Multiple sequence alignment - TraesCS3B01G435800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G435800 chr3B 100.000 2932 0 0 1 2932 674395563 674398494 0.000000e+00 5415.0
1 TraesCS3B01G435800 chr3B 100.000 229 0 0 3215 3443 674398777 674399005 1.140000e-114 424.0
2 TraesCS3B01G435800 chr3D 92.607 2002 88 24 267 2229 512222197 512224177 0.000000e+00 2822.0
3 TraesCS3B01G435800 chr3D 89.080 696 42 12 2162 2840 512224206 512224884 0.000000e+00 833.0
4 TraesCS3B01G435800 chr3D 95.556 90 3 1 496 584 512222033 512222122 3.580000e-30 143.0
5 TraesCS3B01G435800 chr3D 97.059 68 2 0 2162 2229 512224158 512224225 7.810000e-22 115.0
6 TraesCS3B01G435800 chr3D 95.745 47 2 0 2823 2869 512258702 512258748 3.680000e-10 76.8
7 TraesCS3B01G435800 chr3A 90.886 1964 76 43 323 2228 648016609 648018527 0.000000e+00 2540.0
8 TraesCS3B01G435800 chr3A 86.387 764 52 19 2162 2907 648018509 648019238 0.000000e+00 787.0
9 TraesCS3B01G435800 chr3A 93.125 160 11 0 135 294 648016451 648016610 5.740000e-58 235.0
10 TraesCS3B01G435800 chr3A 90.278 72 7 0 2 73 648015913 648015984 1.020000e-15 95.3
11 TraesCS3B01G435800 chr6D 90.948 232 17 2 3215 3443 87604535 87604305 3.340000e-80 309.0
12 TraesCS3B01G435800 chr6A 90.517 232 18 2 3215 3443 105879276 105879046 1.550000e-78 303.0
13 TraesCS3B01G435800 chr4D 88.793 232 22 2 3215 3443 473763122 473763352 7.270000e-72 281.0
14 TraesCS3B01G435800 chr6B 88.841 233 19 4 3215 3443 640983799 640983570 2.620000e-71 279.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G435800 chr3B 674395563 674399005 3442 False 2919.500 5415 100.0000 1 3443 2 chr3B.!!$F1 3442
1 TraesCS3B01G435800 chr3D 512222033 512224884 2851 False 978.250 2822 93.5755 267 2840 4 chr3D.!!$F2 2573
2 TraesCS3B01G435800 chr3A 648015913 648019238 3325 False 914.325 2540 90.1690 2 2907 4 chr3A.!!$F1 2905

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
97 98 0.039764 GGAGGGGTTGGGGAAGAAAG 59.960 60.0 0.0 0.0 0.00 2.62 F
150 556 0.106217 GGGGAGAGAGAGAGGTGAGG 60.106 65.0 0.0 0.0 0.00 3.86 F
408 815 0.377905 AAACAAACGAAACGGACGGG 59.622 50.0 0.0 0.0 34.93 5.28 F
1416 1889 0.535797 GGTCCGTTTACCCTCAGGAG 59.464 60.0 0.0 0.0 36.73 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1416 1889 0.105709 CTCCTTCCTCCTCCTCCTCC 60.106 65.0 0.00 0.0 0.00 4.30 R
1975 2451 0.107831 CCCGAGTTGAACACCTTGGA 59.892 55.0 7.13 0.0 34.61 3.53 R
2370 2942 0.614979 CGGAGAAGACTTCCTCCCCA 60.615 60.0 19.57 0.0 44.66 4.96 R
3294 3907 0.035439 ACATCGCCGTCCTTCCATTT 60.035 50.0 0.00 0.0 0.00 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.746277 GCCATTGAAGGCGACCGT 60.746 61.111 0.00 0.00 46.12 4.83
45 46 2.398554 CCATTGAAGGCGACCGTGG 61.399 63.158 0.00 0.00 0.00 4.94
75 76 0.958876 AAAGGCGGCTAGGGTTTTCG 60.959 55.000 13.71 0.00 0.00 3.46
76 77 2.046604 GGCGGCTAGGGTTTTCGT 60.047 61.111 0.00 0.00 0.00 3.85
77 78 2.396157 GGCGGCTAGGGTTTTCGTG 61.396 63.158 0.00 0.00 0.00 4.35
82 83 0.392595 GCTAGGGTTTTCGTGGGAGG 60.393 60.000 0.00 0.00 0.00 4.30
83 84 0.252197 CTAGGGTTTTCGTGGGAGGG 59.748 60.000 0.00 0.00 0.00 4.30
84 85 1.202769 TAGGGTTTTCGTGGGAGGGG 61.203 60.000 0.00 0.00 0.00 4.79
86 87 1.152138 GGTTTTCGTGGGAGGGGTT 59.848 57.895 0.00 0.00 0.00 4.11
87 88 1.176619 GGTTTTCGTGGGAGGGGTTG 61.177 60.000 0.00 0.00 0.00 3.77
88 89 1.151908 TTTTCGTGGGAGGGGTTGG 59.848 57.895 0.00 0.00 0.00 3.77
89 90 2.360439 TTTTCGTGGGAGGGGTTGGG 62.360 60.000 0.00 0.00 0.00 4.12
92 93 2.861974 GTGGGAGGGGTTGGGGAA 60.862 66.667 0.00 0.00 0.00 3.97
93 94 2.534272 TGGGAGGGGTTGGGGAAG 60.534 66.667 0.00 0.00 0.00 3.46
94 95 2.204244 GGGAGGGGTTGGGGAAGA 60.204 66.667 0.00 0.00 0.00 2.87
95 96 1.855451 GGGAGGGGTTGGGGAAGAA 60.855 63.158 0.00 0.00 0.00 2.52
97 98 0.039764 GGAGGGGTTGGGGAAGAAAG 59.960 60.000 0.00 0.00 0.00 2.62
98 99 0.039764 GAGGGGTTGGGGAAGAAAGG 59.960 60.000 0.00 0.00 0.00 3.11
99 100 0.404346 AGGGGTTGGGGAAGAAAGGA 60.404 55.000 0.00 0.00 0.00 3.36
103 104 1.547901 GGTTGGGGAAGAAAGGAGTGG 60.548 57.143 0.00 0.00 0.00 4.00
106 107 1.767692 GGGAAGAAAGGAGTGGGCA 59.232 57.895 0.00 0.00 0.00 5.36
108 109 1.467920 GGAAGAAAGGAGTGGGCATG 58.532 55.000 0.00 0.00 0.00 4.06
109 110 1.004745 GGAAGAAAGGAGTGGGCATGA 59.995 52.381 0.00 0.00 0.00 3.07
113 114 1.867595 AAAGGAGTGGGCATGAGGGG 61.868 60.000 0.00 0.00 0.00 4.79
114 115 3.813724 GGAGTGGGCATGAGGGGG 61.814 72.222 0.00 0.00 0.00 5.40
115 116 2.692368 GAGTGGGCATGAGGGGGA 60.692 66.667 0.00 0.00 0.00 4.81
117 118 3.813724 GTGGGCATGAGGGGGAGG 61.814 72.222 0.00 0.00 0.00 4.30
120 121 2.448542 GGCATGAGGGGGAGGCTA 60.449 66.667 0.00 0.00 0.00 3.93
122 123 2.524204 GCATGAGGGGGAGGCTAGG 61.524 68.421 0.00 0.00 0.00 3.02
123 124 1.845205 CATGAGGGGGAGGCTAGGG 60.845 68.421 0.00 0.00 0.00 3.53
124 125 2.344995 ATGAGGGGGAGGCTAGGGT 61.345 63.158 0.00 0.00 0.00 4.34
125 126 1.914496 ATGAGGGGGAGGCTAGGGTT 61.914 60.000 0.00 0.00 0.00 4.11
126 127 1.307953 GAGGGGGAGGCTAGGGTTT 60.308 63.158 0.00 0.00 0.00 3.27
127 128 1.307953 AGGGGGAGGCTAGGGTTTC 60.308 63.158 0.00 0.00 0.00 2.78
128 129 2.743179 GGGGGAGGCTAGGGTTTCG 61.743 68.421 0.00 0.00 0.00 3.46
129 130 1.688187 GGGGAGGCTAGGGTTTCGA 60.688 63.158 0.00 0.00 0.00 3.71
130 131 1.269703 GGGGAGGCTAGGGTTTCGAA 61.270 60.000 0.00 0.00 0.00 3.71
132 133 0.178301 GGAGGCTAGGGTTTCGAAGG 59.822 60.000 0.00 0.00 0.00 3.46
133 134 0.178301 GAGGCTAGGGTTTCGAAGGG 59.822 60.000 0.00 0.00 0.00 3.95
148 554 1.286553 GAAGGGGAGAGAGAGAGGTGA 59.713 57.143 0.00 0.00 0.00 4.02
150 556 0.106217 GGGGAGAGAGAGAGGTGAGG 60.106 65.000 0.00 0.00 0.00 3.86
193 599 4.069232 CGAGTGCGGGAGGAGCAA 62.069 66.667 0.00 0.00 46.97 3.91
