Multiple sequence alignment - TraesCS3B01G433800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G433800 chr3B 100.000 2678 0 0 1 2678 672526528 672523851 0.000000e+00 4946.0
1 TraesCS3B01G433800 chr3B 85.036 1096 135 18 999 2086 672576474 672575400 0.000000e+00 1088.0
2 TraesCS3B01G433800 chr3B 95.363 496 21 2 2184 2678 24434681 24434187 0.000000e+00 787.0
3 TraesCS3B01G433800 chr3B 86.275 714 52 13 45 733 672499700 672499008 0.000000e+00 734.0
4 TraesCS3B01G433800 chr3B 88.889 198 17 3 1886 2080 672780404 672780209 3.450000e-59 239.0
5 TraesCS3B01G433800 chr3B 79.661 118 24 0 1403 1520 672441733 672441616 4.750000e-13 86.1
6 TraesCS3B01G433800 chr3B 97.778 45 1 0 1 45 42427755 42427799 7.950000e-11 78.7
7 TraesCS3B01G433800 chr3B 97.674 43 1 0 588 630 672633776 672633734 1.030000e-09 75.0
8 TraesCS3B01G433800 chr3B 90.698 43 4 0 551 593 776337302 776337260 1.040000e-04 58.4
9 TraesCS3B01G433800 chr3B 96.875 32 1 0 551 582 769594926 769594957 1.000000e-03 54.7
10 TraesCS3B01G433800 chr3A 86.216 1596 161 32 619 2184 647390850 647389284 0.000000e+00 1674.0
11 TraesCS3B01G433800 chr3A 83.573 1254 164 23 941 2184 647361427 647360206 0.000000e+00 1136.0
12 TraesCS3B01G433800 chr3A 92.181 486 34 2 45 526 647391399 647390914 0.000000e+00 684.0
13 TraesCS3B01G433800 chr3A 80.352 682 127 6 1201 1878 647239453 647238775 6.610000e-141 510.0
14 TraesCS3B01G433800 chr3A 88.832 197 17 3 1886 2079 647451310 647451116 1.240000e-58 237.0
15 TraesCS3B01G433800 chr3A 94.231 52 3 0 579 630 647390915 647390864 2.210000e-11 80.5
16 TraesCS3B01G433800 chr3A 95.652 46 2 0 588 633 647385538 647385493 1.030000e-09 75.0
17 TraesCS3B01G433800 chr3D 87.207 852 96 9 1246 2086 510830033 510829184 0.000000e+00 957.0
18 TraesCS3B01G433800 chr3D 89.474 608 59 2 1484 2086 510909435 510908828 0.000000e+00 763.0
19 TraesCS3B01G433800 chr3D 90.557 413 35 3 1404 1813 510916567 510916156 6.520000e-151 544.0
20 TraesCS3B01G433800 chr3D 92.473 279 18 1 1811 2086 510913357 510913079 1.930000e-106 396.0
21 TraesCS3B01G433800 chr3D 88.235 204 18 4 1886 2086 511324750 511324550 3.450000e-59 239.0
22 TraesCS3B01G433800 chr3D 83.420 193 11 10 45 218 511324517 511324327 2.760000e-35 159.0
23 TraesCS3B01G433800 chr3D 95.652 46 2 0 588 633 511262252 511262207 1.030000e-09 75.0
24 TraesCS3B01G433800 chr3D 91.304 46 4 0 588 633 511258953 511258908 2.230000e-06 63.9
25 TraesCS3B01G433800 chr3D 85.714 63 2 1 525 580 62381651 62381589 2.880000e-05 60.2
26 TraesCS3B01G433800 chr5A 95.565 496 19 3 2184 2678 633638779 633639272 0.000000e+00 791.0
27 TraesCS3B01G433800 chr5A 84.375 64 5 5 553 612 554296380 554296318 1.040000e-04 58.4
28 TraesCS3B01G433800 chr5B 95.152 495 23 1 2184 2678 573911013 573911506 0.000000e+00 780.0
29 TraesCS3B01G433800 chr5B 95.152 495 21 3 2184 2678 697568750 697569241 0.000000e+00 778.0
30 TraesCS3B01G433800 chr5B 91.525 59 2 1 525 580 621591417 621591475 7.950000e-11 78.7
31 TraesCS3B01G433800 chr5B 91.071 56 3 2 525 580 116416123 116416070 1.030000e-09 75.0
32 TraesCS3B01G433800 chr6A 94.960 496 22 3 2184 2678 480862256 480861763 0.000000e+00 774.0
33 TraesCS3B01G433800 chr2B 94.758 496 23 3 2184 2678 798491686 798491193 0.000000e+00 769.0
34 TraesCS3B01G433800 chr2B 91.071 56 2 1 525 580 794503162 794503214 3.700000e-09 73.1
35 TraesCS3B01G433800 chr2B 87.500 48 6 0 551 598 89639591 89639544 3.720000e-04 56.5
36 TraesCS3B01G433800 chr1B 94.747 495 24 2 2184 2678 683258217 683257725 0.000000e+00 769.0
37 TraesCS3B01G433800 chr1B 94.747 495 23 2 2184 2678 641612031 641611540 0.000000e+00 767.0
38 TraesCS3B01G433800 chr1B 92.857 42 2 1 550 590 300713220 300713179 2.880000e-05 60.2
39 TraesCS3B01G433800 chr4B 94.567 497 21 6 2184 2678 328111208 328110716 0.000000e+00 763.0
40 TraesCS3B01G433800 chr4A 88.525 61 3 2 524 580 699194016 699193956 1.330000e-08 71.3
41 TraesCS3B01G433800 chr4A 92.683 41 2 1 553 592 592541410 592541370 1.040000e-04 58.4
42 TraesCS3B01G433800 chr4A 92.683 41 2 1 553 592 592827340 592827300 1.040000e-04 58.4
43 TraesCS3B01G433800 chr4A 92.683 41 2 1 553 592 593109781 593109741 1.040000e-04 58.4
44 TraesCS3B01G433800 chr2D 85.294 68 7 2 516 580 432002722 432002655 1.720000e-07 67.6
45 TraesCS3B01G433800 chr6B 86.667 60 5 3 524 580 484538383 484538324 2.230000e-06 63.9
46 TraesCS3B01G433800 chr7D 85.000 60 7 2 524 582 530901874 530901816 2.880000e-05 60.2
47 TraesCS3B01G433800 chr7B 86.207 58 4 4 551 605 493371042 493371098 2.880000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G433800 chr3B 672523851 672526528 2677 True 4946.000000 4946 100.000000 1 2678 1 chr3B.!!$R4 2677
1 TraesCS3B01G433800 chr3B 672575400 672576474 1074 True 1088.000000 1088 85.036000 999 2086 1 chr3B.!!$R5 1087
2 TraesCS3B01G433800 chr3B 672499008 672499700 692 True 734.000000 734 86.275000 45 733 1 chr3B.!!$R3 688
3 TraesCS3B01G433800 chr3A 647360206 647361427 1221 True 1136.000000 1136 83.573000 941 2184 1 chr3A.!!$R2 1243
4 TraesCS3B01G433800 chr3A 647385493 647391399 5906 True 628.375000 1674 92.070000 45 2184 4 chr3A.!!$R4 2139
5 TraesCS3B01G433800 chr3A 647238775 647239453 678 True 510.000000 510 80.352000 1201 1878 1 chr3A.!!$R1 677
6 TraesCS3B01G433800 chr3D 510829184 510830033 849 True 957.000000 957 87.207000 1246 2086 1 chr3D.!!$R2 840
7 TraesCS3B01G433800 chr3D 510908828 510916567 7739 True 567.666667 763 90.834667 1404 2086 3 chr3D.!!$R3 682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.634232 GCGTCTAAGCGTCTTCGTTC 59.366 55.0 0.0 0.0 39.49 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1731 8837 0.109412 GATTGTGTGCAGCAGCTTCC 60.109 55.0 1.76 0.0 42.74 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.894307 AATTTAAAGCCAGACGCGTC 57.106 45.000 31.30 31.30 44.76 5.19
22 23 2.094762 ATTTAAAGCCAGACGCGTCT 57.905 45.000 34.98 34.98 44.76 4.18
23 24 2.728690 TTTAAAGCCAGACGCGTCTA 57.271 45.000 38.75 21.49 44.76 2.59
24 25 2.728690 TTAAAGCCAGACGCGTCTAA 57.271 45.000 38.75 25.78 44.76 2.10
25 26 2.273370 TAAAGCCAGACGCGTCTAAG 57.727 50.000 38.75 31.57 44.76 2.18
26 27 1.014564 AAAGCCAGACGCGTCTAAGC 61.015 55.000 37.23 37.23 44.76 3.09
34 35 4.454554 GCGTCTAAGCGTCTTCGT 57.545 55.556 0.00 0.00 39.49 3.85
35 36 2.721925 GCGTCTAAGCGTCTTCGTT 58.278 52.632 0.00 0.00 39.49 3.85
36 37 0.634232 GCGTCTAAGCGTCTTCGTTC 59.366 55.000 0.00 0.00 39.49 3.95
37 38 1.728502 GCGTCTAAGCGTCTTCGTTCT 60.729 52.381 0.00 0.00 39.49 3.01
38 39 2.475187 GCGTCTAAGCGTCTTCGTTCTA 60.475 50.000 0.00 0.00 39.49 2.10
39 40 3.740590 CGTCTAAGCGTCTTCGTTCTAA 58.259 45.455 0.00 0.00 39.49 2.10
40 41 4.153986 CGTCTAAGCGTCTTCGTTCTAAA 58.846 43.478 0.00 0.00 39.49 1.85
41 42 4.614284 CGTCTAAGCGTCTTCGTTCTAAAA 59.386 41.667 0.00 0.00 39.49 1.52
42 43 5.116074 CGTCTAAGCGTCTTCGTTCTAAAAA 59.884 40.000 0.00 0.00 39.49 1.94
115 116 4.946157 CCATGAGAAGCATTGTCTTTACCT 59.054 41.667 0.00 0.00 39.45 3.08
157 158 9.645059 TCTGTCTCATATGTCTTAGTTTTTCTG 57.355 33.333 1.90 0.00 0.00 3.02
159 160 9.208022 TGTCTCATATGTCTTAGTTTTTCTGTG 57.792 33.333 1.90 0.00 0.00 3.66
237 238 5.105228 AGTGGGAAAATTGCCTTACATCATG 60.105 40.000 5.27 0.00 39.72 3.07
240 241 5.111293 GGAAAATTGCCTTACATCATGTGG 58.889 41.667 0.00 0.00 0.00 4.17
272 273 9.719279 CTCCTAACATAGTTAACTCTCTAAACG 57.281 37.037 12.39 0.00 0.00 3.60
335 336 2.807967 TGATGACTTTGACCTTCTTGCG 59.192 45.455 0.00 0.00 0.00 4.85
419 424 7.182361 ACATGTAATATTGTGCAGAGATTCG 57.818 36.000 0.00 0.00 0.00 3.34
431 436 4.083003 TGCAGAGATTCGCCGTTTTAAAAT 60.083 37.500 3.52 0.00 0.00 1.82
439 444 3.066342 TCGCCGTTTTAAAATGGTTGTGA 59.934 39.130 30.68 22.42 45.02 3.58
495 500 2.558359 GGCTGCATTAACTGGTGAGTTT 59.442 45.455 0.50 0.00 39.56 2.66
498 503 4.261572 GCTGCATTAACTGGTGAGTTTTCA 60.262 41.667 0.00 0.00 39.56 2.69
532 537 8.993404 TTACCTTATCTAAGAACTACTCCCTC 57.007 38.462 0.00 0.00 35.33 4.30
533 538 6.375418 ACCTTATCTAAGAACTACTCCCTCC 58.625 44.000 0.00 0.00 35.33 4.30
536 541 4.313020 TCTAAGAACTACTCCCTCCGTT 57.687 45.455 0.00 0.00 0.00 4.44
538 543 3.957591 AAGAACTACTCCCTCCGTTTC 57.042 47.619 0.00 0.00 0.00 2.78
540 545 3.236896 AGAACTACTCCCTCCGTTTCAA 58.763 45.455 0.00 0.00 0.00 2.69
542 547 4.286291 AGAACTACTCCCTCCGTTTCAAAT 59.714 41.667 0.00 0.00 0.00 2.32
544 549 5.750352 ACTACTCCCTCCGTTTCAAATTA 57.250 39.130 0.00 0.00 0.00 1.40
