Multiple sequence alignment - TraesCS3B01G434500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G434500 chr3B 100.000 6992 0 0 1 6992 672864239 672871230 0.000000e+00 12912
1 TraesCS3B01G434500 chr3B 95.402 87 4 0 2632 2718 789764462 789764548 9.460000e-29 139
2 TraesCS3B01G434500 chr3D 95.305 4707 145 32 987 5645 511341759 511346437 0.000000e+00 7398
3 TraesCS3B01G434500 chr3D 93.928 1367 58 17 5642 6992 511346617 511347974 0.000000e+00 2041
4 TraesCS3B01G434500 chr3D 83.596 890 59 43 1 863 511340878 511341707 0.000000e+00 754
5 TraesCS3B01G434500 chr3A 95.514 2675 92 9 3505 6177 647476658 647479306 0.000000e+00 4250
6 TraesCS3B01G434500 chr3A 91.602 2596 124 36 98 2635 647473274 647475833 0.000000e+00 3500
7 TraesCS3B01G434500 chr3A 95.388 824 28 6 6174 6992 647479334 647480152 0.000000e+00 1303
8 TraesCS3B01G434500 chr3A 90.818 795 44 19 2717 3506 647475832 647476602 0.000000e+00 1037
9 TraesCS3B01G434500 chr5B 97.380 916 18 2 6082 6992 437803618 437802704 0.000000e+00 1554
10 TraesCS3B01G434500 chr5B 98.958 288 3 0 5793 6080 437806102 437805815 3.740000e-142 516
11 TraesCS3B01G434500 chr2A 80.992 363 34 11 4388 4732 630588749 630589094 9.000000e-64 255
12 TraesCS3B01G434500 chr1A 82.576 264 44 2 4843 5105 452863813 452864075 1.520000e-56 231
13 TraesCS3B01G434500 chr1A 93.548 93 5 1 2630 2721 580514741 580514833 3.400000e-28 137
14 TraesCS3B01G434500 chr1A 93.548 93 5 1 2630 2721 580542742 580542834 3.400000e-28 137
15 TraesCS3B01G434500 chr1A 90.426 94 7 2 3212 3304 452862630 452862722 9.520000e-24 122
16 TraesCS3B01G434500 chr1D 82.197 264 45 2 4843 5105 352415654 352415916 7.060000e-55 226
17 TraesCS3B01G434500 chr1D 90.426 94 7 2 3212 3304 352414478 352414570 9.520000e-24 122
18 TraesCS3B01G434500 chr1B 82.197 264 45 2 4843 5105 474685912 474686174 7.060000e-55 226
19 TraesCS3B01G434500 chr1B 97.468 79 2 0 3212 3290 474684680 474684758 1.220000e-27 135
20 TraesCS3B01G434500 chr6D 83.562 219 24 6 4408 4625 401168957 401168750 1.990000e-45 195
21 TraesCS3B01G434500 chr2D 97.674 86 2 0 2633 2718 119819450 119819535 1.570000e-31 148
22 TraesCS3B01G434500 chr7A 95.556 90 4 0 2629 2718 645281404 645281493 2.030000e-30 145
23 TraesCS3B01G434500 chr7D 96.471 85 3 0 2634 2718 602187240 602187324 2.630000e-29 141
24 TraesCS3B01G434500 chr7D 95.349 86 4 0 2633 2718 536134097 536134012 3.400000e-28 137
25 TraesCS3B01G434500 chrUn 93.617 94 2 2 2632 2721 99840395 99840302 3.400000e-28 137
26 TraesCS3B01G434500 chrUn 88.462 104 10 2 4628 4731 287944238 287944339 2.650000e-24 124
27 TraesCS3B01G434500 chrUn 88.462 104 10 2 4628 4731 287950307 287950408 2.650000e-24 124
28 TraesCS3B01G434500 chrUn 87.500 104 11 2 4628 4731 69456446 69456547 1.230000e-22 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G434500 chr3B 672864239 672871230 6991 False 12912.000000 12912 100.0000 1 6992 1 chr3B.!!$F1 6991
1 TraesCS3B01G434500 chr3D 511340878 511347974 7096 False 3397.666667 7398 90.9430 1 6992 3 chr3D.!!$F1 6991
2 TraesCS3B01G434500 chr3A 647473274 647480152 6878 False 2522.500000 4250 93.3305 98 6992 4 chr3A.!!$F1 6894
3 TraesCS3B01G434500 chr5B 437802704 437806102 3398 True 1035.000000 1554 98.1690 5793 6992 2 chr5B.!!$R1 1199

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
517 550 0.032540 GCCTGCTTTGACAAACCTGG 59.967 55.000 12.52 12.52 0.0 4.45 F
949 990 0.038159 CCTTCTGCTCCGTCGTTTCT 60.038 55.000 0.00 0.00 0.0 2.52 F
952 993 0.038526 TCTGCTCCGTCGTTTCTTCC 60.039 55.000 0.00 0.00 0.0 3.46 F
1397 1438 0.107945 ATCCTCTGCAGCTCGGTTTC 60.108 55.000 9.47 0.00 0.0 2.78 F