208 614 2.026729 GGAGCAAGGCTAGGTTTTCTCT 60.027 50.000 0.00 0.00 39.88 3.10
240 646 4.049186 ACTGCCTTTTATACGTCTATGCG 58.951 43.478 0.00 0.00 37.94 4.73
256 662 5.449113 GTCTATGCGTGAAATGACGAAAATG 59.551 40.000 0.00 0.00 42.10 2.32
262 668 3.057596 GTGAAATGACGAAAATGCCCTCA 60.058 43.478 0.00 0.00 0.00 3.86
265 671 3.627395 ATGACGAAAATGCCCTCAGTA 57.373 42.857 0.00 0.00 0.00 2.74
282 688 2.093128 CAGTAGGGCAAGGGAATTACGT 60.093 50.000 0.00 0.00 0.00 3.57
284 690 0.696501 AGGGCAAGGGAATTACGTGT 59.303 50.000 0.00 0.00 0.00 4.49
292 698 1.459450 GGAATTACGTGTGGTGGCAT 58.541 50.000 0.00 0.00 0.00 4.40
345 751 0.974010 TAGGGTTCGATCCAACGGCT 60.974 55.000 14.36 4.47 0.00 5.52
349 756 3.323758 TTCGATCCAACGGCTGGGG 62.324 63.158 6.02 0.00 46.44 4.96
351 758 4.115199 GATCCAACGGCTGGGGCT 62.115 66.667 6.02 0.00 46.44 5.19
366 773 1.078567 GGCTCTCTCCAGTGGCTTG 60.079 63.158 3.51 0.00 36.13 4.01
373 780 0.467384 CTCCAGTGGCTTGATCCGAT 59.533 55.000 3.51 0.00 0.00 4.18
374 781 1.688735 CTCCAGTGGCTTGATCCGATA 59.311 52.381 3.51 0.00 0.00 2.92
376 783 1.414181 CCAGTGGCTTGATCCGATAGT 59.586 52.381 0.00 0.00 0.00 2.12
391 798 2.607038 CGATAGTCCGGATCGCATCAAA 60.607 50.000 7.81 0.00 39.71 2.69
408 815 0.377905 AAACAAACGAAACGGACGGG 59.622 50.000 0.00 0.00 34.93 5.28
467 874 4.941873 GGATCGGTTCTTGTTTTAGGATGT 59.058 41.667 0.00 0.00 0.00 3.06
528 939 0.941542 AAAAACGCAGCAACGCTAGA 59.058 45.000 0.00 0.00 36.40 2.43
544 955 2.441410 CTAGAGGAGCATGATCCGCTA 58.559 52.381 32.56 32.56 46.32 4.26
561 972 5.833082 TCCGCTAGAGATAGAATGTCAAAC 58.167 41.667 0.00 0.00 0.00 2.93
589 1000 1.063717 ACCGGAGATTTCCTACCCGTA 60.064 52.381 9.46 0.00 41.67 4.02
590 1001 2.245582 CCGGAGATTTCCTACCCGTAT 58.754 52.381 0.00 0.00 41.67 3.06
656 1088 4.576463 GCAGAAACAGAAAGAAACCTGAGA 59.424 41.667 0.00 0.00 34.65 3.27
832 1286 2.721231 CCACCCACAACACAAGCG 59.279 61.111 0.00 0.00 0.00 4.68
900 1363 2.565645 CGATCGATCTCCGCCCCTT 61.566 63.158 22.43 0.00 38.37 3.95
946 1410 0.671251 CGCAACCAAAACCCTAGCAA 59.329 50.000 0.00 0.00 0.00 3.91
1404 1871 4.309950 GTCGGTGGCAGGTCCGTT 62.310 66.667 13.78 0.00 45.88 4.44
1406 1873 2.208619 TCGGTGGCAGGTCCGTTTA 61.209 57.895 13.78 0.00 45.88 2.01
1410 1883 1.844289 TGGCAGGTCCGTTTACCCT 60.844 57.895 0.00 0.00 40.71 4.34
1416 1889 0.535797 GGTCCGTTTACCCTCAGGAG 59.464 60.000 0.00 0.00 36.73 3.69
1672 2145 4.748144 CCCAACCTCAGCCAGCCC 62.748 72.222 0.00 0.00 0.00 5.19
2031 2507 2.804572 GCACATGAGGATGCACTACGAT 60.805 50.000 0.00 0.00 41.65 3.73
2384 2956 2.294078 CGGCTGGGGAGGAAGTCTT 61.294 63.158 0.00 0.00 0.00 3.01
2396 2968 0.733223 GAAGTCTTCTCCGCCGTGAC 60.733 60.000 5.27 0.00 0.00 3.67
2445 3017 5.010213 GTCTACCAACATCCAGGAGTAGATC 59.990 48.000 15.31 8.30 38.63 2.75
2500 3072 6.821031 AGGGATACGACAGATACTTGATAC 57.179 41.667 0.00 0.00 37.60 2.24
2501 3073 6.544650 AGGGATACGACAGATACTTGATACT 58.455 40.000 0.00 0.00 37.60 2.12
2539 3118 4.695993 TGCATGCCGCGGACTTCA 62.696 61.111 33.48 18.45 46.97 3.02
2540 3119 4.166011 GCATGCCGCGGACTTCAC 62.166 66.667 33.48 10.79 0.00 3.18
2541 3120 3.853330 CATGCCGCGGACTTCACG 61.853 66.667 33.48 5.58 0.00 4.35
2542 3121 4.373116 ATGCCGCGGACTTCACGT 62.373 61.111 33.48 8.43 0.00 4.49
2577 3164 8.970020 AGATTTTATGCCATTTTGTATCACAGA 58.030 29.630 0.00 0.00 0.00 3.41
2578 3165 9.754382 GATTTTATGCCATTTTGTATCACAGAT 57.246 29.630 0.00 0.00 0.00 2.90
2580 3167 9.585099 TTTTATGCCATTTTGTATCACAGATTC 57.415 29.630 0.00 0.00 0.00 2.52
2581 3168 6.778834 ATGCCATTTTGTATCACAGATTCA 57.221 33.333 0.00 0.00 0.00 2.57
2582 3169 5.953183 TGCCATTTTGTATCACAGATTCAC 58.047 37.500 0.00 0.00 0.00 3.18
2583 3170 5.476254 TGCCATTTTGTATCACAGATTCACA 59.524 36.000 0.00 0.00 0.00 3.58
2584 3171 6.032094 GCCATTTTGTATCACAGATTCACAG 58.968 40.000 0.00 0.00 0.00 3.66
2585 3172 6.349611 GCCATTTTGTATCACAGATTCACAGT 60.350 38.462 0.00 0.00 0.00 3.55
2586 3173 7.596494 CCATTTTGTATCACAGATTCACAGTT 58.404 34.615 0.00 0.00 0.00 3.16
2658 3253 1.130749 ACACGATCGAGTAGTGTCAGC 59.869 52.381 24.34 0.00 42.04 4.26
2670 3268 2.245582 AGTGTCAGCGGTTAAGTAGGT 58.754 47.619 0.00 0.00 0.00 3.08
2715 3313 4.606457 CAGAAGTAAACTGCTATGTGGC 57.394 45.455 0.00 0.00 28.52 5.01
2717 3315 3.056107 AGAAGTAAACTGCTATGTGGCGA 60.056 43.478 0.00 0.00 27.48 5.54
2718 3316 3.328382 AGTAAACTGCTATGTGGCGAA 57.672 42.857 0.00 0.00 34.52 4.70
2719 3317 3.000727 AGTAAACTGCTATGTGGCGAAC 58.999 45.455 0.00 0.00 34.52 3.95
2720 3318 1.165270 AAACTGCTATGTGGCGAACC 58.835 50.000 0.00 0.00 34.52 3.62
2721 3319 0.676782 AACTGCTATGTGGCGAACCC 60.677 55.000 0.00 0.00 33.59 4.11
2722 3320 1.078497 CTGCTATGTGGCGAACCCA 60.078 57.895 0.00 0.00 42.79 4.51
2737 3335 4.253685 CGAACCCAGATTCAGTGTGTATT 58.746 43.478 0.00 0.00 0.00 1.89
2738 3336 5.416083 CGAACCCAGATTCAGTGTGTATTA 58.584 41.667 0.00 0.00 0.00 0.98
2739 3337 5.291128 CGAACCCAGATTCAGTGTGTATTAC 59.709 44.000 0.00 0.00 0.00 1.89
2740 3338 5.755409 ACCCAGATTCAGTGTGTATTACA 57.245 39.130 0.00 0.00 36.82 2.41
2762 3366 5.013079 ACACATTGTCTTCACCCAGATTCTA 59.987 40.000 0.00 0.00 0.00 2.10
2771 3375 7.772757 GTCTTCACCCAGATTCTATCTCATTTT 59.227 37.037 0.00 0.00 37.58 1.82
2807 3417 0.742990 CGGGAAAGCTATGTGGCGAA 60.743 55.000 0.00 0.00 37.29 4.70
2821 3431 0.865769 GGCGAACGACTTGTGTCAAT 59.134 50.000 0.00 0.00 43.06 2.57
2831 3441 7.121974 ACGACTTGTGTCAATATTTCAGAAG 57.878 36.000 17.80 17.80 43.06 2.85
2843 3453 8.412456 TCAATATTTCAGAAGCAAAAGTTGTCA 58.588 29.630 0.00 0.00 0.00 3.58
2860 3470 2.221169 GTCATGTGGTCAGCTGAAACA 58.779 47.619 26.91 26.91 0.00 2.83
2863 3473 1.388547 TGTGGTCAGCTGAAACAACC 58.611 50.000 24.17 19.16 0.00 3.77
