Multiple sequence alignment - TraesCS3B01G434400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G434400 chr3B 100.000 3446 0 0 1 3446 672854458 672851013 0.000000e+00 6364.0
1 TraesCS3B01G434400 chr3B 100.000 113 0 0 3792 3904 672850667 672850555 3.950000e-50 209.0
2 TraesCS3B01G434400 chr3B 84.615 104 16 0 3800 3903 119478394 119478291 1.920000e-18 104.0
3 TraesCS3B01G434400 chr3D 91.609 3015 154 43 1 2960 511333552 511330582 0.000000e+00 4074.0
4 TraesCS3B01G434400 chr3D 94.595 37 2 0 3350 3386 395005958 395005994 1.520000e-04 58.4
5 TraesCS3B01G434400 chr3A 90.593 1839 112 29 630 2424 647465713 647463892 0.000000e+00 2381.0
6 TraesCS3B01G434400 chr3A 86.269 772 68 17 2469 3221 647463888 647463136 0.000000e+00 804.0
7 TraesCS3B01G434400 chr3A 90.212 378 19 4 262 628 647466169 647465799 9.810000e-131 477.0
8 TraesCS3B01G434400 chr3A 86.916 214 21 1 1 214 647467640 647467434 2.350000e-57 233.0
9 TraesCS3B01G434400 chr3A 88.776 98 10 1 3252 3349 647463134 647463038 6.850000e-23 119.0
10 TraesCS3B01G434400 chr3A 83.810 105 17 0 3800 3904 87704087 87703983 2.480000e-17 100.0
11 TraesCS3B01G434400 chr7D 86.139 101 13 1 3800 3899 364412831 364412731 1.480000e-19 108.0
12 TraesCS3B01G434400 chr7D 85.897 78 7 4 3792 3868 269696655 269696581 3.230000e-11 80.5
13 TraesCS3B01G434400 chr6D 82.609 115 12 5 3794 3904 269881786 269881676 1.150000e-15 95.3
14 TraesCS3B01G434400 chr6D 80.952 105 18 2 3800 3904 312920771 312920669 8.990000e-12 82.4
15 TraesCS3B01G434400 chr7B 81.579 114 17 4 3792 3904 271070348 271070238 1.490000e-14 91.6
16 TraesCS3B01G434400 chr7B 100.000 35 0 0 627 661 98980890 98980924 9.050000e-07 65.8
17 TraesCS3B01G434400 chr6B 83.908 87 12 2 3794 3880 513683738 513683822 8.990000e-12 82.4
18 TraesCS3B01G434400 chr1D 80.556 108 19 1 3797 3904 425542069 425541964 8.990000e-12 82.4
19 TraesCS3B01G434400 chr2B 97.222 36 1 0 628 663 654658110 654658075 1.170000e-05 62.1
20 TraesCS3B01G434400 chr2B 97.222 36 1 0 628 663 654708216 654708181 1.170000e-05 62.1
21 TraesCS3B01G434400 chr2B 97.222 36 1 0 628 663 654737142 654737107 1.170000e-05 62.1
22 TraesCS3B01G434400 chr2B 100.000 29 0 0 1818 1846 608541022 608541050 2.000000e-03 54.7
23 TraesCS3B01G434400 chr2A 94.444 36 2 0 1818 1853 661082862 661082897 5.450000e-04 56.5
24 TraesCS3B01G434400 chr2D 100.000 29 0 0 1818 1846 516863424 516863452 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G434400 chr3B 672850555 672854458 3903 True 3286.5 6364 100.0000 1 3904 2 chr3B.!!$R2 3903
1 TraesCS3B01G434400 chr3D 511330582 511333552 2970 True 4074.0 4074 91.6090 1 2960 1 chr3D.!!$R1 2959
2 TraesCS3B01G434400 chr3A 647463038 647467640 4602 True 802.8 2381 88.5532 1 3349 5 chr3A.!!$R2 3348

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
517 1763 0.458669 GTCGCGGGATCCTCAAACTA 59.541 55.000 12.58 0.00 0.00 2.24 F
824 2162 0.725784 GAACTCACCAAACGCATGCG 60.726 55.000 36.79 36.79 46.03 4.73 F
939 2287 1.471287 CACTGCTTGATCACCATGTGG 59.529 52.381 0.00 0.00 42.17 4.17 F
1687 3044 0.033504 AGTCTTGACGTGGCATTCGT 59.966 50.000 2.55 2.55 44.27 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1668 3025 0.033504 ACGAATGCCACGTCAAGACT 59.966 50.0 0.00 0.00 39.87 3.24 R
1669 3026 0.163788 CACGAATGCCACGTCAAGAC 59.836 55.0 0.00 0.00 42.07 3.01 R
2295 3667 0.594796 GTCGCTGCACCCAACTTTTG 60.595 55.0 0.00 0.00 0.00 2.44 R
3222 4628 0.250234 TGATTTCACTCTCCTGCGGG 59.750 55.0 4.71 4.71 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 84 3.073650 AGGAGTCAAATTTGCTCTCCAGT 59.926 43.478 35.48 25.07 43.99 4.00
123 125 4.411540 AGTCTATGGACCTCGGACTACTAA 59.588 45.833 5.47 0.00 43.05 2.24
188 190 1.733360 GCGTTTCACCGGCTGTTAATA 59.267 47.619 0.00 0.00 0.00 0.98
230 922 2.032528 CCCGCTCCACTCAAGCAA 59.967 61.111 0.00 0.00 39.81 3.91
261 1488 1.216990 CCTTCCTTAGGTCATGGGCT 58.783 55.000 0.00 0.00 39.39 5.19
263 1490 1.839994 CTTCCTTAGGTCATGGGCTCA 59.160 52.381 0.00 0.00 0.00 4.26
264 1491 2.196742 TCCTTAGGTCATGGGCTCAT 57.803 50.000 0.00 0.00 0.00 2.90
265 1492 6.802361 CCTTCCTTAGGTCATGGGCTCATG 62.802 54.167 21.16 21.16 42.39 3.07
292 1520 4.202151 GCTTTCTGGTGGTCAAAAGATTGT 60.202 41.667 0.00 0.00 37.79 2.71
418 1664 2.032675 GCAGCCATAGAAGTTGCTAAGC 59.967 50.000 0.00 0.00 31.69 3.09
517 1763 0.458669 GTCGCGGGATCCTCAAACTA 59.541 55.000 12.58 0.00 0.00 2.24
606 1857 9.209175 GTACTAAGCTCAGGTCAATTAATATGG 57.791 37.037 0.00 0.00 0.00 2.74
778 2116 3.689161 AGCTAGCACACGCATGAAATTTA 59.311 39.130 18.83 0.00 42.27 1.40
783 2121 3.919804 GCACACGCATGAAATTTACATGT 59.080 39.130 21.30 2.69 44.52 3.21
824 2162 0.725784 GAACTCACCAAACGCATGCG 60.726 55.000 36.79 36.79 46.03 4.73
846 2184 8.312896 TGCGTTTTAGAAAGTGTTATCATACA 57.687 30.769 0.00 0.00 0.00 2.29
915 2253 2.103263 GCTGGTCTCCAATGGTAGGTAG 59.897 54.545 0.00 0.00 30.80 3.18
920 2258 4.284178 GTCTCCAATGGTAGGTAGGTACA 58.716 47.826 0.00 0.00 0.00 2.90
938 2286 2.156917 ACACTGCTTGATCACCATGTG 58.843 47.619 13.28 13.28 34.45 3.21
939 2287 1.471287 CACTGCTTGATCACCATGTGG 59.529 52.381 0.00 0.00 42.17 4.17
985 2333 5.685728 AGGCTCTAAATTACTGATTCACCC 58.314 41.667 0.00 0.00 0.00 4.61
1129 2481 3.177920 CGCAGACAGCAGCTCGAC 61.178 66.667 0.00 0.00 46.13 4.20
1638 2995 7.408132 GGTACGTATAAGTATACACGTCTCA 57.592 40.000 18.80 3.68 43.61 3.27
1643 3000 7.278646 ACGTATAAGTATACACGTCTCACAGAA 59.721 37.037 11.95 0.00 43.61 3.02
1644 3001 7.792967 CGTATAAGTATACACGTCTCACAGAAG 59.207 40.741 5.50 0.00 38.72 2.85
1659 3016 4.099120 CACAGAAGTCGACGATTTCTAGG 58.901 47.826 28.27 21.10 36.68 3.02
1661 3018 4.099120 CAGAAGTCGACGATTTCTAGGTG 58.901 47.826 28.27 16.87 36.68 4.00
1662 3019 4.008330 AGAAGTCGACGATTTCTAGGTGA 58.992 43.478 27.86 0.00 36.97 4.02
1663 3020 4.641094 AGAAGTCGACGATTTCTAGGTGAT 59.359 41.667 27.86 8.08 36.97 3.06
1664 3021 4.555348 AGTCGACGATTTCTAGGTGATC 57.445 45.455 10.46 0.00 0.00 2.92
1665 3022 4.200874 AGTCGACGATTTCTAGGTGATCT 58.799 43.478 10.46 0.00 0.00 2.75
1666 3023 4.641094 AGTCGACGATTTCTAGGTGATCTT 59.359 41.667 10.46 0.00 0.00 2.40
