Multiple sequence alignment - TraesCS3B01G435500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G435500 | chr3B | 100.000 | 2716 | 0 | 0 | 1 | 2716 | 673848032 | 673845317 | 0.000000e+00 | 5016.0 |
1 | TraesCS3B01G435500 | chr3B | 100.000 | 279 | 0 | 0 | 2871 | 3149 | 673845162 | 673844884 | 1.670000e-142 | 516.0 |
2 | TraesCS3B01G435500 | chr3B | 91.667 | 204 | 8 | 1 | 2513 | 2716 | 673840480 | 673840286 | 1.110000e-69 | 274.0 |
3 | TraesCS3B01G435500 | chr3B | 100.000 | 35 | 0 | 0 | 428 | 462 | 743799306 | 743799340 | 7.290000e-07 | 65.8 |
4 | TraesCS3B01G435500 | chr3A | 92.018 | 1992 | 108 | 16 | 509 | 2465 | 647690828 | 647688853 | 0.000000e+00 | 2750.0 |
5 | TraesCS3B01G435500 | chr3A | 95.699 | 279 | 12 | 0 | 2871 | 3149 | 18136222 | 18136500 | 1.720000e-122 | 449.0 |
6 | TraesCS3B01G435500 | chr3A | 85.284 | 299 | 24 | 6 | 38 | 320 | 647691555 | 647691261 | 1.100000e-74 | 291.0 |
7 | TraesCS3B01G435500 | chr3A | 89.756 | 205 | 17 | 3 | 2514 | 2716 | 18135969 | 18136171 | 3.120000e-65 | 259.0 |
8 | TraesCS3B01G435500 | chr3A | 90.698 | 86 | 5 | 1 | 322 | 407 | 647691174 | 647691092 | 9.230000e-21 | 111.0 |
9 | TraesCS3B01G435500 | chr7A | 81.994 | 933 | 140 | 12 | 1015 | 1945 | 550052079 | 550052985 | 0.000000e+00 | 767.0 |
10 | TraesCS3B01G435500 | chr7D | 81.886 | 933 | 141 | 12 | 1015 | 1945 | 483877550 | 483878456 | 0.000000e+00 | 761.0 |
11 | TraesCS3B01G435500 | chr7D | 93.907 | 279 | 17 | 0 | 2871 | 3149 | 27286774 | 27286496 | 3.760000e-114 | 422.0 |
12 | TraesCS3B01G435500 | chr7D | 86.538 | 208 | 15 | 8 | 2513 | 2716 | 27282087 | 27281889 | 1.900000e-52 | 217.0 |
13 | TraesCS3B01G435500 | chr7B | 81.458 | 933 | 145 | 12 | 1015 | 1945 | 509512380 | 509513286 | 0.000000e+00 | 739.0 |
14 | TraesCS3B01G435500 | chr7B | 97.491 | 279 | 7 | 0 | 2871 | 3149 | 735294923 | 735295201 | 7.900000e-131 | 477.0 |
15 | TraesCS3B01G435500 | chr7B | 94.265 | 279 | 16 | 0 | 2871 | 3149 | 14899626 | 14899348 | 8.070000e-116 | 427.0 |
16 | TraesCS3B01G435500 | chr7B | 95.567 | 203 | 8 | 1 | 2515 | 2716 | 735294670 | 735294872 | 1.090000e-84 | 324.0 |
17 | TraesCS3B01G435500 | chr7B | 95.588 | 204 | 6 | 2 | 2513 | 2715 | 735299798 | 735299999 | 1.090000e-84 | 324.0 |
18 | TraesCS3B01G435500 | chr7B | 91.748 | 206 | 13 | 3 | 2513 | 2716 | 14894952 | 14894749 | 1.850000e-72 | 283.0 |
19 | TraesCS3B01G435500 | chr7B | 90.686 | 204 | 15 | 3 | 2515 | 2716 | 14899878 | 14899677 | 5.180000e-68 | 268.0 |
20 | TraesCS3B01G435500 | chr7B | 100.000 | 29 | 0 | 0 | 431 | 459 | 633689129 | 633689157 | 2.000000e-03 | 54.7 |
21 | TraesCS3B01G435500 | chr4D | 96.774 | 279 | 9 | 0 | 2871 | 3149 | 480981899 | 480982177 | 1.710000e-127 | 466.0 |
22 | TraesCS3B01G435500 | chr4D | 95.050 | 202 | 10 | 0 | 2515 | 2716 | 480981647 | 480981848 | 5.070000e-83 | 318.0 |
23 | TraesCS3B01G435500 | chr1D | 96.416 | 279 | 10 | 0 | 2871 | 3149 | 391722311 | 391722033 | 7.960000e-126 | 460.0 |
24 | TraesCS3B01G435500 | chr5A | 95.699 | 279 | 12 | 0 | 2871 | 3149 | 539016067 | 539015789 | 1.720000e-122 | 449.0 |
25 | TraesCS3B01G435500 | chr4B | 94.265 | 279 | 16 | 0 | 2871 | 3149 | 624467841 | 624468119 | 8.070000e-116 | 427.0 |
26 | TraesCS3B01G435500 | chr4B | 88.293 | 205 | 19 | 3 | 2515 | 2716 | 624467588 | 624467790 | 1.130000e-59 | 241.0 |
27 | TraesCS3B01G435500 | chr6A | 93.907 | 279 | 17 | 0 | 2871 | 3149 | 14399324 | 14399046 | 3.760000e-114 | 422.0 |
28 | TraesCS3B01G435500 | chr2A | 81.875 | 160 | 10 | 6 | 96 | 241 | 15527447 | 15527293 | 1.980000e-22 | 117.0 |
29 | TraesCS3B01G435500 | chr2A | 80.380 | 158 | 12 | 6 | 96 | 239 | 15528289 | 15528441 | 5.560000e-18 | 102.0 |
30 | TraesCS3B01G435500 | chr2A | 93.750 | 64 | 4 | 0 | 249 | 312 | 657530294 | 657530357 | 2.590000e-16 | 97.1 |
31 | TraesCS3B01G435500 | chr2A | 91.837 | 49 | 3 | 1 | 410 | 458 | 144859207 | 144859254 | 2.030000e-07 | 67.6 |
32 | TraesCS3B01G435500 | chr2A | 85.075 | 67 | 5 | 5 | 249 | 311 | 144858932 | 144858997 | 2.620000e-06 | 63.9 |
33 | TraesCS3B01G435500 | chr3D | 87.629 | 97 | 6 | 4 | 152 | 247 | 25107924 | 25107833 | 1.190000e-19 | 108.0 |
34 | TraesCS3B01G435500 | chrUn | 86.667 | 90 | 8 | 2 | 152 | 241 | 99393005 | 99393090 | 2.590000e-16 | 97.1 |
35 | TraesCS3B01G435500 | chrUn | 97.436 | 39 | 1 | 0 | 425 | 463 | 42055583 | 42055621 | 2.030000e-07 | 67.6 |
36 | TraesCS3B01G435500 | chr6B | 86.667 | 90 | 8 | 2 | 152 | 241 | 656201590 | 656201505 | 2.590000e-16 | 97.1 |
37 | TraesCS3B01G435500 | chr2B | 85.417 | 96 | 9 | 3 | 151 | 246 | 773077535 | 773077625 | 9.300000e-16 | 95.3 |
38 | TraesCS3B01G435500 | chr2B | 86.207 | 58 | 3 | 4 | 258 | 311 | 212580574 | 212580518 | 1.220000e-04 | 58.4 |
39 | TraesCS3B01G435500 | chr2B | 100.000 | 31 | 0 | 0 | 429 | 459 | 766052666 | 766052636 | 1.220000e-04 | 58.4 |
40 | TraesCS3B01G435500 | chr6D | 100.000 | 34 | 0 | 0 | 426 | 459 | 258190308 | 258190275 | 2.620000e-06 | 63.9 |
41 | TraesCS3B01G435500 | chr2D | 86.207 | 58 | 3 | 4 | 258 | 311 | 155453334 | 155453278 | 1.220000e-04 | 58.4 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G435500 | chr3B | 673844884 | 673848032 | 3148 | True | 2766.000000 | 5016 | 100.000000 | 1 | 3149 | 2 | chr3B.!!$R2 | 3148 |
1 | TraesCS3B01G435500 | chr3A | 647688853 | 647691555 | 2702 | True | 1050.666667 | 2750 | 89.333333 | 38 | 2465 | 3 | chr3A.!!$R1 | 2427 |
2 | TraesCS3B01G435500 | chr3A | 18135969 | 18136500 | 531 | False | 354.000000 | 449 | 92.727500 | 2514 | 3149 | 2 | chr3A.!!$F1 | 635 |
3 | TraesCS3B01G435500 | chr7A | 550052079 | 550052985 | 906 | False | 767.000000 | 767 | 81.994000 | 1015 | 1945 | 1 | chr7A.!!$F1 | 930 |