2864 3474 1.064758 TGTGGTCAGCTGAAACAACCT 60.065 47.619 24.17 0.00 0.00 3.50
2865 3475 1.604278 GTGGTCAGCTGAAACAACCTC 59.396 52.381 20.19 12.55 0.00 3.85
2866 3476 1.490490 TGGTCAGCTGAAACAACCTCT 59.510 47.619 20.19 0.00 0.00 3.69
2867 3477 1.876156 GGTCAGCTGAAACAACCTCTG 59.124 52.381 20.19 0.00 0.00 3.35
2868 3478 1.265365 GTCAGCTGAAACAACCTCTGC 59.735 52.381 20.19 0.00 37.86 4.26
2869 3479 0.236711 CAGCTGAAACAACCTCTGCG 59.763 55.000 8.42 0.00 41.23 5.18
2870 3480 0.886490 AGCTGAAACAACCTCTGCGG 60.886 55.000 0.00 0.00 41.23 5.69
2871 3481 1.576421 CTGAAACAACCTCTGCGGC 59.424 57.895 0.00 0.00 35.61 6.53
2907 3520 7.711846 TGGGTAATGAACATTGTATACATTGC 58.288 34.615 21.89 17.19 34.57 3.56
2908 3521 7.559533 TGGGTAATGAACATTGTATACATTGCT 59.440 33.333 21.89 13.56 35.26 3.91
2909 3522 8.413229 GGGTAATGAACATTGTATACATTGCTT 58.587 33.333 21.89 16.31 35.26 3.91
2913 3526 9.787532 AATGAACATTGTATACATTGCTTACAC 57.212 29.630 21.89 11.03 32.23 2.90
2914 3527 8.560355 TGAACATTGTATACATTGCTTACACT 57.440 30.769 21.89 4.08 32.23 3.55
2915 3528 9.660180 TGAACATTGTATACATTGCTTACACTA 57.340 29.630 21.89 0.00 32.23 2.74
2917 3530 9.667107 AACATTGTATACATTGCTTACACTAGT 57.333 29.630 21.89 0.00 32.23 2.57
3235 3848 2.644887 CCATGGATTGGTATGGGCG 58.355 57.895 5.56 0.00 40.99 6.13
3236 3849 0.178992 CCATGGATTGGTATGGGCGT 60.179 55.000 5.56 0.00 40.99 5.68
3237 3850 0.953727 CATGGATTGGTATGGGCGTG 59.046 55.000 0.00 0.00 0.00 5.34
3238 3851 0.823356 ATGGATTGGTATGGGCGTGC 60.823 55.000 0.00 0.00 0.00 5.34
3239 3852 2.193536 GGATTGGTATGGGCGTGCC 61.194 63.158 1.16 1.16 0.00 5.01
3240 3853 2.515991 ATTGGTATGGGCGTGCCG 60.516 61.111 4.53 0.00 36.85 5.69
3241 3854 3.338275 ATTGGTATGGGCGTGCCGT 62.338 57.895 4.53 0.00 36.85 5.68
3242 3855 4.769063 TGGTATGGGCGTGCCGTG 62.769 66.667 4.53 0.00 36.85 4.94
3263 3876 4.296265 GGAAGACGACCGCCATTT 57.704 55.556 0.00 0.00 0.00 2.32
3264 3877 2.087344 GGAAGACGACCGCCATTTC 58.913 57.895 0.00 0.00 0.00 2.17
3265 3878 0.391263 GGAAGACGACCGCCATTTCT 60.391 55.000 0.00 0.00 0.00 2.52
3266 3879 1.439679 GAAGACGACCGCCATTTCTT 58.560 50.000 0.00 0.00 0.00 2.52
3267 3880 1.393883 GAAGACGACCGCCATTTCTTC 59.606 52.381 0.00 4.70 36.46 2.87
3268 3881 0.736325 AGACGACCGCCATTTCTTCG 60.736 55.000 0.00 0.00 35.80 3.79
3269 3882 2.292802 GACGACCGCCATTTCTTCGC 62.293 60.000 0.00 0.00 32.91 4.70
3270 3883 2.399611 GACCGCCATTTCTTCGCG 59.600 61.111 0.00 0.00 45.32 5.87
3273 3886 3.798650 CGCCATTTCTTCGCGGCA 61.799 61.111 6.13 0.00 45.14 5.69
3274 3887 2.100991 GCCATTTCTTCGCGGCAG 59.899 61.111 6.13 2.57 44.25 4.85
3275 3888 2.100991 CCATTTCTTCGCGGCAGC 59.899 61.111 6.13 0.00 40.74 5.25
3276 3889 2.100991 CATTTCTTCGCGGCAGCC 59.899 61.111 6.13 0.00 41.18 4.85
3277 3890 2.359850 ATTTCTTCGCGGCAGCCA 60.360 55.556 13.30 0.00 41.18 4.75
3278 3891 2.690778 ATTTCTTCGCGGCAGCCAC 61.691 57.895 13.30 0.00 41.18 5.01
3298 3911 3.573558 CGGTCACCGTGGGAAATG 58.426 61.111 8.54 0.00 42.73 2.32
3299 3912 2.038269 CGGTCACCGTGGGAAATGG 61.038 63.158 8.54 0.00 42.73 3.16
3300 3913 1.377229 GGTCACCGTGGGAAATGGA 59.623 57.895 0.00 0.00 38.47 3.41
3301 3914 0.250989 GGTCACCGTGGGAAATGGAA 60.251 55.000 0.00 0.00 38.47 3.53
3302 3915 1.165270 GTCACCGTGGGAAATGGAAG 58.835 55.000 0.00 0.00 38.47 3.46
3303 3916 0.037590 TCACCGTGGGAAATGGAAGG 59.962 55.000 0.00 0.00 38.47 3.46
3304 3917 0.037590 CACCGTGGGAAATGGAAGGA 59.962 55.000 0.00 0.00 38.47 3.36
3305 3918 0.037734 ACCGTGGGAAATGGAAGGAC 59.962 55.000 0.00 0.00 38.47 3.85
3306 3919 1.024579 CCGTGGGAAATGGAAGGACG 61.025 60.000 0.00 0.00 37.06 4.79
3307 3920 1.024579 CGTGGGAAATGGAAGGACGG 61.025 60.000 0.00 0.00 0.00 4.79
3308 3921 1.001393 TGGGAAATGGAAGGACGGC 60.001 57.895 0.00 0.00 0.00 5.68
3309 3922 2.112815 GGGAAATGGAAGGACGGCG 61.113 63.158 4.80 4.80 0.00 6.46
3310 3923 1.078708 GGAAATGGAAGGACGGCGA 60.079 57.895 16.62 0.00 0.00 5.54
3311 3924 0.463833 GGAAATGGAAGGACGGCGAT 60.464 55.000 16.62 0.00 0.00 4.58
3312 3925 0.657840 GAAATGGAAGGACGGCGATG 59.342 55.000 16.62 0.00 0.00 3.84
3313 3926 0.035439 AAATGGAAGGACGGCGATGT 60.035 50.000 16.62 0.00 0.00 3.06
3314 3927 0.035439 AATGGAAGGACGGCGATGTT 60.035 50.000 16.62 2.50 0.00 2.71
3315 3928 0.462047 ATGGAAGGACGGCGATGTTC 60.462 55.000 16.62 12.35 0.00 3.18
3316 3929 1.218316 GGAAGGACGGCGATGTTCT 59.782 57.895 16.62 0.00 0.00 3.01
3317 3930 1.084370 GGAAGGACGGCGATGTTCTG 61.084 60.000 16.62 0.00 0.00 3.02
3318 3931 1.079127 AAGGACGGCGATGTTCTGG 60.079 57.895 16.62 0.00 0.00 3.86
3319 3932 1.541310 AAGGACGGCGATGTTCTGGA 61.541 55.000 16.62 0.00 0.00 3.86
3320 3933 1.810030 GGACGGCGATGTTCTGGAC 60.810 63.158 16.62 0.00 0.00 4.02
3321 3934 1.215647 GACGGCGATGTTCTGGACT 59.784 57.895 16.62 0.00 0.00 3.85
3322 3935 0.389948 GACGGCGATGTTCTGGACTT 60.390 55.000 16.62 0.00 0.00 3.01
3323 3936 0.389948 ACGGCGATGTTCTGGACTTC 60.390 55.000 16.62 0.00 0.00 3.01
3324 3937 0.389817 CGGCGATGTTCTGGACTTCA 60.390 55.000 0.00 0.00 33.27 3.02
3325 3938 1.740380 CGGCGATGTTCTGGACTTCAT 60.740 52.381 0.00 0.00 33.27 2.57
3326 3939 1.936547 GGCGATGTTCTGGACTTCATC 59.063 52.381 3.25 0.00 33.27 2.92
3327 3940 2.419297 GGCGATGTTCTGGACTTCATCT 60.419 50.000 3.25 0.00 35.82 2.90
3328 3941 3.265791 GCGATGTTCTGGACTTCATCTT 58.734 45.455 3.25 0.00 35.82 2.40
3329 3942 3.063180 GCGATGTTCTGGACTTCATCTTG 59.937 47.826 3.25 0.00 35.82 3.02
3330 3943 3.620374 CGATGTTCTGGACTTCATCTTGG 59.380 47.826 3.25 0.00 35.82 3.61
3331 3944 2.783135 TGTTCTGGACTTCATCTTGGC 58.217 47.619 0.00 0.00 0.00 4.52
3332 3945 2.373169 TGTTCTGGACTTCATCTTGGCT 59.627 45.455 0.00 0.00 0.00 4.75
3333 3946 3.181440 TGTTCTGGACTTCATCTTGGCTT 60.181 43.478 0.00 0.00 0.00 4.35