1856 1925 1.404391 GCATTCCAGCATCTCTTGTGG 59.596 52.381 0.00 0.00 0.0 4.17 F
2461 2535 1.946768 GCCAAAATACGCTCATAGGCA 59.053 47.619 0.00 0.00 40.5 4.75 F
3517 3668 0.255890 GCTGGCTTCCTAATGTCCCA 59.744 55.000 0.00 0.00 0.0 4.37 F
3518 3669 1.133668 GCTGGCTTCCTAATGTCCCAT 60.134 52.381 0.00 0.00 0.0 4.00 F
5363 5520 1.957668 TGCGATGGATGTCTGAATGG 58.042 50.000 0.00 0.00 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2513 2587 0.179045 AGCGTCCAAGCACTGAGTTT 60.179 50.000 0.00 0.0 40.15 2.66 R
2514 2588 0.179045 AAGCGTCCAAGCACTGAGTT 60.179 50.000 0.00 0.0 40.15 3.01 R
2515 2589 0.882042 CAAGCGTCCAAGCACTGAGT 60.882 55.000 0.00 0.0 40.15 3.41 R
2523 2612 1.009829 GGTATCTGCAAGCGTCCAAG 58.990 55.000 0.00 0.0 0.00 3.61 R
3482 3576 1.164411 CAGCATTTTCACACCCGCTA 58.836 50.000 0.00 0.0 0.00 4.26 R
4266 4419 2.036346 GGAAGCACATCAGGCAAAGTTT 59.964 45.455 0.00 0.0 0.00 2.66 R
5436 5593 2.089980 GAACAGACCTGAGCATTGCAT 58.910 47.619 11.91 0.0 0.00 3.96 R
5721 6073 8.400186 TGATGAATAATGCTAACAGTCAACATG 58.600 33.333 0.00 0.0 0.00 3.21 R
6435 9046 0.467290 GGGGCAGTTCACAACCAAGA 60.467 55.000 0.00 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.577834 ACCAACCCAAAACTTTCATACG 57.422 40.909 0.00 0.00 0.00 3.06
31 32 3.955551 ACCAACCCAAAACTTTCATACGT 59.044 39.130 0.00 0.00 0.00 3.57
32 33 5.131784 ACCAACCCAAAACTTTCATACGTA 58.868 37.500 0.00 0.00 0.00 3.57
33 34 5.008911 ACCAACCCAAAACTTTCATACGTAC 59.991 40.000 0.00 0.00 0.00 3.67
34 35 5.239963 CCAACCCAAAACTTTCATACGTACT 59.760 40.000 0.00 0.00 0.00 2.73
35 36 6.238814 CCAACCCAAAACTTTCATACGTACTT 60.239 38.462 0.00 0.00 0.00 2.24
36 37 6.549912 ACCCAAAACTTTCATACGTACTTC 57.450 37.500 0.00 0.00 0.00 3.01
37 38 5.471116 ACCCAAAACTTTCATACGTACTTCC 59.529 40.000 0.00 0.00 0.00 3.46
38 39 5.704053 CCCAAAACTTTCATACGTACTTCCT 59.296 40.000 0.00 0.00 0.00 3.36
39 40 6.875195 CCCAAAACTTTCATACGTACTTCCTA 59.125 38.462 0.00 0.00 0.00 2.94
40 41 7.064253 CCCAAAACTTTCATACGTACTTCCTAG 59.936 40.741 0.00 0.00 0.00 3.02
50 51 2.032675 CGTACTTCCTAGTTCCTACCGC 59.967 54.545 0.00 0.00 35.78 5.68
55 56 1.287146 TCCTAGTTCCTACCGCTTCCT 59.713 52.381 0.00 0.00 0.00 3.36
72 73 4.566759 GCTTCCTTTGGTTTGTTTCTCAAC 59.433 41.667 0.00 0.00 35.61 3.18
245 246 3.324108 GACCTACCCCAACGGCCA 61.324 66.667 2.24 0.00 33.26 5.36
252 279 1.987855 CCCCAACGGCCACTCTCTA 60.988 63.158 2.24 0.00 0.00 2.43
256 283 1.067821 CCAACGGCCACTCTCTATCTC 59.932 57.143 2.24 0.00 0.00 2.75
266 293 3.631686 CACTCTCTATCTCCTCACACTGG 59.368 52.174 0.00 0.00 0.00 4.00
306 333 0.321564 GCTCCCCCAATTTGCCAAAC 60.322 55.000 0.00 0.00 0.00 2.93
313 340 0.867086 CAATTTGCCAAACCCAAGCG 59.133 50.000 0.00 0.00 0.00 4.68
316 343 0.755686 TTTGCCAAACCCAAGCGAAT 59.244 45.000 0.00 0.00 0.00 3.34
377 405 2.364324 TCAGTATACGATCCCTTGGCAC 59.636 50.000 0.00 0.00 0.00 5.01
402 430 3.190535 CCGGTTCCACATTTTAGTGAAGG 59.809 47.826 0.00 0.00 42.05 3.46
437 467 2.053627 GCACGCCAGCAAAATATATGC 58.946 47.619 5.49 5.49 44.15 3.14
443 473 5.221303 ACGCCAGCAAAATATATGCAGAATT 60.221 36.000 13.95 0.00 46.22 2.17
444 474 5.118050 CGCCAGCAAAATATATGCAGAATTG 59.882 40.000 13.95 4.99 46.22 2.32
446 476 6.739286 GCCAGCAAAATATATGCAGAATTGGA 60.739 38.462 16.49 0.00 46.22 3.53
517 550 0.032540 GCCTGCTTTGACAAACCTGG 59.967 55.000 12.52 12.52 0.00 4.45
518 551 0.675633 CCTGCTTTGACAAACCTGGG 59.324 55.000 10.03 2.78 0.00 4.45
520 553 1.338020 CTGCTTTGACAAACCTGGGTC 59.662 52.381 0.00 0.00 34.63 4.46
521 554 0.673985 GCTTTGACAAACCTGGGTCC 59.326 55.000 0.00 0.00 33.09 4.46
522 555 1.754201 GCTTTGACAAACCTGGGTCCT 60.754 52.381 0.00 0.00 33.09 3.85
541 574 5.162815 GGTCCTCCCTCCAGGCTATATATAT 60.163 48.000 0.00 0.00 32.91 0.86
