.85
196 197 6.169094 CAGAGTAAATGCCTGAGAAGAAGAA 58.831 40.000 0.00 0.00 0.00 2.52
197 198 5.247110 ACAGAGTAAATGCCTGAGAAGAAGA 59.753 40.000 0.00 0.00 0.00 2.87
198 199 5.486526 ACAGAGTAAATGCCTGAGAAGAAG 58.513 41.667 0.00 0.00 0.00 2.85
199 200 5.489792 ACAGAGTAAATGCCTGAGAAGAA 57.510 39.130 0.00 0.00 0.00 2.52
200 201 5.489792 AACAGAGTAAATGCCTGAGAAGA 57.510 39.130 0.00 0.00 0.00 2.87
201 202 7.672983 TTTAACAGAGTAAATGCCTGAGAAG 57.327 36.000 0.00 0.00 0.00 2.85
202 203 7.064609 CGATTTAACAGAGTAAATGCCTGAGAA 59.935 37.037 0.00 0.00 34.53 2.87
203 204 6.535150 CGATTTAACAGAGTAAATGCCTGAGA 59.465 38.462 0.00 0.00 34.53 3.27
204 205 6.238211 CCGATTTAACAGAGTAAATGCCTGAG 60.238 42.308 0.00 0.00 34.53 3.35
287 289 5.298026 TGTTTTTGATCCATTGAAGTGTCGA 59.702 36.000 0.00 0.00 0.00 4.20
290 292 6.713762 TCTGTTTTTGATCCATTGAAGTGT 57.286 33.333 0.00 0.00 0.00 3.55
298 300 4.676109 TCCCACATCTGTTTTTGATCCAT 58.324 39.130 0.00 0.00 0.00 3.41
656 659 1.336795 TGTCATGCGTCAGTCGATTGT 60.337 47.619 7.87 0.00 42.86 2.71
1140 1147 0.242017 GATGTGCAGGACTGTTTGCC 59.758 55.000 13.36 7.40 39.54 4.52
1262 1271 7.716998 ACTTCAGAGAGCTTTATTCAACAAAGA 59.283 33.333 0.00 0.00 35.43 2.52
1305 1317 1.600107 GCTAATCCGTCCCACCACA 59.400 57.895 0.00 0.00 0.00 4.17
1306 1318 1.520787 CGCTAATCCGTCCCACCAC 60.521 63.158 0.00 0.00 0.00 4.16
1307 1319 2.727392 CCGCTAATCCGTCCCACCA 61.727 63.158 0.00 0.00 0.00 4.17
1309 1321 2.588034 GCCGCTAATCCGTCCCAC 60.588 66.667 0.00 0.00 0.00 4.61
1310 1322 4.215742 CGCCGCTAATCCGTCCCA 62.216 66.667 0.00 0.00 0.00 4.37
1312 1324 4.884257 TGCGCCGCTAATCCGTCC 62.884 66.667 11.67 0.00 0.00 4.79
1313 1325 0.942410 TAATGCGCCGCTAATCCGTC 60.942 55.000 11.67 0.00 0.00 4.79
1314 1326 1.068417 TAATGCGCCGCTAATCCGT 59.932 52.632 11.67 0.00 0.00 4.69
1315 1327 0.944311 AGTAATGCGCCGCTAATCCG 60.944 55.000 11.67 0.00 0.00 4.18
1316 1328 0.512952 CAGTAATGCGCCGCTAATCC 59.487 55.000 11.67 0.00 0.00 3.01
1317 1329 0.110644 GCAGTAATGCGCCGCTAATC 60.111 55.000 11.67 0.00 0.00 1.75
1318 1330 1.941812 GCAGTAATGCGCCGCTAAT 59.058 52.632 11.67 0.00 0.00 1.73
1319 1331 3.405464 GCAGTAATGCGCCGCTAA 58.595 55.556 11.67 0.00 0.00 3.09
1337 1349 4.801624 GAACGTACGGGGCGGGTC 62.802 72.222 21.06 1.40 0.00 4.46
1338 1350 3.936772 TAGAACGTACGGGGCGGGT 62.937 63.158 21.06 0.00 0.00 5.28