1667 3024 4.735822 GTCGACGATTTCTAGGTGATCTTG 59.264 45.833 0.00 0.00 0.00 3.02
1668 3025 4.638865 TCGACGATTTCTAGGTGATCTTGA 59.361 41.667 0.00 0.00 0.00 3.02
1669 3026 4.973051 CGACGATTTCTAGGTGATCTTGAG 59.027 45.833 0.00 0.00 0.00 3.02
1685 3042 1.795768 TGAGTCTTGACGTGGCATTC 58.204 50.000 0.00 0.00 0.00 2.67
1686 3043 0.716108 GAGTCTTGACGTGGCATTCG 59.284 55.000 0.00 0.00 0.00 3.34
1687 3044 0.033504 AGTCTTGACGTGGCATTCGT 59.966 50.000 2.55 2.55 44.27 3.85
1729 3097 1.676635 CTCGAGGGACGTGGTGGTA 60.677 63.158 3.91 0.00 43.13 3.25
1744 3112 2.424733 GGTAGACGGGCTGAGGTCC 61.425 68.421 0.00 0.00 33.66 4.46
1954 3322 1.513158 CAACCTCTGGATCGAGCGT 59.487 57.895 0.00 0.00 0.00 5.07
1990 3358 0.944386 GCCACGGCATAAGGTACATG 59.056 55.000 2.36 0.00 41.49 3.21
2003 3371 7.518370 GCATAAGGTACATGACAAGTTTATCGG 60.518 40.741 0.00 0.00 0.00 4.18
2060 3432 3.244422 TGAGCTAACCCAACGACATCTTT 60.244 43.478 0.00 0.00 0.00 2.52
2089 3461 6.636705 ACTGTGTTAATAACTTAGCATCGGA 58.363 36.000 4.67 0.00 31.81 4.55
2092 3464 6.036735 TGTGTTAATAACTTAGCATCGGAAGC 59.963 38.462 4.67 0.00 31.81 3.86
2182 3554 1.371183 CACCTCAAACGGGCTGAGA 59.629 57.895 0.00 0.00 42.51 3.27
2294 3666 4.808895 TCATCGATCAAAATTACTGTCCCG 59.191 41.667 0.00 0.00 0.00 5.14
2295 3667 2.933906 TCGATCAAAATTACTGTCCCGC 59.066 45.455 0.00 0.00 0.00 6.13
2348 3720 9.441077 TGTTCTAAACATGTAGGAGTACTCCGC 62.441 44.444 31.53 27.26 44.81 5.54
2355 3727 1.447643 GGAGTACTCCGCATGGCAT 59.552 57.895 25.83 0.00 40.36 4.40
2356 3728 0.882042 GGAGTACTCCGCATGGCATG 60.882 60.000 25.83 22.99 40.36 4.06
2359 3731 1.202533 AGTACTCCGCATGGCATGTAC 60.203 52.381 26.94 19.84 36.90 2.90
2375 3756 7.958088 TGGCATGTACTATACAACAATAGCTA 58.042 34.615 0.00 0.00 42.76 3.32
2376 3757 8.593679 TGGCATGTACTATACAACAATAGCTAT 58.406 33.333 0.00 0.00 42.76 2.97
2447 3831 2.983592 CCCTTGACCCAACCGTGC 60.984 66.667 0.00 0.00 0.00 5.34
2454 3838 1.782028 GACCCAACCGTGCAGAACAC 61.782 60.000 0.00 0.00 46.45 3.32
2461 3845 2.562912 GTGCAGAACACCATGGCG 59.437 61.111 13.04 4.48 44.02 5.69
2463 3847 1.002257 TGCAGAACACCATGGCGAT 60.002 52.632 13.04 0.00 0.00 4.58
2481 3865 6.098679 TGGCGATATGGAAATTTGACAAAAG 58.901 36.000 4.41 0.00 0.00 2.27
2560 3944 4.326009 CCATGGCAGCAAAAACGTTTATAC 59.674 41.667 15.03 6.48 0.00 1.47
2561 3945 4.839668 TGGCAGCAAAAACGTTTATACT 57.160 36.364 15.03 8.75 0.00 2.12
2614 4002 4.637483 TGTTAATTAATCTGGCTGCTGC 57.363 40.909 7.10 7.10 38.76 5.25
2877 4265 2.047179 GTTGGTCTCGTCCTGCCC 60.047 66.667 0.00 0.00 0.00 5.36
2895 4283 1.376942 CCCAAGCTGCCTCTGACAG 60.377 63.158 0.00 0.00 38.22 3.51
2900 4288 2.935201 CAAGCTGCCTCTGACAGTATTC 59.065 50.000 1.59 0.00 37.47 1.75
2903 4291 2.354103 GCTGCCTCTGACAGTATTCACA 60.354 50.000 1.59 0.00 37.47 3.58
2905 4293 4.511527 CTGCCTCTGACAGTATTCACAAT 58.488 43.478 1.59 0.00 0.00 2.71
2906 4294 5.664457 CTGCCTCTGACAGTATTCACAATA 58.336 41.667 1.59 0.00 0.00 1.90
2920 4308 8.417106 AGTATTCACAATAGACTACACTCATGG 58.583 37.037 0.00 0.00 0.00 3.66
2950 4343 3.189495 CCACACGTGTAACATAATTGGCA 59.811 43.478 22.90 0.00 35.74 4.92
2966 4360 1.545136 TGGCACGGAATGTAACGTAGA 59.455 47.619 0.00 0.00 42.04 2.59
2974 4368 4.443394 CGGAATGTAACGTAGAATAGTGGC 59.557 45.833 0.00 0.00 0.00 5.01
2975 4369 4.443394 GGAATGTAACGTAGAATAGTGGCG 59.557 45.833 0.00 0.00 0.00 5.69
2976 4370 4.644103 ATGTAACGTAGAATAGTGGCGT 57.356 40.909 0.00 0.00 37.38 5.68
2980 4374 0.921347 CGTAGAATAGTGGCGTGTGC 59.079 55.000 0.00 0.00 41.71 4.57
3052 4454 9.724839 TTTTAGAAACGTTTCAATTTGTAGGAG 57.275 29.630 35.29 0.00 39.61 3.69
3059 4461 9.458374 AACGTTTCAATTTGTAGGAGTTTTATG 57.542 29.630 0.00 0.00 0.00 1.90
3060 4462 8.842280 ACGTTTCAATTTGTAGGAGTTTTATGA 58.158 29.630 0.00 0.00 0.00 2.15
3075 4481 7.308649 GGAGTTTTATGAAGTTCAGAAGTTCCC 60.309 40.741 22.81 12.97 39.55 3.97
3077 4483 7.229506 AGTTTTATGAAGTTCAGAAGTTCCCAG 59.770 37.037 22.81 0.00 39.55 4.45
3079 4485 3.808728 TGAAGTTCAGAAGTTCCCAGTG 58.191 45.455 22.81 0.00 39.55 3.66
3081 4487 3.477210 AGTTCAGAAGTTCCCAGTGAC 57.523 47.619 0.00 0.00 0.00 3.67
3097 4503 9.581289 TTCCCAGTGACTTGAAATCTAATTTAA 57.419 29.630 0.00 0.00 31.47 1.52
3123 4529 7.601705 TCTTCCATGAAACAAATTTCCTTCT 57.398 32.000 0.00 0.00 43.18 2.85
3130 4536 8.981647 CATGAAACAAATTTCCTTCTCGATTTT 58.018 29.630 9.20 0.00 43.18 1.82
3141 4547 7.230466 TCCTTCTCGATTTTATTAACGAAGC 57.770 36.000 0.00 0.00 34.50 3.86
3144 4550 6.583912 TCTCGATTTTATTAACGAAGCCAG 57.416 37.500 0.00 0.00 34.50 4.85
3146 4552 4.034742 TCGATTTTATTAACGAAGCCAGGC 59.965 41.667 1.84 1.84 0.00 4.85
3151 4557 6.761099 TTTATTAACGAAGCCAGGCATTTA 57.239 33.333 15.80 2.08 0.00 1.40
3154 4560 1.453155 ACGAAGCCAGGCATTTACAG 58.547 50.000 15.80 0.00 0.00 2.74
3170 4576 0.613012 ACAGCAGGCCCAAAAGATCC 60.613 55.000 0.00 0.00 0.00 3.36
3172 4578 3.068729 GCAGGCCCAAAAGATCCGC 62.069 63.158 0.00 0.00 0.00 5.54
3177 4583 1.270571 GGCCCAAAAGATCCGCAAAAA 60.271 47.619 0.00 0.00 0.00 1.94
3178 4584 2.068519 GCCCAAAAGATCCGCAAAAAG 58.931 47.619 0.00 0.00 0.00 2.27
3183 4589 5.277297 CCCAAAAGATCCGCAAAAAGAAAAC 60.277 40.000 0.00 0.00 0.00 2.43
3187 4593 1.551145 TCCGCAAAAAGAAAACGTGC 58.449 45.000 0.00 0.00 0.00 5.34
3188 4594 1.133407 TCCGCAAAAAGAAAACGTGCT 59.867 42.857 0.00 0.00 32.99 4.40
3193 4599 4.105486 GCAAAAAGAAAACGTGCTCTCTT 58.895 39.130 0.00 0.00 32.43 2.85
3195 4601 5.499176 GCAAAAAGAAAACGTGCTCTCTTTG 60.499 40.000 16.24 16.24 37.98 2.77
3206 4612 2.093606 TGCTCTCTTTGCATCAGAGGAG 60.094 50.000 18.77 15.61 38.71 3.69
3221 4627 4.833380 TCAGAGGAGGAATTAGGAATACCG 59.167 45.833 0.00 0.00 41.83 4.02
3222 4628 3.579151 AGAGGAGGAATTAGGAATACCGC 59.421 47.826 0.00 0.00 41.83 5.68
3223 4629 2.638363 AGGAGGAATTAGGAATACCGCC 59.362 50.000 0.00 0.00 41.83 6.13
3224 4630 2.290134 GGAGGAATTAGGAATACCGCCC 60.290 54.545 0.00 0.00 41.83 6.13
3225 4631 1.346722 AGGAATTAGGAATACCGCCCG 59.653 52.381 0.00 0.00 41.83 6.13
3226 4632 1.154197 GAATTAGGAATACCGCCCGC 58.846 55.000 0.00 0.00 41.83 6.13
3227 4633 0.470766 AATTAGGAATACCGCCCGCA 59.529 50.000 0.00 0.00 41.83 5.69