4 | TraesCS3B01G435500 | chr7D | 483877550 | 483878456 | 906 | False | 761.000000 | 761 | 81.886000 | 1015 | 1945 | 1 | chr7D.!!$F1 | 930 |
5 | TraesCS3B01G435500 | chr7B | 509512380 | 509513286 | 906 | False | 739.000000 | 739 | 81.458000 | 1015 | 1945 | 1 | chr7B.!!$F1 | 930 |
6 | TraesCS3B01G435500 | chr7B | 735294670 | 735295201 | 531 | False | 400.500000 | 477 | 96.529000 | 2515 | 3149 | 2 | chr7B.!!$F4 | 634 |
7 | TraesCS3B01G435500 | chr7B | 14899348 | 14899878 | 530 | True | 347.500000 | 427 | 92.475500 | 2515 | 3149 | 2 | chr7B.!!$R2 | 634 |
8 | TraesCS3B01G435500 | chr4D | 480981647 | 480982177 | 530 | False | 392.000000 | 466 | 95.912000 | 2515 | 3149 | 2 | chr4D.!!$F1 | 634 |
9 | TraesCS3B01G435500 | chr4B | 624467588 | 624468119 | 531 | False | 334.000000 | 427 | 91.279000 | 2515 | 3149 | 2 | chr4B.!!$F1 | 634 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
405 | 507 | 0.103572 | ATGCAATCAATTCCCGCAGC | 59.896 | 50.0 | 0.00 | 0.0 | 35.79 | 5.25 | F |
889 | 1197 | 0.108585 | AAAGGCAGAGAAACGGCAGA | 59.891 | 50.0 | 0.00 | 0.0 | 41.24 | 4.26 | F |
1858 | 2181 | 0.030235 | CGAACGTATCCGAGGATGCA | 59.970 | 55.0 | 17.94 | 0.0 | 37.12 | 3.96 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1820 | 2143 | 0.169009 | GTGTCAAGCGCTTCCATTCC | 59.831 | 55.000 | 22.21 | 4.8 | 0.00 | 3.01 | R |
2033 | 2357 | 0.179124 | GAACGTTGGGCACTGCAAAA | 60.179 | 50.000 | 5.00 | 0.0 | 0.00 | 2.44 | R |
2951 | 3287 | 1.136224 | GTAGCTCGCAAACTGCTTGAC | 60.136 | 52.381 | 0.00 | 0.0 | 42.25 | 3.18 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
31 | 32 | 8.268850 | TCATTTCTTTCTCTGTATTTACTGCC | 57.731 | 34.615 | 0.00 | 0.00 | 0.00 | 4.85 |
32 | 33 | 7.882791 | TCATTTCTTTCTCTGTATTTACTGCCA | 59.117 | 33.333 | 0.00 | 0.00 | 0.00 | 4.92 |
33 | 34 | 8.680903 | CATTTCTTTCTCTGTATTTACTGCCAT | 58.319 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
34 | 35 | 8.635765 | TTTCTTTCTCTGTATTTACTGCCATT | 57.364 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
35 | 36 | 8.635765 | TTCTTTCTCTGTATTTACTGCCATTT | 57.364 | 30.769 | 0.00 | 0.00 | 0.00 | 2.32 |
36 | 37 | 8.635765 | TCTTTCTCTGTATTTACTGCCATTTT | 57.364 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
65 | 66 | 9.691362 | TTTCTTTCCTTTTCCTCATTTTATTCG | 57.309 | 29.630 | 0.00 | 0.00 | 0.00 | 3.34 |
74 | 75 | 3.387699 | CCTCATTTTATTCGGGGCCAAAT | 59.612 | 43.478 | 4.39 | 7.26 | 0.00 | 2.32 |
75 | 76 | 4.501400 | CCTCATTTTATTCGGGGCCAAATC | 60.501 | 45.833 | 4.39 | 0.00 | 0.00 | 2.17 |
78 | 79 | 0.256464 | TTATTCGGGGCCAAATCCGT | 59.744 | 50.000 | 16.44 | 2.79 | 45.79 | 4.69 |
79 | 80 | 0.256464 | TATTCGGGGCCAAATCCGTT | 59.744 | 50.000 | 16.44 | 9.11 | 45.79 | 4.44 |
92 | 93 | 6.199393 | GCCAAATCCGTTGATCTGTATTTAC | 58.801 | 40.000 | 0.00 | 0.00 | 39.87 | 2.01 |
97 | 98 | 4.081365 | TCCGTTGATCTGTATTTACTGCCA | 60.081 | 41.667 | 0.00 | 0.00 | 0.00 | 4.92 |
98 | 99 | 4.034048 | CCGTTGATCTGTATTTACTGCCAC | 59.966 | 45.833 | 0.00 | 0.00 | 0.00 | 5.01 |
106 | 108 | 4.260985 | TGTATTTACTGCCACCTGTCATG | 58.739 | 43.478 | 0.00 | 0.00 | 0.00 | 3.07 |
120 | 122 | 5.178252 | CACCTGTCATGAACTCACTTAACAG | 59.822 | 44.000 | 0.00 | 0.00 | 0.00 | 3.16 |
122 | 124 | 4.641396 | TGTCATGAACTCACTTAACAGGG | 58.359 | 43.478 | 0.00 | 0.00 | 0.00 | 4.45 |
123 | 125 | 3.437049 | GTCATGAACTCACTTAACAGGGC | 59.563 | 47.826 | 0.00 | 0.00 | 0.00 | 5.19 |
125 | 127 | 2.054799 | TGAACTCACTTAACAGGGCCT | 58.945 | 47.619 | 0.00 | 0.00 | 0.00 | 5.19 |
149 | 151 | 0.591170 | CGCCGATCAGTGGTTTTTGT | 59.409 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
225 | 239 | 4.134563 | TCTAGCCTTCAAAGTGGTGTTTC | 58.865 | 43.478 | 0.00 | 0.00 | 0.00 | 2.78 |
240 | 257 | 6.756542 | AGTGGTGTTTCTTTTGCAATTTACTC | 59.243 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
278 | 295 | 8.970691 | ACTTATATTTCTTTCAACATGCACAC | 57.029 | 30.769 | 0.00 | 0.00 | 0.00 | 3.82 |
293 | 310 | 0.329261 | CACACATCCCACCTCACCAT | 59.671 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
299 | 316 | 0.546122 | TCCCACCTCACCATACATGC | 59.454 | 55.000 | 0.00 | 0.00 | 0.00 | 4.06 |
313 | 330 | 4.342951 | CCATACATGCCACCTCATCAAATT | 59.657 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
320 | 337 | 6.000246 | TGCCACCTCATCAAATTCACTATA | 58.000 | 37.500 | 0.00 | 0.00 | 0.00 | 1.31 |
401 | 503 | 8.815141 | TCAAAATATAATGCAATCAATTCCCG | 57.185 | 30.769 | 0.00 | 0.00 | 0.00 | 5.14 |
402 | 504 | 7.384660 | TCAAAATATAATGCAATCAATTCCCGC | 59.615 | 33.333 | 0.00 | 0.00 | 0.00 | 6.13 |
403 | 505 | 5.981088 | ATATAATGCAATCAATTCCCGCA | 57.019 | 34.783 | 0.00 | 0.00 | 36.95 | 5.69 |
404 | 506 | 2.589798 | AATGCAATCAATTCCCGCAG | 57.410 | 45.000 | 0.00 | 0.00 | 35.79 | 5.18 |
405 | 507 | 0.103572 | ATGCAATCAATTCCCGCAGC | 59.896 | 50.000 | 0.00 | 0.00 | 35.79 | 5.25 |
406 | 508 | 1.249469 | TGCAATCAATTCCCGCAGCA | 61.249 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
407 | 509 | 0.803380 | GCAATCAATTCCCGCAGCAC | 60.803 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
408 | 510 | 0.527113 | CAATCAATTCCCGCAGCACA | 59.473 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
409 | 511 | 1.067706 | CAATCAATTCCCGCAGCACAA | 60.068 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
410 | 512 | 1.255882 | ATCAATTCCCGCAGCACAAA | 58.744 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
411 | 513 | 1.035923 | TCAATTCCCGCAGCACAAAA | 58.964 | 45.000 | 0.00 | 0.00 | 0.00 | 2.44 |
412 | 514 | 1.617850 | TCAATTCCCGCAGCACAAAAT | 59.382 | 42.857 | 0.00 | 0.00 | 0.00 | 1.82 |