545 550 5.485620 ACTACTCCCTCCGTTTCAAATTAC 58.514 41.667 0.00 0.00 0.00 1.89
546 551 4.635699 ACTCCCTCCGTTTCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
547 552 4.576879 ACTCCCTCCGTTTCAAATTACTC 58.423 43.478 0.00 0.00 0.00 2.59
549 554 3.007182 TCCCTCCGTTTCAAATTACTCGT 59.993 43.478 0.00 0.00 0.00 4.18
551 556 3.991773 CCTCCGTTTCAAATTACTCGTCA 59.008 43.478 0.00 0.00 0.00 4.35
552 557 4.143179 CCTCCGTTTCAAATTACTCGTCAC 60.143 45.833 0.00 0.00 0.00 3.67
553 558 3.426191 TCCGTTTCAAATTACTCGTCACG 59.574 43.478 0.00 0.00 0.00 4.35
554 559 3.426191 CCGTTTCAAATTACTCGTCACGA 59.574 43.478 0.00 0.00 0.00 4.35
555 560 4.371882 CGTTTCAAATTACTCGTCACGAC 58.628 43.478 0.00 0.00 0.00 4.34
570 575 4.882447 GTCACGACGAGTAATTTGGAATG 58.118 43.478 0.00 0.00 0.00 2.67
571 576 3.930229 TCACGACGAGTAATTTGGAATGG 59.070 43.478 0.00 0.00 0.00 3.16
572 577 3.930229 CACGACGAGTAATTTGGAATGGA 59.070 43.478 0.00 0.00 0.00 3.41
573 578 4.032900 CACGACGAGTAATTTGGAATGGAG 59.967 45.833 0.00 0.00 0.00 3.86
574 579 3.555956 CGACGAGTAATTTGGAATGGAGG 59.444 47.826 0.00 0.00 0.00 4.30
575 580 3.877508 GACGAGTAATTTGGAATGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
576 581 3.521937 ACGAGTAATTTGGAATGGAGGGA 59.478 43.478 0.00 0.00 0.00 4.20
577 582 4.130118 CGAGTAATTTGGAATGGAGGGAG 58.870 47.826 0.00 0.00 0.00 4.30
578 583 4.384208 CGAGTAATTTGGAATGGAGGGAGT 60.384 45.833 0.00 0.00 0.00 3.85
579 584 5.163343 CGAGTAATTTGGAATGGAGGGAGTA 60.163 44.000 0.00 0.00 0.00 2.59
580 585 6.253946 AGTAATTTGGAATGGAGGGAGTAG 57.746 41.667 0.00 0.00 0.00 2.57
581 586 5.731678 AGTAATTTGGAATGGAGGGAGTAGT 59.268 40.000 0.00 0.00 0.00 2.73
582 587 4.510167 ATTTGGAATGGAGGGAGTAGTG 57.490 45.455 0.00 0.00 0.00 2.74
583 588 1.204146 TGGAATGGAGGGAGTAGTGC 58.796 55.000 0.00 0.00 0.00 4.40
584 589 1.204146 GGAATGGAGGGAGTAGTGCA 58.796 55.000 0.00 0.00 0.00 4.57
650 682 6.564709 TTGTCTCCATGTTTTCATCTCTTG 57.435 37.500 0.00 0.00 38.64 3.02
714 746 5.768317 TCTGATCATGTATTCATTCGCGTA 58.232 37.500 5.77 0.00 31.15 4.42
735 767 6.047231 CGTATGTTTCTCTTTAGGTAAGGGG 58.953 44.000 0.00 0.00 34.89 4.79
746 778 7.571025 TCTTTAGGTAAGGGGATGACATAAAC 58.429 38.462 0.00 0.00 34.46 2.01
752 784 3.267483 AGGGGATGACATAAACGTTTCG 58.733 45.455 18.42 12.55 0.00 3.46
894 926 3.181504 CGTTTTTGTGAAGGGACGTCTTT 60.182 43.478 16.46 10.40 37.81 2.52
896 928 5.447548 CGTTTTTGTGAAGGGACGTCTTTTA 60.448 40.000 16.46 4.73 37.81 1.52
903 935 5.936372 GTGAAGGGACGTCTTTTATAAAGGT 59.064 40.000 16.46 1.18 37.81 3.50
904 936 6.091849 GTGAAGGGACGTCTTTTATAAAGGTC 59.908 42.308 16.46 8.90 37.81 3.85
906 938 5.975282 AGGGACGTCTTTTATAAAGGTCTC 58.025 41.667 16.46 9.03 0.00 3.36
932 964 8.384607 TGCTAGACAGTTGTACTATATCTCAG 57.615 38.462 0.00 0.00 0.00 3.35
933 965 7.993758 TGCTAGACAGTTGTACTATATCTCAGT 59.006 37.037 0.00 0.00 0.00 3.41
934 966 8.286800 GCTAGACAGTTGTACTATATCTCAGTG 58.713 40.741 0.00 0.00 0.00 3.66
935 967 9.549078 CTAGACAGTTGTACTATATCTCAGTGA 57.451 37.037 0.00 0.00 0.00 3.41
936 968 8.988546 AGACAGTTGTACTATATCTCAGTGAT 57.011 34.615 0.00 0.00 39.11 3.06
952 994 4.122046 CAGTGATATTCCTTGATCGTGCA 58.878 43.478 0.00 0.00 0.00 4.57
964 1006 4.227512 TGATCGTGCATATTTTGATGGC 57.772 40.909 0.00 0.00 0.00 4.40
981 1024 3.680786 CGCAGTGACACCGGGAGA 61.681 66.667 6.32 0.00 0.00 3.71
995 1038 2.350514 GAGACAGCTGCCAGGCTT 59.649 61.111 15.27 0.00 41.00 4.35
1032 1075 1.890894 GAAGCTGGTCGTCTGGCTA 59.109 57.895 0.00 0.00 34.40 3.93
1041 1084 1.140589 CGTCTGGCTACTGCTCCTG 59.859 63.158 0.00 0.00 39.59 3.86
1056 1099 2.836262 CTCCTGAGCATCTTGTCATCC 58.164 52.381 0.00 0.00 34.92 3.51
1064 1107 3.944015 AGCATCTTGTCATCCTACTTTGC 59.056 43.478 0.00 0.00 0.00 3.68
1065 1108 3.944015 GCATCTTGTCATCCTACTTTGCT 59.056 43.478 0.00 0.00 0.00 3.91
1084 1127 5.619132 TGCTCATGGAATCAGTGATTCTA 57.381 39.130 33.88 30.96 45.30 2.10
1085 1128 6.183810 TGCTCATGGAATCAGTGATTCTAT 57.816 37.500 33.88 31.57 46.17 1.98
1093 1136 8.078060 TGGAATCAGTGATTCTATGTCTAACA 57.922 34.615 33.88 21.77 45.30 2.41
1095 1138 9.553064 GGAATCAGTGATTCTATGTCTAACATT 57.447 33.333 33.88 5.18 45.30 2.71
1142 1185 7.969536 AATCGTTGATTGATCCTAATGGTAG 57.030 36.000 0.00 0.00 30.42 3.18
1147 1190 7.500992 GTTGATTGATCCTAATGGTAGACTCA 58.499 38.462 0.00 0.00 34.23 3.41
1150 1193 7.987458 TGATTGATCCTAATGGTAGACTCAAAC 59.013 37.037 0.00 0.00 34.26 2.93
1167 1219 5.480422 ACTCAAACCCTCATGGAATTTTACC 59.520 40.000 0.00 0.00 38.00 2.85
1169 1221 3.732048 ACCCTCATGGAATTTTACCGT 57.268 42.857 0.00 0.00 38.00 4.83
1171 1223 2.612212 CCCTCATGGAATTTTACCGTCG 59.388 50.000 0.00 0.00 35.39 5.12
1175 1227 2.721274 TGGAATTTTACCGTCGTCGA 57.279 45.000 2.98 0.00 39.71 4.20
1177 1229 1.655597 GGAATTTTACCGTCGTCGACC 59.344 52.381 19.29 2.15 39.71 4.79
1178 1230 1.318491 GAATTTTACCGTCGTCGACCG 59.682 52.381 19.29 15.18 39.71 4.79
1188 1240 2.809601 GTCGACCGCGCTGATGTT 60.810 61.111 5.61 0.00 37.46 2.71
1189 1241 2.048597 TCGACCGCGCTGATGTTT 60.049 55.556 5.61 0.00 37.46 2.83
1190 1242 1.074319 GTCGACCGCGCTGATGTTTA 61.074 55.000 5.61 0.00 37.46 2.01
1191 1243 1.074319 TCGACCGCGCTGATGTTTAC 61.074 55.000 5.61 0.00 37.46 2.01
1192 1244 1.348538 CGACCGCGCTGATGTTTACA 61.349 55.000 5.61 0.00 0.00 2.41
1193 1245 0.370273 GACCGCGCTGATGTTTACAG 59.630 55.000 5.61 0.00 38.27 2.74
1194 1246 0.320421 ACCGCGCTGATGTTTACAGT 60.320 50.000 5.61 0.00 37.64 3.55
1195 1247 0.095245 CCGCGCTGATGTTTACAGTG 59.905 55.000 5.56 0.00 45.15 3.66
1196 1248 1.067693 CGCGCTGATGTTTACAGTGA 58.932 50.000 5.56 0.00 45.17 3.41
1197 1249 1.201812 CGCGCTGATGTTTACAGTGAC 60.202 52.381 5.56 3.70 45.17 3.67
1198 1250 1.201812 GCGCTGATGTTTACAGTGACG 60.202 52.381 0.00 1.94 45.17 4.35
1199 1251 1.201812 CGCTGATGTTTACAGTGACGC 60.202 52.381 0.00 0.00 45.17 5.19
1207 1259 2.936498 GTTTACAGTGACGCCATATGCT 59.064 45.455 0.00 0.00 38.05 3.79
1208 1260 2.509052 TACAGTGACGCCATATGCTC 57.491 50.000 0.00 0.00 38.05 4.26
1216 1268 0.530650 CGCCATATGCTCGTTCACCT 60.531 55.000 0.00 0.00 38.05 4.00
1232 1284 4.115279 CTGCGTGGTATGCTGGAG 57.885 61.111 0.00 0.00 0.00 3.86
1234 1286 2.187946 GCGTGGTATGCTGGAGCT 59.812 61.111 0.00 0.00 42.66 4.09
1238 1290 0.179062 GTGGTATGCTGGAGCTCTGG 60.179 60.000 14.64 7.84 42.66 3.86
1242 1294 1.415659 GTATGCTGGAGCTCTGGTGAT 59.584 52.381 14.64 2.67 42.66 3.06
1244 1296 1.117994 TGCTGGAGCTCTGGTGATAG 58.882 55.000 14.64 2.63 42.66 2.08
1266 1318 3.745797 GCAGGGTTCTCAGTTTGAGTCTT 60.746 47.826 6.03 0.00 44.58 3.01
1269 1321 3.142174 GGTTCTCAGTTTGAGTCTTGGG 58.858 50.000 6.03 0.00 44.58 4.12
1272 1324 4.771114 TCTCAGTTTGAGTCTTGGGAAA 57.229 40.909 6.03 0.00 44.58 3.13
1285 1337 5.561679 GTCTTGGGAAACTAGGACTTGAAT 58.438 41.667 0.00 0.00 43.33 2.57
1342 1394 1.048601 GACCACTCTGGACCTGTCAA 58.951 55.000 0.00 0.00 40.96 3.18
1367 1419 1.074566 CAACTTTTCAGGGCCTCTCCT 59.925 52.381 0.95 0.00 37.71 3.69
1380 1432 1.135915 CCTCTCCTGGAACACATCTCG 59.864 57.143 0.00 0.00 0.00 4.04
1381 1433 0.532573 TCTCCTGGAACACATCTCGC 59.467 55.000 0.00 0.00 0.00 5.03
1488 8592 3.011517 AGCACCCTCGCCCTTCAT 61.012 61.111 0.00 0.00 0.00 2.57
1504 8608 2.900716 TCATCACAACCAGTTCGACA 57.099 45.000 0.00 0.00 0.00 4.35
1517 8621 1.290955 TCGACAGCGAAATTCCGGT 59.709 52.632 0.00 0.00 44.78 5.28
1563 8667 0.509499 TTTCGTTCAATGTCGCCGAC 59.491 50.000 10.96 10.96 0.00 4.79
1572 8676 0.885879 ATGTCGCCGACAACTCACTA 59.114 50.000 25.07 0.00 45.96 2.74
1587 8691 3.099905 CTCACTATCAAGTCCTGTCCCA 58.900 50.000 0.00 0.00 31.97 4.37
1675 8781 4.273318 ACAAGAAGTGCAAGAAGAGGTTT 58.727 39.130 0.00 0.00 0.00 3.27
1682 8788 2.708861 TGCAAGAAGAGGTTTAGGGTGA 59.291 45.455 0.00 0.00 0.00 4.02
1721 8827 2.750815 CGTGTCCGGGAGATGTTTC 58.249 57.895 0.00 0.00 0.00 2.78
1746 8852 1.580845 ATTCGGAAGCTGCTGCACAC 61.581 55.000 18.42 8.05 42.74 3.82
1747 8853 2.939133 TTCGGAAGCTGCTGCACACA 62.939 55.000 18.42 0.00 42.74 3.72
1759 8865 0.240678 TGCACACAATCAATGACGCC 59.759 50.000 0.00 0.00 0.00 5.68
1771 8877 1.115326 ATGACGCCTCCATCATCGGA 61.115 55.000 0.00 0.00 29.27 4.55
1777 8883 3.153781 TCCATCATCGGAGCGGCA 61.154 61.111 1.45 0.00 0.00 5.69
1798 8904 1.970640 GCTGGGTTCATCTTTGGGTTT 59.029 47.619 0.00 0.00 0.00 3.27
1980 9086 3.748530 TCGTGTGCGTGGTCACAAGAA 62.749 52.381 9.39 0.00 46.74 2.52
2067 9180 6.430616 TGTGAAACTTCTCATATTGATGTGCA 59.569 34.615 0.00 0.00 38.04 4.57
2093 9206 4.574674 TCTGATCTTGTACAATGGGCTT 57.425 40.909 9.13 0.00 0.00 4.35