1339 1351 2.019897 ATTAGAACGTACGGGGCGGG 62.020 60.000 21.06 0.00 0.00 6.13
1340 1352 0.595825 GATTAGAACGTACGGGGCGG 60.596 60.000 21.06 0.00 0.00 6.13
1341 1353 0.101040 TGATTAGAACGTACGGGGCG 59.899 55.000 21.06 0.00 0.00 6.13
1342 1354 2.199236 CTTGATTAGAACGTACGGGGC 58.801 52.381 21.06 8.16 0.00 5.80
1343 1355 2.817901 CCTTGATTAGAACGTACGGGG 58.182 52.381 21.06 2.11 0.00 5.73
1344 1356 2.199236 GCCTTGATTAGAACGTACGGG 58.801 52.381 21.06 7.83 0.00 5.28
1345 1357 1.850441 CGCCTTGATTAGAACGTACGG 59.150 52.381 21.06 1.43 0.00 4.02
1346 1358 1.254570 GCGCCTTGATTAGAACGTACG 59.745 52.381 15.01 15.01 0.00 3.67
1347 1359 1.254570 CGCGCCTTGATTAGAACGTAC 59.745 52.381 0.00 0.00 0.00 3.67
1348 1360 1.135315 ACGCGCCTTGATTAGAACGTA 60.135 47.619 5.73 0.00 0.00 3.57
1349 1361 0.389426 ACGCGCCTTGATTAGAACGT 60.389 50.000 5.73 0.00 0.00 3.99
1350 1362 0.719465 AACGCGCCTTGATTAGAACG 59.281 50.000 5.73 0.00 0.00 3.95
1351 1363 1.202031 CCAACGCGCCTTGATTAGAAC 60.202 52.381 18.93 0.00 0.00 3.01
1352 1364 1.083489 CCAACGCGCCTTGATTAGAA 58.917 50.000 18.93 0.00 0.00 2.10
1353 1365 0.036765 ACCAACGCGCCTTGATTAGA 60.037 50.000 18.93 0.00 0.00 2.10
1354 1366 0.802494 AACCAACGCGCCTTGATTAG 59.198 50.000 18.93 6.21 0.00 1.73
1355 1367 0.519519 CAACCAACGCGCCTTGATTA 59.480 50.000 18.93 0.00 0.00 1.75
1356 1368 1.169661 TCAACCAACGCGCCTTGATT 61.170 50.000 18.93 6.80 0.00 2.57
1357 1369 1.577328 CTCAACCAACGCGCCTTGAT 61.577 55.000 18.93 0.00 0.00 2.57
1358 1370 2.203084 TCAACCAACGCGCCTTGA 60.203 55.556 18.93 5.07 0.00 3.02
1359 1371 2.252260 CTCAACCAACGCGCCTTG 59.748 61.111 5.73 11.60 0.00 3.61
1360 1372 2.978010 CCTCAACCAACGCGCCTT 60.978 61.111 5.73 0.00 0.00 4.35
1363 1375 3.423154 CTCCCTCAACCAACGCGC 61.423 66.667 5.73 0.00 0.00 6.86
1364 1376 3.423154 GCTCCCTCAACCAACGCG 61.423 66.667 3.53 3.53 0.00 6.01
1365 1377 3.423154 CGCTCCCTCAACCAACGC 61.423 66.667 0.00 0.00 0.00 4.84
1366 1378 2.027625 GTCGCTCCCTCAACCAACG 61.028 63.158 0.00 0.00 0.00 4.10
1367 1379 2.027625 CGTCGCTCCCTCAACCAAC 61.028 63.158 0.00 0.00 0.00 3.77
1368 1380 2.342279 CGTCGCTCCCTCAACCAA 59.658 61.111 0.00 0.00 0.00 3.67
1369 1381 4.373116 GCGTCGCTCCCTCAACCA 62.373 66.667 10.68 0.00 0.00 3.67
1370 1382 4.373116 TGCGTCGCTCCCTCAACC 62.373 66.667 19.50 0.00 0.00 3.77
1371 1383 3.112709 GTGCGTCGCTCCCTCAAC 61.113 66.667 19.50 2.06 0.00 3.18