413 | 515 | 2.822561 | TCAATTCCCGCAGCACAAAATA | 59.177 | 40.909 | 0.00 | 0.00 | 0.00 | 1.40 |
440 | 542 | 1.067706 | CAATCAATTCCCGCAGCAACA | 60.068 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
452 | 554 | 0.321210 | CAGCAACACGTGGGGTATCA | 60.321 | 55.000 | 21.57 | 0.00 | 0.00 | 2.15 |
463 | 565 | 4.771054 | ACGTGGGGTATCATCTAGTATTCC | 59.229 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
464 | 566 | 4.159879 | CGTGGGGTATCATCTAGTATTCCC | 59.840 | 50.000 | 7.95 | 7.95 | 0.00 | 3.97 |
489 | 591 | 0.319813 | AAGGCATTGAAAAGTGGCGC | 60.320 | 50.000 | 0.00 | 0.00 | 44.68 | 6.53 |
495 | 597 | 3.729462 | GCATTGAAAAGTGGCGCGTTATA | 60.729 | 43.478 | 8.43 | 0.00 | 0.00 | 0.98 |
505 | 607 | 1.599419 | GGCGCGTTATATTGGCAAAGG | 60.599 | 52.381 | 8.43 | 0.00 | 0.00 | 3.11 |
565 | 861 | 2.012673 | GAATAGAAGGCAGCACACCTG | 58.987 | 52.381 | 0.00 | 0.00 | 44.67 | 4.00 |
597 | 893 | 5.119694 | GGTGTGTTATTTTGGCAAAGGAAA | 58.880 | 37.500 | 13.04 | 6.23 | 0.00 | 3.13 |
598 | 894 | 5.586643 | GGTGTGTTATTTTGGCAAAGGAAAA | 59.413 | 36.000 | 13.04 | 3.96 | 0.00 | 2.29 |
599 | 895 | 6.262049 | GGTGTGTTATTTTGGCAAAGGAAAAT | 59.738 | 34.615 | 13.04 | 6.08 | 36.14 | 1.82 |
632 | 928 | 2.270352 | ATGAAGCAAACGTGGAGGAA | 57.730 | 45.000 | 0.00 | 0.00 | 0.00 | 3.36 |
712 | 1008 | 3.128589 | GTGGCAATCATCGGTGTGTTATT | 59.871 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
775 | 1073 | 6.725246 | AGAGGAAAGTTGTGTTATTTTGTCG | 58.275 | 36.000 | 0.00 | 0.00 | 0.00 | 4.35 |
783 | 1081 | 7.360361 | AGTTGTGTTATTTTGTCGAAATCCTC | 58.640 | 34.615 | 1.05 | 0.00 | 38.80 | 3.71 |
845 | 1153 | 2.748605 | TGCGTTATTTTGGCAAAGGTG | 58.251 | 42.857 | 13.04 | 4.39 | 33.01 | 4.00 |
850 | 1158 | 4.709250 | GTTATTTTGGCAAAGGTGGGAAA | 58.291 | 39.130 | 13.04 | 0.00 | 0.00 | 3.13 |
889 | 1197 | 0.108585 | AAAGGCAGAGAAACGGCAGA | 59.891 | 50.000 | 0.00 | 0.00 | 41.24 | 4.26 |
896 | 1204 | 3.684788 | GCAGAGAAACGGCAGAGAAAATA | 59.315 | 43.478 | 0.00 | 0.00 | 39.38 | 1.40 |
932 | 1240 | 2.250939 | ACGCCCACACAATGACACG | 61.251 | 57.895 | 0.00 | 0.00 | 0.00 | 4.49 |
945 | 1253 | 6.646653 | ACACAATGACACGATCCATACATATC | 59.353 | 38.462 | 0.00 | 0.00 | 0.00 | 1.63 |
949 | 1257 | 6.013842 | TGACACGATCCATACATATCTGTC | 57.986 | 41.667 | 0.00 | 0.00 | 36.79 | 3.51 |
1009 | 1317 | 5.958955 | TGTCTAGTCTCATCACATTCACAG | 58.041 | 41.667 | 0.00 | 0.00 | 0.00 | 3.66 |
1010 | 1318 | 5.105595 | TGTCTAGTCTCATCACATTCACAGG | 60.106 | 44.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1023 | 1331 | 0.610174 | TCACAGGCTCCTAGCACAAG | 59.390 | 55.000 | 0.78 | 0.00 | 44.75 | 3.16 |
1084 | 1401 | 2.649742 | TCCTCAAGACCTCATTCCCT | 57.350 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1170 | 1487 | 0.907486 | TGCAACTCCATCTCCTCCTG | 59.093 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1222 | 1539 | 3.011032 | AGTTCAGCCCCATGAAAGAATCT | 59.989 | 43.478 | 0.00 | 0.00 | 40.72 | 2.40 |
1234 | 1551 | 1.258445 | AAGAATCTGTCGCCTCCCGT | 61.258 | 55.000 | 0.00 | 0.00 | 38.35 | 5.28 |
1246 | 1563 | 0.823769 | CCTCCCGTGAGATGATCCGA | 60.824 | 60.000 | 0.00 | 0.00 | 41.42 | 4.55 |
1351 | 1668 | 1.985116 | GCTCTCCAAGGACCCGTCT | 60.985 | 63.158 | 0.00 | 0.00 | 0.00 | 4.18 |
1354 | 1671 | 0.471211 | TCTCCAAGGACCCGTCTGTT | 60.471 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1356 | 1673 | 1.621814 | CTCCAAGGACCCGTCTGTTAA | 59.378 | 52.381 | 0.00 | 0.00 | 0.00 | 2.01 |
1370 | 1687 | 3.248602 | GTCTGTTAACATCGCCATCATCC | 59.751 | 47.826 | 9.13 | 0.00 | 0.00 | 3.51 |
1372 | 1689 | 3.615155 | TGTTAACATCGCCATCATCCAA | 58.385 | 40.909 | 3.59 | 0.00 | 0.00 | 3.53 |
1462 | 1779 | 2.496817 | GCGCACCTCTTCCTCGAT | 59.503 | 61.111 | 0.30 | 0.00 | 0.00 | 3.59 |
1465 | 1782 | 0.173481 | CGCACCTCTTCCTCGATGAA | 59.827 | 55.000 | 3.05 | 3.05 | 0.00 | 2.57 |
1516 | 1833 | 0.321919 | ACGTGGTCATCAAGCATGCT | 60.322 | 50.000 | 16.30 | 16.30 | 44.57 | 3.79 |
1576 | 1893 | 1.172812 | GGCCCAACGTGAAGCTCTTT | 61.173 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1598 | 1915 | 2.254651 | GCGTCGTCGTGGAAGACT | 59.745 | 61.111 | 3.66 | 0.00 | 38.52 | 3.24 |
1601 | 1918 | 1.002250 | CGTCGTCGTGGAAGACTTGG | 61.002 | 60.000 | 9.38 | 0.00 | 38.52 | 3.61 |
1603 | 1920 | 0.748450 | TCGTCGTGGAAGACTTGGTT | 59.252 | 50.000 | 0.00 | 0.00 | 38.90 | 3.67 |
1615 | 1932 | 3.825328 | AGACTTGGTTGTCAAAGAGCAT | 58.175 | 40.909 | 0.00 | 0.00 | 39.27 | 3.79 |
1622 | 1939 | 0.319469 | TGTCAAAGAGCATCGCGTCA | 60.319 | 50.000 | 5.77 | 0.00 | 42.67 | 4.35 |
1627 | 1944 | 4.796231 | GAGCATCGCGTCACCGGT | 62.796 | 66.667 | 0.00 | 0.00 | 33.68 | 5.28 |
1678 | 2001 | 0.908910 | ACCAGGACACACACTCACAA | 59.091 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
1679 | 2002 | 1.280710 | ACCAGGACACACACTCACAAA | 59.719 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
1687 | 2010 | 3.755905 | ACACACACTCACAAACACAATCA | 59.244 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
1723 | 2046 | 2.481276 | CGTCATGGAAGCCAAGATCGTA | 60.481 | 50.000 | 0.00 | 0.00 | 36.95 | 3.43 |
1765 | 2088 | 3.153024 | GCTATTCAGTGCCAACGGA | 57.847 | 52.632 | 0.00 | 0.00 | 0.00 | 4.69 |
1814 | 2137 | 0.394352 | AATGATCAAGACGGTGCCCC | 60.394 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
1844 | 2167 | 1.154836 | GAAGCGCTTGACACGAACG | 60.155 | 57.895 | 30.47 | 0.00 | 0.00 | 3.95 |
1846 | 2169 | 0.595567 | AAGCGCTTGACACGAACGTA | 60.596 | 50.000 | 24.40 | 0.00 | 0.00 | 3.57 |
1858 | 2181 | 0.030235 | CGAACGTATCCGAGGATGCA | 59.970 | 55.000 | 17.94 | 0.00 | 37.12 | 3.96 |
1864 | 2187 | 2.872245 | CGTATCCGAGGATGCAATTGTT | 59.128 | 45.455 | 17.94 | 0.00 | 37.12 | 2.83 |