2130 9243 1.143183 CTGTACATTAGCCGCGGGT 59.857 57.895 34.39 34.39 0.00 5.28
2151 9264 1.613437 CCGACAGGAAAAGCATTTGGT 59.387 47.619 0.00 0.00 39.02 3.67
2167 9281 6.420604 AGCATTTGGTACACAGAAAATTTTCG 59.579 34.615 21.98 18.73 39.45 3.46
2184 9298 2.519377 TCGGTTTCTGGTAGTGTGTG 57.481 50.000 0.00 0.00 0.00 3.82
2185 9299 1.758280 TCGGTTTCTGGTAGTGTGTGT 59.242 47.619 0.00 0.00 0.00 3.72
2186 9300 2.168936 TCGGTTTCTGGTAGTGTGTGTT 59.831 45.455 0.00 0.00 0.00 3.32
2187 9301 3.384146 TCGGTTTCTGGTAGTGTGTGTTA 59.616 43.478 0.00 0.00 0.00 2.41
2188 9302 4.121317 CGGTTTCTGGTAGTGTGTGTTAA 58.879 43.478 0.00 0.00 0.00 2.01
2190 9304 4.025480 GGTTTCTGGTAGTGTGTGTTAACG 60.025 45.833 0.26 0.00 0.00 3.18
2191 9305 4.652421 TTCTGGTAGTGTGTGTTAACGA 57.348 40.909 0.26 0.00 0.00 3.85
2192 9306 4.233123 TCTGGTAGTGTGTGTTAACGAG 57.767 45.455 0.26 0.00 0.00 4.18
2194 9308 2.694628 TGGTAGTGTGTGTTAACGAGGT 59.305 45.455 0.26 0.00 0.00 3.85
2195 9309 3.132646 TGGTAGTGTGTGTTAACGAGGTT 59.867 43.478 0.26 0.00 0.00 3.50
2198 9312 3.192466 AGTGTGTGTTAACGAGGTTCAC 58.808 45.455 0.26 4.94 0.00 3.18
2199 9313 2.286025 GTGTGTGTTAACGAGGTTCACC 59.714 50.000 0.26 0.00 0.00 4.02
2200 9314 1.523934 GTGTGTTAACGAGGTTCACCG 59.476 52.381 0.26 0.00 42.08 4.94
2201 9315 1.408340 TGTGTTAACGAGGTTCACCGA 59.592 47.619 0.26 0.00 42.08 4.69
2202 9316 2.036217 TGTGTTAACGAGGTTCACCGAT 59.964 45.455 0.26 0.00 42.08 4.18
2204 9318 4.082081 TGTGTTAACGAGGTTCACCGATAT 60.082 41.667 0.26 0.00 42.08 1.63
2205 9319 4.266976 GTGTTAACGAGGTTCACCGATATG 59.733 45.833 0.26 0.00 42.08 1.78
2206 9320 2.596904 AACGAGGTTCACCGATATGG 57.403 50.000 0.00 0.00 46.41 2.74
2207 9321 0.104304 ACGAGGTTCACCGATATGGC 59.896 55.000 0.00 0.00 43.94 4.40
2209 9323 1.611977 CGAGGTTCACCGATATGGCTA 59.388 52.381 0.00 0.00 43.94 3.93
2210 9324 2.607282 CGAGGTTCACCGATATGGCTAC 60.607 54.545 0.00 0.00 43.94 3.58
2211 9325 2.364324 GAGGTTCACCGATATGGCTACA 59.636 50.000 0.00 0.00 43.94 2.74
2214 9328 3.326747 GTTCACCGATATGGCTACATCC 58.673 50.000 0.00 0.00 43.94 3.51
2215 9329 2.889512 TCACCGATATGGCTACATCCT 58.110 47.619 0.00 0.00 43.94 3.24
2216 9330 2.826128 TCACCGATATGGCTACATCCTC 59.174 50.000 0.00 0.00 43.94 3.71
2217 9331 1.819288 ACCGATATGGCTACATCCTCG 59.181 52.381 0.00 0.00 43.94 4.63
2218 9332 1.135139 CCGATATGGCTACATCCTCGG 59.865 57.143 13.56 13.56 46.66 4.63
2220 9334 1.482593 GATATGGCTACATCCTCGGGG 59.517 57.143 0.00 0.00 38.53 5.73
2221 9335 1.192146 TATGGCTACATCCTCGGGGC 61.192 60.000 0.00 0.00 38.53 5.80
2224 11161 3.142393 CTACATCCTCGGGGCCTG 58.858 66.667 5.83 5.83 0.00 4.85
2227 11164 2.238319 TACATCCTCGGGGCCTGACT 62.238 60.000 12.08 0.00 0.00 3.41
2229 11166 1.457831 ATCCTCGGGGCCTGACTAC 60.458 63.158 12.08 0.00 0.00 2.73
2231 11168 3.528370 CTCGGGGCCTGACTACGG 61.528 72.222 12.08 0.00 0.00 4.02
2240 11177 3.127352 CTGACTACGGGCGCTCCTC 62.127 68.421 7.64 1.25 0.00 3.71
2251 11188 4.083862 GCTCCTCCCCGTGACACC 62.084 72.222 0.00 0.00 0.00 4.16
2254 11191 4.065281 CCTCCCCGTGACACCGTC 62.065 72.222 0.00 0.00 0.00 4.79
2263 11200 3.500455 TGACACCGTCACAATACCG 57.500 52.632 0.00 0.00 37.67 4.02
2265 11202 0.668096 GACACCGTCACAATACCGCA 60.668 55.000 0.00 0.00 32.09 5.69
2266 11203 0.947180 ACACCGTCACAATACCGCAC 60.947 55.000 0.00 0.00 0.00 5.34
2267 11204 1.375013 ACCGTCACAATACCGCACC 60.375 57.895 0.00 0.00 0.00 5.01
2268 11205 2.104253 CCGTCACAATACCGCACCC 61.104 63.158 0.00 0.00 0.00 4.61
2269 11206 2.104253 CGTCACAATACCGCACCCC 61.104 63.158 0.00 0.00 0.00 4.95
2270 11207 2.104253 GTCACAATACCGCACCCCG 61.104 63.158 0.00 0.00 0.00 5.73
2321 11258 4.467084 CCCGTGTGCCCGTGCTAT 62.467 66.667 0.00 0.00 38.71 2.97
2322 11259 2.435938 CCGTGTGCCCGTGCTATT 60.436 61.111 0.00 0.00 38.71 1.73
2324 11261 0.531974 CCGTGTGCCCGTGCTATTAT 60.532 55.000 0.00 0.00 38.71 1.28
2330 11267 2.161609 GTGCCCGTGCTATTATATTGGC 59.838 50.000 0.00 0.00 38.71 4.52
2331 11268 2.224646 TGCCCGTGCTATTATATTGGCA 60.225 45.455 1.95 1.95 44.77 4.92
2333 11270 4.196193 GCCCGTGCTATTATATTGGCATA 58.804 43.478 8.62 0.00 37.58 3.14
2334 11271 4.273480 GCCCGTGCTATTATATTGGCATAG 59.727 45.833 8.62 6.66 37.58 2.23
2337 11274 5.880332 CCGTGCTATTATATTGGCATAGGTT 59.120 40.000 8.62 0.00 37.05 3.50
2338 11275 7.045416 CCGTGCTATTATATTGGCATAGGTTA 58.955 38.462 8.62 0.00 37.05 2.85
2339 11276 7.011109 CCGTGCTATTATATTGGCATAGGTTAC 59.989 40.741 8.62 0.00 37.05 2.50
2341 11278 9.396022 GTGCTATTATATTGGCATAGGTTACAT 57.604 33.333 8.62 0.00 37.05 2.29
2343 11280 8.765219 GCTATTATATTGGCATAGGTTACATCG 58.235 37.037 0.00 0.00 0.00 3.84
2344 11281 9.817809 CTATTATATTGGCATAGGTTACATCGT 57.182 33.333 0.00 0.00 0.00 3.73
2345 11282 7.899178 TTATATTGGCATAGGTTACATCGTG 57.101 36.000 0.00 0.00 0.00 4.35
2346 11283 3.620427 TTGGCATAGGTTACATCGTGT 57.380 42.857 0.00 0.00 0.00 4.49
2347 11284 2.899976 TGGCATAGGTTACATCGTGTG 58.100 47.619 1.58 0.00 0.00 3.82
2351 11288 4.202080 GGCATAGGTTACATCGTGTGTCTA 60.202 45.833 0.00 0.00 42.29 2.59
2352 11289 4.738740 GCATAGGTTACATCGTGTGTCTAC 59.261 45.833 0.00 1.46 42.29 2.59
2354 11291 2.494870 AGGTTACATCGTGTGTCTACCC 59.505 50.000 16.46 7.75 42.39 3.69
2355 11292 2.417787 GGTTACATCGTGTGTCTACCCC 60.418 54.545 12.48 0.00 42.29 4.95
2357 11294 2.519771 ACATCGTGTGTCTACCCCTA 57.480 50.000 0.00 0.00 35.77 3.53
2358 11295 2.097825 ACATCGTGTGTCTACCCCTAC 58.902 52.381 0.00 0.00 35.77 3.18
2360 11297 3.054139 ACATCGTGTGTCTACCCCTACTA 60.054 47.826 0.00 0.00 35.77 1.82
2362 11299 5.163163 ACATCGTGTGTCTACCCCTACTATA 60.163 44.000 0.00 0.00 35.77 1.31
2364 11301 6.686484 TCGTGTGTCTACCCCTACTATATA 57.314 41.667 0.00 0.00 0.00 0.86
2365 11302 7.262990 TCGTGTGTCTACCCCTACTATATAT 57.737 40.000 0.00 0.00 0.00 0.86
2366 11303 7.108194 TCGTGTGTCTACCCCTACTATATATG 58.892 42.308 0.00 0.00 0.00 1.78
2367 11304 7.038088 TCGTGTGTCTACCCCTACTATATATGA 60.038 40.741 0.00 0.00 0.00 2.15
2368 11305 7.280428 CGTGTGTCTACCCCTACTATATATGAG 59.720 44.444 0.00 0.00 0.00 2.90
2369 11306 8.327271 GTGTGTCTACCCCTACTATATATGAGA 58.673 40.741 0.00 0.00 0.00 3.27
2370 11307 8.549731 TGTGTCTACCCCTACTATATATGAGAG 58.450 40.741 0.00 0.00 0.00 3.20
2371 11308 7.994334 GTGTCTACCCCTACTATATATGAGAGG 59.006 44.444 0.00 0.00 0.00 3.69
2372 11309 6.999871 GTCTACCCCTACTATATATGAGAGGC 59.000 46.154 0.00 0.00 0.00 4.70
2373 11310 6.915413 TCTACCCCTACTATATATGAGAGGCT 59.085 42.308 0.00 0.00 0.00 4.58
2376 12507 7.588169 ACCCCTACTATATATGAGAGGCTTAG 58.412 42.308 0.00 0.00 0.00 2.18
2388 12519 4.402793 TGAGAGGCTTAGGATACAAGTGTC 59.597 45.833 0.00 0.00 41.41 3.67
2389 12520 3.707102 AGAGGCTTAGGATACAAGTGTCC 59.293 47.826 7.82 7.82 40.69 4.02
2410 12541 5.206587 TCCTATTAGGACACAACTCCTACC 58.793 45.833 8.42 0.00 41.80 3.18
2411 12542 4.344390 CCTATTAGGACACAACTCCTACCC 59.656 50.000 3.41 0.00 41.80 3.69
2413 12544 1.645710 AGGACACAACTCCTACCCTG 58.354 55.000 0.00 0.00 39.06 4.45
2414 12545 1.132817 AGGACACAACTCCTACCCTGT 60.133 52.381 0.00 0.00 39.06 4.00
2415 12546 1.275573 GGACACAACTCCTACCCTGTC 59.724 57.143 0.00 0.00 0.00 3.51
2416 12547 2.249139 GACACAACTCCTACCCTGTCT 58.751 52.381 0.00 0.00 0.00 3.41
2417 12548 3.428532 GACACAACTCCTACCCTGTCTA 58.571 50.000 0.00 0.00 0.00 2.59
2418 12549 3.163467 ACACAACTCCTACCCTGTCTAC 58.837 50.000 0.00 0.00 0.00 2.59
2420 12551 3.769844 CACAACTCCTACCCTGTCTACAT 59.230 47.826 0.00 0.00 0.00 2.29
2421 12552 4.954202 CACAACTCCTACCCTGTCTACATA 59.046 45.833 0.00 0.00 0.00 2.29
2423 12554 4.875578 ACTCCTACCCTGTCTACATACA 57.124 45.455 0.00 0.00 0.00 2.29
2424 12555 4.794334 ACTCCTACCCTGTCTACATACAG 58.206 47.826 0.00 0.00 45.33 2.74
2425 12556 4.230041 ACTCCTACCCTGTCTACATACAGT 59.770 45.833 3.56 0.00 44.45 3.55
2426 12557 5.431073 ACTCCTACCCTGTCTACATACAGTA 59.569 44.000 3.56 0.00 44.45 2.74
2427 12558 5.688807 TCCTACCCTGTCTACATACAGTAC 58.311 45.833 3.56 0.00 44.45 2.73
2429 12560 4.226427 ACCCTGTCTACATACAGTACGA 57.774 45.455 3.56 0.00 44.45 3.43
2430 12561 3.944015 ACCCTGTCTACATACAGTACGAC 59.056 47.826 3.56 0.00 44.45 4.34
2431 12562 4.197750 CCCTGTCTACATACAGTACGACT 58.802 47.826 3.56 0.00 44.45 4.18
2434 12565 4.835678 TGTCTACATACAGTACGACTCCA 58.164 43.478 0.00 0.00 34.62 3.86
2436 12567 5.353400 TGTCTACATACAGTACGACTCCAAG 59.647 44.000 0.00 0.00 34.62 3.61
2437 12568 5.353678 GTCTACATACAGTACGACTCCAAGT 59.646 44.000 0.00 0.00 32.67 3.16
2438 12569 4.698583 ACATACAGTACGACTCCAAGTC 57.301 45.455 0.00 0.00 41.71 3.01