545 578 9.609478 TCCTCCCTCCAGGCTATATATATATAT 57.391 37.037 17.37 17.37 32.91 0.86
554 587 9.486123 CAGGCTATATATATATATGGGAGCAGT 57.514 37.037 24.43 15.08 32.95 4.40
555 588 9.486123 AGGCTATATATATATATGGGAGCAGTG 57.514 37.037 24.43 5.77 32.95 3.66
556 589 9.480861 GGCTATATATATATATGGGAGCAGTGA 57.519 37.037 24.43 6.43 32.95 3.41
571 604 1.071385 CAGTGAGTGCTCCTTGTCCTT 59.929 52.381 0.00 0.00 0.00 3.36
573 606 0.397941 TGAGTGCTCCTTGTCCTTGG 59.602 55.000 0.00 0.00 0.00 3.61
602 635 1.399089 CCGTACCAAAATTAGCCGTGG 59.601 52.381 0.00 0.00 37.17 4.94
605 638 3.307782 CGTACCAAAATTAGCCGTGGTAG 59.692 47.826 1.70 0.00 45.05 3.18
606 639 3.428413 ACCAAAATTAGCCGTGGTAGT 57.572 42.857 0.00 0.00 42.60 2.73
607 640 3.078837 ACCAAAATTAGCCGTGGTAGTG 58.921 45.455 0.00 0.00 42.60 2.74
608 641 3.244630 ACCAAAATTAGCCGTGGTAGTGA 60.245 43.478 0.00 0.00 42.60 3.41
609 642 3.374058 CCAAAATTAGCCGTGGTAGTGAG 59.626 47.826 0.00 0.00 0.00 3.51
610 643 2.311124 AATTAGCCGTGGTAGTGAGC 57.689 50.000 0.00 0.00 0.00 4.26
611 644 1.486211 ATTAGCCGTGGTAGTGAGCT 58.514 50.000 0.00 0.00 37.58 4.09
612 645 2.133281 TTAGCCGTGGTAGTGAGCTA 57.867 50.000 0.00 0.00 35.03 3.32
735 776 2.565391 TCTCACCCGCTCTTCATTTACA 59.435 45.455 0.00 0.00 0.00 2.41
743 784 3.368427 CGCTCTTCATTTACACCTCCTCA 60.368 47.826 0.00 0.00 0.00 3.86
774 815 1.856920 CTCCTCCTCTACCTCCTCCTT 59.143 57.143 0.00 0.00 0.00 3.36
775 816 1.571457 TCCTCCTCTACCTCCTCCTTG 59.429 57.143 0.00 0.00 0.00 3.61
844 885 2.432146 TCCCACGATCATTCTCTTCCAG 59.568 50.000 0.00 0.00 0.00 3.86
847 888 3.868077 CCACGATCATTCTCTTCCAGAAC 59.132 47.826 0.00 0.00 44.28 3.01
849 890 5.174395 CACGATCATTCTCTTCCAGAACTT 58.826 41.667 0.00 0.00 44.28 2.66
853 894 6.917477 CGATCATTCTCTTCCAGAACTTAGAG 59.083 42.308 0.00 0.00 44.28 2.43
919 960 0.454600 CCTCGCGCTTCCAGTAGTTA 59.545 55.000 5.56 0.00 0.00 2.24
920 961 1.534175 CCTCGCGCTTCCAGTAGTTAG 60.534 57.143 5.56 0.00 0.00 2.34
935 976 3.059352 AGTTAGCGCATTGTTCCTTCT 57.941 42.857 11.47 0.00 0.00 2.85
937 978 1.086696 TAGCGCATTGTTCCTTCTGC 58.913 50.000 11.47 0.00 0.00 4.26
941 982 0.449388 GCATTGTTCCTTCTGCTCCG 59.551 55.000 0.00 0.00 0.00 4.63
943 984 1.734465 CATTGTTCCTTCTGCTCCGTC 59.266 52.381 0.00 0.00 0.00 4.79
944 985 0.319555 TTGTTCCTTCTGCTCCGTCG 60.320 55.000 0.00 0.00 0.00 5.12
947 988 0.391597 TTCCTTCTGCTCCGTCGTTT 59.608 50.000 0.00 0.00 0.00 3.60
949 990 0.038159 CCTTCTGCTCCGTCGTTTCT 60.038 55.000 0.00 0.00 0.00 2.52
952 993 0.038526 TCTGCTCCGTCGTTTCTTCC 60.039 55.000 0.00 0.00 0.00 3.46
953 994 1.344942 CTGCTCCGTCGTTTCTTCCG 61.345 60.000 0.00 0.00 0.00 4.30
954 995 1.372623 GCTCCGTCGTTTCTTCCGT 60.373 57.895 0.00 0.00 0.00 4.69
955 996 1.342796 GCTCCGTCGTTTCTTCCGTC 61.343 60.000 0.00 0.00 0.00 4.79
957 998 1.735559 CCGTCGTTTCTTCCGTCCC 60.736 63.158 0.00 0.00 0.00 4.46
958 999 2.084681 CGTCGTTTCTTCCGTCCCG 61.085 63.158 0.00 0.00 0.00 5.14
960 1001 2.356553 CGTTTCTTCCGTCCCGCA 60.357 61.111 0.00 0.00 0.00 5.69
961 1002 2.380410 CGTTTCTTCCGTCCCGCAG 61.380 63.158 0.00 0.00 0.00 5.18
987 1028 2.668550 GGTTGCGGCGAGGTTCTT 60.669 61.111 12.98 0.00 0.00 2.52
988 1029 2.677979 GGTTGCGGCGAGGTTCTTC 61.678 63.158 12.98 0.00 0.00 2.87
995 1036 0.108329 GGCGAGGTTCTTCCATTCGA 60.108 55.000 0.00 0.00 36.42 3.71
1221 1262 3.059051 GGATGCTCGATTTGATGAAGCTC 60.059 47.826 0.00 0.00 0.00 4.09
1342 1383 2.672714 TCCGATGAACTGTGAGTTTCG 58.327 47.619 0.00 0.00 38.80 3.46
1394 1435 1.260538 TTCATCCTCTGCAGCTCGGT 61.261 55.000 9.47 0.00 0.00 4.69
1397 1438 0.107945 ATCCTCTGCAGCTCGGTTTC 60.108 55.000 9.47 0.00 0.00 2.78