1865 | 2188 | 3.303329 | CGTATCCGAGGATGCAATTGTTG | 60.303 | 47.826 | 17.94 | 0.00 | 37.12 | 3.33 |
1903 | 2226 | 4.592192 | CCCGGCATGATCGTCGCT | 62.592 | 66.667 | 0.00 | 0.00 | 31.09 | 4.93 |
1915 | 2238 | 2.034879 | CGTCGCTGGCATTGAGGTT | 61.035 | 57.895 | 0.00 | 0.00 | 0.00 | 3.50 |
1960 | 2283 | 9.107177 | CAGAGGATGGTGAGAAATATATAATGC | 57.893 | 37.037 | 0.00 | 0.00 | 0.00 | 3.56 |
1961 | 2284 | 7.984050 | AGAGGATGGTGAGAAATATATAATGCG | 59.016 | 37.037 | 0.00 | 0.00 | 0.00 | 4.73 |
1964 | 2287 | 8.730680 | GGATGGTGAGAAATATATAATGCGTTT | 58.269 | 33.333 | 0.00 | 0.00 | 0.00 | 3.60 |
1965 | 2288 | 9.760660 | GATGGTGAGAAATATATAATGCGTTTC | 57.239 | 33.333 | 0.00 | 0.00 | 0.00 | 2.78 |
1987 | 2310 | 3.319137 | TCACAGGAGTTCTTGGAATCG | 57.681 | 47.619 | 0.00 | 0.00 | 0.00 | 3.34 |
1988 | 2311 | 2.897326 | TCACAGGAGTTCTTGGAATCGA | 59.103 | 45.455 | 0.00 | 0.00 | 0.00 | 3.59 |
2015 | 2339 | 0.599204 | TCTCTCACCGCGTTTTGGTC | 60.599 | 55.000 | 4.92 | 0.00 | 37.72 | 4.02 |
2033 | 2357 | 2.420129 | GGTCTGTCTTGTCTTGTGGTGT | 60.420 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
2034 | 2358 | 3.270877 | GTCTGTCTTGTCTTGTGGTGTT | 58.729 | 45.455 | 0.00 | 0.00 | 0.00 | 3.32 |
2099 | 2423 | 4.254709 | AGCGCACCTGGCACTCAA | 62.255 | 61.111 | 11.47 | 0.00 | 45.17 | 3.02 |
2128 | 2452 | 2.181021 | GTCCGAACGGCATCGACT | 59.819 | 61.111 | 8.48 | 0.00 | 45.48 | 4.18 |
2202 | 2526 | 1.228657 | GGAGGTGACACCAAAGCGTC | 61.229 | 60.000 | 26.30 | 13.35 | 41.95 | 5.19 |
2218 | 2542 | 1.875963 | GTCCGCTGGTGTTTGATGG | 59.124 | 57.895 | 0.00 | 0.00 | 0.00 | 3.51 |
2238 | 2562 | 2.610727 | GGAACAGAGGAGACTTTGGACG | 60.611 | 54.545 | 0.00 | 0.00 | 46.41 | 4.79 |
2279 | 2603 | 7.064728 | GTCATCTGTCTACTTGTGTTTAATCCC | 59.935 | 40.741 | 0.00 | 0.00 | 0.00 | 3.85 |
2281 | 2605 | 5.546499 | TCTGTCTACTTGTGTTTAATCCCCT | 59.454 | 40.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2294 | 2618 | 7.610305 | GTGTTTAATCCCCTTGTTCATCTCTAA | 59.390 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
2297 | 2621 | 9.847224 | TTTAATCCCCTTGTTCATCTCTAATAC | 57.153 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
2300 | 2624 | 7.598759 | TCCCCTTGTTCATCTCTAATACTAC | 57.401 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2301 | 2625 | 7.363031 | TCCCCTTGTTCATCTCTAATACTACT | 58.637 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
2304 | 2628 | 9.357161 | CCCTTGTTCATCTCTAATACTACTAGT | 57.643 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
2314 | 2638 | 6.757237 | TCTAATACTACTAGTAGCAGCGTCT | 58.243 | 40.000 | 26.54 | 10.35 | 33.66 | 4.18 |
2319 | 2643 | 3.219052 | ACTAGTAGCAGCGTCTTGTTC | 57.781 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
2333 | 2657 | 1.305219 | TTGTTCATAGCACTGCCGCC | 61.305 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
2336 | 2660 | 3.566853 | CATAGCACTGCCGCCGTG | 61.567 | 66.667 | 10.34 | 10.34 | 35.53 | 4.94 |
2352 | 2676 | 3.948719 | TGTGCCCTTCCCCGTGAC | 61.949 | 66.667 | 0.00 | 0.00 | 0.00 | 3.67 |
2371 | 2695 | 0.533755 | CGGCAACTCCATGGATCCTC | 60.534 | 60.000 | 16.63 | 5.32 | 34.01 | 3.71 |
2434 | 2764 | 1.514014 | GCGCGCGTTGAATTTCCAT | 60.514 | 52.632 | 32.35 | 0.00 | 0.00 | 3.41 |
2441 | 2771 | 4.663889 | GCGCGTTGAATTTCCATTTCTTTG | 60.664 | 41.667 | 8.43 | 0.00 | 0.00 | 2.77 |
2445 | 2775 | 6.128729 | CGTTGAATTTCCATTTCTTTGTTGC | 58.871 | 36.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2465 | 2795 | 2.659291 | GCTGTATGCGCACGCTATTTAC | 60.659 | 50.000 | 14.90 | 10.42 | 42.51 | 2.01 |
2466 | 2796 | 2.794910 | CTGTATGCGCACGCTATTTACT | 59.205 | 45.455 | 14.90 | 0.00 | 42.51 | 2.24 |
2467 | 2797 | 2.792674 | TGTATGCGCACGCTATTTACTC | 59.207 | 45.455 | 14.90 | 0.00 | 42.51 | 2.59 |
2468 | 2798 | 1.217882 | ATGCGCACGCTATTTACTCC | 58.782 | 50.000 | 14.90 | 0.00 | 42.51 | 3.85 |
2469 | 2799 | 0.108567 | TGCGCACGCTATTTACTCCA | 60.109 | 50.000 | 16.77 | 0.00 | 42.51 | 3.86 |
2470 | 2800 | 1.217882 | GCGCACGCTATTTACTCCAT | 58.782 | 50.000 | 7.96 | 0.00 | 38.26 | 3.41 |
2471 | 2801 | 1.070577 | GCGCACGCTATTTACTCCATG | 60.071 | 52.381 | 7.96 | 0.00 | 38.26 | 3.66 |
2472 | 2802 | 1.526887 | CGCACGCTATTTACTCCATGG | 59.473 | 52.381 | 4.97 | 4.97 | 0.00 | 3.66 |
2473 | 2803 | 2.801699 | CGCACGCTATTTACTCCATGGA | 60.802 | 50.000 | 15.27 | 15.27 | 0.00 | 3.41 |
2474 | 2804 | 3.403038 | GCACGCTATTTACTCCATGGAT | 58.597 | 45.455 | 16.63 | 8.36 | 0.00 | 3.41 |
2475 | 2805 | 4.566004 | GCACGCTATTTACTCCATGGATA | 58.434 | 43.478 | 16.63 | 7.32 | 0.00 | 2.59 |
2476 | 2806 | 4.994852 | GCACGCTATTTACTCCATGGATAA | 59.005 | 41.667 | 16.63 | 12.88 | 0.00 | 1.75 |
2477 | 2807 | 5.468746 | GCACGCTATTTACTCCATGGATAAA | 59.531 | 40.000 | 16.63 | 19.87 | 0.00 | 1.40 |
2478 | 2808 | 6.347725 | GCACGCTATTTACTCCATGGATAAAG | 60.348 | 42.308 | 16.63 | 5.99 | 0.00 | 1.85 |
2479 | 2809 | 5.701290 | ACGCTATTTACTCCATGGATAAAGC | 59.299 | 40.000 | 16.63 | 18.15 | 0.00 | 3.51 |
2480 | 2810 | 5.122396 | CGCTATTTACTCCATGGATAAAGCC | 59.878 | 44.000 | 16.63 | 12.02 | 0.00 | 4.35 |
2481 | 2811 | 6.241645 | GCTATTTACTCCATGGATAAAGCCT | 58.758 | 40.000 | 16.63 | 9.75 | 0.00 | 4.58 |
2482 | 2812 | 6.372937 | GCTATTTACTCCATGGATAAAGCCTC | 59.627 | 42.308 | 16.63 | 9.06 | 0.00 | 4.70 |
2483 | 2813 | 4.706842 | TTACTCCATGGATAAAGCCTCC | 57.293 | 45.455 | 16.63 | 0.00 | 0.00 | 4.30 |
2484 | 2814 | 1.417890 | ACTCCATGGATAAAGCCTCCG | 59.582 | 52.381 | 16.63 | 1.50 | 35.41 | 4.63 |
2485 | 2815 | 1.694150 | CTCCATGGATAAAGCCTCCGA | 59.306 | 52.381 | 16.63 | 0.00 | 35.41 | 4.55 |
2486 | 2816 | 1.416401 | TCCATGGATAAAGCCTCCGAC | 59.584 | 52.381 | 11.44 | 0.00 | 35.41 | 4.79 |