2440 12571 1.991121 ACAGTACGACTCCAAGTCCA 58.009 50.000 1.69 0.00 42.12 4.02
2441 12572 2.313317 ACAGTACGACTCCAAGTCCAA 58.687 47.619 1.69 0.00 42.12 3.53
2442 12573 2.035576 ACAGTACGACTCCAAGTCCAAC 59.964 50.000 1.69 1.03 42.12 3.77
2443 12574 2.296471 CAGTACGACTCCAAGTCCAACT 59.704 50.000 1.69 3.10 42.12 3.16
2444 12575 2.296471 AGTACGACTCCAAGTCCAACTG 59.704 50.000 7.72 0.00 42.12 3.16
2445 12576 1.120530 ACGACTCCAAGTCCAACTGT 58.879 50.000 1.69 0.00 42.12 3.55
2446 12577 2.313317 ACGACTCCAAGTCCAACTGTA 58.687 47.619 1.69 0.00 42.12 2.74
2447 12578 2.696707 ACGACTCCAAGTCCAACTGTAA 59.303 45.455 1.69 0.00 42.12 2.41
2448 12579 3.057734 CGACTCCAAGTCCAACTGTAAC 58.942 50.000 1.69 0.00 42.12 2.50
2449 12580 3.400255 GACTCCAAGTCCAACTGTAACC 58.600 50.000 0.00 0.00 39.28 2.85
2451 12582 4.228824 ACTCCAAGTCCAACTGTAACCTA 58.771 43.478 0.00 0.00 0.00 3.08
2452 12583 4.657039 ACTCCAAGTCCAACTGTAACCTAA 59.343 41.667 0.00 0.00 0.00 2.69
2453 12584 4.964593 TCCAAGTCCAACTGTAACCTAAC 58.035 43.478 0.00 0.00 0.00 2.34
2454 12585 4.657039 TCCAAGTCCAACTGTAACCTAACT 59.343 41.667 0.00 0.00 0.00 2.24
2455 12586 5.131475 TCCAAGTCCAACTGTAACCTAACTT 59.869 40.000 0.00 0.00 0.00 2.66
2456 12587 5.238650 CCAAGTCCAACTGTAACCTAACTTG 59.761 44.000 0.00 0.00 41.09 3.16
2457 12588 5.625568 AGTCCAACTGTAACCTAACTTGT 57.374 39.130 0.00 0.00 0.00 3.16
2458 12589 6.736110 AGTCCAACTGTAACCTAACTTGTA 57.264 37.500 0.00 0.00 0.00 2.41
2459 12590 6.519382 AGTCCAACTGTAACCTAACTTGTAC 58.481 40.000 0.00 0.00 0.00 2.90
2460 12591 6.098695 AGTCCAACTGTAACCTAACTTGTACA 59.901 38.462 0.00 0.00 0.00 2.90
2461 12592 6.762661 GTCCAACTGTAACCTAACTTGTACAA 59.237 38.462 8.28 8.28 0.00 2.41
2463 12594 8.649591 TCCAACTGTAACCTAACTTGTACAATA 58.350 33.333 9.13 0.00 0.00 1.90
2478 12609 9.431887 ACTTGTACAATAATATTCGACACAACT 57.568 29.630 9.13 0.00 0.00 3.16
2479 12610 9.901724 CTTGTACAATAATATTCGACACAACTC 57.098 33.333 9.13 0.00 0.00 3.01
2480 12611 9.647797 TTGTACAATAATATTCGACACAACTCT 57.352 29.630 3.59 0.00 0.00 3.24
2484 12615 9.647797 ACAATAATATTCGACACAACTCTAACA 57.352 29.630 0.00 0.00 0.00 2.41
2488 12619 8.603242 AATATTCGACACAACTCTAACAAACT 57.397 30.769 0.00 0.00 0.00 2.66
2489 12620 5.961395 TTCGACACAACTCTAACAAACTC 57.039 39.130 0.00 0.00 0.00 3.01
2490 12621 4.365723 TCGACACAACTCTAACAAACTCC 58.634 43.478 0.00 0.00 0.00 3.85
2491 12622 4.116961 CGACACAACTCTAACAAACTCCA 58.883 43.478 0.00 0.00 0.00 3.86
2492 12623 4.025979 CGACACAACTCTAACAAACTCCAC 60.026 45.833 0.00 0.00 0.00 4.02
2493 12624 4.196971 ACACAACTCTAACAAACTCCACC 58.803 43.478 0.00 0.00 0.00 4.61
2494 12625 4.080526 ACACAACTCTAACAAACTCCACCT 60.081 41.667 0.00 0.00 0.00 4.00
2497 12628 4.086706 ACTCTAACAAACTCCACCTTGG 57.913 45.455 0.00 0.00 39.43 3.61
2499 12630 1.535462 CTAACAAACTCCACCTTGGCG 59.465 52.381 0.00 0.00 37.47 5.69
2500 12631 0.106918 AACAAACTCCACCTTGGCGA 60.107 50.000 0.00 0.00 37.47 5.54
2501 12632 0.106918 ACAAACTCCACCTTGGCGAA 60.107 50.000 0.00 0.00 37.47 4.70
2503 12634 2.224670 ACAAACTCCACCTTGGCGAATA 60.225 45.455 0.00 0.00 37.47 1.75
2504 12635 3.016736 CAAACTCCACCTTGGCGAATAT 58.983 45.455 0.00 0.00 37.47 1.28
2506 12637 2.919228 ACTCCACCTTGGCGAATATTC 58.081 47.619 5.30 5.30 37.47 1.75
2507 12638 2.505819 ACTCCACCTTGGCGAATATTCT 59.494 45.455 13.45 0.00 37.47 2.40
2508 12639 3.134458 CTCCACCTTGGCGAATATTCTC 58.866 50.000 13.45 5.39 37.47 2.87
2509 12640 2.158813 TCCACCTTGGCGAATATTCTCC 60.159 50.000 16.19 16.19 37.47 3.71
2510 12641 2.421388 CCACCTTGGCGAATATTCTCCA 60.421 50.000 20.78 20.78 40.09 3.86
2511 12642 2.614057 CACCTTGGCGAATATTCTCCAC 59.386 50.000 23.66 7.44 41.41 4.02
2512 12643 2.222027 CCTTGGCGAATATTCTCCACC 58.778 52.381 23.66 14.39 41.41 4.61
2513 12644 2.421388 CCTTGGCGAATATTCTCCACCA 60.421 50.000 23.66 16.44 41.41 4.17
2514 12645 2.325583 TGGCGAATATTCTCCACCAC 57.674 50.000 20.78 0.00 37.16 4.16
2515 12646 1.134220 TGGCGAATATTCTCCACCACC 60.134 52.381 20.78 7.98 37.16 4.61
2516 12647 1.141053 GGCGAATATTCTCCACCACCT 59.859 52.381 17.79 0.00 32.39 4.00
2517 12648 2.421529 GGCGAATATTCTCCACCACCTT 60.422 50.000 17.79 0.00 32.39 3.50
2518 12649 2.614057 GCGAATATTCTCCACCACCTTG 59.386 50.000 13.45 0.00 0.00 3.61
2519 12650 3.681594 GCGAATATTCTCCACCACCTTGA 60.682 47.826 13.45 0.00 0.00 3.02
2520 12651 4.513442 CGAATATTCTCCACCACCTTGAA 58.487 43.478 13.45 0.00 0.00 2.69
2521 12652 5.126067 CGAATATTCTCCACCACCTTGAAT 58.874 41.667 13.45 0.00 0.00 2.57
2524 12655 2.472695 TCTCCACCACCTTGAATTCG 57.527 50.000 0.04 0.00 0.00 3.34
2526 12657 2.076863 CTCCACCACCTTGAATTCGTC 58.923 52.381 0.04 0.00 0.00 4.20
2528 12659 0.796312 CACCACCTTGAATTCGTCCG 59.204 55.000 0.04 0.00 0.00 4.79
2529 12660 0.395312 ACCACCTTGAATTCGTCCGT 59.605 50.000 0.04 0.00 0.00 4.69
2531 12662 0.165944 CACCTTGAATTCGTCCGTGC 59.834 55.000 0.04 0.00 0.00 5.34
2532 12663 1.289109 ACCTTGAATTCGTCCGTGCG 61.289 55.000 0.04 0.00 0.00 5.34
2534 12665 0.093026 CTTGAATTCGTCCGTGCGTC 59.907 55.000 0.04 0.00 0.00 5.19
2537 12668 1.339235 GAATTCGTCCGTGCGTCGAA 61.339 55.000 17.83 17.83 45.15 3.71
2538 12669 1.611592 AATTCGTCCGTGCGTCGAAC 61.612 55.000 17.86 0.00 44.18 3.95
2539 12670 4.688419 TCGTCCGTGCGTCGAACC 62.688 66.667 0.00 0.00 42.86 3.62
2540 12671 4.695231 CGTCCGTGCGTCGAACCT 62.695 66.667 0.00 0.00 42.86 3.50
2541 12672 2.355481 GTCCGTGCGTCGAACCTT 60.355 61.111 0.00 0.00 42.86 3.50
2543 12674 2.355363 CCGTGCGTCGAACCTTCA 60.355 61.111 0.00 0.00 42.86 3.02
2544 12675 1.952133 CCGTGCGTCGAACCTTCAA 60.952 57.895 0.00 0.00 42.86 2.69
2546 12677 0.179250 CGTGCGTCGAACCTTCAATG 60.179 55.000 0.00 0.00 42.86 2.82
2547 12678 0.865769 GTGCGTCGAACCTTCAATGT 59.134 50.000 0.00 0.00 0.00 2.71
2549 12680 2.063266 TGCGTCGAACCTTCAATGTAC 58.937 47.619 0.00 0.00 0.00 2.90
2550 12681 2.063266 GCGTCGAACCTTCAATGTACA 58.937 47.619 0.00 0.00 0.00 2.90
2551 12682 2.671396 GCGTCGAACCTTCAATGTACAT 59.329 45.455 1.41 1.41 0.00 2.29
2552 12683 3.124636 GCGTCGAACCTTCAATGTACATT 59.875 43.478 15.47 15.47 0.00 2.71
2555 12686 4.693566 GTCGAACCTTCAATGTACATTGGA 59.306 41.667 36.25 30.93 46.08 3.53
2557 12688 4.695455 CGAACCTTCAATGTACATTGGACT 59.305 41.667 36.25 21.89 46.08 3.85
2559 12690 5.964958 ACCTTCAATGTACATTGGACTTG 57.035 39.130 36.25 25.14 46.08 3.16
2560 12691 5.630121 ACCTTCAATGTACATTGGACTTGA 58.370 37.500 36.25 21.53 46.08 3.02
2561 12692 5.707298 ACCTTCAATGTACATTGGACTTGAG 59.293 40.000 36.25 25.06 46.08 3.02
2562 12693 5.939883 CCTTCAATGTACATTGGACTTGAGA 59.060 40.000 36.25 19.35 46.08 3.27
2563 12694 6.600822 CCTTCAATGTACATTGGACTTGAGAT 59.399 38.462 36.25 5.69 46.08 2.75
2564 12695 7.770433 CCTTCAATGTACATTGGACTTGAGATA 59.230 37.037 36.25 18.15 46.08 1.98
2565 12696 8.492673 TTCAATGTACATTGGACTTGAGATAC 57.507 34.615 36.25 0.00 46.08 2.24
2566 12697 6.756542 TCAATGTACATTGGACTTGAGATACG 59.243 38.462 36.25 14.99 46.08 3.06
2568 12699 2.906354 ACATTGGACTTGAGATACGCC 58.094 47.619 0.00 0.00 0.00 5.68
2570 12701 3.118261 ACATTGGACTTGAGATACGCCAT 60.118 43.478 0.00 0.00 0.00 4.40
2571 12702 2.602257 TGGACTTGAGATACGCCATG 57.398 50.000 0.00 0.00 0.00 3.66
2573 12704 2.101415 TGGACTTGAGATACGCCATGAG 59.899 50.000 0.00 0.00 0.00 2.90
2574 12705 2.131183 GACTTGAGATACGCCATGAGC 58.869 52.381 0.00 0.00 38.52 4.26
2575 12706 1.482182 ACTTGAGATACGCCATGAGCA 59.518 47.619 0.00 0.00 44.04 4.26
2576 12707 1.863454 CTTGAGATACGCCATGAGCAC 59.137 52.381 0.00 0.00 44.04 4.40
2577 12708 0.104855 TGAGATACGCCATGAGCACC 59.895 55.000 0.00 0.00 44.04 5.01
2578 12709 0.941463 GAGATACGCCATGAGCACCG 60.941 60.000 0.00 0.00 44.04 4.94
2580 12711 2.978452 GATACGCCATGAGCACCGCT 62.978 60.000 0.00 0.00 44.04 5.52
2590 12721 2.047274 GCACCGCTGCTACTTCCA 60.047 61.111 0.00 0.00 40.63 3.53
2591 12722 2.103042 GCACCGCTGCTACTTCCAG 61.103 63.158 0.00 0.00 40.63 3.86
2593 12724 0.737715 CACCGCTGCTACTTCCAGAC 60.738 60.000 0.00 0.00 32.03 3.51
2594 12725 0.900647 ACCGCTGCTACTTCCAGACT 60.901 55.000 0.00 0.00 32.03 3.24
2595 12726 0.179124 CCGCTGCTACTTCCAGACTC 60.179 60.000 0.00 0.00 32.03 3.36
2596 12727 0.179124 CGCTGCTACTTCCAGACTCC 60.179 60.000 0.00 0.00 32.03 3.85
2597 12728 0.898320 GCTGCTACTTCCAGACTCCA 59.102 55.000 0.00 0.00 32.03 3.86
2599 12730 2.741228 GCTGCTACTTCCAGACTCCATG 60.741 54.545 0.00 0.00 32.03 3.66
2601 12732 2.234661 TGCTACTTCCAGACTCCATGTG 59.765 50.000 0.00 0.00 0.00 3.21
2602 12733 2.497675 GCTACTTCCAGACTCCATGTGA 59.502 50.000 0.00 0.00 0.00 3.58