1439 1480 3.775316 ACCTGACTGTTCCTACAATAGGG 59.225 47.826 2.07 0.00 46.24 3.53
1474 1515 2.158449 CGCAGATTGAGGTCAGTGAAAC 59.842 50.000 0.00 0.00 0.00 2.78
1475 1516 2.158449 GCAGATTGAGGTCAGTGAAACG 59.842 50.000 0.00 0.00 45.86 3.60
1493 1534 4.410492 AACGTGATTGCTTCATCTTGTC 57.590 40.909 0.00 0.00 36.54 3.18
1546 1587 5.239525 ACATCAGAACTTACTTGGTTGCTTC 59.760 40.000 0.00 0.00 0.00 3.86
1565 1606 4.152580 GCTTCACTTCTAGTTACTGCAACC 59.847 45.833 0.00 0.00 37.93 3.77
1641 1706 5.527214 CCACACAAACAACAGACTTCAGATA 59.473 40.000 0.00 0.00 0.00 1.98
1652 1719 5.658634 ACAGACTTCAGATATGGCAGAGTTA 59.341 40.000 0.00 0.00 0.00 2.24
1683 1750 7.020914 ACTAGCAGTATTTTAAGCATGCTTC 57.979 36.000 35.10 19.87 40.95 3.86
1741 1808 6.150976 TGAAGATAAAACCCAGTTGCTACATG 59.849 38.462 0.13 0.00 0.00 3.21
1792 1861 6.927381 GCAAGTTATTACATACCACGGAGTAT 59.073 38.462 0.00 0.00 41.61 2.12
1793 1862 8.084073 GCAAGTTATTACATACCACGGAGTATA 58.916 37.037 0.00 0.00 41.61 1.47
1856 1925 1.404391 GCATTCCAGCATCTCTTGTGG 59.596 52.381 0.00 0.00 0.00 4.17
1865 1934 2.031069 GCATCTCTTGTGGCATGCATAG 60.031 50.000 21.36 10.34 41.16 2.23
1958 2027 7.325821 TGAAATGAGCGATGTGTTCAAATTTAC 59.674 33.333 0.00 0.00 41.42 2.01
1991 2060 2.416547 GCCGACGCAAATAGCATGATAT 59.583 45.455 0.00 0.00 46.13 1.63
2138 2212 6.573664 TTGAGGTGATCCAACAGTAAATTG 57.426 37.500 0.00 0.00 35.89 2.32
2355 2429 5.290885 GCAGAACCTTGTTTTCGTTCAAAAT 59.709 36.000 0.00 0.00 38.67 1.82
2451 2525 6.422776 AACTCAGTTCTATGCCAAAATACG 57.577 37.500 0.00 0.00 0.00 3.06
2461 2535 1.946768 GCCAAAATACGCTCATAGGCA 59.053 47.619 0.00 0.00 40.50 4.75
2469 2543 9.102757 CAAAATACGCTCATAGGCATCTATATT 57.897 33.333 0.00 0.00 34.62 1.28
2509 2583 4.043184 TGCCCATCCTGCTCATGATTATTA 59.957 41.667 0.00 0.00 0.00 0.98
2510 2584 5.012239 GCCCATCCTGCTCATGATTATTAA 58.988 41.667 0.00 0.00 0.00 1.40
2512 2586 6.015180 GCCCATCCTGCTCATGATTATTAAAA 60.015 38.462 0.00 0.00 0.00 1.52
2513 2587 7.471819 GCCCATCCTGCTCATGATTATTAAAAA 60.472 37.037 0.00 0.00 0.00 1.94
2639 2728 6.042093 TCTGATGACCATTCAATACTACTCCC 59.958 42.308 0.00 0.00 34.61 4.30
2755 2844 5.597813 AGTTGCACGAGACTTCAAAATAG 57.402 39.130 0.00 0.00 0.00 1.73
2829 2918 6.264292 ACTCTTACTCTATCGTCATGCAGAAT 59.736 38.462 0.00 0.00 0.00 2.40
2913 3002 3.313012 CTGTGGAACGGTTCATACTCA 57.687 47.619 21.36 7.79 42.39 3.41
3050 3139 6.363357 GCAAAGAAAGCTAACAGGTGTATTTG 59.637 38.462 10.00 10.00 42.10 2.32
3057 3146 5.643777 AGCTAACAGGTGTATTTGCTTACAG 59.356 40.000 0.00 0.00 32.92 2.74
3482 3576 7.759489 TTTCACATTAGTGTTTAGAAGGCAT 57.241 32.000 0.00 0.00 46.01 4.40
3517 3668 0.255890 GCTGGCTTCCTAATGTCCCA 59.744 55.000 0.00 0.00 0.00 4.37
3518 3669 1.133668 GCTGGCTTCCTAATGTCCCAT 60.134 52.381 0.00 0.00 0.00 4.00
3614 3765 3.951037 TGTCTTCTGTAGCAAAAAGGCAA 59.049 39.130 0.00 0.00 30.92 4.52
3963 4114 5.769662 ACCAATGCACATAATACATAGTGGG 59.230 40.000 0.00 0.00 29.63 4.61
4115 4268 5.634020 AGTCAATACAAGTAAGACGAAGCAC 59.366 40.000 0.00 0.00 32.76 4.40
4266 4419 9.869757 TCAACATAAGAGAACTCAAAATCGATA 57.130 29.630 0.00 0.00 0.00 2.92
4302 4456 4.881273 TGTGCTTCCATACCATGTTATCAC 59.119 41.667 0.00 0.00 0.00 3.06
4427 4583 7.713073 TCGGATGCATACAGATATTTTGTGTTA 59.287 33.333 10.18 0.00 0.00 2.41
4482 4638 6.534475 ACGAAGTCATTAACTGGTATACCA 57.466 37.500 23.23 23.23 40.01 3.25
4483 4639 6.335777 ACGAAGTCATTAACTGGTATACCAC 58.664 40.000 21.05 8.52 37.33 4.16
4484 4640 6.154021 ACGAAGTCATTAACTGGTATACCACT 59.846 38.462 21.05 13.00 37.33 4.00
4485 4641 7.340232 ACGAAGTCATTAACTGGTATACCACTA 59.660 37.037 21.05 12.01 37.33 2.74
4486 4642 8.358148 CGAAGTCATTAACTGGTATACCACTAT 58.642 37.037 21.05 11.80 42.01 2.12