3228 4634 0.034896 ATTAGGAATACCGCCCGCAG 59.965 55.000 0.00 0.00 41.83 5.18
3229 4635 2.035237 TTAGGAATACCGCCCGCAGG 62.035 60.000 0.00 0.00 45.33 4.85
3280 4686 1.218854 GTGCCCATCCATTTGTGCC 59.781 57.895 0.00 0.00 0.00 5.01
3285 4691 2.170187 GCCCATCCATTTGTGCCATAAA 59.830 45.455 0.00 0.00 0.00 1.40
3293 4699 4.504689 CCATTTGTGCCATAAACCACCTTT 60.505 41.667 0.00 0.00 0.00 3.11
3294 4700 3.742433 TTGTGCCATAAACCACCTTTG 57.258 42.857 0.00 0.00 0.00 2.77
3295 4701 2.672098 TGTGCCATAAACCACCTTTGT 58.328 42.857 0.00 0.00 0.00 2.83
3296 4702 3.034635 TGTGCCATAAACCACCTTTGTT 58.965 40.909 0.00 0.00 0.00 2.83
3317 4723 4.827036 TGCTACCTCCCCTAATCTTCTA 57.173 45.455 0.00 0.00 0.00 2.10
3318 4724 4.742012 TGCTACCTCCCCTAATCTTCTAG 58.258 47.826 0.00 0.00 0.00 2.43
3329 4735 7.568738 TCCCCTAATCTTCTAGATCATTGTTGA 59.431 37.037 0.00 0.00 32.89 3.18
3330 4736 8.213679 CCCCTAATCTTCTAGATCATTGTTGAA 58.786 37.037 0.00 0.00 32.89 2.69
3340 4746 8.156820 TCTAGATCATTGTTGAAGAACCTTTCA 58.843 33.333 0.00 0.00 34.96 2.69
3343 4749 6.331369 TCATTGTTGAAGAACCTTTCATCC 57.669 37.500 0.00 0.00 36.97 3.51
3344 4750 5.832595 TCATTGTTGAAGAACCTTTCATCCA 59.167 36.000 0.00 0.00 36.97 3.41
3349 4755 6.831353 TGTTGAAGAACCTTTCATCCACTTTA 59.169 34.615 0.00 0.00 36.97 1.85
3350 4756 7.013274 TGTTGAAGAACCTTTCATCCACTTTAG 59.987 37.037 0.00 0.00 36.97 1.85
3351 4757 6.003950 TGAAGAACCTTTCATCCACTTTAGG 58.996 40.000 0.00 0.00 32.39 2.69
3352 4758 4.923415 AGAACCTTTCATCCACTTTAGGG 58.077 43.478 0.00 0.00 0.00 3.53
3353 4759 3.087370 ACCTTTCATCCACTTTAGGGC 57.913 47.619 0.00 0.00 0.00 5.19
3354 4760 2.378547 ACCTTTCATCCACTTTAGGGCA 59.621 45.455 0.00 0.00 0.00 5.36
3355 4761 3.011708 ACCTTTCATCCACTTTAGGGCAT 59.988 43.478 0.00 0.00 0.00 4.40
3356 4762 3.633986 CCTTTCATCCACTTTAGGGCATC 59.366 47.826 0.00 0.00 0.00 3.91
3357 4763 4.530875 CTTTCATCCACTTTAGGGCATCT 58.469 43.478 0.00 0.00 0.00 2.90
3358 4764 3.845781 TCATCCACTTTAGGGCATCTC 57.154 47.619 0.00 0.00 0.00 2.75
3359 4765 2.439507 TCATCCACTTTAGGGCATCTCC 59.560 50.000 0.00 0.00 0.00 3.71
3360 4766 1.965414 TCCACTTTAGGGCATCTCCA 58.035 50.000 0.00 0.00 36.21 3.86
3361 4767 2.274542 TCCACTTTAGGGCATCTCCAA 58.725 47.619 0.00 0.00 36.21 3.53
3362 4768 2.026262 TCCACTTTAGGGCATCTCCAAC 60.026 50.000 0.00 0.00 36.21 3.77
3363 4769 2.009774 CACTTTAGGGCATCTCCAACG 58.990 52.381 0.00 0.00 36.21 4.10
3364 4770 1.017387 CTTTAGGGCATCTCCAACGC 58.983 55.000 0.00 0.00 36.21 4.84
3365 4771 0.393808 TTTAGGGCATCTCCAACGCC 60.394 55.000 0.00 0.00 45.47 5.68
3368 4774 3.195698 GGCATCTCCAACGCCGTC 61.196 66.667 0.00 0.00 35.79 4.79
3369 4775 3.195698 GCATCTCCAACGCCGTCC 61.196 66.667 0.00 0.00 0.00 4.79
3370 4776 2.511600 CATCTCCAACGCCGTCCC 60.512 66.667 0.00 0.00 0.00 4.46
3371 4777 2.683933 ATCTCCAACGCCGTCCCT 60.684 61.111 0.00 0.00 0.00 4.20
3372 4778 2.722201 ATCTCCAACGCCGTCCCTC 61.722 63.158 0.00 0.00 0.00 4.30
3373 4779 3.691342 CTCCAACGCCGTCCCTCA 61.691 66.667 0.00 0.00 0.00 3.86
3374 4780 3.234630 CTCCAACGCCGTCCCTCAA 62.235 63.158 0.00 0.00 0.00 3.02
3375 4781 2.281208 CCAACGCCGTCCCTCAAA 60.281 61.111 0.00 0.00 0.00 2.69
3376 4782 2.613506 CCAACGCCGTCCCTCAAAC 61.614 63.158 0.00 0.00 0.00 2.93
3377 4783 2.281276 AACGCCGTCCCTCAAACC 60.281 61.111 0.00 0.00 0.00 3.27
3378 4784 3.109592 AACGCCGTCCCTCAAACCA 62.110 57.895 0.00 0.00 0.00 3.67
3379 4785 3.047877 CGCCGTCCCTCAAACCAC 61.048 66.667 0.00 0.00 0.00 4.16
3380 4786 2.671963 GCCGTCCCTCAAACCACC 60.672 66.667 0.00 0.00 0.00 4.61
3381 4787 3.157680 CCGTCCCTCAAACCACCT 58.842 61.111 0.00 0.00 0.00 4.00
3382 4788 1.302511 CCGTCCCTCAAACCACCTG 60.303 63.158 0.00 0.00 0.00 4.00
3383 4789 1.966451 CGTCCCTCAAACCACCTGC 60.966 63.158 0.00 0.00 0.00 4.85
3384 4790 1.150536 GTCCCTCAAACCACCTGCA 59.849 57.895 0.00 0.00 0.00 4.41
3385 4791 0.251341 GTCCCTCAAACCACCTGCAT 60.251 55.000 0.00 0.00 0.00 3.96
3386 4792 0.251297 TCCCTCAAACCACCTGCATG 60.251 55.000 0.00 0.00 0.00 4.06
3387 4793 0.251297 CCCTCAAACCACCTGCATGA 60.251 55.000 0.00 0.00 0.00 3.07
3388 4794 1.619654 CCTCAAACCACCTGCATGAA 58.380 50.000 0.00 0.00 0.00 2.57
3389 4795 2.173519 CCTCAAACCACCTGCATGAAT 58.826 47.619 0.00 0.00 0.00 2.57
3390 4796 2.094390 CCTCAAACCACCTGCATGAATG 60.094 50.000 0.00 0.00 0.00 2.67
3410 4816 3.005823 CGTACGCGGGGTTATATCG 57.994 57.895 12.47 0.00 0.00 2.92
3411 4817 0.516877 CGTACGCGGGGTTATATCGA 59.483 55.000 12.47 0.00 0.00 3.59
3412 4818 1.131126 CGTACGCGGGGTTATATCGAT 59.869 52.381 12.47 2.16 0.00 3.59
3413 4819 2.789092 CGTACGCGGGGTTATATCGATC 60.789 54.545 12.47 0.00 0.00 3.69
3414 4820 0.529378 ACGCGGGGTTATATCGATCC 59.471 55.000 12.47 0.00 0.00 3.36
3415 4821 0.815734 CGCGGGGTTATATCGATCCT 59.184 55.000 0.00 0.00 0.00 3.24
3416 4822 1.202268 CGCGGGGTTATATCGATCCTC 60.202 57.143 0.00 0.00 0.00 3.71
3417 4823 2.100989 GCGGGGTTATATCGATCCTCT 58.899 52.381 0.00 0.00 0.00 3.69
3418 4824 2.159226 GCGGGGTTATATCGATCCTCTG 60.159 54.545 0.00 0.00 0.00 3.35
3419 4825 3.353557 CGGGGTTATATCGATCCTCTGA 58.646 50.000 0.00 0.00 0.00 3.27
3420 4826 3.378742 CGGGGTTATATCGATCCTCTGAG 59.621 52.174 0.00 0.00 0.00 3.35
3421 4827 4.345854 GGGGTTATATCGATCCTCTGAGT 58.654 47.826 0.00 0.00 0.00 3.41
3422 4828 5.507637 GGGGTTATATCGATCCTCTGAGTA 58.492 45.833 0.00 0.00 0.00 2.59
3423 4829 6.130569 GGGGTTATATCGATCCTCTGAGTAT 58.869 44.000 0.00 0.00 0.00 2.12
3424 4830 6.039941 GGGGTTATATCGATCCTCTGAGTATG 59.960 46.154 0.00 0.00 0.00 2.39
3425 4831 6.039941 GGGTTATATCGATCCTCTGAGTATGG 59.960 46.154 0.00 0.00 0.00 2.74
3426 4832 6.829298 GGTTATATCGATCCTCTGAGTATGGA 59.171 42.308 0.00 0.57 0.00 3.41
3427 4833 7.201750 GGTTATATCGATCCTCTGAGTATGGAC 60.202 44.444 0.00 0.00 32.16 4.02
3428 4834 3.577805 TCGATCCTCTGAGTATGGACA 57.422 47.619 3.66 0.00 32.16 4.02
3429 4835 3.215151 TCGATCCTCTGAGTATGGACAC 58.785 50.000 3.66 0.00 32.16 3.67
3430 4836 2.952310 CGATCCTCTGAGTATGGACACA 59.048 50.000 3.66 0.00 32.16 3.72
3431 4837 3.243234 CGATCCTCTGAGTATGGACACAC 60.243 52.174 3.66 0.00 32.16 3.82
3432 4838 3.458044 TCCTCTGAGTATGGACACACT 57.542 47.619 3.66 0.00 0.00 3.55