2603 12734 3.677424 GCTACTTCCAGACTCCATGTGAC 60.677 52.174 0.00 0.00 0.00 3.67
2604 12735 2.614259 ACTTCCAGACTCCATGTGACT 58.386 47.619 0.00 0.00 0.00 3.41
2605 12736 2.975489 ACTTCCAGACTCCATGTGACTT 59.025 45.455 0.00 0.00 0.00 3.01
2606 12737 3.007398 ACTTCCAGACTCCATGTGACTTC 59.993 47.826 0.00 0.00 0.00 3.01
2607 12738 2.608623 TCCAGACTCCATGTGACTTCA 58.391 47.619 0.00 0.00 0.00 3.02
2608 12739 2.300152 TCCAGACTCCATGTGACTTCAC 59.700 50.000 2.19 2.19 46.59 3.18
2609 12740 2.613977 CCAGACTCCATGTGACTTCACC 60.614 54.545 6.91 0.00 45.88 4.02
2610 12741 2.301296 CAGACTCCATGTGACTTCACCT 59.699 50.000 6.91 0.00 45.88 4.00
2611 12742 2.301296 AGACTCCATGTGACTTCACCTG 59.699 50.000 6.91 7.22 45.88 4.00
2613 12744 0.764271 TCCATGTGACTTCACCTGCA 59.236 50.000 6.91 0.00 45.88 4.41
2614 12745 1.142667 TCCATGTGACTTCACCTGCAA 59.857 47.619 6.91 0.00 45.88 4.08
2615 12746 1.267806 CCATGTGACTTCACCTGCAAC 59.732 52.381 6.91 0.00 45.88 4.17
2616 12747 2.224606 CATGTGACTTCACCTGCAACT 58.775 47.619 6.91 0.00 45.88 3.16
2617 12748 1.667236 TGTGACTTCACCTGCAACTG 58.333 50.000 6.91 0.00 45.88 3.16
2618 12749 1.065491 TGTGACTTCACCTGCAACTGT 60.065 47.619 6.91 0.00 45.88 3.55
2619 12750 2.169561 TGTGACTTCACCTGCAACTGTA 59.830 45.455 6.91 0.00 45.88 2.74
2620 12751 2.802816 GTGACTTCACCTGCAACTGTAG 59.197 50.000 0.00 0.00 40.85 2.74
2621 12752 2.434336 TGACTTCACCTGCAACTGTAGT 59.566 45.455 3.12 3.12 0.00 2.73
2622 12753 3.060602 GACTTCACCTGCAACTGTAGTC 58.939 50.000 11.79 11.79 30.61 2.59
2623 12754 2.224305 ACTTCACCTGCAACTGTAGTCC 60.224 50.000 0.00 0.00 0.00 3.85
2624 12755 0.685097 TCACCTGCAACTGTAGTCCC 59.315 55.000 0.00 0.00 0.00 4.46
2625 12756 0.687354 CACCTGCAACTGTAGTCCCT 59.313 55.000 0.00 0.00 0.00 4.20
2626 12757 1.072331 CACCTGCAACTGTAGTCCCTT 59.928 52.381 0.00 0.00 0.00 3.95
2627 12758 1.348036 ACCTGCAACTGTAGTCCCTTC 59.652 52.381 0.00 0.00 0.00 3.46
2629 12760 2.039084 CCTGCAACTGTAGTCCCTTCTT 59.961 50.000 0.00 0.00 0.00 2.52
2630 12761 3.070018 CTGCAACTGTAGTCCCTTCTTG 58.930 50.000 0.00 0.00 0.00 3.02
2631 12762 2.438021 TGCAACTGTAGTCCCTTCTTGT 59.562 45.455 0.00 0.00 0.00 3.16
2634 12765 4.743955 GCAACTGTAGTCCCTTCTTGTCTT 60.744 45.833 0.00 0.00 0.00 3.01
2637 12768 4.902448 ACTGTAGTCCCTTCTTGTCTTCTT 59.098 41.667 0.00 0.00 0.00 2.52
2638 12769 5.011227 ACTGTAGTCCCTTCTTGTCTTCTTC 59.989 44.000 0.00 0.00 0.00 2.87
2639 12770 4.899457 TGTAGTCCCTTCTTGTCTTCTTCA 59.101 41.667 0.00 0.00 0.00 3.02
2640 12771 4.344359 AGTCCCTTCTTGTCTTCTTCAC 57.656 45.455 0.00 0.00 0.00 3.18
2641 12772 3.711704 AGTCCCTTCTTGTCTTCTTCACA 59.288 43.478 0.00 0.00 0.00 3.58
2643 12774 5.066593 GTCCCTTCTTGTCTTCTTCACAAT 58.933 41.667 0.00 0.00 33.30 2.71
2644 12775 5.180304 GTCCCTTCTTGTCTTCTTCACAATC 59.820 44.000 0.00 0.00 33.30 2.67
2645 12776 5.065914 CCCTTCTTGTCTTCTTCACAATCA 58.934 41.667 0.00 0.00 33.30 2.57
2647 12778 6.433766 CCTTCTTGTCTTCTTCACAATCAAC 58.566 40.000 0.00 0.00 33.30 3.18
2648 12779 6.038603 CCTTCTTGTCTTCTTCACAATCAACA 59.961 38.462 0.00 0.00 33.30 3.33
2649 12780 6.363577 TCTTGTCTTCTTCACAATCAACAC 57.636 37.500 0.00 0.00 33.30 3.32
2650 12781 6.115446 TCTTGTCTTCTTCACAATCAACACT 58.885 36.000 0.00 0.00 33.30 3.55
2652 12783 4.507756 TGTCTTCTTCACAATCAACACTCG 59.492 41.667 0.00 0.00 0.00 4.18
2653 12784 4.745125 GTCTTCTTCACAATCAACACTCGA 59.255 41.667 0.00 0.00 0.00 4.04
2654 12785 4.984785 TCTTCTTCACAATCAACACTCGAG 59.015 41.667 11.84 11.84 0.00 4.04
2655 12786 3.059884 TCTTCACAATCAACACTCGAGC 58.940 45.455 13.61 0.00 0.00 5.03
2657 12788 2.832563 TCACAATCAACACTCGAGCAA 58.167 42.857 13.61 0.00 0.00 3.91
2658 12789 3.202097 TCACAATCAACACTCGAGCAAA 58.798 40.909 13.61 0.00 0.00 3.68
2659 12790 3.625313 TCACAATCAACACTCGAGCAAAA 59.375 39.130 13.61 0.00 0.00 2.44
2660 12791 4.275689 TCACAATCAACACTCGAGCAAAAT 59.724 37.500 13.61 0.00 0.00 1.82
2661 12792 4.977963 CACAATCAACACTCGAGCAAAATT 59.022 37.500 13.61 3.69 0.00 1.82
2663 12794 6.636447 CACAATCAACACTCGAGCAAAATTAA 59.364 34.615 13.61 0.00 0.00 1.40
2664 12795 6.857964 ACAATCAACACTCGAGCAAAATTAAG 59.142 34.615 13.61 0.00 0.00 1.85
2668 12799 5.358298 ACACTCGAGCAAAATTAAGTTCC 57.642 39.130 13.61 0.00 0.00 3.62
2669 12800 5.063880 ACACTCGAGCAAAATTAAGTTCCT 58.936 37.500 13.61 0.00 0.00 3.36
2670 12801 5.179555 ACACTCGAGCAAAATTAAGTTCCTC 59.820 40.000 13.61 6.33 0.00 3.71
2672 12803 5.179555 ACTCGAGCAAAATTAAGTTCCTCAC 59.820 40.000 13.61 0.00 0.00 3.51
2673 12804 5.305585 TCGAGCAAAATTAAGTTCCTCACT 58.694 37.500 13.28 0.00 37.30 3.41
2674 12805 6.460781 TCGAGCAAAATTAAGTTCCTCACTA 58.539 36.000 13.28 0.98 32.94 2.74
2676 12807 6.369065 CGAGCAAAATTAAGTTCCTCACTACT 59.631 38.462 13.28 0.00 32.94 2.57
2677 12808 7.412020 CGAGCAAAATTAAGTTCCTCACTACTC 60.412 40.741 13.28 0.00 32.94 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.998341 AGACGCGTCTGGCTTTAAATTAA 59.002 39.130 38.89 0.00 38.75 1.40
1 2 3.592059 AGACGCGTCTGGCTTTAAATTA 58.408 40.909 38.89 0.00 38.75 1.40
2 3 2.423577 AGACGCGTCTGGCTTTAAATT 58.576 42.857 38.89 12.23 38.75 1.82
3 4 2.094762 AGACGCGTCTGGCTTTAAAT 57.905 45.000 38.89 12.79 38.75 1.40
4 5 2.728690 TAGACGCGTCTGGCTTTAAA 57.271 45.000 43.41 23.76 40.71 1.52
5 6 2.602878 CTTAGACGCGTCTGGCTTTAA 58.397 47.619 43.41 29.50 40.71 1.52
6 7 1.734707 GCTTAGACGCGTCTGGCTTTA 60.735 52.381 43.41 25.20 40.71 1.85
7 8 1.014564 GCTTAGACGCGTCTGGCTTT 61.015 55.000 43.41 24.23 40.71 3.51
8 9 1.446272 GCTTAGACGCGTCTGGCTT 60.446 57.895 43.41 24.93 40.71 4.35
9 10 2.182030 GCTTAGACGCGTCTGGCT 59.818 61.111 43.41 25.30 40.71 4.75
17 18 0.634232 GAACGAAGACGCTTAGACGC 59.366 55.000 0.00 0.00 43.96 5.19
18 19 2.244281 AGAACGAAGACGCTTAGACG 57.756 50.000 0.00 0.00 43.96 4.18
19 20 6.443876 TTTTTAGAACGAAGACGCTTAGAC 57.556 37.500 0.00 2.23 43.96 2.59
40 41 9.566432 TCAAACCATGGCTTGTTAATTATTTTT 57.434 25.926 23.77 4.82 0.00 1.94
41 42 9.737844 ATCAAACCATGGCTTGTTAATTATTTT 57.262 25.926 23.77 5.22 0.00 1.82
42 43 9.382275 GATCAAACCATGGCTTGTTAATTATTT 57.618 29.630 23.77 5.41 0.00 1.40
43 44 7.986889 GGATCAAACCATGGCTTGTTAATTATT 59.013 33.333 23.77 0.00 0.00 1.40
115 116 5.023533 AGACAGACAGCTACTTTGTCAAA 57.976 39.130 16.98 0.00 45.72 2.69
157 158 8.562052 TGTATCACATCATCAATTTATGAGCAC 58.438 33.333 8.23 1.63 42.53 4.40
237 238 7.876582 AGTTAACTATGTTAGGAGTTCAACCAC 59.123 37.037 6.26 0.00 37.16 4.16
240 241 9.356433 GAGAGTTAACTATGTTAGGAGTTCAAC 57.644 37.037 7.64 0.00 37.16 3.18
395 400 6.293081 GCGAATCTCTGCACAATATTACATGT 60.293 38.462 2.69 2.69 0.00 3.21
401 406 2.545526 CGGCGAATCTCTGCACAATATT 59.454 45.455 0.00 0.00 0.00 1.28
404 409 0.391661 ACGGCGAATCTCTGCACAAT 60.392 50.000 16.62 0.00 0.00 2.71
406 411 0.602638 AAACGGCGAATCTCTGCACA 60.603 50.000 16.62 0.00 0.00 4.57
419 424 4.208253 CAGTCACAACCATTTTAAAACGGC 59.792 41.667 12.82 0.00 0.00 5.68
431 436 3.023119 AGCAATTGAACAGTCACAACCA 58.977 40.909 10.34 0.00 31.90 3.67
439 444 1.338973 CACCTGCAGCAATTGAACAGT 59.661 47.619 10.34 0.00 0.00 3.55
495 500 9.096823 TCTTAGATAAGGTAAGGTGTTTCTGAA 57.903 33.333 0.00 0.00 34.14 3.02
498 503 9.102453 AGTTCTTAGATAAGGTAAGGTGTTTCT 57.898 33.333 0.00 0.00 34.14 2.52
532 537 3.426191 TCGTGACGAGTAATTTGAAACGG 59.574 43.478 2.39 0.00 0.00 4.44
533 538 4.371882 GTCGTGACGAGTAATTTGAAACG 58.628 43.478 8.41 0.00 36.23 3.60
549 554 3.930229 CCATTCCAAATTACTCGTCGTGA 59.070 43.478 0.56 0.00 0.00 4.35
551 556 4.181578 CTCCATTCCAAATTACTCGTCGT 58.818 43.478 0.00 0.00 0.00 4.34
552 557 3.555956 CCTCCATTCCAAATTACTCGTCG 59.444 47.826 0.00 0.00 0.00 5.12
553 558 3.877508 CCCTCCATTCCAAATTACTCGTC 59.122 47.826 0.00 0.00 0.00 4.20
554 559 3.521937 TCCCTCCATTCCAAATTACTCGT 59.478 43.478 0.00 0.00 0.00 4.18
555 560 4.130118 CTCCCTCCATTCCAAATTACTCG 58.870 47.826 0.00 0.00 0.00 4.18
556 561 5.117406 ACTCCCTCCATTCCAAATTACTC 57.883 43.478 0.00 0.00 0.00 2.59
557 562 5.731678 ACTACTCCCTCCATTCCAAATTACT 59.268 40.000 0.00 0.00 0.00 2.24
559 564 5.631481 GCACTACTCCCTCCATTCCAAATTA 60.631 44.000 0.00 0.00 0.00 1.40
560 565 4.860022 CACTACTCCCTCCATTCCAAATT 58.140 43.478 0.00 0.00 0.00 1.82
562 567 2.026262 GCACTACTCCCTCCATTCCAAA 60.026 50.000 0.00 0.00 0.00 3.28
564 569 1.204146 GCACTACTCCCTCCATTCCA 58.796 55.000 0.00 0.00 0.00 3.53
565 570 1.139853 CTGCACTACTCCCTCCATTCC 59.860 57.143 0.00 0.00 0.00 3.01
567 572 2.114616 CTCTGCACTACTCCCTCCATT 58.885 52.381 0.00 0.00 0.00 3.16
568 573 1.007721 ACTCTGCACTACTCCCTCCAT 59.992 52.381 0.00 0.00 0.00 3.41