4489 4645 8.790718 AGTCATTAACTGGTATACCACTATACG 58.209 37.037 21.05 12.29 42.01 3.06
4497 4653 9.224267 ACTGGTATACCACTATACGTATTAGTG 57.776 37.037 21.05 23.83 42.01 2.74
4604 4760 5.485620 GGAGATAAGTTGGACCGTAAAACT 58.514 41.667 0.00 0.00 35.70 2.66
4629 4785 3.197983 GGTGCATAACTGGTACTTCCTCT 59.802 47.826 0.00 0.00 37.07 3.69
4697 4853 7.277098 GCATGCACAAAGAATCAGTAATGAATT 59.723 33.333 14.21 0.00 0.00 2.17
4748 4905 9.384764 GGAATTAGACTCATTTACAAGCTTACT 57.615 33.333 0.00 0.00 0.00 2.24
4828 4985 4.771903 TGCTGGTGTCAGTAACTAACAAA 58.228 39.130 0.00 0.00 42.78 2.83
4830 4987 4.814771 GCTGGTGTCAGTAACTAACAAACT 59.185 41.667 0.00 0.00 42.78 2.66
4831 4988 5.277345 GCTGGTGTCAGTAACTAACAAACTG 60.277 44.000 0.00 0.00 42.78 3.16
5158 5315 5.957842 ATGCCTTGAAATGTTTCGAACTA 57.042 34.783 0.00 0.00 40.01 2.24
5178 5335 6.780457 ACTAGGAGCATGCATTGTTTTATT 57.220 33.333 21.98 0.00 0.00 1.40
5179 5336 6.567050 ACTAGGAGCATGCATTGTTTTATTG 58.433 36.000 21.98 0.42 0.00 1.90
5250 5407 6.650120 TCCTTCATGATTAAAGGGACACTAC 58.350 40.000 10.61 0.00 42.00 2.73
5363 5520 1.957668 TGCGATGGATGTCTGAATGG 58.042 50.000 0.00 0.00 0.00 3.16
5638 5795 6.311735 TGCTATACCCTATATATCGGCATCA 58.688 40.000 0.00 0.00 0.00 3.07
5657 5997 7.082602 GGCATCATACTTAAGAGCATGATTTG 58.917 38.462 19.85 15.49 36.28 2.32
5717 6069 6.037500 CGATTCTGATATTCCTTTTCTGTGCA 59.962 38.462 0.00 0.00 0.00 4.57
5718 6070 7.255035 CGATTCTGATATTCCTTTTCTGTGCAT 60.255 37.037 0.00 0.00 0.00 3.96
5719 6071 6.688637 TCTGATATTCCTTTTCTGTGCATG 57.311 37.500 0.00 0.00 0.00 4.06
5721 6073 6.317140 TCTGATATTCCTTTTCTGTGCATGTC 59.683 38.462 0.00 0.00 0.00 3.06
5724 6076 4.508461 TTCCTTTTCTGTGCATGTCATG 57.492 40.909 8.56 8.56 0.00 3.07
5725 6077 3.489355 TCCTTTTCTGTGCATGTCATGT 58.511 40.909 14.26 0.00 0.00 3.21
5726 6078 3.890756 TCCTTTTCTGTGCATGTCATGTT 59.109 39.130 14.26 0.00 0.00 2.71
5727 6079 3.985279 CCTTTTCTGTGCATGTCATGTTG 59.015 43.478 14.26 3.11 0.00 3.33
5728 6080 4.261698 CCTTTTCTGTGCATGTCATGTTGA 60.262 41.667 14.26 5.20 0.00 3.18
6124 8699 4.608948 AGGTTTCAGTGAGTCCTTACTG 57.391 45.455 11.78 11.78 45.26 2.74
6327 8938 6.533723 CAGCATGCATTAAATTCACAGACATT 59.466 34.615 21.98 0.00 0.00 2.71
6475 9095 6.388278 CCCCGTTTAGAAGCATCTATACTAC 58.612 44.000 14.70 5.12 37.72 2.73
6700 9320 7.362662 CCATCTTCATCCATTTTATACCAACG 58.637 38.462 0.00 0.00 0.00 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 6.308371 AGTACGTATGAAAGTTTTGGGTTG 57.692 37.500 0.00 0.00 0.00 3.77
15 16 6.796705 AGGAAGTACGTATGAAAGTTTTGG 57.203 37.500 0.00 0.00 0.00 3.28
30 31 3.286353 AGCGGTAGGAACTAGGAAGTAC 58.714 50.000 0.00 0.00 44.14 2.73
31 32 3.659183 AGCGGTAGGAACTAGGAAGTA 57.341 47.619 0.00 0.00 44.14 2.24
32 33 2.528673 AGCGGTAGGAACTAGGAAGT 57.471 50.000 0.00 0.00 44.14 3.01
33 34 2.101082 GGAAGCGGTAGGAACTAGGAAG 59.899 54.545 0.00 0.00 44.14 3.46
34 35 2.105766 GGAAGCGGTAGGAACTAGGAA 58.894 52.381 0.00 0.00 44.14 3.36
35 36 1.287146 AGGAAGCGGTAGGAACTAGGA 59.713 52.381 0.00 0.00 44.14 2.94
36 37 1.777941 AGGAAGCGGTAGGAACTAGG 58.222 55.000 0.00 0.00 44.14 3.02
37 38 3.522553 CAAAGGAAGCGGTAGGAACTAG 58.477 50.000 0.00 0.00 44.14 2.57
38 39 2.235402 CCAAAGGAAGCGGTAGGAACTA 59.765 50.000 0.00 0.00 41.75 2.24
39 40 1.003233 CCAAAGGAAGCGGTAGGAACT 59.997 52.381 0.00 0.00 46.37 3.01
40 41 1.271217 ACCAAAGGAAGCGGTAGGAAC 60.271 52.381 0.00 0.00 0.00 3.62
50 51 5.109210 GGTTGAGAAACAAACCAAAGGAAG 58.891 41.667 0.00 0.00 40.01 3.46
245 246 3.897239 CCAGTGTGAGGAGATAGAGAGT 58.103 50.000 0.00 0.00 0.00 3.24
252 279 3.023949 GCGGCCAGTGTGAGGAGAT 62.024 63.158 2.24 0.00 0.00 2.75
284 311 2.659063 GGCAAATTGGGGGAGCACC 61.659 63.158 0.00 0.00 39.11 5.01