3433 4839 3.779444 TCCTCTGAGTATGGACACACTT 58.221 45.455 3.66 0.00 0.00 3.16
3434 4840 4.160329 TCCTCTGAGTATGGACACACTTT 58.840 43.478 3.66 0.00 0.00 2.66
3435 4841 4.593206 TCCTCTGAGTATGGACACACTTTT 59.407 41.667 3.66 0.00 0.00 2.27
3436 4842 5.071788 TCCTCTGAGTATGGACACACTTTTT 59.928 40.000 3.66 0.00 0.00 1.94
3437 4843 5.409826 CCTCTGAGTATGGACACACTTTTTC 59.590 44.000 3.66 0.00 0.00 2.29
3438 4844 5.305585 TCTGAGTATGGACACACTTTTTCC 58.694 41.667 0.00 0.00 0.00 3.13
3439 4845 4.394729 TGAGTATGGACACACTTTTTCCC 58.605 43.478 0.00 0.00 0.00 3.97
3440 4846 3.408634 AGTATGGACACACTTTTTCCCG 58.591 45.455 0.00 0.00 0.00 5.14
3441 4847 0.958822 ATGGACACACTTTTTCCCGC 59.041 50.000 0.00 0.00 0.00 6.13
3442 4848 0.394488 TGGACACACTTTTTCCCGCA 60.394 50.000 0.00 0.00 0.00 5.69
3443 4849 0.741915 GGACACACTTTTTCCCGCAA 59.258 50.000 0.00 0.00 0.00 4.85
3444 4850 1.135333 GGACACACTTTTTCCCGCAAA 59.865 47.619 0.00 0.00 0.00 3.68
3445 4851 2.417515 GGACACACTTTTTCCCGCAAAA 60.418 45.455 0.00 0.00 31.73 2.44
3813 5219 3.642141 TGGGCCTATTTTCTTCCAATCC 58.358 45.455 4.53 0.00 0.00 3.01
3814 5220 3.012274 TGGGCCTATTTTCTTCCAATCCA 59.988 43.478 4.53 0.00 0.00 3.41
3815 5221 3.384789 GGGCCTATTTTCTTCCAATCCAC 59.615 47.826 0.84 0.00 0.00 4.02
3816 5222 3.384789 GGCCTATTTTCTTCCAATCCACC 59.615 47.826 0.00 0.00 0.00 4.61
3817 5223 3.384789 GCCTATTTTCTTCCAATCCACCC 59.615 47.826 0.00 0.00 0.00 4.61
3818 5224 3.960755 CCTATTTTCTTCCAATCCACCCC 59.039 47.826 0.00 0.00 0.00 4.95
3819 5225 3.852858 ATTTTCTTCCAATCCACCCCT 57.147 42.857 0.00 0.00 0.00 4.79
3820 5226 3.628832 TTTTCTTCCAATCCACCCCTT 57.371 42.857 0.00 0.00 0.00 3.95
3821 5227 2.899303 TTCTTCCAATCCACCCCTTC 57.101 50.000 0.00 0.00 0.00 3.46
3822 5228 2.059756 TCTTCCAATCCACCCCTTCT 57.940 50.000 0.00 0.00 0.00 2.85
3823 5229 1.916181 TCTTCCAATCCACCCCTTCTC 59.084 52.381 0.00 0.00 0.00 2.87
3824 5230 1.918957 CTTCCAATCCACCCCTTCTCT 59.081 52.381 0.00 0.00 0.00 3.10
3825 5231 1.584724 TCCAATCCACCCCTTCTCTC 58.415 55.000 0.00 0.00 0.00 3.20
3826 5232 0.548510 CCAATCCACCCCTTCTCTCC 59.451 60.000 0.00 0.00 0.00 3.71
3827 5233 0.548510 CAATCCACCCCTTCTCTCCC 59.451 60.000 0.00 0.00 0.00 4.30
3828 5234 0.624795 AATCCACCCCTTCTCTCCCC 60.625 60.000 0.00 0.00 0.00 4.81
3829 5235 1.541168 ATCCACCCCTTCTCTCCCCT 61.541 60.000 0.00 0.00 0.00 4.79
3830 5236 1.229984 CCACCCCTTCTCTCCCCTT 60.230 63.158 0.00 0.00 0.00 3.95
3831 5237 1.566298 CCACCCCTTCTCTCCCCTTG 61.566 65.000 0.00 0.00 0.00 3.61
3832 5238 1.925972 ACCCCTTCTCTCCCCTTGC 60.926 63.158 0.00 0.00 0.00 4.01
3833 5239 1.617839 CCCCTTCTCTCCCCTTGCT 60.618 63.158 0.00 0.00 0.00 3.91
3834 5240 1.210885 CCCCTTCTCTCCCCTTGCTT 61.211 60.000 0.00 0.00 0.00 3.91
3835 5241 0.701147 CCCTTCTCTCCCCTTGCTTT 59.299 55.000 0.00 0.00 0.00 3.51
3836 5242 1.615384 CCCTTCTCTCCCCTTGCTTTG 60.615 57.143 0.00 0.00 0.00 2.77
3837 5243 1.172175 CTTCTCTCCCCTTGCTTTGC 58.828 55.000 0.00 0.00 0.00 3.68
3838 5244 0.478072 TTCTCTCCCCTTGCTTTGCA 59.522 50.000 0.00 0.00 36.47 4.08
3839 5245 0.700564 TCTCTCCCCTTGCTTTGCAT 59.299 50.000 0.00 0.00 38.76 3.96
3840 5246 1.101331 CTCTCCCCTTGCTTTGCATC 58.899 55.000 0.00 0.00 38.76 3.91
3841 5247 0.323725 TCTCCCCTTGCTTTGCATCC 60.324 55.000 0.00 0.00 38.76 3.51
3842 5248 1.660560 CTCCCCTTGCTTTGCATCCG 61.661 60.000 0.00 0.00 38.76 4.18
3843 5249 2.182537 CCCTTGCTTTGCATCCGC 59.817 61.111 0.00 0.00 38.76 5.54
3852 5258 3.785859 TGCATCCGCACCCTCCTC 61.786 66.667 0.00 0.00 45.36 3.71
3853 5259 4.554036 GCATCCGCACCCTCCTCC 62.554 72.222 0.00 0.00 38.36 4.30
3854 5260 2.765807 CATCCGCACCCTCCTCCT 60.766 66.667 0.00 0.00 0.00 3.69
3855 5261 2.444895 ATCCGCACCCTCCTCCTC 60.445 66.667 0.00 0.00 0.00 3.71
3856 5262 4.779733 TCCGCACCCTCCTCCTCC 62.780 72.222 0.00 0.00 0.00 4.30
3860 5266 2.279073 CACCCTCCTCCTCCGCTA 59.721 66.667 0.00 0.00 0.00 4.26
3861 5267 2.128507 CACCCTCCTCCTCCGCTAC 61.129 68.421 0.00 0.00 0.00 3.58
3862 5268 2.522193 CCCTCCTCCTCCGCTACC 60.522 72.222 0.00 0.00 0.00 3.18
3863 5269 2.907917 CCTCCTCCTCCGCTACCG 60.908 72.222 0.00 0.00 0.00 4.02
3864 5270 3.597728 CTCCTCCTCCGCTACCGC 61.598 72.222 0.00 0.00 0.00 5.68
3867 5273 4.208686 CTCCTCCGCTACCGCCAC 62.209 72.222 0.00 0.00 0.00 5.01
3868 5274 4.753662 TCCTCCGCTACCGCCACT 62.754 66.667 0.00 0.00 0.00 4.00
3869 5275 4.208686 CCTCCGCTACCGCCACTC 62.209 72.222 0.00 0.00 0.00 3.51
3870 5276 3.141488 CTCCGCTACCGCCACTCT 61.141 66.667 0.00 0.00 0.00 3.24
3871 5277 1.822613 CTCCGCTACCGCCACTCTA 60.823 63.158 0.00 0.00 0.00 2.43
3872 5278 2.061182 CTCCGCTACCGCCACTCTAC 62.061 65.000 0.00 0.00 0.00 2.59
3873 5279 2.412112 CGCTACCGCCACTCTACC 59.588 66.667 0.00 0.00 0.00 3.18
3874 5280 2.119655 CGCTACCGCCACTCTACCT 61.120 63.158 0.00 0.00 0.00 3.08
3875 5281 1.734748 GCTACCGCCACTCTACCTC 59.265 63.158 0.00 0.00 0.00 3.85
3876 5282 0.752376 GCTACCGCCACTCTACCTCT 60.752 60.000 0.00 0.00 0.00 3.69
3877 5283 1.310904 CTACCGCCACTCTACCTCTC 58.689 60.000 0.00 0.00 0.00 3.20
3878 5284 0.106819 TACCGCCACTCTACCTCTCC 60.107 60.000 0.00 0.00 0.00 3.71
3879 5285 2.482333 CCGCCACTCTACCTCTCCG 61.482 68.421 0.00 0.00 0.00 4.63
3880 5286 2.809010 GCCACTCTACCTCTCCGC 59.191 66.667 0.00 0.00 0.00 5.54
3881 5287 2.787567 GCCACTCTACCTCTCCGCC 61.788 68.421 0.00 0.00 0.00 6.13
3882 5288 2.128507 CCACTCTACCTCTCCGCCC 61.129 68.421 0.00 0.00 0.00 6.13
3883 5289 1.379977 CACTCTACCTCTCCGCCCA 60.380 63.158 0.00 0.00 0.00 5.36
3884 5290 0.970937 CACTCTACCTCTCCGCCCAA 60.971 60.000 0.00 0.00 0.00 4.12
3885 5291 0.971447 ACTCTACCTCTCCGCCCAAC 60.971 60.000 0.00 0.00 0.00 3.77
3886 5292 2.005960 CTCTACCTCTCCGCCCAACG 62.006 65.000 0.00 0.00 43.15 4.10
3887 5293 3.718210 CTACCTCTCCGCCCAACGC 62.718 68.421 0.00 0.00 41.76 4.84
3890 5296 4.680237 CTCTCCGCCCAACGCACA 62.680 66.667 0.00 0.00 41.76 4.57
3891 5297 3.958147 CTCTCCGCCCAACGCACAT 62.958 63.158 0.00 0.00 41.76 3.21
3892 5298 3.803082 CTCCGCCCAACGCACATG 61.803 66.667 0.00 0.00 41.76 3.21
3895 5301 4.118995 CGCCCAACGCACATGCAT 62.119 61.111 4.49 0.00 42.21 3.96