569 574 0.409876 ACTCTGCACTACTCCCTCCA 59.590 55.000 0.00 0.00 0.00 3.86
570 575 2.025898 GTACTCTGCACTACTCCCTCC 58.974 57.143 0.00 0.00 0.00 4.30
571 576 2.724454 TGTACTCTGCACTACTCCCTC 58.276 52.381 0.00 0.00 0.00 4.30
572 577 2.901338 TGTACTCTGCACTACTCCCT 57.099 50.000 0.00 0.00 0.00 4.20
573 578 3.024547 TCATGTACTCTGCACTACTCCC 58.975 50.000 0.00 0.00 0.00 4.30
574 579 4.720649 TTCATGTACTCTGCACTACTCC 57.279 45.455 0.00 0.00 0.00 3.85
575 580 6.333416 TGATTTCATGTACTCTGCACTACTC 58.667 40.000 0.00 0.00 0.00 2.59
576 581 6.286240 TGATTTCATGTACTCTGCACTACT 57.714 37.500 0.00 0.00 0.00 2.57
577 582 6.368791 TGTTGATTTCATGTACTCTGCACTAC 59.631 38.462 0.00 0.00 0.00 2.73
578 583 6.463360 TGTTGATTTCATGTACTCTGCACTA 58.537 36.000 0.00 0.00 0.00 2.74
579 584 5.308014 TGTTGATTTCATGTACTCTGCACT 58.692 37.500 0.00 0.00 0.00 4.40
580 585 5.611796 TGTTGATTTCATGTACTCTGCAC 57.388 39.130 0.00 0.00 0.00 4.57
581 586 6.631971 TTTGTTGATTTCATGTACTCTGCA 57.368 33.333 0.00 0.00 0.00 4.41
582 587 5.570589 GCTTTGTTGATTTCATGTACTCTGC 59.429 40.000 0.00 0.00 0.00 4.26
583 588 6.671190 TGCTTTGTTGATTTCATGTACTCTG 58.329 36.000 0.00 0.00 0.00 3.35
584 589 6.882610 TGCTTTGTTGATTTCATGTACTCT 57.117 33.333 0.00 0.00 0.00 3.24
706 738 5.416947 ACCTAAAGAGAAACATACGCGAAT 58.583 37.500 15.93 0.00 0.00 3.34
714 746 6.447084 TCATCCCCTTACCTAAAGAGAAACAT 59.553 38.462 0.00 0.00 37.38 2.71
746 778 7.328112 GCTACTAGAAATACATGAACGAAACG 58.672 38.462 0.00 0.00 0.00 3.60
752 784 4.148348 CGGCGCTACTAGAAATACATGAAC 59.852 45.833 7.64 0.00 0.00 3.18
870 902 0.378962 CGTCCCTTCACAAAAACGCA 59.621 50.000 0.00 0.00 0.00 5.24
878 910 5.935789 CCTTTATAAAAGACGTCCCTTCACA 59.064 40.000 13.01 0.00 0.00 3.58
922 954 9.949174 CGATCAAGGAATATCACTGAGATATAG 57.051 37.037 7.82 0.00 46.72 1.31
923 955 9.467796 ACGATCAAGGAATATCACTGAGATATA 57.532 33.333 7.82 0.00 46.72 0.86
925 957 7.597386 CACGATCAAGGAATATCACTGAGATA 58.403 38.462 0.00 0.00 43.11 1.98
928 960 4.447054 GCACGATCAAGGAATATCACTGAG 59.553 45.833 0.00 0.00 0.00 3.35
929 961 4.141959 TGCACGATCAAGGAATATCACTGA 60.142 41.667 0.00 0.00 0.00 3.41
932 964 6.974932 ATATGCACGATCAAGGAATATCAC 57.025 37.500 0.00 0.00 0.00 3.06
933 965 7.984422 AAATATGCACGATCAAGGAATATCA 57.016 32.000 0.00 0.00 0.00 2.15
934 966 8.506437 TCAAAATATGCACGATCAAGGAATATC 58.494 33.333 0.00 0.00 0.00 1.63
935 967 8.394971 TCAAAATATGCACGATCAAGGAATAT 57.605 30.769 0.00 0.00 0.00 1.28
936 968 7.800155 TCAAAATATGCACGATCAAGGAATA 57.200 32.000 0.00 0.00 0.00 1.75
937 969 6.698008 TCAAAATATGCACGATCAAGGAAT 57.302 33.333 0.00 0.00 0.00 3.01
938 970 6.459985 CCATCAAAATATGCACGATCAAGGAA 60.460 38.462 0.00 0.00 0.00 3.36
952 994 3.016031 TGTCACTGCGCCATCAAAATAT 58.984 40.909 4.18 0.00 0.00 1.28
964 1006 3.680786 TCTCCCGGTGTCACTGCG 61.681 66.667 6.25 0.00 0.00 5.18
981 1024 1.672356 CGTAAAGCCTGGCAGCTGT 60.672 57.895 22.65 7.87 44.11 4.40
993 1036 3.615056 TCGTGTAACCATGCATCGTAAAG 59.385 43.478 0.00 0.00 0.00 1.85
995 1038 3.233684 TCGTGTAACCATGCATCGTAA 57.766 42.857 0.00 0.00 0.00 3.18
1041 1084 4.034975 GCAAAGTAGGATGACAAGATGCTC 59.965 45.833 0.00 0.00 0.00 4.26
1046 1089 4.890158 TGAGCAAAGTAGGATGACAAGA 57.110 40.909 0.00 0.00 0.00 3.02
1049 1092 3.519107 TCCATGAGCAAAGTAGGATGACA 59.481 43.478 0.00 0.00 0.00 3.58
1056 1099 5.181009 TCACTGATTCCATGAGCAAAGTAG 58.819 41.667 0.00 0.00 0.00 2.57
1064 1107 7.443477 AGACATAGAATCACTGATTCCATGAG 58.557 38.462 30.87 18.69 44.66 2.90
1065 1108 7.370905 AGACATAGAATCACTGATTCCATGA 57.629 36.000 30.87 16.24 44.66 3.07
1110 1153 5.939883 AGGATCAATCAACGATTGTTTGAGA 59.060 36.000 19.37 0.00 46.48 3.27
1142 1185 5.728637 AAAATTCCATGAGGGTTTGAGTC 57.271 39.130 0.00 0.00 38.11 3.36
1147 1190 4.412843 ACGGTAAAATTCCATGAGGGTTT 58.587 39.130 0.00 0.00 38.11 3.27
1150 1193 2.612212 CGACGGTAAAATTCCATGAGGG 59.388 50.000 0.00 0.00 34.83 4.30
1171 1223 1.074319 TAAACATCAGCGCGGTCGAC 61.074 55.000 8.38 7.13 38.10 4.20
1175 1227 0.320421 ACTGTAAACATCAGCGCGGT 60.320 50.000 4.23 4.23 36.50 5.68
1177 1229 1.067693 TCACTGTAAACATCAGCGCG 58.932 50.000 0.00 0.00 36.50 6.86
1178 1230 1.201812 CGTCACTGTAAACATCAGCGC 60.202 52.381 0.00 0.00 36.50 5.92
1181 1233 2.412870 TGGCGTCACTGTAAACATCAG 58.587 47.619 0.00 0.00 38.68 2.90
1182 1234 2.535012 TGGCGTCACTGTAAACATCA 57.465 45.000 0.00 0.00 0.00 3.07
1184 1236 3.312421 GCATATGGCGTCACTGTAAACAT 59.688 43.478 4.56 0.00 0.00 2.71
1198 1250 0.940126 CAGGTGAACGAGCATATGGC 59.060 55.000 4.56 0.00 45.30 4.40
1199 1251 0.940126 GCAGGTGAACGAGCATATGG 59.060 55.000 4.56 0.00 0.00 2.74
1216 1268 2.125147 GCTCCAGCATACCACGCA 60.125 61.111 0.00 0.00 41.59 5.24
1223 1275 1.798626 ATCACCAGAGCTCCAGCATA 58.201 50.000 10.93 0.00 45.16 3.14
1232 1284 0.543749 AACCCTGCTATCACCAGAGC 59.456 55.000 0.00 0.00 39.25 4.09
1234 1286 2.111384 GAGAACCCTGCTATCACCAGA 58.889 52.381 0.00 0.00 32.03 3.86
1238 1290 3.618690 AACTGAGAACCCTGCTATCAC 57.381 47.619 0.00 0.00 0.00 3.06
1266 1318 4.906618 GACATTCAAGTCCTAGTTTCCCA 58.093 43.478 0.00 0.00 32.36 4.37
1281 1333 1.486310 CCTCGAGGGAATGGACATTCA 59.514 52.381 24.62 5.01 46.77 2.57
1285 1337 2.367202 GGCCTCGAGGGAATGGACA 61.367 63.158 32.06 0.00 37.23 4.02
1342 1394 2.430694 GAGGCCCTGAAAAGTTGTTGTT 59.569 45.455 0.00 0.00 0.00 2.83
1367 1419 0.671472 CTGCTGCGAGATGTGTTCCA 60.671 55.000 0.00 0.00 0.00 3.53
1380 1432 2.540101 GGTTATGTACGTCATCTGCTGC 59.460 50.000 0.00 0.00 37.91 5.25
1381 1433 4.046938 AGGTTATGTACGTCATCTGCTG 57.953 45.455 0.00 0.00 37.91 4.41
1390 1442 3.026694 GGTCCAGGTAGGTTATGTACGT 58.973 50.000 0.00 0.00 39.02 3.57
1446 1498 1.270968 CGTCATGTTCGCGATGCTC 59.729 57.895 10.88 1.69 0.00 4.26
1488 8592 0.874175 CGCTGTCGAACTGGTTGTGA 60.874 55.000 0.00 0.00 38.10 3.58
1504 8608 2.690778 GCTGCACCGGAATTTCGCT 61.691 57.895 9.46 0.00 0.00 4.93
1517 8621 2.123769 AAGTGTTGCCCAGCTGCA 60.124 55.556 8.66 0.19 40.07 4.41
1563 8667 4.499183 GGACAGGACTTGATAGTGAGTTG 58.501 47.826 0.00 0.00 33.84 3.16
1587 8691 2.264166 GGAAGCGCTGCAGAGTCT 59.736 61.111 20.43 13.06 0.00 3.24
1607 8713 3.365265 GCCCGTGAAGTTGGCTGG 61.365 66.667 0.00 0.00 42.01 4.85
1609 8715 1.228552 ATTGCCCGTGAAGTTGGCT 60.229 52.632 3.84 0.00 45.56 4.75
1644 8750 1.597854 CACTTCTTGTCCAGCGGCA 60.598 57.895 1.45 0.00 0.00 5.69
1675 8781 2.963101 CCGAACATGTATCCTCACCCTA 59.037 50.000 0.00 0.00 0.00 3.53
1682 8788 2.420129 GGACAAGCCGAACATGTATCCT 60.420 50.000 0.00 0.00 28.28 3.24
1731 8837 0.109412 GATTGTGTGCAGCAGCTTCC 60.109 55.000 1.76 0.00 42.74 3.46
1746 8852 2.291365 TGATGGAGGCGTCATTGATTG 58.709 47.619 8.91 0.00 0.00 2.67
1747 8853 2.715749 TGATGGAGGCGTCATTGATT 57.284 45.000 8.91 0.00 0.00 2.57
1775 8881 0.529378 CCAAAGATGAACCCAGCTGC 59.471 55.000 8.66 0.00 38.21 5.25
1777 8883 0.779997 ACCCAAAGATGAACCCAGCT 59.220 50.000 0.00 0.00 41.44 4.24
1798 8904 1.073284 GGAAAGTAGAAGGCCACCACA 59.927 52.381 5.01 0.00 0.00 4.17
1967 9073 3.121279 CGTACTTCATTCTTGTGACCACG 59.879 47.826 0.00 0.00 0.00 4.94
2057 9170 8.234136 ACAAGATCAGATAAATGCACATCAAT 57.766 30.769 0.00 0.00 0.00 2.57
2067 9180 7.293073 AGCCCATTGTACAAGATCAGATAAAT 58.707 34.615 14.65 0.00 0.00 1.40
2116 9229 4.524318 CGGACCCGCGGCTAATGT 62.524 66.667 22.85 12.41 0.00 2.71
2118 9231 4.217159 GTCGGACCCGCGGCTAAT 62.217 66.667 22.85 4.01 39.59 1.73
2124 9237 3.869473 TTTTCCTGTCGGACCCGCG 62.869 63.158 5.55 0.00 39.60 6.46
2130 9243 1.885887 CCAAATGCTTTTCCTGTCGGA 59.114 47.619 0.00 0.00 37.60 4.55
2143 9256 6.346518 CCGAAAATTTTCTGTGTACCAAATGC 60.347 38.462 24.53 0.00 35.07 3.56
2167 9281 4.025480 CGTTAACACACACTACCAGAAACC 60.025 45.833 6.39 0.00 0.00 3.27
2184 9298 3.800506 CCATATCGGTGAACCTCGTTAAC 59.199 47.826 0.00 0.00 0.00 2.01
2185 9299 3.738899 GCCATATCGGTGAACCTCGTTAA 60.739 47.826 0.00 0.00 36.97 2.01
2186 9300 2.223876 GCCATATCGGTGAACCTCGTTA 60.224 50.000 0.00 0.00 36.97 3.18
2187 9301 1.472728 GCCATATCGGTGAACCTCGTT 60.473 52.381 0.00 0.00 36.97 3.85
2188 9302 0.104304 GCCATATCGGTGAACCTCGT 59.896 55.000 0.00 0.00 36.97 4.18
2190 9304 2.364324 TGTAGCCATATCGGTGAACCTC 59.636 50.000 0.00 0.00 36.97 3.85
2191 9305 2.394632 TGTAGCCATATCGGTGAACCT 58.605 47.619 0.00 0.00 36.97 3.50
2192 9306 2.902705 TGTAGCCATATCGGTGAACC 57.097 50.000 0.00 0.00 36.97 3.62
2194 9308 3.239449 AGGATGTAGCCATATCGGTGAA 58.761 45.455 0.00 0.00 36.97 3.18
2195 9309 2.826128 GAGGATGTAGCCATATCGGTGA 59.174 50.000 0.00 0.00 36.97 4.02