3334 3947 3.795688 TCTGGACTTCATCTTGGCTTT 57.204 42.857 0.00 0.00 0.00 3.51
3335 3948 3.415212 TCTGGACTTCATCTTGGCTTTG 58.585 45.455 0.00 0.00 0.00 2.77
3336 3949 2.490903 CTGGACTTCATCTTGGCTTTGG 59.509 50.000 0.00 0.00 0.00 3.28
3337 3950 2.108075 TGGACTTCATCTTGGCTTTGGA 59.892 45.455 0.00 0.00 0.00 3.53
3338 3951 2.751806 GGACTTCATCTTGGCTTTGGAG 59.248 50.000 0.00 0.00 0.00 3.86
3339 3952 2.751806 GACTTCATCTTGGCTTTGGAGG 59.248 50.000 0.00 0.00 0.00 4.30
3340 3953 2.376518 ACTTCATCTTGGCTTTGGAGGA 59.623 45.455 0.00 0.00 0.00 3.71
3341 3954 3.011032 ACTTCATCTTGGCTTTGGAGGAT 59.989 43.478 0.00 0.00 0.00 3.24
3342 3955 3.744940 TCATCTTGGCTTTGGAGGATT 57.255 42.857 0.00 0.00 0.00 3.01
3343 3956 3.359033 TCATCTTGGCTTTGGAGGATTG 58.641 45.455 0.00 0.00 0.00 2.67
3344 3957 2.978156 TCTTGGCTTTGGAGGATTGT 57.022 45.000 0.00 0.00 0.00 2.71
3345 3958 2.517959 TCTTGGCTTTGGAGGATTGTG 58.482 47.619 0.00 0.00 0.00 3.33
3346 3959 0.968405 TTGGCTTTGGAGGATTGTGC 59.032 50.000 0.00 0.00 0.00 4.57
3347 3960 0.899717 TGGCTTTGGAGGATTGTGCC 60.900 55.000 0.00 0.00 39.33 5.01
3348 3961 1.607801 GGCTTTGGAGGATTGTGCCC 61.608 60.000 0.00 0.00 33.45 5.36
3349 3962 0.613012 GCTTTGGAGGATTGTGCCCT 60.613 55.000 0.00 0.00 36.57 5.19
3353 3966 2.190578 GAGGATTGTGCCCTCGGG 59.809 66.667 0.00 0.00 40.58 5.14
3354 3967 2.285368 AGGATTGTGCCCTCGGGA 60.285 61.111 6.08 0.00 37.50 5.14
3355 3968 2.124695 GGATTGTGCCCTCGGGAC 60.125 66.667 6.08 0.00 44.48 4.46
3362 3975 4.593864 GCCCTCGGGACATCGCTC 62.594 72.222 6.08 0.00 37.50 5.03
3363 3976 3.917760 CCCTCGGGACATCGCTCC 61.918 72.222 0.00 0.00 37.50 4.70
3364 3977 3.917760 CCTCGGGACATCGCTCCC 61.918 72.222 0.00 0.00 46.19 4.30
3369 3982 3.622514 GGACATCGCTCCCAGTCT 58.377 61.111 0.00 0.00 0.00 3.24
3370 3983 1.439644 GGACATCGCTCCCAGTCTC 59.560 63.158 0.00 0.00 0.00 3.36
3371 3984 1.040339 GGACATCGCTCCCAGTCTCT 61.040 60.000 0.00 0.00 0.00 3.10
3372 3985 1.681538 GACATCGCTCCCAGTCTCTA 58.318 55.000 0.00 0.00 0.00 2.43
3373 3986 1.335496 GACATCGCTCCCAGTCTCTAC 59.665 57.143 0.00 0.00 0.00 2.59
3374 3987 0.309302 CATCGCTCCCAGTCTCTACG 59.691 60.000 0.00 0.00 0.00 3.51
3375 3988 0.180642 ATCGCTCCCAGTCTCTACGA 59.819 55.000 0.00 0.00 0.00 3.43
3376 3989 0.180642 TCGCTCCCAGTCTCTACGAT 59.819 55.000 0.00 0.00 0.00 3.73
3377 3990 0.589223 CGCTCCCAGTCTCTACGATC 59.411 60.000 0.00 0.00 0.00 3.69
3378 3991 1.812324 CGCTCCCAGTCTCTACGATCT 60.812 57.143 0.00 0.00 0.00 2.75
3379 3992 1.877443 GCTCCCAGTCTCTACGATCTC 59.123 57.143 0.00 0.00 0.00 2.75
3380 3993 2.486548 GCTCCCAGTCTCTACGATCTCT 60.487 54.545 0.00 0.00 0.00 3.10
3381 3994 3.399330 CTCCCAGTCTCTACGATCTCTC 58.601 54.545 0.00 0.00 0.00 3.20
3382 3995 3.042682 TCCCAGTCTCTACGATCTCTCT 58.957 50.000 0.00 0.00 0.00 3.10
3383 3996 3.070446 TCCCAGTCTCTACGATCTCTCTC 59.930 52.174 0.00 0.00 0.00 3.20
3384 3997 3.399330 CCAGTCTCTACGATCTCTCTCC 58.601 54.545 0.00 0.00 0.00 3.71
3385 3998 3.399330 CAGTCTCTACGATCTCTCTCCC 58.601 54.545 0.00 0.00 0.00 4.30
3386 3999 3.042682 AGTCTCTACGATCTCTCTCCCA 58.957 50.000 0.00 0.00 0.00 4.37
3387 4000 3.456644 AGTCTCTACGATCTCTCTCCCAA 59.543 47.826 0.00 0.00 0.00 4.12
3388 4001 3.813166 GTCTCTACGATCTCTCTCCCAAG 59.187 52.174 0.00 0.00 0.00 3.61
3389 4002 3.146066 CTCTACGATCTCTCTCCCAAGG 58.854 54.545 0.00 0.00 0.00 3.61
3390 4003 2.778270 TCTACGATCTCTCTCCCAAGGA 59.222 50.000 0.00 0.00 0.00 3.36
3391 4004 2.534042 ACGATCTCTCTCCCAAGGAA 57.466 50.000 0.00 0.00 0.00 3.36
3392 4005 2.821437 ACGATCTCTCTCCCAAGGAAA 58.179 47.619 0.00 0.00 0.00 3.13
3393 4006 3.173965 ACGATCTCTCTCCCAAGGAAAA 58.826 45.455 0.00 0.00 0.00 2.29
3394 4007 3.055747 ACGATCTCTCTCCCAAGGAAAAC 60.056 47.826 0.00 0.00 0.00 2.43
3395 4008 3.196685 CGATCTCTCTCCCAAGGAAAACT 59.803 47.826 0.00 0.00 0.00 2.66
3396 4009 4.679372 CGATCTCTCTCCCAAGGAAAACTC 60.679 50.000 0.00 0.00 0.00 3.01
3397 4010 2.563179 TCTCTCTCCCAAGGAAAACTCG 59.437 50.000 0.00 0.00 0.00 4.18
3398 4011 1.623811 TCTCTCCCAAGGAAAACTCGG 59.376 52.381 0.00 0.00 0.00 4.63
3399 4012 1.348036 CTCTCCCAAGGAAAACTCGGT 59.652 52.381 0.00 0.00 0.00 4.69
3400 4013 1.772453 TCTCCCAAGGAAAACTCGGTT 59.228 47.619 0.00 0.00 0.00 4.44
3401 4014 2.173996 TCTCCCAAGGAAAACTCGGTTT 59.826 45.455 0.00 0.00 37.34 3.27
3402 4015 3.391955 TCTCCCAAGGAAAACTCGGTTTA 59.608 43.478 3.01 0.00 34.43 2.01
3403 4016 3.746940 TCCCAAGGAAAACTCGGTTTAG 58.253 45.455 3.01 0.00 34.43 1.85
3404 4017 2.228103 CCCAAGGAAAACTCGGTTTAGC 59.772 50.000 3.01 0.21 34.43 3.09
3405 4018 2.882137 CCAAGGAAAACTCGGTTTAGCA 59.118 45.455 3.01 0.00 34.43 3.49
3406 4019 3.316868 CCAAGGAAAACTCGGTTTAGCAA 59.683 43.478 3.01 0.00 34.43 3.91
3407 4020 4.537015 CAAGGAAAACTCGGTTTAGCAAG 58.463 43.478 3.01 0.00 34.43 4.01
3408 4021 2.552743 AGGAAAACTCGGTTTAGCAAGC 59.447 45.455 3.01 0.00 34.43 4.01
3409 4022 2.552743 GGAAAACTCGGTTTAGCAAGCT 59.447 45.455 0.00 0.00 34.43 3.74
3410 4023 3.749609 GGAAAACTCGGTTTAGCAAGCTA 59.250 43.478 0.00 0.00 34.43 3.32
3411 4024 4.395231 GGAAAACTCGGTTTAGCAAGCTAT 59.605 41.667 2.16 0.00 34.43 2.97
3412 4025 4.946784 AAACTCGGTTTAGCAAGCTATG 57.053 40.909 2.16 0.00 33.70 2.23
3413 4026 2.906354 ACTCGGTTTAGCAAGCTATGG 58.094 47.619 2.16 0.00 0.00 2.74
3414 4027 1.599542 CTCGGTTTAGCAAGCTATGGC 59.400 52.381 2.16 0.00 39.06 4.40
3415 4028 0.663153 CGGTTTAGCAAGCTATGGCC 59.337 55.000 2.16 0.00 39.73 5.36
3416 4029 1.762708 GGTTTAGCAAGCTATGGCCA 58.237 50.000 8.56 8.56 39.73 5.36
3417 4030 2.099405 GGTTTAGCAAGCTATGGCCAA 58.901 47.619 10.96 0.00 39.73 4.52
3418 4031 2.159240 GGTTTAGCAAGCTATGGCCAAC 60.159 50.000 10.96 1.77 39.73 3.77