2487 | 2817 | 1.140852 | CCATGGATAAAGCCTCCGACA | 59.859 | 52.381 | 5.56 | 0.00 | 35.41 | 4.35 |
2488 | 2818 | 2.421388 | CCATGGATAAAGCCTCCGACAA | 60.421 | 50.000 | 5.56 | 0.00 | 35.41 | 3.18 |
2489 | 2819 | 2.691409 | TGGATAAAGCCTCCGACAAG | 57.309 | 50.000 | 0.00 | 0.00 | 35.41 | 3.16 |
2490 | 2820 | 1.300481 | GGATAAAGCCTCCGACAAGC | 58.700 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
2491 | 2821 | 0.931005 | GATAAAGCCTCCGACAAGCG | 59.069 | 55.000 | 0.00 | 0.00 | 40.47 | 4.68 |
2502 | 2832 | 2.279582 | CGACAAGCGGTAGTTGATCT | 57.720 | 50.000 | 0.00 | 0.00 | 36.03 | 2.75 |
2503 | 2833 | 2.607187 | CGACAAGCGGTAGTTGATCTT | 58.393 | 47.619 | 0.00 | 0.00 | 36.03 | 2.40 |
2504 | 2834 | 2.345641 | CGACAAGCGGTAGTTGATCTTG | 59.654 | 50.000 | 0.00 | 0.00 | 39.79 | 3.02 |
2505 | 2835 | 2.076863 | ACAAGCGGTAGTTGATCTTGC | 58.923 | 47.619 | 0.00 | 0.00 | 38.06 | 4.01 |
2506 | 2836 | 1.061131 | CAAGCGGTAGTTGATCTTGCG | 59.939 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
2507 | 2837 | 1.084370 | AGCGGTAGTTGATCTTGCGC | 61.084 | 55.000 | 0.00 | 0.00 | 0.00 | 6.09 |
2508 | 2838 | 1.358725 | GCGGTAGTTGATCTTGCGCA | 61.359 | 55.000 | 5.66 | 5.66 | 0.00 | 6.09 |
2509 | 2839 | 1.075542 | CGGTAGTTGATCTTGCGCAA | 58.924 | 50.000 | 23.48 | 23.48 | 0.00 | 4.85 |
2510 | 2840 | 1.201921 | CGGTAGTTGATCTTGCGCAAC | 60.202 | 52.381 | 21.02 | 10.74 | 43.48 | 4.17 |
2511 | 2841 | 1.201921 | GGTAGTTGATCTTGCGCAACG | 60.202 | 52.381 | 21.02 | 15.44 | 46.65 | 4.10 |
2687 | 3021 | 4.039852 | AGTTTGAACAGAAGAGTCCTCTCC | 59.960 | 45.833 | 0.00 | 0.00 | 41.26 | 3.71 |
3016 | 3352 | 8.877864 | AAATCAACCTCAATATGTTTAGTCCA | 57.122 | 30.769 | 0.00 | 0.00 | 0.00 | 4.02 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
5 | 6 | 8.730680 | GGCAGTAAATACAGAGAAAGAAATGAA | 58.269 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
6 | 7 | 7.882791 | TGGCAGTAAATACAGAGAAAGAAATGA | 59.117 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
7 | 8 | 8.044060 | TGGCAGTAAATACAGAGAAAGAAATG | 57.956 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
8 | 9 | 8.814038 | ATGGCAGTAAATACAGAGAAAGAAAT | 57.186 | 30.769 | 0.00 | 0.00 | 0.00 | 2.17 |
9 | 10 | 8.635765 | AATGGCAGTAAATACAGAGAAAGAAA | 57.364 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
10 | 11 | 8.635765 | AAATGGCAGTAAATACAGAGAAAGAA | 57.364 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
11 | 12 | 8.635765 | AAAATGGCAGTAAATACAGAGAAAGA | 57.364 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
12 | 13 | 9.132521 | CAAAAATGGCAGTAAATACAGAGAAAG | 57.867 | 33.333 | 0.00 | 0.00 | 0.00 | 2.62 |
13 | 14 | 8.637986 | ACAAAAATGGCAGTAAATACAGAGAAA | 58.362 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
14 | 15 | 8.177119 | ACAAAAATGGCAGTAAATACAGAGAA | 57.823 | 30.769 | 0.00 | 0.00 | 0.00 | 2.87 |
15 | 16 | 7.759489 | ACAAAAATGGCAGTAAATACAGAGA | 57.241 | 32.000 | 0.00 | 0.00 | 0.00 | 3.10 |
16 | 17 | 8.816640 | AAACAAAAATGGCAGTAAATACAGAG | 57.183 | 30.769 | 0.00 | 0.00 | 0.00 | 3.35 |
17 | 18 | 8.637986 | AGAAACAAAAATGGCAGTAAATACAGA | 58.362 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
18 | 19 | 8.816640 | AGAAACAAAAATGGCAGTAAATACAG | 57.183 | 30.769 | 0.00 | 0.00 | 0.00 | 2.74 |
19 | 20 | 9.606631 | AAAGAAACAAAAATGGCAGTAAATACA | 57.393 | 25.926 | 0.00 | 0.00 | 0.00 | 2.29 |
21 | 22 | 9.267084 | GGAAAGAAACAAAAATGGCAGTAAATA | 57.733 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
22 | 23 | 7.992608 | AGGAAAGAAACAAAAATGGCAGTAAAT | 59.007 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
23 | 24 | 7.334858 | AGGAAAGAAACAAAAATGGCAGTAAA | 58.665 | 30.769 | 0.00 | 0.00 | 0.00 | 2.01 |
24 | 25 | 6.883744 | AGGAAAGAAACAAAAATGGCAGTAA | 58.116 | 32.000 | 0.00 | 0.00 | 0.00 | 2.24 |
25 | 26 | 6.478512 | AGGAAAGAAACAAAAATGGCAGTA | 57.521 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
26 | 27 | 5.357742 | AGGAAAGAAACAAAAATGGCAGT | 57.642 | 34.783 | 0.00 | 0.00 | 0.00 | 4.40 |
27 | 28 | 6.682423 | AAAGGAAAGAAACAAAAATGGCAG | 57.318 | 33.333 | 0.00 | 0.00 | 0.00 | 4.85 |
28 | 29 | 6.094742 | GGAAAAGGAAAGAAACAAAAATGGCA | 59.905 | 34.615 | 0.00 | 0.00 | 0.00 | 4.92 |
29 | 30 | 6.318648 | AGGAAAAGGAAAGAAACAAAAATGGC | 59.681 | 34.615 | 0.00 | 0.00 | 0.00 | 4.40 |
30 | 31 | 7.552330 | TGAGGAAAAGGAAAGAAACAAAAATGG | 59.448 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
31 | 32 | 8.491331 | TGAGGAAAAGGAAAGAAACAAAAATG | 57.509 | 30.769 | 0.00 | 0.00 | 0.00 | 2.32 |
32 | 33 | 9.685276 | AATGAGGAAAAGGAAAGAAACAAAAAT | 57.315 | 25.926 | 0.00 | 0.00 | 0.00 | 1.82 |
33 | 34 | 9.513906 | AAATGAGGAAAAGGAAAGAAACAAAAA | 57.486 | 25.926 | 0.00 | 0.00 | 0.00 | 1.94 |
34 | 35 | 9.513906 | AAAATGAGGAAAAGGAAAGAAACAAAA | 57.486 | 25.926 | 0.00 | 0.00 | 0.00 | 2.44 |
65 | 66 | 0.395724 | AGATCAACGGATTTGGCCCC | 60.396 | 55.000 | 0.00 | 0.00 | 35.69 | 5.80 |
74 | 75 | 4.081365 | TGGCAGTAAATACAGATCAACGGA | 60.081 | 41.667 | 0.00 | 0.00 | 0.00 | 4.69 |
75 | 76 | 4.034048 | GTGGCAGTAAATACAGATCAACGG | 59.966 | 45.833 | 0.00 | 0.00 | 0.00 | 4.44 |
78 | 79 | 5.185454 | CAGGTGGCAGTAAATACAGATCAA | 58.815 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
79 | 80 | 4.225042 | ACAGGTGGCAGTAAATACAGATCA | 59.775 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
92 | 93 | 1.271001 | TGAGTTCATGACAGGTGGCAG | 60.271 | 52.381 | 0.00 | 0.00 | 35.91 | 4.85 |
97 | 98 | 5.290493 | TGTTAAGTGAGTTCATGACAGGT | 57.710 | 39.130 | 0.00 | 0.00 | 0.00 | 4.00 |
98 | 99 | 4.692625 | CCTGTTAAGTGAGTTCATGACAGG | 59.307 | 45.833 | 10.45 | 10.45 | 35.68 | 4.00 |
106 | 108 | 2.861147 | AGGCCCTGTTAAGTGAGTTC | 57.139 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