3896 5302 2.262292 GCCCAACGCACATGCATT 59.738 55.556 0.00 0.00 42.21 3.56
3897 5303 2.095847 GCCCAACGCACATGCATTG 61.096 57.895 5.71 5.71 43.06 2.82
3898 5304 2.095847 CCCAACGCACATGCATTGC 61.096 57.895 18.26 18.26 42.21 3.56
3899 5305 2.095847 CCAACGCACATGCATTGCC 61.096 57.895 20.70 9.26 42.21 4.52
3900 5306 2.126385 AACGCACATGCATTGCCG 60.126 55.556 20.70 18.14 42.21 5.69
3901 5307 3.629883 AACGCACATGCATTGCCGG 62.630 57.895 20.70 0.00 42.21 6.13
3902 5308 3.813143 CGCACATGCATTGCCGGA 61.813 61.111 20.70 0.00 42.21 5.14
3903 5309 2.202650 GCACATGCATTGCCGGAC 60.203 61.111 5.05 0.00 41.59 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 84 7.147828 CCATAGACTTGTGATCTTTGTAGGAGA 60.148 40.741 0.00 0.00 0.00 3.71
123 125 3.181493 GCGACCTCATGCATTCTTTGAAT 60.181 43.478 0.00 0.00 0.00 2.57
188 190 5.423610 ACAAATGGACTAGTCATCTAGCAGT 59.576 40.000 23.91 8.28 45.32 4.40
259 1486 2.768492 CCAGAAAGCGGCCATGAGC 61.768 63.158 2.24 0.00 42.60 4.26
261 1488 1.675310 CACCAGAAAGCGGCCATGA 60.675 57.895 2.24 0.00 0.00 3.07
263 1490 2.361610 CCACCAGAAAGCGGCCAT 60.362 61.111 2.24 0.00 0.00 4.40
264 1491 3.842925 GACCACCAGAAAGCGGCCA 62.843 63.158 2.24 0.00 0.00 5.36
265 1492 3.056328 GACCACCAGAAAGCGGCC 61.056 66.667 0.00 0.00 0.00 6.13
266 1493 1.452145 TTTGACCACCAGAAAGCGGC 61.452 55.000 0.00 0.00 0.00 6.53
267 1494 1.001378 CTTTTGACCACCAGAAAGCGG 60.001 52.381 0.00 0.00 0.00 5.52
268 1495 1.946768 TCTTTTGACCACCAGAAAGCG 59.053 47.619 0.00 0.00 0.00 4.68
269 1496 4.202151 ACAATCTTTTGACCACCAGAAAGC 60.202 41.667 0.00 0.00 36.64 3.51
270 1497 5.520376 ACAATCTTTTGACCACCAGAAAG 57.480 39.130 0.00 0.00 36.64 2.62
271 1498 5.930837 AACAATCTTTTGACCACCAGAAA 57.069 34.783 0.00 0.00 36.64 2.52
318 1547 6.620678 GTCTTCTATGGTTATGCTGCAAAAA 58.379 36.000 6.36 1.06 0.00 1.94
319 1548 5.163764 CGTCTTCTATGGTTATGCTGCAAAA 60.164 40.000 6.36 0.00 0.00 2.44
320 1549 4.332543 CGTCTTCTATGGTTATGCTGCAAA 59.667 41.667 6.36 0.00 0.00 3.68
321 1550 3.871006 CGTCTTCTATGGTTATGCTGCAA 59.129 43.478 6.36 0.00 0.00 4.08
322 1551 3.132111 TCGTCTTCTATGGTTATGCTGCA 59.868 43.478 4.13 4.13 0.00 4.41
333 1562 6.541086 ACTACAGTTTACGTCGTCTTCTATG 58.459 40.000 0.00 0.00 0.00 2.23
334 1563 6.734104 ACTACAGTTTACGTCGTCTTCTAT 57.266 37.500 0.00 0.00 0.00 1.98
418 1664 1.602323 TTGCTAGTTGGGTTGGCCG 60.602 57.895 0.00 0.00 34.97 6.13
484 1730 0.652592 CGCGACCTGATCAACAATCC 59.347 55.000 0.00 0.00 33.01 3.01
486 1732 0.744414 CCCGCGACCTGATCAACAAT 60.744 55.000 8.23 0.00 0.00 2.71
517 1763 2.608261 CGAGTTCGAAACTTGAGCTCCT 60.608 50.000 12.15 0.00 44.20 3.69
589 1840 8.501904 TCCTTCAATCCATATTAATTGACCTGA 58.498 33.333 8.40 4.59 40.58 3.86
606 1857 9.573133 CATTTTATGTTGGTACTTCCTTCAATC 57.427 33.333 0.00 0.00 37.07 2.67
659 1994 2.508663 GAGGCCGGTTGTACGCTC 60.509 66.667 1.90 0.00 0.00 5.03
724 2062 0.871722 CGTTGATGGTTTTGCGGAGA 59.128 50.000 0.00 0.00 0.00 3.71
729 2067 5.457140 TCTGTTAATCGTTGATGGTTTTGC 58.543 37.500 0.00 0.00 0.00 3.68
846 2184 5.440610 GGAGACTATGAAATTCCCATGTGT 58.559 41.667 0.00 3.56 0.00 3.72
904 2242 3.721021 AGCAGTGTACCTACCTACCATT 58.279 45.455 0.00 0.00 0.00 3.16
915 2253 2.472695 TGGTGATCAAGCAGTGTACC 57.527 50.000 0.00 0.00 0.00 3.34
920 2258 1.830279 CCACATGGTGATCAAGCAGT 58.170 50.000 0.00 0.00 40.26 4.40
958 2306 9.343539 GGTGAATCAGTAATTTAGAGCCTTAAT 57.656 33.333 0.00 0.00 0.00 1.40
959 2307 7.773690 GGGTGAATCAGTAATTTAGAGCCTTAA 59.226 37.037 0.00 0.00 0.00 1.85
963 2311 4.511826 CGGGTGAATCAGTAATTTAGAGCC 59.488 45.833 0.00 0.00 0.00 4.70
964 2312 4.024809 GCGGGTGAATCAGTAATTTAGAGC 60.025 45.833 0.00 0.00 0.00 4.09
965 2313 5.360591 AGCGGGTGAATCAGTAATTTAGAG 58.639 41.667 0.00 0.00 0.00 2.43
966 2314 5.353394 AGCGGGTGAATCAGTAATTTAGA 57.647 39.130 0.00 0.00 0.00 2.10
967 2315 5.584649 TCAAGCGGGTGAATCAGTAATTTAG 59.415 40.000 0.00 0.00 0.00 1.85
1174 2530 0.889186 CCGTTGTTGGGGAGGAACAG 60.889 60.000 0.00 0.00 34.85 3.16
1226 2582 4.360964 CGTCGTACACCGCCCCAA 62.361 66.667 0.00 0.00 36.19 4.12
1353 2709 4.047125 ACCAGGAACATGCCCGGG 62.047 66.667 19.09 19.09 43.46 5.73
1621 2977 7.465647 CGACTTCTGTGAGACGTGTATACTTAT 60.466 40.741 4.17 0.00 31.81 1.73
1622 2978 6.183360 CGACTTCTGTGAGACGTGTATACTTA 60.183 42.308 4.17 0.00 31.81 2.24
1623 2979 5.390673 CGACTTCTGTGAGACGTGTATACTT 60.391 44.000 4.17 0.00 31.81 2.24
1624 2980 4.093115 CGACTTCTGTGAGACGTGTATACT 59.907 45.833 4.17 0.00 31.81 2.12
1625 2981 4.092529 TCGACTTCTGTGAGACGTGTATAC 59.907 45.833 0.00 0.00 36.47 1.47
1626 2982 4.092529 GTCGACTTCTGTGAGACGTGTATA 59.907 45.833 8.70 0.00 36.47 1.47
1630 2987 1.676057 GTCGACTTCTGTGAGACGTG 58.324 55.000 8.70 0.00 36.47 4.49
1632 2989 0.511653 TCGTCGACTTCTGTGAGACG 59.488 55.000 14.70 9.62 46.04 4.18
1638 2995 3.757493 ACCTAGAAATCGTCGACTTCTGT 59.243 43.478 24.88 14.46 31.91 3.41
1643 3000 4.200874 AGATCACCTAGAAATCGTCGACT 58.799 43.478 14.70 0.00 0.00 4.18
1644 3001 4.555348 AGATCACCTAGAAATCGTCGAC 57.445 45.455 5.18 5.18 0.00 4.20
1659 3016 2.989840 CCACGTCAAGACTCAAGATCAC 59.010 50.000 0.00 0.00 0.00 3.06
1661 3018 1.996191 GCCACGTCAAGACTCAAGATC 59.004 52.381 0.00 0.00 0.00 2.75
1662 3019 1.344438 TGCCACGTCAAGACTCAAGAT 59.656 47.619 0.00 0.00 0.00 2.40
1663 3020 0.750249 TGCCACGTCAAGACTCAAGA 59.250 50.000 0.00 0.00 0.00 3.02
1664 3021 1.800805 ATGCCACGTCAAGACTCAAG 58.199 50.000 0.00 0.00 0.00 3.02
1665 3022 2.143122 GAATGCCACGTCAAGACTCAA 58.857 47.619 0.00 0.00 0.00 3.02
1666 3023 1.795768 GAATGCCACGTCAAGACTCA 58.204 50.000 0.00 0.00 0.00 3.41
1667 3024 0.716108 CGAATGCCACGTCAAGACTC 59.284 55.000 0.00 0.00 0.00 3.36
1668 3025 0.033504 ACGAATGCCACGTCAAGACT 59.966 50.000 0.00 0.00 39.87 3.24
1669 3026 0.163788 CACGAATGCCACGTCAAGAC 59.836 55.000 0.00 0.00 42.07 3.01
1685 3042 3.756677 CGTCAGCGACTGCACACG 61.757 66.667 7.03 3.80 46.23 4.49
1686 3043 2.354656 TCGTCAGCGACTGCACAC 60.355 61.111 7.03 0.00 46.23 3.82
1729 3097 2.039624 ATGGACCTCAGCCCGTCT 59.960 61.111 0.00 0.00 0.00 4.18
1990 3358 3.374058 CCCATCACACCGATAAACTTGTC 59.626 47.826 0.00 0.00 31.20 3.18