1372 1384 4.373116 GGTGCGTCGCTCCCTCAA 62.373 66.667 24.43 0.00 36.35 3.02
1374 1386 4.803426 CAGGTGCGTCGCTCCCTC 62.803 72.222 29.41 9.80 42.42 4.30
1387 1399 2.606519 TACTCGCCTTGGCCAGGT 60.607 61.111 14.60 6.47 46.07 4.00
1389 1401 0.103208 CTACTACTCGCCTTGGCCAG 59.897 60.000 5.11 5.35 0.00 4.85
1390 1402 0.613853 ACTACTACTCGCCTTGGCCA 60.614 55.000 0.00 0.00 0.00 5.36
1391 1403 1.337387 CTACTACTACTCGCCTTGGCC 59.663 57.143 6.02 0.00 0.00 5.36
1392 1404 2.022934 ACTACTACTACTCGCCTTGGC 58.977 52.381 0.75 0.75 0.00 4.52
1393 1405 2.287373 CGACTACTACTACTCGCCTTGG 59.713 54.545 0.00 0.00 0.00 3.61
1394 1406 2.287373 CCGACTACTACTACTCGCCTTG 59.713 54.545 0.00 0.00 0.00 3.61
1395 1407 2.559440 CCGACTACTACTACTCGCCTT 58.441 52.381 0.00 0.00 0.00 4.35
1396 1408 1.809651 GCCGACTACTACTACTCGCCT 60.810 57.143 0.00 0.00 0.00 5.52
1397 1409 0.585838 GCCGACTACTACTACTCGCC 59.414 60.000 0.00 0.00 0.00 5.54
1398 1410 0.231790 CGCCGACTACTACTACTCGC 59.768 60.000 0.00 0.00 0.00 5.03
1399 1411 0.857935 CCGCCGACTACTACTACTCG 59.142 60.000 0.00 0.00 0.00 4.18
1400 1412 1.864082 GACCGCCGACTACTACTACTC 59.136 57.143 0.00 0.00 0.00 2.59
1401 1413 1.474143 GGACCGCCGACTACTACTACT 60.474 57.143 0.00 0.00 0.00 2.57
1402 1414 0.940833 GGACCGCCGACTACTACTAC 59.059 60.000 0.00 0.00 0.00 2.73
1403 1415 3.386543 GGACCGCCGACTACTACTA 57.613 57.895 0.00 0.00 0.00 1.82
1404 1416 4.232310 GGACCGCCGACTACTACT 57.768 61.111 0.00 0.00 0.00 2.57
1441 1453 1.887242 GACACTGAACCTGCACGCA 60.887 57.895 0.00 0.00 0.00 5.24
1482 1494 2.203877 AGGGAAGGCACACCGGTA 60.204 61.111 6.87 0.00 42.76 4.02
1484 1496 3.901797 GACAGGGAAGGCACACCGG 62.902 68.421 0.00 0.00 42.76 5.28
1555 1571 2.740826 CCGTGTGGGTTCGCGATT 60.741 61.111 10.88 0.00 42.80 3.34
1580 1601 7.734538 ATCAACAAACTAAATTAATTCGCCG 57.265 32.000 0.10 0.00 0.00 6.46
1609 1630 1.601171 GCACATGCTGTCTCCTCCT 59.399 57.895 0.00 0.00 38.21 3.69
2027 2073 5.471257 ACGAGTCTTCTTGGATAGAACAAC 58.529 41.667 0.00 0.00 37.96 3.32
2068 2122 4.557205 AGACTTTCGACGAGTAATTTGCT 58.443 39.130 0.00 0.00 0.00 3.91
2122 2176 6.017605 GTCAAGTCACTGTCAAAGAATGTGAT 60.018 38.462 0.00 0.00 32.95 3.06
2188 2242 1.491754 ACCAAGGTTACGTTTCCAGGT 59.508 47.619 14.91 14.91 32.37 4.00
2245 2299 8.510243 AGGAGAAAGGTTACGTTTAAAGAAAA 57.490 30.769 2.92 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.