122 | 124 | 0.946221 | CACTGATCGGCGGATTAGGC | 60.946 | 60.000 | 23.92 | 7.22 | 39.82 | 3.93 |
123 | 125 | 0.319900 | CCACTGATCGGCGGATTAGG | 60.320 | 60.000 | 23.92 | 15.14 | 39.82 | 2.69 |
125 | 127 | 0.828022 | AACCACTGATCGGCGGATTA | 59.172 | 50.000 | 15.67 | 3.36 | 31.51 | 1.75 |
149 | 151 | 4.713553 | TCTGCAGAAAACACCACATCTTA | 58.286 | 39.130 | 15.67 | 0.00 | 0.00 | 2.10 |
199 | 213 | 4.520492 | ACACCACTTTGAAGGCTAGATTTG | 59.480 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
203 | 217 | 3.857157 | AACACCACTTTGAAGGCTAGA | 57.143 | 42.857 | 0.00 | 0.00 | 0.00 | 2.43 |
208 | 222 | 4.329801 | GCAAAAGAAACACCACTTTGAAGG | 59.670 | 41.667 | 0.00 | 0.00 | 36.62 | 3.46 |
225 | 239 | 8.872845 | GTGGAATTATGGAGTAAATTGCAAAAG | 58.127 | 33.333 | 1.71 | 0.00 | 42.54 | 2.27 |
265 | 282 | 1.612950 | GTGGGATGTGTGCATGTTGAA | 59.387 | 47.619 | 0.00 | 0.00 | 35.07 | 2.69 |
278 | 295 | 2.854963 | CATGTATGGTGAGGTGGGATG | 58.145 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
293 | 310 | 4.398988 | GTGAATTTGATGAGGTGGCATGTA | 59.601 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
378 | 480 | 7.215789 | TGCGGGAATTGATTGCATTATATTTT | 58.784 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
383 | 485 | 3.553508 | GCTGCGGGAATTGATTGCATTAT | 60.554 | 43.478 | 0.00 | 0.00 | 34.66 | 1.28 |
384 | 486 | 2.223782 | GCTGCGGGAATTGATTGCATTA | 60.224 | 45.455 | 0.00 | 0.00 | 34.66 | 1.90 |
385 | 487 | 1.472026 | GCTGCGGGAATTGATTGCATT | 60.472 | 47.619 | 0.00 | 0.00 | 34.66 | 3.56 |
386 | 488 | 0.103572 | GCTGCGGGAATTGATTGCAT | 59.896 | 50.000 | 0.00 | 0.00 | 34.66 | 3.96 |
387 | 489 | 1.249469 | TGCTGCGGGAATTGATTGCA | 61.249 | 50.000 | 0.00 | 0.00 | 0.00 | 4.08 |
388 | 490 | 0.803380 | GTGCTGCGGGAATTGATTGC | 60.803 | 55.000 | 0.00 | 0.00 | 0.00 | 3.56 |
389 | 491 | 0.527113 | TGTGCTGCGGGAATTGATTG | 59.473 | 50.000 | 0.00 | 0.00 | 0.00 | 2.67 |
390 | 492 | 1.255882 | TTGTGCTGCGGGAATTGATT | 58.744 | 45.000 | 0.00 | 0.00 | 0.00 | 2.57 |
391 | 493 | 1.255882 | TTTGTGCTGCGGGAATTGAT | 58.744 | 45.000 | 0.00 | 0.00 | 0.00 | 2.57 |
392 | 494 | 1.035923 | TTTTGTGCTGCGGGAATTGA | 58.964 | 45.000 | 0.00 | 0.00 | 0.00 | 2.57 |
393 | 495 | 2.083167 | ATTTTGTGCTGCGGGAATTG | 57.917 | 45.000 | 0.00 | 0.00 | 0.00 | 2.32 |
394 | 496 | 3.951775 | TTATTTTGTGCTGCGGGAATT | 57.048 | 38.095 | 0.00 | 0.00 | 0.00 | 2.17 |
395 | 497 | 5.590530 | TTATTATTTTGTGCTGCGGGAAT | 57.409 | 34.783 | 0.00 | 0.00 | 0.00 | 3.01 |
396 | 498 | 5.347342 | CATTATTATTTTGTGCTGCGGGAA | 58.653 | 37.500 | 0.00 | 0.00 | 0.00 | 3.97 |
397 | 499 | 4.736168 | GCATTATTATTTTGTGCTGCGGGA | 60.736 | 41.667 | 0.00 | 0.00 | 33.25 | 5.14 |
398 | 500 | 3.490526 | GCATTATTATTTTGTGCTGCGGG | 59.509 | 43.478 | 0.00 | 0.00 | 33.25 | 6.13 |
399 | 501 | 4.111198 | TGCATTATTATTTTGTGCTGCGG | 58.889 | 39.130 | 0.00 | 0.00 | 36.78 | 5.69 |
400 | 502 | 5.699438 | TTGCATTATTATTTTGTGCTGCG | 57.301 | 34.783 | 0.00 | 0.00 | 36.78 | 5.18 |
401 | 503 | 7.236674 | TGATTGCATTATTATTTTGTGCTGC | 57.763 | 32.000 | 0.00 | 0.00 | 36.78 | 5.25 |
404 | 506 | 9.654417 | GGAATTGATTGCATTATTATTTTGTGC | 57.346 | 29.630 | 0.00 | 0.00 | 36.39 | 4.57 |
406 | 508 | 9.044150 | CGGGAATTGATTGCATTATTATTTTGT | 57.956 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
407 | 509 | 8.011106 | GCGGGAATTGATTGCATTATTATTTTG | 58.989 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
408 | 510 | 7.714377 | TGCGGGAATTGATTGCATTATTATTTT | 59.286 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
409 | 511 | 7.215789 | TGCGGGAATTGATTGCATTATTATTT | 58.784 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
410 | 512 | 6.757237 | TGCGGGAATTGATTGCATTATTATT | 58.243 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
411 | 513 | 6.343716 | TGCGGGAATTGATTGCATTATTAT | 57.656 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
412 | 514 | 5.771469 | CTGCGGGAATTGATTGCATTATTA | 58.229 | 37.500 | 0.00 | 0.00 | 34.66 | 0.98 |
413 | 515 | 4.624015 | CTGCGGGAATTGATTGCATTATT | 58.376 | 39.130 | 0.00 | 0.00 | 34.66 | 1.40 |
440 | 542 | 4.771054 | GGAATACTAGATGATACCCCACGT | 59.229 | 45.833 | 0.00 | 0.00 | 0.00 | 4.49 |
471 | 573 | 1.290009 | GCGCCACTTTTCAATGCCT | 59.710 | 52.632 | 0.00 | 0.00 | 0.00 | 4.75 |
473 | 575 | 0.939106 | AACGCGCCACTTTTCAATGC | 60.939 | 50.000 | 5.73 | 0.00 | 0.00 | 3.56 |
474 | 576 | 2.323939 | TAACGCGCCACTTTTCAATG | 57.676 | 45.000 | 5.73 | 0.00 | 0.00 | 2.82 |
475 | 577 | 4.893424 | ATATAACGCGCCACTTTTCAAT | 57.107 | 36.364 | 5.73 | 0.00 | 0.00 | 2.57 |
476 | 578 | 4.407818 | CAATATAACGCGCCACTTTTCAA | 58.592 | 39.130 | 5.73 | 0.00 | 0.00 | 2.69 |
479 | 581 | 2.478879 | GCCAATATAACGCGCCACTTTT | 60.479 | 45.455 | 5.73 | 0.00 | 0.00 | 2.27 |
487 | 589 | 3.684103 | TTCCTTTGCCAATATAACGCG | 57.316 | 42.857 | 3.53 | 3.53 | 0.00 | 6.01 |
520 | 816 | 5.809719 | TTGCCAAACATTGTTTTCCTTTC | 57.190 | 34.783 | 12.02 | 0.15 | 0.00 | 2.62 |
565 | 861 | 1.241315 | AATAACACACCACTGCCGCC | 61.241 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
567 | 863 | 2.606795 | CCAAAATAACACACCACTGCCG | 60.607 | 50.000 | 0.00 | 0.00 | 0.00 | 5.69 |
575 | 871 | 6.670077 | TTTTCCTTTGCCAAAATAACACAC | 57.330 | 33.333 | 0.00 | 0.00 | 0.00 | 3.82 |
599 | 895 | 9.522804 | ACGTTTGCTTCATAAGAAAAACATTTA | 57.477 | 25.926 | 13.85 | 0.00 | 37.76 | 1.40 |
605 | 901 | 6.137794 | TCCACGTTTGCTTCATAAGAAAAA | 57.862 | 33.333 | 0.00 | 0.00 | 37.76 | 1.94 |
632 | 928 | 9.860898 | GAGGATTTTGACAAAATAACATAGCTT | 57.139 | 29.630 | 22.85 | 8.01 | 40.97 | 3.74 |
668 | 964 | 4.395231 | ACTTAGCCAAATAGCCGTTTTCTC | 59.605 | 41.667 | 0.00 | 0.00 | 0.00 | 2.87 |