2003 3371 1.156736 CAAACTCCGACCCATCACAC 58.843 55.000 0.00 0.00 0.00 3.82
2063 3435 8.252417 TCCGATGCTAAGTTATTAACACAGTAA 58.748 33.333 9.15 0.37 0.00 2.24
2064 3436 7.774134 TCCGATGCTAAGTTATTAACACAGTA 58.226 34.615 9.15 5.31 0.00 2.74
2065 3437 6.636705 TCCGATGCTAAGTTATTAACACAGT 58.363 36.000 9.15 0.00 0.00 3.55
2066 3438 7.534085 TTCCGATGCTAAGTTATTAACACAG 57.466 36.000 9.15 6.28 0.00 3.66
2067 3439 6.036735 GCTTCCGATGCTAAGTTATTAACACA 59.963 38.462 9.15 2.54 0.00 3.72
2068 3440 6.258068 AGCTTCCGATGCTAAGTTATTAACAC 59.742 38.462 6.99 0.00 39.21 3.32
2069 3441 6.346096 AGCTTCCGATGCTAAGTTATTAACA 58.654 36.000 6.99 0.00 39.21 2.41
2070 3442 6.846325 AGCTTCCGATGCTAAGTTATTAAC 57.154 37.500 6.99 0.00 39.21 2.01
2072 3444 5.758296 CCAAGCTTCCGATGCTAAGTTATTA 59.242 40.000 9.07 0.00 40.22 0.98
2073 3445 4.576463 CCAAGCTTCCGATGCTAAGTTATT 59.424 41.667 9.07 0.00 40.22 1.40
2074 3446 4.130118 CCAAGCTTCCGATGCTAAGTTAT 58.870 43.478 9.07 0.00 40.22 1.89
2089 3461 1.228956 TTGCTGATGCCCCAAGCTT 60.229 52.632 0.00 0.00 44.23 3.74
2092 3464 2.056223 CCCTTGCTGATGCCCCAAG 61.056 63.158 0.00 0.00 38.71 3.61
2182 3554 0.786435 AGCTCCCCCAGGTTTTGATT 59.214 50.000 0.00 0.00 0.00 2.57
2294 3666 1.950630 CGCTGCACCCAACTTTTGC 60.951 57.895 0.00 0.00 36.76 3.68
2295 3667 0.594796 GTCGCTGCACCCAACTTTTG 60.595 55.000 0.00 0.00 0.00 2.44
2348 3720 7.388776 AGCTATTGTTGTATAGTACATGCCATG 59.611 37.037 2.40 2.40 38.68 3.66
2415 3798 4.892291 GGGCCTCCCCCGTCCATA 62.892 72.222 0.84 0.00 45.91 2.74
2433 3817 1.098712 GTTCTGCACGGTTGGGTCAA 61.099 55.000 0.00 0.00 0.00 3.18
2447 3831 1.875514 CCATATCGCCATGGTGTTCTG 59.124 52.381 24.28 17.64 40.62 3.02
2454 3838 4.037803 TGTCAAATTTCCATATCGCCATGG 59.962 41.667 7.63 7.63 45.93 3.66
2461 3845 8.964420 TCGTTCTTTTGTCAAATTTCCATATC 57.036 30.769 0.00 0.00 0.00 1.63
2463 3847 8.572185 TCATCGTTCTTTTGTCAAATTTCCATA 58.428 29.630 0.00 0.00 0.00 2.74
2481 3865 4.128554 TCTTGAGCGTTTTTCATCGTTC 57.871 40.909 0.00 0.00 37.69 3.95
2604 3992 1.066573 ACTACTAACAGCAGCAGCCAG 60.067 52.381 0.00 0.00 43.56 4.85
2635 4023 3.139850 CAAATCAATGTTGGCAGCCAAA 58.860 40.909 29.04 18.35 45.73 3.28
2637 4025 1.002201 CCAAATCAATGTTGGCAGCCA 59.998 47.619 11.22 11.22 39.21 4.75
2856 4244 1.890894 CAGGACGAGACCAACCGAT 59.109 57.895 0.00 0.00 0.00 4.18
2877 4265 1.376942 CTGTCAGAGGCAGCTTGGG 60.377 63.158 0.00 0.00 0.00 4.12
2895 4283 7.169982 GCCATGAGTGTAGTCTATTGTGAATAC 59.830 40.741 0.00 0.00 37.82 1.89
2900 4288 3.798878 CGCCATGAGTGTAGTCTATTGTG 59.201 47.826 0.00 0.00 0.00 3.33
2903 4291 4.207955 TCTCGCCATGAGTGTAGTCTATT 58.792 43.478 0.00 0.00 45.46 1.73
2905 4293 3.277142 TCTCGCCATGAGTGTAGTCTA 57.723 47.619 0.00 0.00 45.46 2.59
2906 4294 2.130272 TCTCGCCATGAGTGTAGTCT 57.870 50.000 0.00 0.00 45.46 3.24
2920 4308 1.011968 TTACACGTGTGGCATCTCGC 61.012 55.000 30.83 0.00 41.28 5.03
2950 4343 5.585390 CCACTATTCTACGTTACATTCCGT 58.415 41.667 0.00 0.00 40.87 4.69
2966 4360 2.303163 TTATCGCACACGCCACTATT 57.697 45.000 0.00 0.00 39.84 1.73
2974 4368 9.735646 AAATATAATCGTAAATTATCGCACACG 57.264 29.630 0.00 0.00 42.01 4.49
3048 4450 7.445707 GGAACTTCTGAACTTCATAAAACTCCT 59.554 37.037 10.54 0.00 0.00 3.69
3052 4454 7.013369 ACTGGGAACTTCTGAACTTCATAAAAC 59.987 37.037 10.54 0.00 0.00 2.43
3059 4461 3.810386 GTCACTGGGAACTTCTGAACTTC 59.190 47.826 2.35 2.35 0.00 3.01
3060 4462 3.456277 AGTCACTGGGAACTTCTGAACTT 59.544 43.478 0.00 0.00 0.00 2.66
3063 4469 3.454447 TCAAGTCACTGGGAACTTCTGAA 59.546 43.478 0.00 0.00 0.00 3.02
3097 4503 8.654094 AGAAGGAAATTTGTTTCATGGAAGAAT 58.346 29.630 0.00 0.00 32.77 2.40
3100 4506 6.583806 CGAGAAGGAAATTTGTTTCATGGAAG 59.416 38.462 0.00 0.00 32.77 3.46
3102 4508 5.767665 TCGAGAAGGAAATTTGTTTCATGGA 59.232 36.000 0.00 0.00 32.77 3.41
3104 4510 8.524870 AAATCGAGAAGGAAATTTGTTTCATG 57.475 30.769 0.00 0.00 32.77 3.07
3115 4521 8.173130 GCTTCGTTAATAAAATCGAGAAGGAAA 58.827 33.333 0.00 0.00 35.66 3.13
3117 4523 6.257193 GGCTTCGTTAATAAAATCGAGAAGGA 59.743 38.462 0.00 0.00 35.66 3.36
3123 4529 4.034742 GCCTGGCTTCGTTAATAAAATCGA 59.965 41.667 12.43 0.00 0.00 3.59
3130 4536 5.186942 TGTAAATGCCTGGCTTCGTTAATA 58.813 37.500 21.03 0.00 0.00 0.98
3133 4539 3.006940 CTGTAAATGCCTGGCTTCGTTA 58.993 45.455 21.03 7.36 0.00 3.18
3134 4540 1.812571 CTGTAAATGCCTGGCTTCGTT 59.187 47.619 21.03 8.35 0.00 3.85
3138 4544 1.180029 CTGCTGTAAATGCCTGGCTT 58.820 50.000 21.03 11.16 0.00 4.35
3141 4547 1.669999 GGCCTGCTGTAAATGCCTGG 61.670 60.000 0.00 0.00 39.05 4.45
3144 4550 1.257055 TTGGGCCTGCTGTAAATGCC 61.257 55.000 4.53 0.00 41.42 4.40
3146 4552 2.562298 TCTTTTGGGCCTGCTGTAAATG 59.438 45.455 4.53 0.00 0.00 2.32
3151 4557 0.613012 GGATCTTTTGGGCCTGCTGT 60.613 55.000 4.53 0.00 0.00 4.40
3154 4560 3.068729 GCGGATCTTTTGGGCCTGC 62.069 63.158 4.53 0.00 0.00 4.85
3170 4576 2.450160 AGAGCACGTTTTCTTTTTGCG 58.550 42.857 0.00 0.00 38.26 4.85
3172 4578 5.499176 GCAAAGAGAGCACGTTTTCTTTTTG 60.499 40.000 23.86 23.86 43.17 2.44
3177 4583 2.288666 TGCAAAGAGAGCACGTTTTCT 58.711 42.857 0.00 0.00 37.02 2.52
3178 4584 2.755836 TGCAAAGAGAGCACGTTTTC 57.244 45.000 0.00 0.00 37.02 2.29
3183 4589 1.659601 CTCTGATGCAAAGAGAGCACG 59.340 52.381 20.02 0.00 45.95 5.34
3187 4593 2.765135 TCCTCCTCTGATGCAAAGAGAG 59.235 50.000 24.30 17.90 43.27 3.20
3188 4594 2.825223 TCCTCCTCTGATGCAAAGAGA 58.175 47.619 24.30 10.83 43.27 3.10
3193 4599 4.040047 TCCTAATTCCTCCTCTGATGCAA 58.960 43.478 0.00 0.00 0.00 4.08
3195 4601 4.696479 TTCCTAATTCCTCCTCTGATGC 57.304 45.455 0.00 0.00 0.00 3.91
3206 4612 1.804601 CGGGCGGTATTCCTAATTCC 58.195 55.000 0.00 0.00 0.00 3.01
3221 4627 1.078143 ATTTCACTCTCCTGCGGGC 60.078 57.895 6.73 0.00 0.00 6.13
3222 4628 0.250234 TGATTTCACTCTCCTGCGGG 59.750 55.000 4.71 4.71 0.00 6.13
3223 4629 1.338105 TGTGATTTCACTCTCCTGCGG 60.338 52.381 11.67 0.00 46.55 5.69
3224 4630 2.084610 TGTGATTTCACTCTCCTGCG 57.915 50.000 11.67 0.00 46.55 5.18
3225 4631 2.606725 CGATGTGATTTCACTCTCCTGC 59.393 50.000 11.67 0.00 46.55 4.85
3226 4632 3.193263 CCGATGTGATTTCACTCTCCTG 58.807 50.000 11.67 0.17 46.55 3.86