285 312 1.479368 TTGGCAAATTGGGGGAGCAC 61.479 55.000 0.00 0.00 0.00 4.40
286 313 0.765903 TTTGGCAAATTGGGGGAGCA 60.766 50.000 8.93 0.00 0.00 4.26
287 314 0.321564 GTTTGGCAAATTGGGGGAGC 60.322 55.000 16.74 0.00 0.00 4.70
288 315 0.324614 GGTTTGGCAAATTGGGGGAG 59.675 55.000 16.74 0.00 0.00 4.30
289 316 1.130678 GGGTTTGGCAAATTGGGGGA 61.131 55.000 16.74 0.00 0.00 4.81
306 333 1.426041 CCGTCGGTTATTCGCTTGGG 61.426 60.000 2.08 0.00 0.00 4.12
313 340 1.152383 GCAGGCTCCGTCGGTTATTC 61.152 60.000 11.88 0.00 0.00 1.75
316 343 2.992689 TGCAGGCTCCGTCGGTTA 60.993 61.111 11.88 0.00 0.00 2.85
364 392 2.190578 GGGAGTGCCAAGGGATCG 59.809 66.667 0.00 0.00 35.15 3.69
377 405 2.747446 CACTAAAATGTGGAACCGGGAG 59.253 50.000 6.32 0.00 34.36 4.30
402 430 0.179225 CGTGCCGTGCTTATGTTCAC 60.179 55.000 0.00 0.00 0.00 3.18
437 467 5.090757 CGTTGTCATGTCATTCCAATTCTG 58.909 41.667 0.00 0.00 0.00 3.02
443 473 1.164411 GCCGTTGTCATGTCATTCCA 58.836 50.000 0.00 0.00 0.00 3.53
444 474 1.164411 TGCCGTTGTCATGTCATTCC 58.836 50.000 0.00 0.00 0.00 3.01
446 476 1.952990 TGTTGCCGTTGTCATGTCATT 59.047 42.857 0.00 0.00 0.00 2.57
517 550 0.487772 TATAGCCTGGAGGGAGGACC 59.512 60.000 0.00 0.00 34.69 4.46
518 551 2.632763 ATATAGCCTGGAGGGAGGAC 57.367 55.000 0.00 0.00 34.69 3.85
520 553 9.653516 CATATATATATATAGCCTGGAGGGAGG 57.346 40.741 13.72 0.00 37.23 4.30
521 554 9.653516 CCATATATATATATAGCCTGGAGGGAG 57.346 40.741 18.41 0.00 37.23 4.30
522 555 8.578376 CCCATATATATATATAGCCTGGAGGGA 58.422 40.741 22.10 1.05 37.23 4.20
554 587 0.397941 CCAAGGACAAGGAGCACTCA 59.602 55.000 0.00 0.00 0.00 3.41
555 588 0.957888 GCCAAGGACAAGGAGCACTC 60.958 60.000 0.00 0.00 0.00 3.51
556 589 1.073897 GCCAAGGACAAGGAGCACT 59.926 57.895 0.00 0.00 0.00 4.40
557 590 1.973812 GGCCAAGGACAAGGAGCAC 60.974 63.158 0.00 0.00 0.00 4.40
558 591 2.436109 GGCCAAGGACAAGGAGCA 59.564 61.111 0.00 0.00 0.00 4.26
559 592 2.747855 CGGCCAAGGACAAGGAGC 60.748 66.667 2.24 0.00 0.00 4.70
560 593 2.045926 CCGGCCAAGGACAAGGAG 60.046 66.667 2.24 0.00 0.00 3.69
561 594 4.344865 GCCGGCCAAGGACAAGGA 62.345 66.667 18.11 0.00 0.00 3.36
605 638 1.746991 GGCCTGGCAAGTAGCTCAC 60.747 63.158 22.05 0.00 44.79 3.51
606 639 2.671070 GGCCTGGCAAGTAGCTCA 59.329 61.111 22.05 0.00 44.79 4.26
607 640 2.512515 CGGCCTGGCAAGTAGCTC 60.513 66.667 22.05 0.00 44.79 4.09
608 641 3.316573 GACGGCCTGGCAAGTAGCT 62.317 63.158 22.05 0.00 44.79 3.32
609 642 2.820037 GACGGCCTGGCAAGTAGC 60.820 66.667 22.05 5.35 44.65 3.58
610 643 2.125106 GGACGGCCTGGCAAGTAG 60.125 66.667 22.05 8.28 0.00 2.57
611 644 4.077184 CGGACGGCCTGGCAAGTA 62.077 66.667 22.05 0.00 0.00 2.24
735 776 1.979693 GAGCGTGAGGTGAGGAGGT 60.980 63.158 0.00 0.00 45.11 3.85
774 815 1.263484 GAGACGAGTGAACGAGTGACA 59.737 52.381 0.00 0.00 37.03 3.58
775 816 1.399984 GGAGACGAGTGAACGAGTGAC 60.400 57.143 0.00 0.00 37.03 3.67
853 894 8.553459 TCCTCTAACTGATCTTCATTTTTGTC 57.447 34.615 0.00 0.00 0.00 3.18
919 960 0.607489 AGCAGAAGGAACAATGCGCT 60.607 50.000 9.73 0.00 43.41 5.92
920 961 0.179179 GAGCAGAAGGAACAATGCGC 60.179 55.000 0.00 0.00 43.41 6.09
935 976 1.372499 CGGAAGAAACGACGGAGCA 60.372 57.895 0.00 0.00 0.00 4.26
937 978 0.731855 GGACGGAAGAAACGACGGAG 60.732 60.000 0.00 0.00 34.93 4.63
970 1011 2.668550 AAGAACCTCGCCGCAACC 60.669 61.111 0.00 0.00 0.00 3.77
971 1012 2.677979 GGAAGAACCTCGCCGCAAC 61.678 63.158 0.00 0.00 35.41 4.17
972 1013 2.358247 GGAAGAACCTCGCCGCAA 60.358 61.111 0.00 0.00 35.41 4.85
973 1014 2.463589 AATGGAAGAACCTCGCCGCA 62.464 55.000 0.00 0.00 39.86 5.69
975 1016 1.421410 CGAATGGAAGAACCTCGCCG 61.421 60.000 0.00 0.00 39.86 6.46