3419 4032 2.491693 GTTTAGCAAGCTATGGCCAACA 59.508 45.455 10.96 0.00 39.73 3.33
3420 4033 2.505650 TAGCAAGCTATGGCCAACAA 57.494 45.000 10.96 0.00 39.73 2.83
3421 4034 0.890683 AGCAAGCTATGGCCAACAAC 59.109 50.000 10.96 0.00 39.73 3.32
3422 4035 0.108662 GCAAGCTATGGCCAACAACC 60.109 55.000 10.96 0.00 39.73 3.77
3423 4036 0.171007 CAAGCTATGGCCAACAACCG 59.829 55.000 10.96 0.00 39.73 4.44
3424 4037 0.965363 AAGCTATGGCCAACAACCGG 60.965 55.000 10.96 0.00 39.73 5.28
3425 4038 1.677633 GCTATGGCCAACAACCGGT 60.678 57.895 10.96 0.00 0.00 5.28
3426 4039 1.933115 GCTATGGCCAACAACCGGTG 61.933 60.000 10.96 4.99 0.00 4.94
3427 4040 1.303724 TATGGCCAACAACCGGTGG 60.304 57.895 10.96 8.06 0.00 4.61
3428 4041 1.780107 TATGGCCAACAACCGGTGGA 61.780 55.000 18.24 0.00 0.00 4.02
3429 4042 2.282887 GGCCAACAACCGGTGGAT 60.283 61.111 18.24 0.00 0.00 3.41
3430 4043 1.906333 GGCCAACAACCGGTGGATT 60.906 57.895 18.24 3.95 0.00 3.01
3431 4044 1.288752 GCCAACAACCGGTGGATTG 59.711 57.895 18.24 16.51 0.00 2.67
3432 4045 1.288752 CCAACAACCGGTGGATTGC 59.711 57.895 18.24 0.00 0.00 3.56
3433 4046 1.081509 CAACAACCGGTGGATTGCG 60.082 57.895 18.24 0.00 0.00 4.85
3434 4047 1.228003 AACAACCGGTGGATTGCGA 60.228 52.632 18.24 0.00 0.00 5.10
3435 4048 0.820074 AACAACCGGTGGATTGCGAA 60.820 50.000 18.24 0.00 0.00 4.70
3436 4049 0.608035 ACAACCGGTGGATTGCGAAT 60.608 50.000 18.24 0.00 0.00 3.34
3437 4050 1.339247 ACAACCGGTGGATTGCGAATA 60.339 47.619 18.24 0.00 0.00 1.75
3438 4051 1.946768 CAACCGGTGGATTGCGAATAT 59.053 47.619 8.52 0.00 0.00 1.28
3439 4052 2.341846 ACCGGTGGATTGCGAATATT 57.658 45.000 6.12 0.00 0.00 1.28
3440 4053 1.946768 ACCGGTGGATTGCGAATATTG 59.053 47.619 6.12 0.00 0.00 1.90
3441 4054 2.217750 CCGGTGGATTGCGAATATTGA 58.782 47.619 0.00 0.00 0.00 2.57
3442 4055 2.032030 CCGGTGGATTGCGAATATTGAC 60.032 50.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 2.115291 CCTAGCCGCCTTTTCAGCC 61.115 63.158 0.00 0.00 0.00 4.85
53 54 0.111639 AAACCCTAGCCGCCTTTTCA 59.888 50.000 0.00 0.00 0.00 2.69
63 64 0.392595 CCTCCCACGAAAACCCTAGC 60.393 60.000 0.00 0.00 0.00 3.42
75 76 2.861974 TTCCCCAACCCCTCCCAC 60.862 66.667 0.00 0.00 0.00 4.61
76 77 2.534272 CTTCCCCAACCCCTCCCA 60.534 66.667 0.00 0.00 0.00 4.37
77 78 1.440362 TTTCTTCCCCAACCCCTCCC 61.440 60.000 0.00 0.00 0.00 4.30
82 83 0.778083 ACTCCTTTCTTCCCCAACCC 59.222 55.000 0.00 0.00 0.00 4.11
83 84 1.547901 CCACTCCTTTCTTCCCCAACC 60.548 57.143 0.00 0.00 0.00 3.77
84 85 1.547901 CCCACTCCTTTCTTCCCCAAC 60.548 57.143 0.00 0.00 0.00 3.77
86 87 1.789576 GCCCACTCCTTTCTTCCCCA 61.790 60.000 0.00 0.00 0.00 4.96
87 88 1.000771 GCCCACTCCTTTCTTCCCC 60.001 63.158 0.00 0.00 0.00 4.81
88 89 0.332972 ATGCCCACTCCTTTCTTCCC 59.667 55.000 0.00 0.00 0.00 3.97
89 90 1.004745 TCATGCCCACTCCTTTCTTCC 59.995 52.381 0.00 0.00 0.00 3.46
91 92 1.005215 CCTCATGCCCACTCCTTTCTT 59.995 52.381 0.00 0.00 0.00 2.52
92 93 0.622665 CCTCATGCCCACTCCTTTCT 59.377 55.000 0.00 0.00 0.00 2.52
93 94 0.394899 CCCTCATGCCCACTCCTTTC 60.395 60.000 0.00 0.00 0.00 2.62
94 95 1.693640 CCCTCATGCCCACTCCTTT 59.306 57.895 0.00 0.00 0.00 3.11
95 96 2.311854 CCCCTCATGCCCACTCCTT 61.312 63.158 0.00 0.00 0.00 3.36
97 98 3.813724 CCCCCTCATGCCCACTCC 61.814 72.222 0.00 0.00 0.00 3.85
98 99 2.692368 TCCCCCTCATGCCCACTC 60.692 66.667 0.00 0.00 0.00 3.51
99 100 2.693864 CTCCCCCTCATGCCCACT 60.694 66.667 0.00 0.00 0.00 4.00
103 104 2.448542 TAGCCTCCCCCTCATGCC 60.449 66.667 0.00 0.00 0.00 4.40
106 107 1.914496 AACCCTAGCCTCCCCCTCAT 61.914 60.000 0.00 0.00 0.00 2.90
108 109 1.307953 AAACCCTAGCCTCCCCCTC 60.308 63.158 0.00 0.00 0.00 4.30
109 110 1.307953 GAAACCCTAGCCTCCCCCT 60.308 63.158 0.00 0.00 0.00 4.79
113 114 0.178301 CCTTCGAAACCCTAGCCTCC 59.822 60.000 0.00 0.00 0.00 4.30
114 115 0.178301 CCCTTCGAAACCCTAGCCTC 59.822 60.000 0.00 0.00 0.00 4.70
115 116 1.272554 CCCCTTCGAAACCCTAGCCT 61.273 60.000 0.00 0.00 0.00 4.58
117 118 0.178301 CTCCCCTTCGAAACCCTAGC 59.822 60.000 0.00 0.00 0.00 3.42
118 119 1.757699 CTCTCCCCTTCGAAACCCTAG 59.242 57.143 0.00 0.00 0.00 3.02
119 120 1.360162 TCTCTCCCCTTCGAAACCCTA 59.640 52.381 0.00 0.00 0.00 3.53
120 121 0.116541 TCTCTCCCCTTCGAAACCCT 59.883 55.000 0.00 0.00 0.00 4.34
122 123 1.478916 CTCTCTCTCCCCTTCGAAACC 59.521 57.143 0.00 0.00 0.00 3.27
123 124 2.425668 CTCTCTCTCTCCCCTTCGAAAC 59.574 54.545 0.00 0.00 0.00 2.78
124 125 2.621929 CCTCTCTCTCTCCCCTTCGAAA 60.622 54.545 0.00 0.00 0.00 3.46
125 126 1.064314 CCTCTCTCTCTCCCCTTCGAA 60.064 57.143 0.00 0.00 0.00 3.71
126 127 0.548989 CCTCTCTCTCTCCCCTTCGA 59.451 60.000 0.00 0.00 0.00 3.71
127 128 0.257616 ACCTCTCTCTCTCCCCTTCG 59.742 60.000 0.00 0.00 0.00 3.79
128 129 1.286553 TCACCTCTCTCTCTCCCCTTC 59.713 57.143 0.00 0.00 0.00 3.46
129 130 1.287739 CTCACCTCTCTCTCTCCCCTT 59.712 57.143 0.00 0.00 0.00 3.95
130 131 0.926293 CTCACCTCTCTCTCTCCCCT 59.074 60.000 0.00 0.00 0.00 4.79
132 133 0.755327 GCCTCACCTCTCTCTCTCCC 60.755 65.000 0.00 0.00 0.00 4.30
133 134 1.101049 CGCCTCACCTCTCTCTCTCC 61.101 65.000 0.00 0.00 0.00 3.71
148 554 2.042435 CTCCTCTTCCTCCCGCCT 60.042 66.667 0.00 0.00 0.00 5.52
150 556 2.131067 CCTCTCCTCTTCCTCCCGC 61.131 68.421 0.00 0.00 0.00 6.13
193 599 3.970640 CTCCCATAGAGAAAACCTAGCCT 59.029 47.826 0.00 0.00 46.50 4.58
208 614 0.704076 AAAAGGCAGTGGCTCCCATA 59.296 50.000 20.86 0.00 37.50 2.74
240 646 3.057596 TGAGGGCATTTTCGTCATTTCAC 60.058 43.478 0.00 0.00 0.00 3.18
262 668 2.093128 CACGTAATTCCCTTGCCCTACT 60.093 50.000 0.00 0.00 0.00 2.57
265 671 0.696501 ACACGTAATTCCCTTGCCCT 59.303 50.000 0.00 0.00 0.00 5.19
282 688 0.325933 CTCTCCTTCATGCCACCACA 59.674 55.000 0.00 0.00 0.00 4.17