3227 4633 2.419297 GCCGATGTGATTTCACTCTCCT 60.419 50.000 11.67 0.00 46.55 3.69
3228 4634 1.936547 GCCGATGTGATTTCACTCTCC 59.063 52.381 11.67 0.00 46.55 3.71
3229 4635 1.936547 GGCCGATGTGATTTCACTCTC 59.063 52.381 11.67 7.70 46.55 3.20
3230 4636 1.556911 AGGCCGATGTGATTTCACTCT 59.443 47.619 11.67 0.00 46.55 3.24
3231 4637 2.029838 AGGCCGATGTGATTTCACTC 57.970 50.000 11.67 6.27 46.55 3.51
3232 4638 2.290260 TGAAGGCCGATGTGATTTCACT 60.290 45.455 11.67 0.00 46.55 3.41
3233 4639 2.083774 TGAAGGCCGATGTGATTTCAC 58.916 47.619 0.00 3.72 46.59 3.18
3234 4640 2.488204 TGAAGGCCGATGTGATTTCA 57.512 45.000 0.00 0.00 0.00 2.69
3235 4641 2.684881 ACATGAAGGCCGATGTGATTTC 59.315 45.455 14.98 4.09 31.47 2.17
3236 4642 2.726821 ACATGAAGGCCGATGTGATTT 58.273 42.857 14.98 0.00 31.47 2.17
3237 4643 2.425143 ACATGAAGGCCGATGTGATT 57.575 45.000 14.98 0.00 31.47 2.57
3238 4644 2.435805 ACTACATGAAGGCCGATGTGAT 59.564 45.455 21.65 10.97 34.60 3.06
3239 4645 1.831106 ACTACATGAAGGCCGATGTGA 59.169 47.619 21.65 9.74 34.60 3.58
3240 4646 2.315925 ACTACATGAAGGCCGATGTG 57.684 50.000 21.65 15.54 34.60 3.21
3241 4647 2.632377 CAACTACATGAAGGCCGATGT 58.368 47.619 18.42 18.42 36.72 3.06
3242 4648 1.942657 CCAACTACATGAAGGCCGATG 59.057 52.381 0.00 10.03 0.00 3.84
3243 4649 1.559682 ACCAACTACATGAAGGCCGAT 59.440 47.619 0.00 0.00 0.00 4.18
3244 4650 0.981183 ACCAACTACATGAAGGCCGA 59.019 50.000 0.00 0.00 0.00 5.54
3245 4651 1.086696 CACCAACTACATGAAGGCCG 58.913 55.000 0.00 0.00 0.00 6.13
3246 4652 0.811281 GCACCAACTACATGAAGGCC 59.189 55.000 0.00 0.00 0.00 5.19
3247 4653 0.811281 GGCACCAACTACATGAAGGC 59.189 55.000 0.00 0.00 0.00 4.35
3280 4686 4.522789 AGGTAGCAACAAAGGTGGTTTATG 59.477 41.667 0.00 0.00 0.00 1.90
3285 4691 1.202891 GGAGGTAGCAACAAAGGTGGT 60.203 52.381 0.00 0.00 0.00 4.16
3293 4699 3.130734 AGATTAGGGGAGGTAGCAACA 57.869 47.619 0.00 0.00 0.00 3.33
3294 4700 3.712218 AGAAGATTAGGGGAGGTAGCAAC 59.288 47.826 0.00 0.00 0.00 4.17
3295 4701 4.008916 AGAAGATTAGGGGAGGTAGCAA 57.991 45.455 0.00 0.00 0.00 3.91
3296 4702 3.708236 AGAAGATTAGGGGAGGTAGCA 57.292 47.619 0.00 0.00 0.00 3.49
3317 4723 7.094032 GGATGAAAGGTTCTTCAACAATGATCT 60.094 37.037 0.00 0.00 38.75 2.75
3318 4724 7.031975 GGATGAAAGGTTCTTCAACAATGATC 58.968 38.462 6.31 0.00 38.75 2.92
3329 4735 5.325239 CCCTAAAGTGGATGAAAGGTTCTT 58.675 41.667 0.00 0.00 0.00 2.52
3330 4736 4.811063 GCCCTAAAGTGGATGAAAGGTTCT 60.811 45.833 0.00 0.00 0.00 3.01
3340 4746 2.492025 TGGAGATGCCCTAAAGTGGAT 58.508 47.619 0.00 0.00 34.97 3.41
3343 4749 2.009774 CGTTGGAGATGCCCTAAAGTG 58.990 52.381 0.00 0.00 34.97 3.16
3344 4750 1.679032 GCGTTGGAGATGCCCTAAAGT 60.679 52.381 0.00 0.00 34.03 2.66
3352 4758 3.195698 GGACGGCGTTGGAGATGC 61.196 66.667 16.19 0.00 39.65 3.91
3353 4759 2.511600 GGGACGGCGTTGGAGATG 60.512 66.667 16.19 0.00 0.00 2.90
3354 4760 2.683933 AGGGACGGCGTTGGAGAT 60.684 61.111 16.19 0.00 0.00 2.75
3355 4761 3.379445 GAGGGACGGCGTTGGAGA 61.379 66.667 16.19 0.00 0.00 3.71
3356 4762 2.725203 TTTGAGGGACGGCGTTGGAG 62.725 60.000 16.19 0.00 0.00 3.86
3357 4763 2.809307 TTTGAGGGACGGCGTTGGA 61.809 57.895 16.19 0.00 0.00 3.53
3358 4764 2.281208 TTTGAGGGACGGCGTTGG 60.281 61.111 16.19 0.00 0.00 3.77
3359 4765 2.613506 GGTTTGAGGGACGGCGTTG 61.614 63.158 16.19 0.00 0.00 4.10
3360 4766 2.281276 GGTTTGAGGGACGGCGTT 60.281 61.111 16.19 0.00 0.00 4.84
3361 4767 3.552384 TGGTTTGAGGGACGGCGT 61.552 61.111 14.65 14.65 0.00 5.68
3362 4768 3.047877 GTGGTTTGAGGGACGGCG 61.048 66.667 4.80 4.80 0.00 6.46
3363 4769 2.671963 GGTGGTTTGAGGGACGGC 60.672 66.667 0.00 0.00 0.00 5.68
3364 4770 1.302511 CAGGTGGTTTGAGGGACGG 60.303 63.158 0.00 0.00 0.00 4.79
3365 4771 1.966451 GCAGGTGGTTTGAGGGACG 60.966 63.158 0.00 0.00 0.00 4.79
3366 4772 0.251341 ATGCAGGTGGTTTGAGGGAC 60.251 55.000 0.00 0.00 0.00 4.46
3367 4773 0.251297 CATGCAGGTGGTTTGAGGGA 60.251 55.000 0.00 0.00 0.00 4.20
3368 4774 0.251297 TCATGCAGGTGGTTTGAGGG 60.251 55.000 0.00 0.00 0.00 4.30
3369 4775 1.619654 TTCATGCAGGTGGTTTGAGG 58.380 50.000 0.00 0.00 0.00 3.86
3370 4776 3.226346 CATTCATGCAGGTGGTTTGAG 57.774 47.619 0.00 0.00 0.00 3.02
3392 4798 0.516877 TCGATATAACCCCGCGTACG 59.483 55.000 11.84 11.84 39.67 3.67
3393 4799 2.478539 GGATCGATATAACCCCGCGTAC 60.479 54.545 4.92 0.00 0.00 3.67
3394 4800 1.745087 GGATCGATATAACCCCGCGTA 59.255 52.381 4.92 0.00 0.00 4.42
3395 4801 0.529378 GGATCGATATAACCCCGCGT 59.471 55.000 4.92 0.00 0.00 6.01
3396 4802 0.815734 AGGATCGATATAACCCCGCG 59.184 55.000 0.00 0.00 0.00 6.46
3397 4803 2.100989 AGAGGATCGATATAACCCCGC 58.899 52.381 0.00 0.00 42.67 6.13
3398 4804 3.353557 TCAGAGGATCGATATAACCCCG 58.646 50.000 0.00 0.00 42.67 5.73
3399 4805 4.345854 ACTCAGAGGATCGATATAACCCC 58.654 47.826 0.00 0.00 42.67 4.95
3400 4806 6.039941 CCATACTCAGAGGATCGATATAACCC 59.960 46.154 0.00 0.00 42.67 4.11
3401 4807 6.829298 TCCATACTCAGAGGATCGATATAACC 59.171 42.308 0.00 0.00 42.67 2.85
3402 4808 7.337184 TGTCCATACTCAGAGGATCGATATAAC 59.663 40.741 0.00 0.00 42.67 1.89
3403 4809 7.337184 GTGTCCATACTCAGAGGATCGATATAA 59.663 40.741 0.00 0.00 42.67 0.98
3404 4810 6.824196 GTGTCCATACTCAGAGGATCGATATA 59.176 42.308 0.00 0.00 42.67 0.86
3405 4811 5.650266 GTGTCCATACTCAGAGGATCGATAT 59.350 44.000 0.00 0.00 42.67 1.63
3406 4812 5.004448 GTGTCCATACTCAGAGGATCGATA 58.996 45.833 0.00 0.00 42.67 2.92
3407 4813 3.823873 GTGTCCATACTCAGAGGATCGAT 59.176 47.826 0.00 0.00 42.67 3.59
3408 4814 3.215151 GTGTCCATACTCAGAGGATCGA 58.785 50.000 1.53 0.00 42.67 3.59
3409 4815 2.952310 TGTGTCCATACTCAGAGGATCG 59.048 50.000 1.53 0.00 42.67 3.69
3410 4816 3.957497 AGTGTGTCCATACTCAGAGGATC 59.043 47.826 1.53 0.00 33.33 3.36
3411 4817 3.987745 AGTGTGTCCATACTCAGAGGAT 58.012 45.455 1.53 0.00 33.33 3.24
3412 4818 3.458044 AGTGTGTCCATACTCAGAGGA 57.542 47.619 1.53 0.00 30.14 3.71
3413 4819 4.543590 AAAGTGTGTCCATACTCAGAGG 57.456 45.455 1.53 0.00 31.29 3.69
3414 4820 5.409826 GGAAAAAGTGTGTCCATACTCAGAG 59.590 44.000 0.00 0.00 31.29 3.35
3415 4821 5.305585 GGAAAAAGTGTGTCCATACTCAGA 58.694 41.667 0.00 0.00 31.29 3.27
3416 4822 4.455877 GGGAAAAAGTGTGTCCATACTCAG 59.544 45.833 0.00 0.00 31.29 3.35