976 1017 0.108329 TCGAATGGAAGAACCTCGCC 60.108 55.000 0.00 0.00 36.63 5.54
978 1019 2.941453 TCTCGAATGGAAGAACCTCG 57.059 50.000 0.00 0.00 37.58 4.63
985 1026 1.863454 CGCCATCTTCTCGAATGGAAG 59.137 52.381 16.40 11.45 40.85 3.46
986 1027 1.939974 CGCCATCTTCTCGAATGGAA 58.060 50.000 16.40 2.02 36.31 3.53
987 1028 0.530650 GCGCCATCTTCTCGAATGGA 60.531 55.000 16.40 1.16 36.31 3.41
988 1029 0.531532 AGCGCCATCTTCTCGAATGG 60.532 55.000 2.29 9.15 37.25 3.16
995 1036 0.388659 CAGAGCTAGCGCCATCTTCT 59.611 55.000 15.37 4.68 36.60 2.85
1030 1071 1.688772 CAGGATCCAATTGCCAGGAG 58.311 55.000 15.82 0.00 37.34 3.69
1197 1238 3.314635 GCTTCATCAAATCGAGCATCCTT 59.685 43.478 0.00 0.00 33.68 3.36
1221 1262 2.177580 ACCGTCAGCGTTGTGGTTG 61.178 57.895 11.76 0.00 32.70 3.77
1342 1383 5.284079 AGTCAGACATTTGCAATTTGTGAC 58.716 37.500 17.40 17.68 0.00 3.67
1394 1435 1.254026 ATGACTCGTCCACCTCGAAA 58.746 50.000 0.00 0.00 36.89 3.46
1397 1438 1.092348 TGTATGACTCGTCCACCTCG 58.908 55.000 0.00 0.00 0.00 4.63
1474 1515 4.408993 TTGACAAGATGAAGCAATCACG 57.591 40.909 0.00 0.00 41.93 4.35
1475 1516 7.148689 GGAATTTTGACAAGATGAAGCAATCAC 60.149 37.037 0.00 0.00 41.93 3.06
1546 1587 3.008049 AGGGGTTGCAGTAACTAGAAGTG 59.992 47.826 0.00 0.00 39.31 3.16
1565 1606 5.067023 GGCAATTATCACAAAGAAGAGAGGG 59.933 44.000 0.00 0.00 0.00 4.30
1641 1706 4.502259 GCTAGTAGCATGTAACTCTGCCAT 60.502 45.833 17.47 0.00 41.89 4.40
1675 1742 2.211806 TGTTTTGCAAAGGAAGCATGC 58.788 42.857 10.51 10.51 42.33 4.06
1683 1750 4.335400 ACTGGGTTATGTTTTGCAAAGG 57.665 40.909 12.41 0.00 0.00 3.11
1713 1780 7.885922 TGTAGCAACTGGGTTTTATCTTCATAA 59.114 33.333 0.00 0.00 0.00 1.90
1714 1781 7.398829 TGTAGCAACTGGGTTTTATCTTCATA 58.601 34.615 0.00 0.00 0.00 2.15
1783 1852 5.134202 TGCCTTGTGATATATACTCCGTG 57.866 43.478 0.00 0.00 0.00 4.94
1792 1861 6.747414 ACTACCTTGATGCCTTGTGATATA 57.253 37.500 0.00 0.00 0.00 0.86
1793 1862 5.636903 ACTACCTTGATGCCTTGTGATAT 57.363 39.130 0.00 0.00 0.00 1.63
1865 1934 2.423577 CTGGTAACCAGGTTACAGCAC 58.576 52.381 34.04 21.49 46.94 4.40
1920 1989 4.807834 TCGCTCATTTCATAAGCTGAAGAG 59.192 41.667 0.00 0.00 44.48 2.85
1941 2010 7.460120 GCATCTTTCGTAAATTTGAACACATCG 60.460 37.037 0.00 0.00 0.00 3.84
1958 2027 1.059369 CGTCGGCTTGCATCTTTCG 59.941 57.895 0.00 0.00 0.00 3.46
1991 2060 9.263538 GCTGGCATCAATTATTTTTATGAATCA 57.736 29.630 0.00 0.00 0.00 2.57
2016 2085 5.410067 TGAGCCTACAAAATATTGCAAAGC 58.590 37.500 1.71 0.00 40.34 3.51
2138 2212 6.563422 TGGCTAAATGTCTGCATTCATAAAC 58.437 36.000 4.58 0.00 43.89 2.01
2355 2429 8.691661 AGTAATTTCAAGGTTCTGCTTCTTTA 57.308 30.769 0.00 0.00 0.00 1.85
2429 2503 4.332819 GCGTATTTTGGCATAGAACTGAGT 59.667 41.667 0.00 0.00 0.00 3.41
2449 2523 9.672673 ATTTAAAATATAGATGCCTATGAGCGT 57.327 29.630 0.00 0.00 36.35 5.07
2512 2586 0.663153 GCGTCCAAGCACTGAGTTTT 59.337 50.000 0.00 0.00 37.05 2.43
2513 2587 0.179045 AGCGTCCAAGCACTGAGTTT 60.179 50.000 0.00 0.00 40.15 2.66
2514 2588 0.179045 AAGCGTCCAAGCACTGAGTT 60.179 50.000 0.00 0.00 40.15 3.01
2515 2589 0.882042 CAAGCGTCCAAGCACTGAGT 60.882 55.000 0.00 0.00 40.15 3.41
2516 2590 1.864862 CAAGCGTCCAAGCACTGAG 59.135 57.895 0.00 0.00 40.15 3.35
2517 2591 2.253758 GCAAGCGTCCAAGCACTGA 61.254 57.895 0.00 0.00 40.15 3.41
2518 2592 2.253452 GCAAGCGTCCAAGCACTG 59.747 61.111 0.00 0.00 40.15 3.66
2519 2593 2.203195 TGCAAGCGTCCAAGCACT 60.203 55.556 0.00 0.00 40.15 4.40
2523 2612 1.009829 GGTATCTGCAAGCGTCCAAG 58.990 55.000 0.00 0.00 0.00 3.61
2639 2728 6.530534 CCAACTACAAGTATTTCGGTACAGAG 59.469 42.308 0.00 0.00 0.00 3.35
2755 2844 5.982516 TGTGGAGAAAACATAAACACAATGC 59.017 36.000 0.00 0.00 34.80 3.56