702 | 998 | 5.523438 | TTCCTTCACCAAAATAACACACC | 57.477 | 39.130 | 0.00 | 0.00 | 0.00 | 4.16 |
712 | 1008 | 6.105333 | CACACATTTCTTTTCCTTCACCAAA | 58.895 | 36.000 | 0.00 | 0.00 | 0.00 | 3.28 |
802 | 1110 | 7.600375 | CGCATACTGGATTGACACTATAATCTT | 59.400 | 37.037 | 0.00 | 0.00 | 34.52 | 2.40 |
824 | 1132 | 3.324993 | CACCTTTGCCAAAATAACGCAT | 58.675 | 40.909 | 0.00 | 0.00 | 31.44 | 4.73 |
864 | 1172 | 0.670162 | GTTTCTCTGCCTTTGCTGCA | 59.330 | 50.000 | 0.00 | 0.00 | 38.71 | 4.41 |
868 | 1176 | 1.081175 | GCCGTTTCTCTGCCTTTGC | 60.081 | 57.895 | 0.00 | 0.00 | 38.26 | 3.68 |
889 | 1197 | 5.992217 | GCCGTCAGATATTGAGGTATTTTCT | 59.008 | 40.000 | 6.76 | 0.00 | 39.49 | 2.52 |
896 | 1204 | 1.202417 | CGTGCCGTCAGATATTGAGGT | 60.202 | 52.381 | 6.76 | 0.00 | 39.49 | 3.85 |
918 | 1226 | 1.807139 | TGGATCGTGTCATTGTGTGG | 58.193 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
932 | 1240 | 4.407296 | GGAGGGGACAGATATGTATGGATC | 59.593 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
945 | 1253 | 0.323908 | AGAAGACGAGGAGGGGACAG | 60.324 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
949 | 1257 | 3.975168 | TTTAAAGAAGACGAGGAGGGG | 57.025 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
1010 | 1318 | 2.111582 | GCTGGCTTGTGCTAGGAGC | 61.112 | 63.158 | 3.77 | 0.00 | 46.16 | 4.70 |
1084 | 1401 | 4.049640 | GCCGGAATGCAAACGCCA | 62.050 | 61.111 | 5.05 | 0.00 | 0.00 | 5.69 |
1170 | 1487 | 0.980423 | GAGATCATAGGGAGGGGTGC | 59.020 | 60.000 | 0.00 | 0.00 | 0.00 | 5.01 |
1222 | 1539 | 2.362503 | ATCTCACGGGAGGCGACA | 60.363 | 61.111 | 16.20 | 0.00 | 41.69 | 4.35 |
1234 | 1551 | 2.047002 | TGTACCGTCGGATCATCTCA | 57.953 | 50.000 | 20.51 | 3.29 | 0.00 | 3.27 |
1273 | 1590 | 2.829741 | TGATGACATCGGTGTTGACA | 57.170 | 45.000 | 1.13 | 0.00 | 39.09 | 3.58 |
1315 | 1632 | 2.675423 | TCGTAGGCGCAGGACAGT | 60.675 | 61.111 | 10.83 | 0.00 | 38.14 | 3.55 |
1351 | 1668 | 3.274095 | TGGATGATGGCGATGTTAACA | 57.726 | 42.857 | 11.41 | 11.41 | 0.00 | 2.41 |
1354 | 1671 | 2.209273 | CGTTGGATGATGGCGATGTTA | 58.791 | 47.619 | 0.00 | 0.00 | 0.00 | 2.41 |
1356 | 1673 | 0.815213 | CCGTTGGATGATGGCGATGT | 60.815 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1372 | 1689 | 3.633116 | CCAGGGGAAACGGACCGT | 61.633 | 66.667 | 15.37 | 15.37 | 43.97 | 4.83 |
1462 | 1779 | 3.666111 | CGTCGTACTCGATGTTGAGTTCA | 60.666 | 47.826 | 8.14 | 0.00 | 46.85 | 3.18 |
1516 | 1833 | 2.343758 | GTGGAGGTGAAGAGCGCA | 59.656 | 61.111 | 11.47 | 0.00 | 0.00 | 6.09 |
1598 | 1915 | 1.266718 | GCGATGCTCTTTGACAACCAA | 59.733 | 47.619 | 0.00 | 0.00 | 0.00 | 3.67 |
1601 | 1918 | 0.512952 | ACGCGATGCTCTTTGACAAC | 59.487 | 50.000 | 15.93 | 0.00 | 0.00 | 3.32 |
1603 | 1920 | 0.319469 | TGACGCGATGCTCTTTGACA | 60.319 | 50.000 | 15.93 | 0.00 | 0.00 | 3.58 |
1627 | 1944 | 2.194597 | GCCCAGTTGGTGACCACA | 59.805 | 61.111 | 2.46 | 0.00 | 36.04 | 4.17 |
1678 | 2001 | 1.266718 | GCGTCCATGTGTGATTGTGTT | 59.733 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
1679 | 2002 | 0.874390 | GCGTCCATGTGTGATTGTGT | 59.126 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
1723 | 2046 | 0.391661 | CGTGGCCACATGAGCTTACT | 60.392 | 55.000 | 34.16 | 0.00 | 35.58 | 2.24 |
1750 | 2073 | 1.247567 | CCTTTCCGTTGGCACTGAAT | 58.752 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1765 | 2088 | 0.602905 | CGAGCCGTTTGACTCCCTTT | 60.603 | 55.000 | 0.00 | 0.00 | 0.00 | 3.11 |
1814 | 2137 | 3.089784 | CGCTTCCATTCCGGTTCG | 58.910 | 61.111 | 0.00 | 0.00 | 35.57 | 3.95 |
1818 | 2141 | 1.745115 | TCAAGCGCTTCCATTCCGG | 60.745 | 57.895 | 22.21 | 6.60 | 0.00 | 5.14 |
1819 | 2142 | 1.298157 | TGTCAAGCGCTTCCATTCCG | 61.298 | 55.000 | 22.21 | 7.42 | 0.00 | 4.30 |
1820 | 2143 | 0.169009 | GTGTCAAGCGCTTCCATTCC | 59.831 | 55.000 | 22.21 | 4.80 | 0.00 | 3.01 |
1821 | 2144 | 0.179215 | CGTGTCAAGCGCTTCCATTC | 60.179 | 55.000 | 22.21 | 9.39 | 0.00 | 2.67 |
1822 | 2145 | 0.602638 | TCGTGTCAAGCGCTTCCATT | 60.603 | 50.000 | 22.21 | 0.00 | 0.00 | 3.16 |
1823 | 2146 | 0.602638 | TTCGTGTCAAGCGCTTCCAT | 60.603 | 50.000 | 22.21 | 0.00 | 0.00 | 3.41 |
1828 | 2151 | 0.388134 | ATACGTTCGTGTCAAGCGCT | 60.388 | 50.000 | 2.64 | 2.64 | 0.00 | 5.92 |
1844 | 2167 | 3.003689 | CCAACAATTGCATCCTCGGATAC | 59.996 | 47.826 | 5.05 | 0.00 | 32.93 | 2.24 |
1846 | 2169 | 2.026641 | CCAACAATTGCATCCTCGGAT | 58.973 | 47.619 | 5.05 | 0.00 | 34.81 | 4.18 |
1858 | 2181 | 0.242555 | CGCGGGTTAAGCCAACAATT | 59.757 | 50.000 | 22.89 | 0.00 | 39.04 | 2.32 |
1955 | 2278 | 4.002906 | ACTCCTGTGAAGAAACGCATTA | 57.997 | 40.909 | 0.00 | 0.00 | 0.00 | 1.90 |
1956 | 2279 | 2.851195 | ACTCCTGTGAAGAAACGCATT | 58.149 | 42.857 | 0.00 | 0.00 | 0.00 | 3.56 |
1957 | 2280 | 2.550830 | ACTCCTGTGAAGAAACGCAT | 57.449 | 45.000 | 0.00 | 0.00 | 0.00 | 4.73 |
1958 | 2281 | 2.158957 | AGAACTCCTGTGAAGAAACGCA | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 5.24 |
1960 | 2283 | 3.248602 | CCAAGAACTCCTGTGAAGAAACG | 59.751 | 47.826 | 0.00 | 0.00 | 0.00 | 3.60 |
1961 | 2284 | 4.451900 | TCCAAGAACTCCTGTGAAGAAAC | 58.548 | 43.478 | 0.00 | 0.00 | 0.00 | 2.78 |
1964 | 2287 | 4.561530 | CGATTCCAAGAACTCCTGTGAAGA | 60.562 | 45.833 | 0.00 | 0.00 | 0.00 | 2.87 |
1965 | 2288 | 3.681897 | CGATTCCAAGAACTCCTGTGAAG | 59.318 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
1987 | 2310 | 2.123342 | CGCGGTGAGAGAAATGAGATC | 58.877 | 52.381 | 0.00 | 0.00 | 0.00 | 2.75 |
1988 | 2311 | 1.478510 | ACGCGGTGAGAGAAATGAGAT | 59.521 | 47.619 | 12.47 | 0.00 | 0.00 | 2.75 |
2015 | 2339 | 4.414852 | CAAAACACCACAAGACAAGACAG | 58.585 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