3417 4823 4.394729 GGGAAAAAGTGTGTCCATACTCA 58.605 43.478 0.00 0.00 31.29 3.41
3418 4824 3.435671 CGGGAAAAAGTGTGTCCATACTC 59.564 47.826 0.00 0.00 31.29 2.59
3419 4825 3.408634 CGGGAAAAAGTGTGTCCATACT 58.591 45.455 0.00 0.00 34.07 2.12
3420 4826 2.095415 GCGGGAAAAAGTGTGTCCATAC 60.095 50.000 0.00 0.00 32.70 2.39
3421 4827 2.156098 GCGGGAAAAAGTGTGTCCATA 58.844 47.619 0.00 0.00 32.70 2.74
3422 4828 0.958822 GCGGGAAAAAGTGTGTCCAT 59.041 50.000 0.00 0.00 32.70 3.41
3423 4829 0.394488 TGCGGGAAAAAGTGTGTCCA 60.394 50.000 0.00 0.00 32.70 4.02
3424 4830 0.741915 TTGCGGGAAAAAGTGTGTCC 59.258 50.000 0.00 0.00 0.00 4.02
3425 4831 2.570442 TTTGCGGGAAAAAGTGTGTC 57.430 45.000 0.00 0.00 0.00 3.67
3791 5197 4.030216 GGATTGGAAGAAAATAGGCCCAA 58.970 43.478 0.00 0.00 37.96 4.12
3792 5198 3.012274 TGGATTGGAAGAAAATAGGCCCA 59.988 43.478 0.00 0.00 0.00 5.36
3793 5199 3.384789 GTGGATTGGAAGAAAATAGGCCC 59.615 47.826 0.00 0.00 0.00 5.80
3794 5200 3.384789 GGTGGATTGGAAGAAAATAGGCC 59.615 47.826 0.00 0.00 0.00 5.19
3795 5201 3.384789 GGGTGGATTGGAAGAAAATAGGC 59.615 47.826 0.00 0.00 0.00 3.93
3796 5202 3.960755 GGGGTGGATTGGAAGAAAATAGG 59.039 47.826 0.00 0.00 0.00 2.57
3797 5203 4.871822 AGGGGTGGATTGGAAGAAAATAG 58.128 43.478 0.00 0.00 0.00 1.73
3798 5204 4.965283 AGGGGTGGATTGGAAGAAAATA 57.035 40.909 0.00 0.00 0.00 1.40
3799 5205 3.852858 AGGGGTGGATTGGAAGAAAAT 57.147 42.857 0.00 0.00 0.00 1.82
3800 5206 3.142028 AGAAGGGGTGGATTGGAAGAAAA 59.858 43.478 0.00 0.00 0.00 2.29
3801 5207 2.721906 AGAAGGGGTGGATTGGAAGAAA 59.278 45.455 0.00 0.00 0.00 2.52
3802 5208 2.308866 GAGAAGGGGTGGATTGGAAGAA 59.691 50.000 0.00 0.00 0.00 2.52
3803 5209 1.916181 GAGAAGGGGTGGATTGGAAGA 59.084 52.381 0.00 0.00 0.00 2.87
3804 5210 1.918957 AGAGAAGGGGTGGATTGGAAG 59.081 52.381 0.00 0.00 0.00 3.46
3805 5211 1.916181 GAGAGAAGGGGTGGATTGGAA 59.084 52.381 0.00 0.00 0.00 3.53
3806 5212 1.584724 GAGAGAAGGGGTGGATTGGA 58.415 55.000 0.00 0.00 0.00 3.53
3807 5213 0.548510 GGAGAGAAGGGGTGGATTGG 59.451 60.000 0.00 0.00 0.00 3.16
3808 5214 0.548510 GGGAGAGAAGGGGTGGATTG 59.451 60.000 0.00 0.00 0.00 2.67
3809 5215 0.624795 GGGGAGAGAAGGGGTGGATT 60.625 60.000 0.00 0.00 0.00 3.01
3810 5216 1.004891 GGGGAGAGAAGGGGTGGAT 59.995 63.158 0.00 0.00 0.00 3.41
3811 5217 1.761780 AAGGGGAGAGAAGGGGTGGA 61.762 60.000 0.00 0.00 0.00 4.02
3812 5218 1.229984 AAGGGGAGAGAAGGGGTGG 60.230 63.158 0.00 0.00 0.00 4.61
3813 5219 1.994463 CAAGGGGAGAGAAGGGGTG 59.006 63.158 0.00 0.00 0.00 4.61
3814 5220 1.925972 GCAAGGGGAGAGAAGGGGT 60.926 63.158 0.00 0.00 0.00 4.95
3815 5221 1.210885 AAGCAAGGGGAGAGAAGGGG 61.211 60.000 0.00 0.00 0.00 4.79
3816 5222 0.701147 AAAGCAAGGGGAGAGAAGGG 59.299 55.000 0.00 0.00 0.00 3.95
3817 5223 1.831580 CAAAGCAAGGGGAGAGAAGG 58.168 55.000 0.00 0.00 0.00 3.46
3818 5224 1.172175 GCAAAGCAAGGGGAGAGAAG 58.828 55.000 0.00 0.00 0.00 2.85
3819 5225 0.478072 TGCAAAGCAAGGGGAGAGAA 59.522 50.000 0.00 0.00 34.76 2.87
3820 5226 0.700564 ATGCAAAGCAAGGGGAGAGA 59.299 50.000 0.00 0.00 43.62 3.10
3821 5227 1.101331 GATGCAAAGCAAGGGGAGAG 58.899 55.000 0.00 0.00 43.62 3.20
3822 5228 0.323725 GGATGCAAAGCAAGGGGAGA 60.324 55.000 0.00 0.00 43.62 3.71
3823 5229 1.660560 CGGATGCAAAGCAAGGGGAG 61.661 60.000 0.00 0.00 43.62 4.30
3824 5230 1.678635 CGGATGCAAAGCAAGGGGA 60.679 57.895 0.00 0.00 43.62 4.81
3825 5231 2.887360 CGGATGCAAAGCAAGGGG 59.113 61.111 0.00 0.00 43.62 4.79
3826 5232 2.182537 GCGGATGCAAAGCAAGGG 59.817 61.111 0.00 0.00 43.62 3.95
3836 5242 4.554036 GGAGGAGGGTGCGGATGC 62.554 72.222 0.00 0.00 43.20 3.91
3837 5243 2.765807 AGGAGGAGGGTGCGGATG 60.766 66.667 0.00 0.00 0.00 3.51
3838 5244 2.444895 GAGGAGGAGGGTGCGGAT 60.445 66.667 0.00 0.00 0.00 4.18
3839 5245 4.779733 GGAGGAGGAGGGTGCGGA 62.780 72.222 0.00 0.00 0.00 5.54
3843 5249 2.128507 GTAGCGGAGGAGGAGGGTG 61.129 68.421 0.00 0.00 0.00 4.61
3844 5250 2.279408 GTAGCGGAGGAGGAGGGT 59.721 66.667 0.00 0.00 0.00 4.34
3845 5251 2.522193 GGTAGCGGAGGAGGAGGG 60.522 72.222 0.00 0.00 0.00 4.30
3846 5252 2.907917 CGGTAGCGGAGGAGGAGG 60.908 72.222 6.39 0.00 0.00 4.30
3847 5253 3.597728 GCGGTAGCGGAGGAGGAG 61.598 72.222 17.08 0.00 0.00 3.69
3850 5256 4.208686 GTGGCGGTAGCGGAGGAG 62.209 72.222 17.08 0.00 46.35 3.69
3851 5257 4.753662 AGTGGCGGTAGCGGAGGA 62.754 66.667 17.08 0.00 46.35 3.71
3852 5258 4.208686 GAGTGGCGGTAGCGGAGG 62.209 72.222 17.08 0.00 46.35 4.30
3853 5259 1.822613 TAGAGTGGCGGTAGCGGAG 60.823 63.158 17.08 0.00 46.35 4.63
3854 5260 2.117156 GTAGAGTGGCGGTAGCGGA 61.117 63.158 17.08 0.00 46.35 5.54
3855 5261 2.412112 GTAGAGTGGCGGTAGCGG 59.588 66.667 17.08 0.00 46.35 5.52
3856 5262 2.061182 GAGGTAGAGTGGCGGTAGCG 62.061 65.000 10.57 10.57 46.35 4.26
3857 5263 0.752376 AGAGGTAGAGTGGCGGTAGC 60.752 60.000 0.00 0.00 44.18 3.58
3858 5264 1.310904 GAGAGGTAGAGTGGCGGTAG 58.689 60.000 0.00 0.00 0.00 3.18
3859 5265 0.106819 GGAGAGGTAGAGTGGCGGTA 60.107 60.000 0.00 0.00 0.00 4.02
3860 5266 1.380112 GGAGAGGTAGAGTGGCGGT 60.380 63.158 0.00 0.00 0.00 5.68
3861 5267 2.482333 CGGAGAGGTAGAGTGGCGG 61.482 68.421 0.00 0.00 0.00 6.13
3862 5268 3.111939 CGGAGAGGTAGAGTGGCG 58.888 66.667 0.00 0.00 0.00 5.69
3863 5269 2.787567 GGCGGAGAGGTAGAGTGGC 61.788 68.421 0.00 0.00 0.00 5.01
3864 5270 2.128507 GGGCGGAGAGGTAGAGTGG 61.129 68.421 0.00 0.00 0.00 4.00
3865 5271 0.970937 TTGGGCGGAGAGGTAGAGTG 60.971 60.000 0.00 0.00 0.00 3.51
3866 5272 0.971447 GTTGGGCGGAGAGGTAGAGT 60.971 60.000 0.00 0.00 0.00 3.24
3867 5273 1.817209 GTTGGGCGGAGAGGTAGAG 59.183 63.158 0.00 0.00 0.00 2.43
3868 5274 2.050350 CGTTGGGCGGAGAGGTAGA 61.050 63.158 0.00 0.00 36.85 2.59
3869 5275 2.494918 CGTTGGGCGGAGAGGTAG 59.505 66.667 0.00 0.00 36.85 3.18
3870 5276 3.766691 GCGTTGGGCGGAGAGGTA 61.767 66.667 0.00 0.00 41.69 3.08
3884 5290 4.118995 CCGGCAATGCATGTGCGT 62.119 61.111 20.23 0.00 45.83 5.24
3885 5291 3.813143 TCCGGCAATGCATGTGCG 61.813 61.111 20.23 16.45 45.83 5.34
3886 5292 2.202650 GTCCGGCAATGCATGTGC 60.203 61.111 19.37 19.37 41.45 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.