2829 2918 3.205338 CACGATATGCCAATGGAGAACA 58.795 45.455 2.05 0.00 0.00 3.18
2913 3002 7.015974 TCAGGCATTGTGTATCTCTCAGAATAT 59.984 37.037 0.00 0.00 29.82 1.28
3050 3139 5.500931 GCAGATGTGAATTACGACTGTAAGC 60.501 44.000 0.00 0.00 43.45 3.09
3057 3146 4.928661 AAGTGCAGATGTGAATTACGAC 57.071 40.909 0.00 0.00 0.00 4.34
3147 3236 2.623416 ACTGCGTATCTAGCTATGTGCA 59.377 45.455 0.00 0.15 45.94 4.57
3401 3494 7.688167 CAGTCGTGATTTTGTAATGTACATGAC 59.312 37.037 15.58 15.58 40.67 3.06
3402 3495 7.386573 ACAGTCGTGATTTTGTAATGTACATGA 59.613 33.333 9.63 0.00 38.68 3.07
3422 3515 1.714460 GACGTGTTCTAGCAACAGTCG 59.286 52.381 0.00 10.31 0.00 4.18
3479 3573 1.798813 GCATTTTCACACCCGCTATGC 60.799 52.381 0.00 0.00 0.00 3.14
3482 3576 1.164411 CAGCATTTTCACACCCGCTA 58.836 50.000 0.00 0.00 0.00 4.26
3549 3700 2.430694 GCAAGTCAAGGTTGGTTCCTTT 59.569 45.455 0.00 0.00 44.36 3.11
3614 3765 5.978814 ACTCTACGCTCACTGGATAAAATT 58.021 37.500 0.00 0.00 0.00 1.82
4072 4225 2.840651 ACTTCATCACCTCCTAAGTGGG 59.159 50.000 0.00 0.00 35.87 4.61
4266 4419 2.036346 GGAAGCACATCAGGCAAAGTTT 59.964 45.455 0.00 0.00 0.00 2.66
4351 4506 6.153340 CCTGTGTACCATGAAAAAGGATGATT 59.847 38.462 0.00 0.00 0.00 2.57
4361 4516 9.521841 TTATTATTCAACCTGTGTACCATGAAA 57.478 29.630 0.00 0.00 31.37 2.69
4369 4525 8.103935 TCATGTGGTTATTATTCAACCTGTGTA 58.896 33.333 5.89 0.00 44.83 2.90
4427 4583 6.264067 GTGATATTGCTATCTTTTGGGCTCTT 59.736 38.462 0.00 0.00 35.69 2.85
4485 4641 8.889717 CCTGTGAAATTTTCCACTAATACGTAT 58.110 33.333 1.14 1.14 34.57 3.06
4486 4642 7.334921 CCCTGTGAAATTTTCCACTAATACGTA 59.665 37.037 6.68 0.00 34.57 3.57
4487 4643 6.150474 CCCTGTGAAATTTTCCACTAATACGT 59.850 38.462 6.68 0.00 34.57 3.57
4488 4644 6.150474 ACCCTGTGAAATTTTCCACTAATACG 59.850 38.462 6.68 0.00 34.57 3.06
4489 4645 7.462571 ACCCTGTGAAATTTTCCACTAATAC 57.537 36.000 6.68 0.00 34.57 1.89
4497 4653 5.183228 TCTATCGACCCTGTGAAATTTTCC 58.817 41.667 6.68 0.00 0.00 3.13
4604 4760 3.558321 GGAAGTACCAGTTATGCACCACA 60.558 47.826 0.00 0.00 38.79 4.17
4629 4785 4.018506 TCCAACAGAGCCCTTTTCATGATA 60.019 41.667 0.00 0.00 0.00 2.15
4748 4905 8.334263 TGTGAGCATAAATGTCAAGAACAATA 57.666 30.769 0.00 0.00 42.37 1.90
4828 4985 6.603201 AGCCTGTTAATTTATGTGCATACAGT 59.397 34.615 0.00 0.00 40.79 3.55
4830 4987 7.257003 CAAGCCTGTTAATTTATGTGCATACA 58.743 34.615 0.00 0.00 41.89 2.29
4831 4988 6.697019 CCAAGCCTGTTAATTTATGTGCATAC 59.303 38.462 0.00 0.00 0.00 2.39
5158 5315 5.664294 TCAATAAAACAATGCATGCTCCT 57.336 34.783 20.33 0.25 0.00 3.69
5211 5368 3.411446 TGAAGGAATGCAGTGTAGTTGG 58.589 45.455 0.00 0.00 0.00 3.77
5220 5377 5.595542 TCCCTTTAATCATGAAGGAATGCAG 59.404 40.000 12.02 0.00 43.32 4.41
5250 5407 3.346315 TGTCTAATCAGGCAACATGGTG 58.654 45.455 6.32 6.32 32.05 4.17
5436 5593 2.089980 GAACAGACCTGAGCATTGCAT 58.910 47.619 11.91 0.00 0.00 3.96
5721 6073 8.400186 TGATGAATAATGCTAACAGTCAACATG 58.600 33.333 0.00 0.00 0.00 3.21
5773 6125 7.864108 TTGGTGAGTCAAAATATGTCATAGG 57.136 36.000 0.00 0.00 0.00 2.57
6124 8699 6.122964 AGAGGGGCAGAAATACATAAAGAAC 58.877 40.000 0.00 0.00 0.00 3.01
6327 8938 6.103997 GTGGATTCTTTGTCGATAGTAACCA 58.896 40.000 0.00 0.00 37.40 3.67
6433 9044 1.476833 GGGCAGTTCACAACCAAGAGA 60.477 52.381 0.00 0.00 0.00 3.10
6434 9045 0.954452 GGGCAGTTCACAACCAAGAG 59.046 55.000 0.00 0.00 0.00 2.85
6435 9046 0.467290 GGGGCAGTTCACAACCAAGA 60.467 55.000 0.00 0.00 0.00 3.02
6436 9047 1.795170 CGGGGCAGTTCACAACCAAG 61.795 60.000 0.00 0.00 0.00 3.61
6437 9048 1.826054 CGGGGCAGTTCACAACCAA 60.826 57.895 0.00 0.00 0.00 3.67
6475 9095 3.519579 CATGTCTCAGCCTGTCTTAGTG 58.480 50.000 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.