284 690 0.547471 TCCTCTCCTTCATGCCACCA 60.547 55.000 0.00 0.00 0.00 4.17
292 698 6.445139 AGGAATGAATAGTTTCCTCTCCTTCA 59.555 38.462 0.00 0.00 47.00 3.02
319 725 0.389757 GGATCGAACCCTAGGCACTC 59.610 60.000 2.05 0.00 41.75 3.51
345 751 2.284921 CCACTGGAGAGAGCCCCA 60.285 66.667 0.00 0.00 0.00 4.96
349 756 0.540923 ATCAAGCCACTGGAGAGAGC 59.459 55.000 0.00 0.00 0.00 4.09
350 757 1.138661 GGATCAAGCCACTGGAGAGAG 59.861 57.143 0.00 0.00 0.00 3.20
351 758 1.198713 GGATCAAGCCACTGGAGAGA 58.801 55.000 0.00 0.00 0.00 3.10
358 765 1.689273 GGACTATCGGATCAAGCCACT 59.311 52.381 0.00 0.00 0.00 4.00
373 780 1.478916 TGTTTGATGCGATCCGGACTA 59.521 47.619 6.12 0.00 0.00 2.59
374 781 0.249120 TGTTTGATGCGATCCGGACT 59.751 50.000 6.12 0.00 0.00 3.85
376 783 1.466950 GTTTGTTTGATGCGATCCGGA 59.533 47.619 6.61 6.61 0.00 5.14
391 798 2.536673 GCCCGTCCGTTTCGTTTGT 61.537 57.895 0.00 0.00 0.00 2.83
408 815 1.832167 AGAGCTCAGGGAGATCCGC 60.832 63.158 17.77 0.00 44.98 5.54
446 853 6.072119 GGAAACATCCTAAAACAAGAACCGAT 60.072 38.462 0.00 0.00 0.00 4.18
467 874 0.106769 TTCAGGCAGCACACAGGAAA 60.107 50.000 0.00 0.00 0.00 3.13
528 939 1.202989 TCTCTAGCGGATCATGCTCCT 60.203 52.381 14.21 0.00 42.85 3.69
544 955 7.651304 GTGATGATCGTTTGACATTCTATCTCT 59.349 37.037 0.00 0.00 0.00 3.10
561 972 2.408050 GGAAATCTCCGGTGATGATCG 58.592 52.381 19.23 0.00 30.03 3.69
599 1031 1.360393 TGGGAAAGGAGGCAAGTGGT 61.360 55.000 0.00 0.00 0.00 4.16
656 1088 0.812412 CGGTTGGGATTTCGCCGTAT 60.812 55.000 0.00 0.00 37.87 3.06
707 1139 2.125912 CAGAGCGAACAGGGGTCG 60.126 66.667 0.00 0.00 37.02 4.79
900 1363 2.286121 GTGGGTGAGGGGATGGGA 60.286 66.667 0.00 0.00 0.00 4.37
994 1458 4.619233 ATCGGTCCCCATCGATCA 57.381 55.556 0.00 0.00 41.56 2.92
1266 1733 4.436998 CCGCTCGCGAACTCCCTT 62.437 66.667 11.33 0.00 42.83 3.95
1392 1859 1.833787 GAGGGTAAACGGACCTGCCA 61.834 60.000 3.77 0.00 39.66 4.92
1410 1883 1.292941 CCTCCTCCTCCTCCTCCTGA 61.293 65.000 0.00 0.00 0.00 3.86
1416 1889 0.105709 CTCCTTCCTCCTCCTCCTCC 60.106 65.000 0.00 0.00 0.00 4.30
1447 1920 1.878522 CCGCAGTAGTCATGGACGC 60.879 63.158 0.00 0.00 37.67 5.19
1592 2065 2.063015 TTGCGGTGAACAGGATGGGT 62.063 55.000 0.00 0.00 43.62 4.51
1705 2178 3.181967 CGAGGCGAAGAGTTGCGG 61.182 66.667 0.00 0.00 0.00 5.69
1975 2451 0.107831 CCCGAGTTGAACACCTTGGA 59.892 55.000 7.13 0.00 34.61 3.53
2031 2507 2.125552 CTCGCGATCACCTTGCCA 60.126 61.111 10.36 0.00 0.00 4.92
2325 2897 2.459060 TGTTGACGCCGAAAATCCTA 57.541 45.000 0.00 0.00 0.00 2.94
2370 2942 0.614979 CGGAGAAGACTTCCTCCCCA 60.615 60.000 19.57 0.00 44.66 4.96
2384 2956 4.710167 TCTCGGTCACGGCGGAGA 62.710 66.667 13.24 10.38 40.79 3.71
2445 3017 5.012328 AGTCTTTCCTTATTAGCACCTCG 57.988 43.478 0.00 0.00 0.00 4.63
2541 3120 3.126858 TGGCATAAAATCTGCGTGAAGAC 59.873 43.478 0.00 0.00 40.59 3.01
2542 3121 3.342719 TGGCATAAAATCTGCGTGAAGA 58.657 40.909 0.00 0.00 40.59 2.87
2577 3164 5.354234 CCCGTATGAGCTAAAAACTGTGAAT 59.646 40.000 0.00 0.00 0.00 2.57
2578 3165 4.693566 CCCGTATGAGCTAAAAACTGTGAA 59.306 41.667 0.00 0.00 0.00 3.18
2579 3166 4.250464 CCCGTATGAGCTAAAAACTGTGA 58.750 43.478 0.00 0.00 0.00 3.58
2580 3167 3.374058 CCCCGTATGAGCTAAAAACTGTG 59.626 47.826 0.00 0.00 0.00 3.66
2581 3168 3.262405 TCCCCGTATGAGCTAAAAACTGT 59.738 43.478 0.00 0.00 0.00 3.55
2582 3169 3.869065 TCCCCGTATGAGCTAAAAACTG 58.131 45.455 0.00 0.00 0.00 3.16
2583 3170 4.563140 TTCCCCGTATGAGCTAAAAACT 57.437 40.909 0.00 0.00 0.00 2.66
2584 3171 4.939439 TCTTTCCCCGTATGAGCTAAAAAC 59.061 41.667 0.00 0.00 0.00 2.43
2585 3172 5.168647 TCTTTCCCCGTATGAGCTAAAAA 57.831 39.130 0.00 0.00 0.00 1.94
2586 3173 4.829872 TCTTTCCCCGTATGAGCTAAAA 57.170 40.909 0.00 0.00 0.00 1.52
2638 3233 1.130749 GCTGACACTACTCGATCGTGT 59.869 52.381 24.28 24.28 43.89 4.49
2658 3253 7.838771 ACAGCTTTTATTACCTACTTAACCG 57.161 36.000 0.00 0.00 0.00 4.44
2708 3306 1.557371 TGAATCTGGGTTCGCCACATA 59.443 47.619 0.00 0.00 39.65 2.29
2709 3307 0.327924 TGAATCTGGGTTCGCCACAT 59.672 50.000 0.00 0.00 39.65 3.21
2710 3308 0.321564 CTGAATCTGGGTTCGCCACA 60.322 55.000 0.00 0.00 39.65 4.17
2711 3309 0.321653 ACTGAATCTGGGTTCGCCAC 60.322 55.000 0.00 0.00 39.65 5.01
2712 3310 0.321564 CACTGAATCTGGGTTCGCCA 60.322 55.000 0.00 0.00 39.65 5.69
2713 3311 0.321653 ACACTGAATCTGGGTTCGCC 60.322 55.000 0.00 0.00 0.00 5.54
2714 3312 0.798776 CACACTGAATCTGGGTTCGC 59.201 55.000 0.00 0.00 0.00 4.70
2715 3313 2.169832 ACACACTGAATCTGGGTTCG 57.830 50.000 0.00 0.00 0.00 3.95
2717 3315 6.121776 TGTAATACACACTGAATCTGGGTT 57.878 37.500 0.00 0.00 30.04 4.11
2718 3316 5.755409 TGTAATACACACTGAATCTGGGT 57.245 39.130 0.00 0.00 30.04 4.51
2737 3335 4.908601 ATCTGGGTGAAGACAATGTGTA 57.091 40.909 0.00 0.00 0.00 2.90
2738 3336 3.795688 ATCTGGGTGAAGACAATGTGT 57.204 42.857 0.00 0.00 0.00 3.72
2739 3337 4.330250 AGAATCTGGGTGAAGACAATGTG 58.670 43.478 0.00 0.00 0.00 3.21
2740 3338 4.647564 AGAATCTGGGTGAAGACAATGT 57.352 40.909 0.00 0.00 0.00 2.71
2762 3366 3.441222 TGCAACTGCGATGAAAATGAGAT 59.559 39.130 0.00 0.00 45.83 2.75
2771 3375 0.809636 CCGGTATGCAACTGCGATGA 60.810 55.000 0.00 0.00 45.83 2.92
2821 3431 7.648908 CACATGACAACTTTTGCTTCTGAAATA 59.351 33.333 0.00 0.00 0.00 1.40
2831 3441 3.374745 CTGACCACATGACAACTTTTGC 58.625 45.455 0.00 0.00 0.00 3.68
2843 3453 1.956477 GGTTGTTTCAGCTGACCACAT 59.044 47.619 22.72 0.00 0.00 3.21
2860 3470 4.400961 GGCAGAGCCGCAGAGGTT 62.401 66.667 0.00 0.00 39.62 3.50
2870 3480 2.019984 CATTACCCAAGAAGGCAGAGC 58.980 52.381 0.00 0.00 35.39 4.09
2871 3481 3.634397 TCATTACCCAAGAAGGCAGAG 57.366 47.619 0.00 0.00 35.39 3.35
3218 3831 0.953727 CACGCCCATACCAATCCATG 59.046 55.000 0.00 0.00 0.00 3.66