2198 9312 1.135139 CCGAGGATGTAGCCATATCGG 59.865 57.143 11.86 11.86 45.96 4.18
2199 9313 1.135139 CCCGAGGATGTAGCCATATCG 59.865 57.143 0.00 0.00 38.85 2.92
2200 9314 1.482593 CCCCGAGGATGTAGCCATATC 59.517 57.143 0.00 0.00 33.47 1.63
2201 9315 1.573108 CCCCGAGGATGTAGCCATAT 58.427 55.000 0.00 0.00 33.47 1.78
2202 9316 1.192146 GCCCCGAGGATGTAGCCATA 61.192 60.000 0.00 0.00 33.47 2.74
2204 9318 3.161450 GCCCCGAGGATGTAGCCA 61.161 66.667 0.00 0.00 33.47 4.75
2205 9319 3.942439 GGCCCCGAGGATGTAGCC 61.942 72.222 0.00 0.00 33.47 3.93
2206 9320 2.844839 AGGCCCCGAGGATGTAGC 60.845 66.667 0.00 0.00 33.47 3.58
2207 9321 1.457643 TCAGGCCCCGAGGATGTAG 60.458 63.158 0.00 0.00 33.47 2.74
2209 9323 2.238319 TAGTCAGGCCCCGAGGATGT 62.238 60.000 0.00 0.00 33.47 3.06
2210 9324 1.457643 TAGTCAGGCCCCGAGGATG 60.458 63.158 0.00 0.00 33.47 3.51
2211 9325 1.457831 GTAGTCAGGCCCCGAGGAT 60.458 63.158 0.00 0.00 33.47 3.24
2214 9328 3.528370 CCGTAGTCAGGCCCCGAG 61.528 72.222 0.00 0.00 0.00 4.63
2220 9334 4.874977 GAGCGCCCGTAGTCAGGC 62.875 72.222 2.29 0.00 46.17 4.85
2221 9335 4.208686 GGAGCGCCCGTAGTCAGG 62.209 72.222 2.29 0.00 0.00 3.86
2224 11161 3.902086 GGAGGAGCGCCCGTAGTC 61.902 72.222 2.29 0.00 40.87 2.59
2233 11170 4.436998 GTGTCACGGGGAGGAGCG 62.437 72.222 0.00 0.00 0.00 5.03
2234 11171 4.083862 GGTGTCACGGGGAGGAGC 62.084 72.222 0.00 0.00 0.00 4.70
2236 11173 4.608774 ACGGTGTCACGGGGAGGA 62.609 66.667 14.33 0.00 38.39 3.71
2247 11184 0.947180 GTGCGGTATTGTGACGGTGT 60.947 55.000 0.00 0.00 0.00 4.16
2248 11185 1.632046 GGTGCGGTATTGTGACGGTG 61.632 60.000 0.00 0.00 0.00 4.94
2249 11186 1.375013 GGTGCGGTATTGTGACGGT 60.375 57.895 0.00 0.00 0.00 4.83
2251 11188 2.104253 GGGGTGCGGTATTGTGACG 61.104 63.158 0.00 0.00 0.00 4.35
2254 11191 2.822255 CCGGGGTGCGGTATTGTG 60.822 66.667 0.00 0.00 0.00 3.33
2305 11242 0.531974 ATAATAGCACGGGCACACGG 60.532 55.000 14.57 0.00 44.61 4.94
2306 11243 2.143008 TATAATAGCACGGGCACACG 57.857 50.000 14.57 0.00 44.61 4.49
2310 11247 2.224646 TGCCAATATAATAGCACGGGCA 60.225 45.455 14.57 0.00 46.95 5.36
2311 11248 2.432444 TGCCAATATAATAGCACGGGC 58.568 47.619 0.00 0.00 40.51 6.13
2312 11249 4.816385 CCTATGCCAATATAATAGCACGGG 59.184 45.833 0.00 0.00 38.21 5.28
2313 11250 5.428253 ACCTATGCCAATATAATAGCACGG 58.572 41.667 0.00 0.00 38.21 4.94
2315 11252 8.786826 TGTAACCTATGCCAATATAATAGCAC 57.213 34.615 0.00 0.00 38.21 4.40
2316 11253 9.613428 GATGTAACCTATGCCAATATAATAGCA 57.387 33.333 0.00 0.00 40.00 3.49
2317 11254 8.765219 CGATGTAACCTATGCCAATATAATAGC 58.235 37.037 0.00 0.00 0.00 2.97
2318 11255 9.817809 ACGATGTAACCTATGCCAATATAATAG 57.182 33.333 0.00 0.00 0.00 1.73
2319 11256 9.594478 CACGATGTAACCTATGCCAATATAATA 57.406 33.333 0.00 0.00 0.00 0.98
2321 11258 7.386573 CACACGATGTAACCTATGCCAATATAA 59.613 37.037 0.00 0.00 0.00 0.98
2322 11259 6.871492 CACACGATGTAACCTATGCCAATATA 59.129 38.462 0.00 0.00 0.00 0.86
2324 11261 5.053811 CACACGATGTAACCTATGCCAATA 58.946 41.667 0.00 0.00 0.00 1.90
2330 11267 5.279384 GGTAGACACACGATGTAACCTATG 58.721 45.833 15.25 0.00 43.56 2.23
2331 11268 4.340381 GGGTAGACACACGATGTAACCTAT 59.660 45.833 18.81 0.00 43.56 2.57
2333 11270 2.494870 GGGTAGACACACGATGTAACCT 59.505 50.000 18.81 8.15 43.56 3.50
2334 11271 2.417787 GGGGTAGACACACGATGTAACC 60.418 54.545 14.65 14.65 43.56 2.85
2337 11274 2.519771 AGGGGTAGACACACGATGTA 57.480 50.000 0.00 0.00 43.56 2.29
2339 11276 2.376109 AGTAGGGGTAGACACACGATG 58.624 52.381 0.00 0.00 0.00 3.84
2341 11278 3.939740 ATAGTAGGGGTAGACACACGA 57.060 47.619 0.00 0.00 0.00 4.35
2343 11280 8.327271 TCTCATATATAGTAGGGGTAGACACAC 58.673 40.741 0.00 0.00 0.00 3.82
2344 11281 8.458951 TCTCATATATAGTAGGGGTAGACACA 57.541 38.462 0.00 0.00 0.00 3.72
2345 11282 7.994334 CCTCTCATATATAGTAGGGGTAGACAC 59.006 44.444 5.27 0.00 0.00 3.67
2346 11283 7.366642 GCCTCTCATATATAGTAGGGGTAGACA 60.367 44.444 12.47 0.00 0.00 3.41
2347 11284 6.999871 GCCTCTCATATATAGTAGGGGTAGAC 59.000 46.154 12.47 0.00 0.00 2.59
2351 11288 6.424826 AAGCCTCTCATATATAGTAGGGGT 57.575 41.667 12.47 7.33 0.00 4.95
2352 11289 7.007723 CCTAAGCCTCTCATATATAGTAGGGG 58.992 46.154 8.19 8.19 0.00 4.79
2360 11297 8.976353 CACTTGTATCCTAAGCCTCTCATATAT 58.024 37.037 0.00 0.00 0.00 0.86
2362 11299 6.784969 ACACTTGTATCCTAAGCCTCTCATAT 59.215 38.462 0.00 0.00 0.00 1.78
2364 11301 4.965532 ACACTTGTATCCTAAGCCTCTCAT 59.034 41.667 0.00 0.00 0.00 2.90
2365 11302 4.353777 ACACTTGTATCCTAAGCCTCTCA 58.646 43.478 0.00 0.00 0.00 3.27
2366 11303 4.202172 GGACACTTGTATCCTAAGCCTCTC 60.202 50.000 0.00 0.00 31.75 3.20
2367 11304 3.707102 GGACACTTGTATCCTAAGCCTCT 59.293 47.826 0.00 0.00 31.75 3.69
2368 11305 3.707102 AGGACACTTGTATCCTAAGCCTC 59.293 47.826 0.00 0.00 43.85 4.70
2369 11306 3.725634 AGGACACTTGTATCCTAAGCCT 58.274 45.455 0.00 0.00 43.85 4.58
2393 12524 2.111255 ACAGGGTAGGAGTTGTGTCCTA 59.889 50.000 0.00 0.00 45.83 2.94
2395 12526 1.275573 GACAGGGTAGGAGTTGTGTCC 59.724 57.143 0.00 0.00 36.79 4.02
2396 12527 2.249139 AGACAGGGTAGGAGTTGTGTC 58.751 52.381 0.00 0.00 35.57 3.67
2399 12530 3.537795 TGTAGACAGGGTAGGAGTTGT 57.462 47.619 0.00 0.00 0.00 3.32
2401 12532 5.202004 CTGTATGTAGACAGGGTAGGAGTT 58.798 45.833 0.00 0.00 42.68 3.01
2402 12533 4.794334 CTGTATGTAGACAGGGTAGGAGT 58.206 47.826 0.00 0.00 42.68 3.85
2413 12544 5.353678 ACTTGGAGTCGTACTGTATGTAGAC 59.646 44.000 6.90 7.11 33.51 2.59
2414 12545 5.494724 ACTTGGAGTCGTACTGTATGTAGA 58.505 41.667 6.90 0.00 0.00 2.59
2415 12546 5.220815 GGACTTGGAGTCGTACTGTATGTAG 60.221 48.000 6.90 0.76 45.96 2.74
2416 12547 4.637534 GGACTTGGAGTCGTACTGTATGTA 59.362 45.833 6.90 0.00 45.96 2.29
2417 12548 3.442977 GGACTTGGAGTCGTACTGTATGT 59.557 47.826 6.90 0.00 45.96 2.29
2418 12549 3.442625 TGGACTTGGAGTCGTACTGTATG 59.557 47.826 0.47 0.47 45.96 2.39
2420 12551 3.144657 TGGACTTGGAGTCGTACTGTA 57.855 47.619 2.33 0.00 45.96 2.74
2421 12552 1.991121 TGGACTTGGAGTCGTACTGT 58.009 50.000 2.33 0.00 45.96 3.55
2423 12554 2.296471 CAGTTGGACTTGGAGTCGTACT 59.704 50.000 2.33 5.31 45.96 2.73
2424 12555 2.035576 ACAGTTGGACTTGGAGTCGTAC 59.964 50.000 2.33 3.38 45.96 3.67
2425 12556 2.313317 ACAGTTGGACTTGGAGTCGTA 58.687 47.619 2.33 0.00 45.96 3.43
2426 12557 1.120530 ACAGTTGGACTTGGAGTCGT 58.879 50.000 2.33 0.00 45.96 4.34
2427 12558 3.057734 GTTACAGTTGGACTTGGAGTCG 58.942 50.000 2.33 0.00 45.96 4.18
2429 12560 3.046374 AGGTTACAGTTGGACTTGGAGT 58.954 45.455 0.00 0.00 0.00 3.85
2430 12561 3.771577 AGGTTACAGTTGGACTTGGAG 57.228 47.619 0.00 0.00 0.00 3.86
2431 12562 4.657039 AGTTAGGTTACAGTTGGACTTGGA 59.343 41.667 0.00 0.00 0.00 3.53
2434 12565 5.997843 ACAAGTTAGGTTACAGTTGGACTT 58.002 37.500 0.00 0.00 0.00 3.01
2436 12567 6.282930 TGTACAAGTTAGGTTACAGTTGGAC 58.717 40.000 0.00 0.00 37.59 4.02
2437 12568 6.482898 TGTACAAGTTAGGTTACAGTTGGA 57.517 37.500 0.00 0.00 0.00 3.53
2438 12569 7.739498 ATTGTACAAGTTAGGTTACAGTTGG 57.261 36.000 14.65 0.00 0.00 3.77
2452 12583 9.431887 AGTTGTGTCGAATATTATTGTACAAGT 57.568 29.630 14.65 5.42 0.00 3.16
2453 12584 9.901724 GAGTTGTGTCGAATATTATTGTACAAG 57.098 33.333 14.65 0.00 0.00 3.16
2454 12585 9.647797 AGAGTTGTGTCGAATATTATTGTACAA 57.352 29.630 11.41 11.41 0.00 2.41
2458 12589 9.647797 TGTTAGAGTTGTGTCGAATATTATTGT 57.352 29.630 0.00 0.00 0.00 2.71
2463 12594 8.603242 AGTTTGTTAGAGTTGTGTCGAATATT 57.397 30.769 0.00 0.00 0.00 1.28
2465 12596 6.643770 GGAGTTTGTTAGAGTTGTGTCGAATA 59.356 38.462 0.00 0.00 0.00 1.75
2469 12600 4.025979 GTGGAGTTTGTTAGAGTTGTGTCG 60.026 45.833 0.00 0.00 0.00 4.35
2470 12601 4.272748 GGTGGAGTTTGTTAGAGTTGTGTC 59.727 45.833 0.00 0.00 0.00 3.67
2471 12602 4.080526 AGGTGGAGTTTGTTAGAGTTGTGT 60.081 41.667 0.00 0.00 0.00 3.72
2473 12604 4.772886 AGGTGGAGTTTGTTAGAGTTGT 57.227 40.909 0.00 0.00 0.00 3.32
2474 12605 4.275936 CCAAGGTGGAGTTTGTTAGAGTTG 59.724 45.833 0.00 0.00 40.96 3.16
2475 12606 4.461198 CCAAGGTGGAGTTTGTTAGAGTT 58.539 43.478 0.00 0.00 40.96 3.01
2476 12607 3.747708 GCCAAGGTGGAGTTTGTTAGAGT 60.748 47.826 0.00 0.00 40.96 3.24
2477 12608 2.814336 GCCAAGGTGGAGTTTGTTAGAG 59.186 50.000 0.00 0.00 40.96 2.43
2478 12609 2.808933 CGCCAAGGTGGAGTTTGTTAGA 60.809 50.000 0.00 0.00 40.96 2.10
2479 12610 1.535462 CGCCAAGGTGGAGTTTGTTAG 59.465 52.381 0.00 0.00 40.96 2.34
2480 12611 1.141254 TCGCCAAGGTGGAGTTTGTTA 59.859 47.619 0.00 0.00 40.96 2.41
2481 12612 0.106918 TCGCCAAGGTGGAGTTTGTT 60.107 50.000 0.00 0.00 40.96 2.83
2482 12613 0.106918 TTCGCCAAGGTGGAGTTTGT 60.107 50.000 0.00 0.00 40.96 2.83
