Multiple sequence alignment - TraesCS3B01G433200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G433200 chr3B 100.000 5489 0 0 1 5489 672108614 672103126 0.000000e+00 10137.0
1 TraesCS3B01G433200 chr3B 86.701 767 82 5 1 747 723492229 723491463 0.000000e+00 833.0
2 TraesCS3B01G433200 chr3B 94.231 52 3 0 4511 4562 672104058 672104007 4.560000e-11 80.5
3 TraesCS3B01G433200 chr3B 94.231 52 3 0 4557 4608 672104104 672104053 4.560000e-11 80.5
4 TraesCS3B01G433200 chr3D 91.507 3297 163 46 2263 5478 509255108 509251848 0.000000e+00 4429.0
5 TraesCS3B01G433200 chr3D 91.774 1398 80 16 864 2250 509256569 509255196 0.000000e+00 1912.0
6 TraesCS3B01G433200 chr3D 92.593 81 5 1 1760 1840 547439737 547439658 1.250000e-21 115.0
7 TraesCS3B01G433200 chr3A 95.146 2678 103 8 1900 4562 646857372 646854707 0.000000e+00 4200.0
8 TraesCS3B01G433200 chr3A 89.480 884 48 17 890 1767 646859854 646859010 0.000000e+00 1075.0
9 TraesCS3B01G433200 chr3A 84.726 766 87 14 1 747 646861520 646860766 0.000000e+00 739.0
10 TraesCS3B01G433200 chr3A 82.591 741 64 25 4557 5248 646854758 646854034 1.320000e-165 593.0
11 TraesCS3B01G433200 chr3A 91.489 141 6 3 5344 5482 646852439 646852303 7.260000e-44 189.0
12 TraesCS3B01G433200 chr3A 96.000 75 3 0 1763 1837 697244684 697244758 7.470000e-24 122.0
13 TraesCS3B01G433200 chr7A 96.154 78 3 0 1763 1840 39313365 39313442 1.600000e-25 128.0
14 TraesCS3B01G433200 chr7A 92.941 85 5 1 1756 1840 501160841 501160924 7.470000e-24 122.0
15 TraesCS3B01G433200 chr4B 96.000 75 3 0 1763 1837 188176812 188176886 7.470000e-24 122.0
16 TraesCS3B01G433200 chrUn 93.750 80 5 0 1761 1840 362465798 362465877 2.690000e-23 121.0
17 TraesCS3B01G433200 chrUn 92.593 81 6 0 1760 1840 124699920 124699840 3.470000e-22 117.0
18 TraesCS3B01G433200 chr1D 89.773 88 8 1 1754 1840 412079050 412079137 1.620000e-20 111.0
19 TraesCS3B01G433200 chr1D 90.909 77 4 2 746 819 249561596 249561672 3.500000e-17 100.0
20 TraesCS3B01G433200 chr1D 90.667 75 5 1 746 818 433912603 433912677 1.260000e-16 99.0
21 TraesCS3B01G433200 chr1D 89.474 76 8 0 745 820 5514359 5514434 4.530000e-16 97.1
22 TraesCS3B01G433200 chr1D 89.610 77 7 1 742 818 370323732 370323657 4.530000e-16 97.1
23 TraesCS3B01G433200 chr4D 91.892 74 5 1 745 818 15786270 15786198 9.730000e-18 102.0
24 TraesCS3B01G433200 chr7D 91.781 73 5 1 746 818 5307665 5307736 3.500000e-17 100.0