2033 | 2357 | 0.179124 | GAACGTTGGGCACTGCAAAA | 60.179 | 50.000 | 5.00 | 0.00 | 0.00 | 2.44 |
2034 | 2358 | 1.435515 | GAACGTTGGGCACTGCAAA | 59.564 | 52.632 | 5.00 | 0.00 | 0.00 | 3.68 |
2138 | 2462 | 2.997315 | CTGGTCCTCACGCTGGGA | 60.997 | 66.667 | 0.00 | 0.00 | 0.00 | 4.37 |
2166 | 2490 | 4.129737 | CGTCGTCCAGGCGTCCAT | 62.130 | 66.667 | 3.62 | 0.00 | 44.05 | 3.41 |
2202 | 2526 | 0.240945 | GTTCCATCAAACACCAGCGG | 59.759 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
2218 | 2542 | 2.296471 | TCGTCCAAAGTCTCCTCTGTTC | 59.704 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2294 | 2618 | 5.124645 | ACAAGACGCTGCTACTAGTAGTAT | 58.875 | 41.667 | 26.76 | 11.29 | 35.65 | 2.12 |
2297 | 2621 | 4.142665 | TGAACAAGACGCTGCTACTAGTAG | 60.143 | 45.833 | 23.25 | 23.25 | 36.29 | 2.57 |
2300 | 2624 | 3.217599 | TGAACAAGACGCTGCTACTAG | 57.782 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
2301 | 2625 | 3.868757 | ATGAACAAGACGCTGCTACTA | 57.131 | 42.857 | 0.00 | 0.00 | 0.00 | 1.82 |
2304 | 2628 | 2.094234 | TGCTATGAACAAGACGCTGCTA | 60.094 | 45.455 | 0.00 | 0.00 | 0.00 | 3.49 |
2307 | 2631 | 2.093310 | CAGTGCTATGAACAAGACGCTG | 59.907 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
2308 | 2632 | 2.341257 | CAGTGCTATGAACAAGACGCT | 58.659 | 47.619 | 0.00 | 0.00 | 0.00 | 5.07 |
2314 | 2638 | 1.305219 | GGCGGCAGTGCTATGAACAA | 61.305 | 55.000 | 16.11 | 0.00 | 34.52 | 2.83 |
2319 | 2643 | 3.566853 | CACGGCGGCAGTGCTATG | 61.567 | 66.667 | 19.63 | 6.63 | 32.52 | 2.23 |
2352 | 2676 | 0.533755 | GAGGATCCATGGAGTTGCCG | 60.534 | 60.000 | 21.33 | 0.00 | 40.66 | 5.69 |
2371 | 2695 | 7.452880 | TTTTATTCTGTCATCTTGTTCCAGG | 57.547 | 36.000 | 0.00 | 0.00 | 0.00 | 4.45 |
2434 | 2764 | 2.033927 | TGCGCATACAGCAACAAAGAAA | 59.966 | 40.909 | 5.66 | 0.00 | 46.13 | 2.52 |
2441 | 2771 | 1.692148 | TAGCGTGCGCATACAGCAAC | 61.692 | 55.000 | 15.91 | 0.00 | 46.97 | 4.17 |
2445 | 2775 | 2.794910 | AGTAAATAGCGTGCGCATACAG | 59.205 | 45.455 | 15.91 | 7.09 | 44.88 | 2.74 |
2465 | 2795 | 1.694150 | TCGGAGGCTTTATCCATGGAG | 59.306 | 52.381 | 21.33 | 7.50 | 36.57 | 3.86 |
2466 | 2796 | 1.416401 | GTCGGAGGCTTTATCCATGGA | 59.584 | 52.381 | 18.88 | 18.88 | 36.57 | 3.41 |
2467 | 2797 | 1.140852 | TGTCGGAGGCTTTATCCATGG | 59.859 | 52.381 | 4.97 | 4.97 | 36.57 | 3.66 |
2468 | 2798 | 2.620251 | TGTCGGAGGCTTTATCCATG | 57.380 | 50.000 | 0.00 | 0.00 | 36.57 | 3.66 |
2469 | 2799 | 2.746472 | GCTTGTCGGAGGCTTTATCCAT | 60.746 | 50.000 | 0.00 | 0.00 | 36.57 | 3.41 |
2470 | 2800 | 1.406887 | GCTTGTCGGAGGCTTTATCCA | 60.407 | 52.381 | 0.00 | 0.00 | 36.57 | 3.41 |
2471 | 2801 | 1.300481 | GCTTGTCGGAGGCTTTATCC | 58.700 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2472 | 2802 | 0.931005 | CGCTTGTCGGAGGCTTTATC | 59.069 | 55.000 | 0.00 | 0.00 | 33.78 | 1.75 |
2473 | 2803 | 3.065575 | CGCTTGTCGGAGGCTTTAT | 57.934 | 52.632 | 0.00 | 0.00 | 33.78 | 1.40 |
2474 | 2804 | 4.590487 | CGCTTGTCGGAGGCTTTA | 57.410 | 55.556 | 0.00 | 0.00 | 33.78 | 1.85 |
2483 | 2813 | 2.279582 | AGATCAACTACCGCTTGTCG | 57.720 | 50.000 | 0.00 | 0.00 | 38.08 | 4.35 |
2484 | 2814 | 2.094417 | GCAAGATCAACTACCGCTTGTC | 59.906 | 50.000 | 0.00 | 0.00 | 38.48 | 3.18 |
2485 | 2815 | 2.076863 | GCAAGATCAACTACCGCTTGT | 58.923 | 47.619 | 0.00 | 0.00 | 38.48 | 3.16 |
2486 | 2816 | 1.061131 | CGCAAGATCAACTACCGCTTG | 59.939 | 52.381 | 0.00 | 0.00 | 43.02 | 4.01 |
2487 | 2817 | 1.359848 | CGCAAGATCAACTACCGCTT | 58.640 | 50.000 | 0.00 | 0.00 | 43.02 | 4.68 |
2488 | 2818 | 1.084370 | GCGCAAGATCAACTACCGCT | 61.084 | 55.000 | 0.30 | 0.00 | 41.53 | 5.52 |
2489 | 2819 | 1.348594 | GCGCAAGATCAACTACCGC | 59.651 | 57.895 | 0.30 | 0.00 | 39.54 | 5.68 |
2490 | 2820 | 1.075542 | TTGCGCAAGATCAACTACCG | 58.924 | 50.000 | 21.02 | 0.00 | 43.02 | 4.02 |
2491 | 2821 | 1.201921 | CGTTGCGCAAGATCAACTACC | 60.202 | 52.381 | 25.78 | 6.53 | 40.12 | 3.18 |
2492 | 2822 | 2.145053 | CGTTGCGCAAGATCAACTAC | 57.855 | 50.000 | 25.78 | 8.15 | 40.12 | 2.73 |
2505 | 2835 | 4.026968 | CCCAATAATTTTACATGCGTTGCG | 60.027 | 41.667 | 0.00 | 0.00 | 0.00 | 4.85 |
2506 | 2836 | 5.105752 | TCCCAATAATTTTACATGCGTTGC | 58.894 | 37.500 | 0.00 | 0.00 | 0.00 | 4.17 |
2507 | 2837 | 6.237808 | GCTTCCCAATAATTTTACATGCGTTG | 60.238 | 38.462 | 0.00 | 0.00 | 0.00 | 4.10 |
2508 | 2838 | 5.810074 | GCTTCCCAATAATTTTACATGCGTT | 59.190 | 36.000 | 0.00 | 0.00 | 0.00 | 4.84 |
2509 | 2839 | 5.348164 | GCTTCCCAATAATTTTACATGCGT | 58.652 | 37.500 | 0.00 | 0.00 | 0.00 | 5.24 |
2510 | 2840 | 4.440758 | CGCTTCCCAATAATTTTACATGCG | 59.559 | 41.667 | 0.00 | 0.00 | 0.00 | 4.73 |
2511 | 2841 | 5.348164 | ACGCTTCCCAATAATTTTACATGC | 58.652 | 37.500 | 0.00 | 0.00 | 0.00 | 4.06 |
2512 | 2842 | 8.918961 | TTAACGCTTCCCAATAATTTTACATG | 57.081 | 30.769 | 0.00 | 0.00 | 0.00 | 3.21 |
2519 | 2849 | 5.020795 | AGGGTTTAACGCTTCCCAATAATT | 58.979 | 37.500 | 8.90 | 0.00 | 38.28 | 1.40 |
2552 | 2883 | 6.685527 | TTGCCAATATAAATACAAGTGCGA | 57.314 | 33.333 | 0.00 | 0.00 | 0.00 | 5.10 |
2669 | 3002 | 2.815158 | AGGGAGAGGACTCTTCTGTTC | 58.185 | 52.381 | 7.52 | 0.00 | 40.61 | 3.18 |
2951 | 3287 | 1.136224 | GTAGCTCGCAAACTGCTTGAC | 60.136 | 52.381 | 0.00 | 0.00 | 42.25 | 3.18 |
2980 | 3316 | 5.371115 | TGAGGTTGATTTCCATTTCGTTC | 57.629 | 39.130 | 0.00 | 0.00 | 0.00 | 3.95 |
3016 | 3352 | 2.362077 | GCTAATCCCGTTTTCCATGCAT | 59.638 | 45.455 | 0.00 | 0.00 | 0.00 | 3.96 |
3029 | 3365 | 4.200092 | CAACCTACCTTTCAGCTAATCCC | 58.800 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
3054 | 3390 | 6.863126 | GCAAGGTTATGGTGTGATAATATTGC | 59.137 | 38.462 | 0.00 | 0.00 | 36.28 | 3.56 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.