3219 3832 0.823356 GCACGCCCATACCAATCCAT 60.823 55.000 0.00 0.00 0.00 3.41
3220 3833 1.453015 GCACGCCCATACCAATCCA 60.453 57.895 0.00 0.00 0.00 3.41
3221 3834 2.193536 GGCACGCCCATACCAATCC 61.194 63.158 0.00 0.00 0.00 3.01
3222 3835 3.432186 GGCACGCCCATACCAATC 58.568 61.111 0.00 0.00 0.00 2.67
3239 3852 3.103911 GGTCGTCTTCCGTGCACG 61.104 66.667 31.77 31.77 37.94 5.34
3240 3853 3.103911 CGGTCGTCTTCCGTGCAC 61.104 66.667 6.82 6.82 42.62 4.57
3246 3859 0.391263 AGAAATGGCGGTCGTCTTCC 60.391 55.000 0.00 0.00 0.00 3.46
3247 3860 1.393883 GAAGAAATGGCGGTCGTCTTC 59.606 52.381 5.21 5.21 37.96 2.87
3248 3861 1.439679 GAAGAAATGGCGGTCGTCTT 58.560 50.000 0.00 0.00 0.00 3.01
3249 3862 0.736325 CGAAGAAATGGCGGTCGTCT 60.736 55.000 0.00 0.00 0.00 4.18
3250 3863 1.708027 CGAAGAAATGGCGGTCGTC 59.292 57.895 0.00 0.00 0.00 4.20
3251 3864 2.388232 GCGAAGAAATGGCGGTCGT 61.388 57.895 0.00 0.00 34.29 4.34
3252 3865 2.399611 GCGAAGAAATGGCGGTCG 59.600 61.111 0.00 0.00 34.89 4.79
3258 3871 2.100991 GCTGCCGCGAAGAAATGG 59.899 61.111 8.23 0.00 0.00 3.16
3259 3872 2.100991 GGCTGCCGCGAAGAAATG 59.899 61.111 8.23 0.00 36.88 2.32
3260 3873 2.359850 TGGCTGCCGCGAAGAAAT 60.360 55.556 14.98 0.00 36.88 2.17
3261 3874 3.353836 GTGGCTGCCGCGAAGAAA 61.354 61.111 17.46 0.00 36.88 2.52
3282 3895 0.250989 TTCCATTTCCCACGGTGACC 60.251 55.000 10.28 0.00 0.00 4.02
3283 3896 1.165270 CTTCCATTTCCCACGGTGAC 58.835 55.000 10.28 0.00 0.00 3.67
3284 3897 0.037590 CCTTCCATTTCCCACGGTGA 59.962 55.000 10.28 0.00 0.00 4.02
3285 3898 0.037590 TCCTTCCATTTCCCACGGTG 59.962 55.000 0.00 0.00 0.00 4.94
3286 3899 0.037734 GTCCTTCCATTTCCCACGGT 59.962 55.000 0.00 0.00 0.00 4.83
3287 3900 1.024579 CGTCCTTCCATTTCCCACGG 61.025 60.000 0.00 0.00 0.00 4.94
3288 3901 1.024579 CCGTCCTTCCATTTCCCACG 61.025 60.000 0.00 0.00 0.00 4.94
3289 3902 1.313091 GCCGTCCTTCCATTTCCCAC 61.313 60.000 0.00 0.00 0.00 4.61
3290 3903 1.001393 GCCGTCCTTCCATTTCCCA 60.001 57.895 0.00 0.00 0.00 4.37
3291 3904 2.112815 CGCCGTCCTTCCATTTCCC 61.113 63.158 0.00 0.00 0.00 3.97
3292 3905 0.463833 ATCGCCGTCCTTCCATTTCC 60.464 55.000 0.00 0.00 0.00 3.13
3293 3906 0.657840 CATCGCCGTCCTTCCATTTC 59.342 55.000 0.00 0.00 0.00 2.17
3294 3907 0.035439 ACATCGCCGTCCTTCCATTT 60.035 50.000 0.00 0.00 0.00 2.32
3295 3908 0.035439 AACATCGCCGTCCTTCCATT 60.035 50.000 0.00 0.00 0.00 3.16
3296 3909 0.462047 GAACATCGCCGTCCTTCCAT 60.462 55.000 0.00 0.00 0.00 3.41
3297 3910 1.079405 GAACATCGCCGTCCTTCCA 60.079 57.895 0.00 0.00 0.00 3.53
3298 3911 1.084370 CAGAACATCGCCGTCCTTCC 61.084 60.000 0.00 0.00 0.00 3.46
3299 3912 1.084370 CCAGAACATCGCCGTCCTTC 61.084 60.000 0.00 0.00 0.00 3.46
3300 3913 1.079127 CCAGAACATCGCCGTCCTT 60.079 57.895 0.00 0.00 0.00 3.36
3301 3914 1.982395 TCCAGAACATCGCCGTCCT 60.982 57.895 0.00 0.00 0.00 3.85
3302 3915 1.810030 GTCCAGAACATCGCCGTCC 60.810 63.158 0.00 0.00 0.00 4.79
3303 3916 0.389948 AAGTCCAGAACATCGCCGTC 60.390 55.000 0.00 0.00 0.00 4.79
3304 3917 0.389948 GAAGTCCAGAACATCGCCGT 60.390 55.000 0.00 0.00 0.00 5.68
3305 3918 0.389817 TGAAGTCCAGAACATCGCCG 60.390 55.000 0.00 0.00 0.00 6.46
3306 3919 1.936547 GATGAAGTCCAGAACATCGCC 59.063 52.381 0.00 0.00 31.74 5.54
3307 3920 2.898705 AGATGAAGTCCAGAACATCGC 58.101 47.619 0.00 0.00 42.35 4.58
3308 3921 3.620374 CCAAGATGAAGTCCAGAACATCG 59.380 47.826 0.00 0.00 42.35 3.84
3309 3922 3.376546 GCCAAGATGAAGTCCAGAACATC 59.623 47.826 0.00 0.00 39.24 3.06
3310 3923 3.009916 AGCCAAGATGAAGTCCAGAACAT 59.990 43.478 0.00 0.00 0.00 2.71
3311 3924 2.373169 AGCCAAGATGAAGTCCAGAACA 59.627 45.455 0.00 0.00 0.00 3.18
3312 3925 3.064900 AGCCAAGATGAAGTCCAGAAC 57.935 47.619 0.00 0.00 0.00 3.01
3313 3926 3.795688 AAGCCAAGATGAAGTCCAGAA 57.204 42.857 0.00 0.00 0.00 3.02
3314 3927 3.415212 CAAAGCCAAGATGAAGTCCAGA 58.585 45.455 0.00 0.00 0.00 3.86
3315 3928 2.490903 CCAAAGCCAAGATGAAGTCCAG 59.509 50.000 0.00 0.00 0.00 3.86
3316 3929 2.108075 TCCAAAGCCAAGATGAAGTCCA 59.892 45.455 0.00 0.00 0.00 4.02
3317 3930 2.751806 CTCCAAAGCCAAGATGAAGTCC 59.248 50.000 0.00 0.00 0.00 3.85
3318 3931 2.751806 CCTCCAAAGCCAAGATGAAGTC 59.248 50.000 0.00 0.00 0.00 3.01
3319 3932 2.376518 TCCTCCAAAGCCAAGATGAAGT 59.623 45.455 0.00 0.00 0.00 3.01
3320 3933 3.077484 TCCTCCAAAGCCAAGATGAAG 57.923 47.619 0.00 0.00 0.00 3.02
3321 3934 3.744940 ATCCTCCAAAGCCAAGATGAA 57.255 42.857 0.00 0.00 0.00 2.57
3322 3935 3.245371 ACAATCCTCCAAAGCCAAGATGA 60.245 43.478 0.00 0.00 0.00 2.92
3323 3936 3.094572 ACAATCCTCCAAAGCCAAGATG 58.905 45.455 0.00 0.00 0.00 2.90
3324 3937 3.094572 CACAATCCTCCAAAGCCAAGAT 58.905 45.455 0.00 0.00 0.00 2.40
3325 3938 2.517959 CACAATCCTCCAAAGCCAAGA 58.482 47.619 0.00 0.00 0.00 3.02
3326 3939 1.067354 GCACAATCCTCCAAAGCCAAG 60.067 52.381 0.00 0.00 0.00 3.61
3327 3940 0.968405 GCACAATCCTCCAAAGCCAA 59.032 50.000 0.00 0.00 0.00 4.52
3328 3941 0.899717 GGCACAATCCTCCAAAGCCA 60.900 55.000 0.00 0.00 40.29 4.75
3329 3942 1.607801 GGGCACAATCCTCCAAAGCC 61.608 60.000 0.00 0.00 39.86 4.35
3330 3943 0.613012 AGGGCACAATCCTCCAAAGC 60.613 55.000 0.00 0.00 0.00 3.51
3331 3944 1.467920 GAGGGCACAATCCTCCAAAG 58.532 55.000 0.00 0.00 43.71 2.77
3332 3945 0.322456 CGAGGGCACAATCCTCCAAA 60.322 55.000 4.74 0.00 46.01 3.28
3333 3946 1.299648 CGAGGGCACAATCCTCCAA 59.700 57.895 4.74 0.00 46.01 3.53
3334 3947 2.669133 CCGAGGGCACAATCCTCCA 61.669 63.158 4.74 0.00 46.01 3.86
3335 3948 2.190578 CCGAGGGCACAATCCTCC 59.809 66.667 4.74 0.00 46.01 4.30
3336 3949 2.190578 CCCGAGGGCACAATCCTC 59.809 66.667 0.00 0.00 45.46 3.71
3337 3950 2.285368 TCCCGAGGGCACAATCCT 60.285 61.111 2.58 0.00 37.33 3.24
3338 3951 2.124695 GTCCCGAGGGCACAATCC 60.125 66.667 2.58 0.00 34.68 3.01