25 TraesCS3B01G433200 chr2B 89.873 79 7 1 741 818 417500759 417500837 3.500000e-17 100.0
26 TraesCS3B01G433200 chr2B 90.789 76 6 1 746 821 646215314 646215388 3.500000e-17 100.0
27 TraesCS3B01G433200 chr6D 88.750 80 8 1 746 824 157373751 157373830 4.530000e-16 97.1
28 TraesCS3B01G433200 chr7B 93.333 45 3 0 5207 5251 111309540 111309584 3.550000e-07 67.6
29 TraesCS3B01G433200 chr2D 94.737 38 2 0 599 636 517771002 517771039 5.940000e-05 60.2
30 TraesCS3B01G433200 chr5D 89.583 48 2 3 602 648 291535070 291535025 2.140000e-04 58.4
31 TraesCS3B01G433200 chr5A 96.875 32 1 0 5210 5241 611648220 611648251 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G433200 chr3B 672103126 672108614 5488 True 10137.0 10137 100.0000 1 5489 1 chr3B.!!$R1 5488
1 TraesCS3B01G433200 chr3B 723491463 723492229 766 True 833.0 833 86.7010 1 747 1 chr3B.!!$R2 746
2 TraesCS3B01G433200 chr3D 509251848 509256569 4721 True 3170.5 4429 91.6405 864 5478 2 chr3D.!!$R2 4614
3 TraesCS3B01G433200 chr3A 646852303 646861520 9217 True 1359.2 4200 88.6864 1 5482 5 chr3A.!!$R1 5481

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
888 1002 0.097674 CTTGCTTGAGGGCGAATTCG 59.902 55.0 23.34 23.34 43.27 3.34 F
1413 2276 0.030638 ACAACTTGGTTGATGCGTGC 59.969 50.0 15.89 0.00 45.28 5.34 F
2164 4633 0.908198 GCTGATCTTCACCACCCTCT 59.092 55.0 0.00 0.00 0.00 3.69 F
3123 5667 0.179009 TTCTGAAGCAGCAGCACCTT 60.179 50.0 3.17 0.00 45.49 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1836 2705 0.037303 TTCTACTCCCTCCGTCGTGT 59.963 55.0 0.0 0.0 0.00 4.49 R
3083 5627 0.037790 AGTTCTCTTCAGCACTCGGC 60.038 55.0 0.0 0.0 45.30 5.54 R
3959 6503 1.051008 ATGTCATGGATGCGAGGCTA 58.949 50.0 0.0 0.0 0.00 3.93 R
4557 7159 0.234884 GCCGAAATATAGCACGGTGC 59.765 55.0 25.0 25.0 45.91 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 23 4.308458 TGCCGGTCAACCTGGACG 62.308 66.667 1.90 0.00 38.70 4.79
29 31 1.117150 TCAACCTGGACGTATAGGGC 58.883 55.000 18.65 0.00 38.42 5.19
43 45 4.035102 GGGCCGGTTTGAGGAGCT 62.035 66.667 1.90 0.00 0.00 4.09
92 94 3.450115 GACCGGGTCGTCCTCCTG 61.450 72.222 12.12 0.00 0.00 3.86
106 108 4.298103 TCCTCCTGGACGTATATAGGAC 57.702 50.000 9.36 3.15 37.46 3.85
124 126 3.299340 GACGTTTGAGAAGTCCAGCTA 57.701 47.619 0.00 0.00 0.00 3.32
136 138 4.870123 AGTCCAGCTATAGATGCTCTTG 57.130 45.455 12.62 0.00 38.92 3.02
161 163 0.391130 CATGATGGGGTGTTCGTCGT 60.391 55.000 0.00 0.00 0.00 4.34