2483 12614 1.247567 ATTCGCCAAGGTGGAGTTTG 58.752 50.000 0.00 0.00 40.96 2.93
2484 12615 2.871096 TATTCGCCAAGGTGGAGTTT 57.129 45.000 0.00 0.00 40.96 2.66
2486 12617 2.505819 AGAATATTCGCCAAGGTGGAGT 59.494 45.455 9.78 0.00 40.96 3.85
2487 12618 3.134458 GAGAATATTCGCCAAGGTGGAG 58.866 50.000 9.78 0.00 40.96 3.86
2488 12619 2.158813 GGAGAATATTCGCCAAGGTGGA 60.159 50.000 27.56 0.00 45.20 4.02
2489 12620 2.222027 GGAGAATATTCGCCAAGGTGG 58.778 52.381 27.56 0.00 45.20 4.61
2497 12628 2.614057 CAAGGTGGTGGAGAATATTCGC 59.386 50.000 10.44 10.44 0.00 4.70
2499 12630 6.238484 CGAATTCAAGGTGGTGGAGAATATTC 60.238 42.308 7.41 7.41 0.00 1.75
2500 12631 5.590259 CGAATTCAAGGTGGTGGAGAATATT 59.410 40.000 6.22 0.00 0.00 1.28
2501 12632 5.126067 CGAATTCAAGGTGGTGGAGAATAT 58.874 41.667 6.22 0.00 0.00 1.28
2503 12634 3.244911 ACGAATTCAAGGTGGTGGAGAAT 60.245 43.478 6.22 0.00 0.00 2.40
2504 12635 2.105821 ACGAATTCAAGGTGGTGGAGAA 59.894 45.455 6.22 0.00 0.00 2.87
2506 12637 2.076863 GACGAATTCAAGGTGGTGGAG 58.923 52.381 6.22 0.00 0.00 3.86
2507 12638 1.271163 GGACGAATTCAAGGTGGTGGA 60.271 52.381 6.22 0.00 0.00 4.02
2508 12639 1.165270 GGACGAATTCAAGGTGGTGG 58.835 55.000 6.22 0.00 0.00 4.61
2509 12640 0.796312 CGGACGAATTCAAGGTGGTG 59.204 55.000 6.22 0.00 0.00 4.17
2510 12641 0.395312 ACGGACGAATTCAAGGTGGT 59.605 50.000 6.22 0.00 0.00 4.16
2511 12642 0.796312 CACGGACGAATTCAAGGTGG 59.204 55.000 6.22 0.00 0.00 4.61
2512 12643 0.165944 GCACGGACGAATTCAAGGTG 59.834 55.000 6.22 8.58 0.00 4.00
2513 12644 1.289109 CGCACGGACGAATTCAAGGT 61.289 55.000 6.22 0.00 34.06 3.50
2514 12645 1.289109 ACGCACGGACGAATTCAAGG 61.289 55.000 6.22 0.00 36.70 3.61
2515 12646 0.093026 GACGCACGGACGAATTCAAG 59.907 55.000 6.22 0.00 36.70 3.02
2516 12647 1.610715 CGACGCACGGACGAATTCAA 61.611 55.000 6.22 0.00 38.46 2.69
2517 12648 2.084101 CGACGCACGGACGAATTCA 61.084 57.895 6.22 0.00 38.46 2.57
2518 12649 1.339235 TTCGACGCACGGACGAATTC 61.339 55.000 17.85 0.00 40.26 2.17
2519 12650 1.372004 TTCGACGCACGGACGAATT 60.372 52.632 17.85 0.00 40.26 2.17
2520 12651 2.084681 GTTCGACGCACGGACGAAT 61.085 57.895 22.01 0.00 45.16 3.34
2521 12652 2.726912 GTTCGACGCACGGACGAA 60.727 61.111 17.85 17.85 40.77 3.85
2526 12657 1.289109 ATTGAAGGTTCGACGCACGG 61.289 55.000 3.02 0.00 42.82 4.94
2528 12659 0.865769 ACATTGAAGGTTCGACGCAC 59.134 50.000 0.00 0.00 0.00 5.34
2529 12660 2.063266 GTACATTGAAGGTTCGACGCA 58.937 47.619 0.00 0.00 0.00 5.24
2531 12662 4.921470 AATGTACATTGAAGGTTCGACG 57.079 40.909 20.19 0.00 0.00 5.12
2543 12674 5.523916 GCGTATCTCAAGTCCAATGTACATT 59.476 40.000 15.47 15.47 0.00 2.71
2544 12675 5.050490 GCGTATCTCAAGTCCAATGTACAT 58.950 41.667 1.41 1.41 0.00 2.29
2546 12677 3.802685 GGCGTATCTCAAGTCCAATGTAC 59.197 47.826 0.00 0.00 0.00 2.90
2547 12678 3.449377 TGGCGTATCTCAAGTCCAATGTA 59.551 43.478 0.00 0.00 0.00 2.29
2549 12680 2.905075 TGGCGTATCTCAAGTCCAATG 58.095 47.619 0.00 0.00 0.00 2.82
2550 12681 3.134623 TCATGGCGTATCTCAAGTCCAAT 59.865 43.478 0.00 0.00 0.00 3.16
2551 12682 2.499693 TCATGGCGTATCTCAAGTCCAA 59.500 45.455 0.00 0.00 0.00 3.53
2552 12683 2.101415 CTCATGGCGTATCTCAAGTCCA 59.899 50.000 0.00 0.00 0.00 4.02
2553 12684 2.748605 CTCATGGCGTATCTCAAGTCC 58.251 52.381 0.00 0.00 0.00 3.85
2555 12686 1.482182 TGCTCATGGCGTATCTCAAGT 59.518 47.619 0.00 0.00 45.43 3.16
2557 12688 1.473257 GGTGCTCATGGCGTATCTCAA 60.473 52.381 0.00 0.00 45.43 3.02
2559 12690 0.941463 CGGTGCTCATGGCGTATCTC 60.941 60.000 0.00 0.00 45.43 2.75
2560 12691 1.068083 CGGTGCTCATGGCGTATCT 59.932 57.895 0.00 0.00 45.43 1.98
2561 12692 2.598632 GCGGTGCTCATGGCGTATC 61.599 63.158 0.00 0.00 45.43 2.24
2562 12693 2.588877 GCGGTGCTCATGGCGTAT 60.589 61.111 0.00 0.00 45.43 3.06
2563 12694 3.770040 AGCGGTGCTCATGGCGTA 61.770 61.111 0.00 0.00 45.43 4.42
2573 12704 2.507110 TCTGGAAGTAGCAGCGGTGC 62.507 60.000 31.22 31.22 42.67 5.01
2574 12705 0.737715 GTCTGGAAGTAGCAGCGGTG 60.738 60.000 10.98 10.98 33.76 4.94
2575 12706 0.900647 AGTCTGGAAGTAGCAGCGGT 60.901 55.000 0.00 0.00 33.76 5.68
2576 12707 0.179124 GAGTCTGGAAGTAGCAGCGG 60.179 60.000 0.00 0.00 33.76 5.52
2577 12708 0.179124 GGAGTCTGGAAGTAGCAGCG 60.179 60.000 0.00 0.00 33.76 5.18
2578 12709 0.898320 TGGAGTCTGGAAGTAGCAGC 59.102 55.000 0.00 0.00 33.76 5.25
2580 12711 2.234661 CACATGGAGTCTGGAAGTAGCA 59.765 50.000 0.00 0.00 33.76 3.49
2581 12712 2.497675 TCACATGGAGTCTGGAAGTAGC 59.502 50.000 0.00 0.00 33.76 3.58
2584 12715 2.614259 AGTCACATGGAGTCTGGAAGT 58.386 47.619 0.00 0.00 33.76 3.01
2585 12716 3.007290 TGAAGTCACATGGAGTCTGGAAG 59.993 47.826 0.00 0.00 0.00 3.46
2588 12719 2.693069 GTGAAGTCACATGGAGTCTGG 58.307 52.381 6.57 0.00 45.75 3.86
2599 12730 1.668419 ACAGTTGCAGGTGAAGTCAC 58.332 50.000 2.69 2.69 45.72 3.67
2601 12732 3.060602 GACTACAGTTGCAGGTGAAGTC 58.939 50.000 4.49 4.92 0.00 3.01
2602 12733 2.224305 GGACTACAGTTGCAGGTGAAGT 60.224 50.000 4.49 0.00 0.00 3.01
2603 12734 2.417719 GGACTACAGTTGCAGGTGAAG 58.582 52.381 4.49 0.00 0.00 3.02
2604 12735 1.071699 GGGACTACAGTTGCAGGTGAA 59.928 52.381 4.49 0.00 0.00 3.18
2605 12736 0.685097 GGGACTACAGTTGCAGGTGA 59.315 55.000 4.49 0.00 0.00 4.02
2606 12737 0.687354 AGGGACTACAGTTGCAGGTG 59.313 55.000 0.00 0.00 36.02 4.00
2607 12738 1.348036 GAAGGGACTACAGTTGCAGGT 59.652 52.381 0.00 0.00 38.49 4.00
2608 12739 1.625818 AGAAGGGACTACAGTTGCAGG 59.374 52.381 0.00 0.00 38.49 4.85
2609 12740 3.070018 CAAGAAGGGACTACAGTTGCAG 58.930 50.000 0.00 0.00 38.49 4.41
2610 12741 2.438021 ACAAGAAGGGACTACAGTTGCA 59.562 45.455 0.00 0.00 38.49 4.08
2611 12742 3.067833 GACAAGAAGGGACTACAGTTGC 58.932 50.000 0.00 0.00 38.49 4.17
2613 12744 4.902448 AGAAGACAAGAAGGGACTACAGTT 59.098 41.667 0.00 0.00 38.49 3.16
2614 12745 4.484912 AGAAGACAAGAAGGGACTACAGT 58.515 43.478 0.00 0.00 38.49 3.55
2615 12746 5.011125 TGAAGAAGACAAGAAGGGACTACAG 59.989 44.000 0.00 0.00 38.49 2.74
2616 12747 4.899457 TGAAGAAGACAAGAAGGGACTACA 59.101 41.667 0.00 0.00 38.49 2.74
2617 12748 5.221461 TGTGAAGAAGACAAGAAGGGACTAC 60.221 44.000 0.00 0.00 38.49 2.73
2618 12749 4.899457 TGTGAAGAAGACAAGAAGGGACTA 59.101 41.667 0.00 0.00 38.49 2.59
2619 12750 5.163152 ATTGTGAAGAAGACAAGAAGGGACT 60.163 40.000 0.00 0.00 37.15 3.85
2620 12751 4.073293 TGTGAAGAAGACAAGAAGGGAC 57.927 45.455 0.00 0.00 0.00 4.46
2621 12752 4.771114 TTGTGAAGAAGACAAGAAGGGA 57.229 40.909 0.00 0.00 0.00 4.20
2622 12753 5.065914 TGATTGTGAAGAAGACAAGAAGGG 58.934 41.667 0.00 0.00 36.77 3.95
2623 12754 6.038603 TGTTGATTGTGAAGAAGACAAGAAGG 59.961 38.462 0.00 0.00 36.77 3.46
2624 12755 6.909357 GTGTTGATTGTGAAGAAGACAAGAAG 59.091 38.462 0.00 0.00 36.77 2.85
2625 12756 6.599244 AGTGTTGATTGTGAAGAAGACAAGAA 59.401 34.615 0.00 0.00 36.77 2.52
2626 12757 6.115446 AGTGTTGATTGTGAAGAAGACAAGA 58.885 36.000 0.00 0.00 36.77 3.02
2627 12758 6.369059 AGTGTTGATTGTGAAGAAGACAAG 57.631 37.500 0.00 0.00 36.77 3.16
2629 12760 4.507756 CGAGTGTTGATTGTGAAGAAGACA 59.492 41.667 0.00 0.00 0.00 3.41
2630 12761 4.745125 TCGAGTGTTGATTGTGAAGAAGAC 59.255 41.667 0.00 0.00 0.00 3.01
2631 12762 4.944048 TCGAGTGTTGATTGTGAAGAAGA 58.056 39.130 0.00 0.00 0.00 2.87
2634 12765 3.059884 GCTCGAGTGTTGATTGTGAAGA 58.940 45.455 15.13 0.00 0.00 2.87
2637 12768 2.524569 TGCTCGAGTGTTGATTGTGA 57.475 45.000 15.13 0.00 0.00 3.58
2638 12769 3.607422 TTTGCTCGAGTGTTGATTGTG 57.393 42.857 15.13 0.00 0.00 3.33
2639 12770 4.836125 ATTTTGCTCGAGTGTTGATTGT 57.164 36.364 15.13 0.00 0.00 2.71
2640 12771 6.857964 ACTTAATTTTGCTCGAGTGTTGATTG 59.142 34.615 15.13 1.11 0.00 2.67
2641 12772 6.970484 ACTTAATTTTGCTCGAGTGTTGATT 58.030 32.000 15.13 10.52 0.00 2.57
2643 12774 6.371809 AACTTAATTTTGCTCGAGTGTTGA 57.628 33.333 15.13 0.00 0.00 3.18
2644 12775 5.625311 GGAACTTAATTTTGCTCGAGTGTTG 59.375 40.000 15.13 0.00 0.00 3.33
2645 12776 5.531287 AGGAACTTAATTTTGCTCGAGTGTT 59.469 36.000 15.13 4.93 27.25 3.32
2647 12778 5.179368 TGAGGAACTTAATTTTGCTCGAGTG 59.821 40.000 15.13 0.00 42.63 3.51
2648 12779 5.179555 GTGAGGAACTTAATTTTGCTCGAGT 59.820 40.000 15.13 0.00 42.63 4.18
2649 12780 5.409826 AGTGAGGAACTTAATTTTGCTCGAG 59.590 40.000 8.45 8.45 42.63 4.04
2650 12781 5.305585 AGTGAGGAACTTAATTTTGCTCGA 58.694 37.500 11.47 0.00 42.63 4.04
2652 12783 7.674471 AGTAGTGAGGAACTTAATTTTGCTC 57.326 36.000 10.05 10.05 41.55 4.26
2653 12784 7.674471 GAGTAGTGAGGAACTTAATTTTGCT 57.326 36.000 0.00 0.00 41.55 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.