3339 3952 0.815615 GATGTCCCGAGGGCACAATC 60.816 60.000 14.30 6.88 32.29 2.67
3340 3953 1.224592 GATGTCCCGAGGGCACAAT 59.775 57.895 14.30 2.22 32.29 2.71
3341 3954 2.668632 GATGTCCCGAGGGCACAA 59.331 61.111 14.30 0.00 32.29 3.33
3342 3955 3.770040 CGATGTCCCGAGGGCACA 61.770 66.667 2.58 9.29 34.68 4.57
3345 3958 4.593864 GAGCGATGTCCCGAGGGC 62.594 72.222 2.58 0.00 34.68 5.19
3346 3959 3.917760 GGAGCGATGTCCCGAGGG 61.918 72.222 0.65 0.65 0.00 4.30
3352 3965 1.040339 AGAGACTGGGAGCGATGTCC 61.040 60.000 0.00 0.00 35.64 4.02
3353 3966 1.335496 GTAGAGACTGGGAGCGATGTC 59.665 57.143 0.00 0.00 0.00 3.06
3354 3967 1.394618 GTAGAGACTGGGAGCGATGT 58.605 55.000 0.00 0.00 0.00 3.06
3355 3968 0.309302 CGTAGAGACTGGGAGCGATG 59.691 60.000 0.00 0.00 0.00 3.84
3356 3969 0.180642 TCGTAGAGACTGGGAGCGAT 59.819 55.000 0.00 0.00 0.00 4.58
3357 3970 0.180642 ATCGTAGAGACTGGGAGCGA 59.819 55.000 0.00 0.00 43.63 4.93
3358 3971 0.589223 GATCGTAGAGACTGGGAGCG 59.411 60.000 0.00 0.00 43.63 5.03
3359 3972 1.877443 GAGATCGTAGAGACTGGGAGC 59.123 57.143 0.00 0.00 43.63 4.70
3360 3973 3.071023 AGAGAGATCGTAGAGACTGGGAG 59.929 52.174 0.00 0.00 43.63 4.30
3361 3974 3.042682 AGAGAGATCGTAGAGACTGGGA 58.957 50.000 0.00 0.00 43.63 4.37
3362 3975 3.399330 GAGAGAGATCGTAGAGACTGGG 58.601 54.545 0.00 0.00 43.63 4.45
3363 3976 3.399330 GGAGAGAGATCGTAGAGACTGG 58.601 54.545 0.00 0.00 43.63 4.00
3364 3977 3.181459 TGGGAGAGAGATCGTAGAGACTG 60.181 52.174 0.00 0.00 43.63 3.51
3365 3978 3.042682 TGGGAGAGAGATCGTAGAGACT 58.957 50.000 0.00 0.00 43.63 3.24
3366 3979 3.478857 TGGGAGAGAGATCGTAGAGAC 57.521 52.381 0.00 0.00 43.63 3.36
3367 3980 3.181449 CCTTGGGAGAGAGATCGTAGAGA 60.181 52.174 0.00 0.00 43.63 3.10
3368 3981 3.146066 CCTTGGGAGAGAGATCGTAGAG 58.854 54.545 0.00 0.00 43.63 2.43
3369 3982 2.778270 TCCTTGGGAGAGAGATCGTAGA 59.222 50.000 0.00 0.00 45.75 2.59
3370 3983 3.216187 TCCTTGGGAGAGAGATCGTAG 57.784 52.381 0.00 0.00 0.00 3.51
3371 3984 3.664551 TTCCTTGGGAGAGAGATCGTA 57.335 47.619 0.00 0.00 31.21 3.43
3372 3985 2.534042 TTCCTTGGGAGAGAGATCGT 57.466 50.000 0.00 0.00 31.21 3.73
3373 3986 3.196685 AGTTTTCCTTGGGAGAGAGATCG 59.803 47.826 0.00 0.00 31.21 3.69
3374 3987 4.679372 CGAGTTTTCCTTGGGAGAGAGATC 60.679 50.000 0.00 0.00 31.21 2.75
3375 3988 3.196685 CGAGTTTTCCTTGGGAGAGAGAT 59.803 47.826 0.00 0.00 31.21 2.75
3376 3989 2.563179 CGAGTTTTCCTTGGGAGAGAGA 59.437 50.000 0.00 0.00 31.21 3.10
3377 3990 2.354203 CCGAGTTTTCCTTGGGAGAGAG 60.354 54.545 0.00 0.00 40.69 3.20
3378 3991 1.623811 CCGAGTTTTCCTTGGGAGAGA 59.376 52.381 0.00 0.00 40.69 3.10
3379 3992 2.100605 CCGAGTTTTCCTTGGGAGAG 57.899 55.000 0.00 0.00 40.69 3.20
3385 3998 4.537015 CTTGCTAAACCGAGTTTTCCTTG 58.463 43.478 7.22 0.00 37.01 3.61
3386 3999 3.004419 GCTTGCTAAACCGAGTTTTCCTT 59.996 43.478 7.22 0.00 37.01 3.36
3387 4000 2.552743 GCTTGCTAAACCGAGTTTTCCT 59.447 45.455 7.22 0.00 37.01 3.36
3388 4001 2.552743 AGCTTGCTAAACCGAGTTTTCC 59.447 45.455 7.22 1.58 37.01 3.13
3389 4002 3.898517 AGCTTGCTAAACCGAGTTTTC 57.101 42.857 7.22 2.48 37.01 2.29
3390 4003 4.156008 CCATAGCTTGCTAAACCGAGTTTT 59.844 41.667 6.42 0.00 37.01 2.43
3391 4004 3.689649 CCATAGCTTGCTAAACCGAGTTT 59.310 43.478 6.42 7.11 39.24 2.66
3392 4005 3.270877 CCATAGCTTGCTAAACCGAGTT 58.729 45.455 6.42 0.00 0.00 3.01
3393 4006 2.906354 CCATAGCTTGCTAAACCGAGT 58.094 47.619 6.42 0.00 0.00 4.18
3394 4007 1.599542 GCCATAGCTTGCTAAACCGAG 59.400 52.381 6.42 0.00 35.50 4.63
3395 4008 1.663695 GCCATAGCTTGCTAAACCGA 58.336 50.000 6.42 0.00 35.50 4.69
3396 4009 0.663153 GGCCATAGCTTGCTAAACCG 59.337 55.000 6.42 0.00 39.73 4.44
3397 4010 1.762708 TGGCCATAGCTTGCTAAACC 58.237 50.000 0.00 8.72 39.73 3.27
3398 4011 2.491693 TGTTGGCCATAGCTTGCTAAAC 59.508 45.455 6.09 6.78 39.73 2.01
3399 4012 2.801483 TGTTGGCCATAGCTTGCTAAA 58.199 42.857 6.09 0.00 39.73 1.85
3400 4013 2.491693 GTTGTTGGCCATAGCTTGCTAA 59.508 45.455 6.09 0.00 39.73 3.09
3401 4014 2.091541 GTTGTTGGCCATAGCTTGCTA 58.908 47.619 6.09 4.72 39.73 3.49
3402 4015 0.890683 GTTGTTGGCCATAGCTTGCT 59.109 50.000 6.09 0.00 39.73 3.91
3403 4016 0.108662 GGTTGTTGGCCATAGCTTGC 60.109 55.000 6.09 0.00 39.73 4.01
3404 4017 0.171007 CGGTTGTTGGCCATAGCTTG 59.829 55.000 6.09 0.00 39.73 4.01
3405 4018 0.965363 CCGGTTGTTGGCCATAGCTT 60.965 55.000 6.09 0.00 39.73 3.74
3406 4019 1.378514 CCGGTTGTTGGCCATAGCT 60.379 57.895 6.09 0.00 39.73 3.32
3407 4020 1.677633 ACCGGTTGTTGGCCATAGC 60.678 57.895 6.09 4.06 38.76 2.97
3408 4021 1.312371 CCACCGGTTGTTGGCCATAG 61.312 60.000 6.09 0.00 0.00 2.23
3409 4022 1.303724 CCACCGGTTGTTGGCCATA 60.304 57.895 6.09 0.00 0.00 2.74
3410 4023 2.439553 ATCCACCGGTTGTTGGCCAT 62.440 55.000 6.09 0.00 0.00 4.40
3411 4024 2.648613 AATCCACCGGTTGTTGGCCA 62.649 55.000 2.97 0.00 0.00 5.36
3412 4025 1.906333 AATCCACCGGTTGTTGGCC 60.906 57.895 2.97 0.00 0.00 5.36
3413 4026 1.288752 CAATCCACCGGTTGTTGGC 59.711 57.895 2.97 0.00 0.00 4.52
3414 4027 1.288752 GCAATCCACCGGTTGTTGG 59.711 57.895 19.34 12.63 0.00 3.77
3415 4028 1.081509 CGCAATCCACCGGTTGTTG 60.082 57.895 2.97 11.67 0.00 3.33
3416 4029 0.820074 TTCGCAATCCACCGGTTGTT 60.820 50.000 2.97 0.00 0.00 2.83
3417 4030 0.608035 ATTCGCAATCCACCGGTTGT 60.608 50.000 2.97 0.00 0.00 3.32
3418 4031 1.374560 TATTCGCAATCCACCGGTTG 58.625 50.000 2.97 0.00 0.00 3.77
3419 4032 2.341846 ATATTCGCAATCCACCGGTT 57.658 45.000 2.97 0.00 0.00 4.44
3420 4033 1.946768 CAATATTCGCAATCCACCGGT 59.053 47.619 0.00 0.00 0.00 5.28
3421 4034 2.032030 GTCAATATTCGCAATCCACCGG 60.032 50.000 0.00 0.00 0.00 5.28
3422 4035 3.253371 GTCAATATTCGCAATCCACCG 57.747 47.619 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.