182 184 1.823169 TTGCCTTAGGGAGCGAACGT 61.823 55.000 0.00 0.00 33.58 3.99
184 186 1.226603 CCTTAGGGAGCGAACGTCG 60.227 63.158 0.00 0.00 37.64 5.12
192 194 1.606350 GAGCGAACGTCGTCAACCTG 61.606 60.000 0.00 0.00 42.81 4.00
213 215 1.280998 TCTTCCTTCCCGATTGTTCCC 59.719 52.381 0.00 0.00 0.00 3.97
221 223 1.768870 CCCGATTGTTCCCCTATGTCT 59.231 52.381 0.00 0.00 0.00 3.41
251 253 6.042093 CCTCATCACTTTCTATACCCTTGCTA 59.958 42.308 0.00 0.00 0.00 3.49
256 258 5.817816 CACTTTCTATACCCTTGCTACCTTG 59.182 44.000 0.00 0.00 0.00 3.61
280 282 4.271291 TCTCGTCTATCGTTGTCTCTCATG 59.729 45.833 0.00 0.00 40.80 3.07
295 297 3.095332 TCTCATGTGTCCTTCCTCTCTG 58.905 50.000 0.00 0.00 0.00 3.35
300 302 0.411452 TGTCCTTCCTCTCTGGCTCT 59.589 55.000 0.00 0.00 35.26 4.09
319 321 4.870991 GCTCTAACACTTCCCACTCATTAC 59.129 45.833 0.00 0.00 0.00 1.89
321 323 4.841813 TCTAACACTTCCCACTCATTACCA 59.158 41.667 0.00 0.00 0.00 3.25
324 326 4.589908 ACACTTCCCACTCATTACCATTC 58.410 43.478 0.00 0.00 0.00 2.67
325 327 4.042809 ACACTTCCCACTCATTACCATTCA 59.957 41.667 0.00 0.00 0.00 2.57
326 328 4.396166 CACTTCCCACTCATTACCATTCAC 59.604 45.833 0.00 0.00 0.00 3.18
345 348 7.908082 CCATTCACGGTATATTTATTATTGCCG 59.092 37.037 0.00 0.00 40.47 5.69
386 390 0.527817 AGCACGCTCGTATAACCTGC 60.528 55.000 0.00 0.00 0.00 4.85
429 433 4.394439 TGCAGTACGGCTCATGTAATTA 57.606 40.909 18.82 0.00 34.04 1.40
492 496 9.556030 CTTTGCATGCTCATATATTTGTATCAG 57.444 33.333 20.33 0.00 0.00 2.90
597 604 9.072375 TGACATATTGAATACTACTCTCTCCTG 57.928 37.037 0.00 0.00 0.00 3.86
607 614 5.826643 ACTACTCTCTCCTGAAGTTGAGAT 58.173 41.667 0.00 0.00 37.03 2.75
629 636 2.025699 CCTTATTTTGGGACGGAGGGAA 60.026 50.000 0.00 0.00 0.00 3.97
632 639 5.457633 CCTTATTTTGGGACGGAGGGAATAT 60.458 44.000 0.00 0.00 0.00 1.28
673 696 9.558396 AAATTCAGAATAGCTAGAATCTTCCAG 57.442 33.333 0.00 0.00 30.87 3.86
747 770 6.610741 ACTTGAGTGCTTCAAAGTTTCTAG 57.389 37.500 5.87 0.00 44.84 2.43
748 771 6.116126 ACTTGAGTGCTTCAAAGTTTCTAGT 58.884 36.000 5.87 0.00 44.84 2.57
750 773 5.057149 TGAGTGCTTCAAAGTTTCTAGTCC 58.943 41.667 0.00 0.00 31.34 3.85
751 774 4.390264 AGTGCTTCAAAGTTTCTAGTCCC 58.610 43.478 0.00 0.00 0.00 4.46
752 775 4.103311 AGTGCTTCAAAGTTTCTAGTCCCT 59.897 41.667 0.00 0.00 0.00 4.20
753 776 4.452795 GTGCTTCAAAGTTTCTAGTCCCTC 59.547 45.833 0.00 0.00 0.00 4.30
754 777 4.004314 GCTTCAAAGTTTCTAGTCCCTCC 58.996 47.826 0.00 0.00 0.00 4.30
755 778 3.955650 TCAAAGTTTCTAGTCCCTCCG 57.044 47.619 0.00 0.00 0.00 4.63
756 779 3.236896 TCAAAGTTTCTAGTCCCTCCGT 58.763 45.455 0.00 0.00 0.00 4.69
757 780 3.644738 TCAAAGTTTCTAGTCCCTCCGTT 59.355 43.478 0.00 0.00 0.00 4.44
758 781 3.957591 AAGTTTCTAGTCCCTCCGTTC 57.042 47.619 0.00 0.00 0.00 3.95
759 782 2.177734 AGTTTCTAGTCCCTCCGTTCC 58.822 52.381 0.00 0.00 0.00 3.62
760 783 1.897802 GTTTCTAGTCCCTCCGTTCCA 59.102 52.381 0.00 0.00 0.00 3.53
761 784 2.500504 GTTTCTAGTCCCTCCGTTCCAT 59.499 50.000 0.00 0.00 0.00 3.41
762 785 3.675348 TTCTAGTCCCTCCGTTCCATA 57.325 47.619 0.00 0.00 0.00 2.74
763 786 3.675348 TCTAGTCCCTCCGTTCCATAA 57.325 47.619 0.00 0.00 0.00 1.90
764 787 4.194678 TCTAGTCCCTCCGTTCCATAAT 57.805 45.455 0.00 0.00 0.00 1.28
765 788 5.329191 TCTAGTCCCTCCGTTCCATAATA 57.671 43.478 0.00 0.00 0.00 0.98
766 789 5.075493 TCTAGTCCCTCCGTTCCATAATAC 58.925 45.833 0.00 0.00 0.00 1.89
767 790 3.649843 AGTCCCTCCGTTCCATAATACA 58.350 45.455 0.00 0.00 0.00 2.29
768 791 4.035112 AGTCCCTCCGTTCCATAATACAA 58.965 43.478 0.00 0.00 0.00 2.41
769 792 4.472108 AGTCCCTCCGTTCCATAATACAAA 59.528 41.667 0.00 0.00 0.00 2.83
770 793 5.045432 AGTCCCTCCGTTCCATAATACAAAA 60.045 40.000 0.00 0.00 0.00 2.44
771 794 5.296035 GTCCCTCCGTTCCATAATACAAAAG 59.704 44.000 0.00 0.00 0.00 2.27
772 795 4.036380 CCCTCCGTTCCATAATACAAAAGC 59.964 45.833 0.00 0.00 0.00 3.51
773 796 4.260620 CCTCCGTTCCATAATACAAAAGCG 60.261 45.833 0.00 0.00 0.00 4.68
774 797 4.255301 TCCGTTCCATAATACAAAAGCGT 58.745 39.130 0.00 0.00 0.00 5.07
775 798 4.696402 TCCGTTCCATAATACAAAAGCGTT 59.304 37.500 0.00 0.00 0.00 4.84
776 799 5.181622 TCCGTTCCATAATACAAAAGCGTTT 59.818 36.000 0.00 0.00 0.00 3.60
777 800 5.859648 CCGTTCCATAATACAAAAGCGTTTT 59.140 36.000 0.00 0.00 0.00 2.43
778 801 6.363896 CCGTTCCATAATACAAAAGCGTTTTT 59.636 34.615 3.95 3.95 36.97 1.94
794 817 5.701029 CGTTTTTGACACAAAAATGCTCT 57.299 34.783 20.77 0.00 31.83 4.09
795 818 6.093532 CGTTTTTGACACAAAAATGCTCTT 57.906 33.333 20.77 0.00 31.83 2.85
796 819 7.215696 CGTTTTTGACACAAAAATGCTCTTA 57.784 32.000 20.77 1.24 31.83 2.10
797 820 7.840489 CGTTTTTGACACAAAAATGCTCTTAT 58.160 30.769 20.77 0.00 31.83 1.73
798 821 8.963130 CGTTTTTGACACAAAAATGCTCTTATA 58.037 29.630 20.77 0.15 31.83 0.98
805 828 9.683069 GACACAAAAATGCTCTTATATTATGGG 57.317 33.333 0.00 0.00 0.00 4.00
806 829 9.420118 ACACAAAAATGCTCTTATATTATGGGA 57.580 29.630 0.00 0.00 0.00 4.37
807 830 9.683069 CACAAAAATGCTCTTATATTATGGGAC 57.317 33.333 0.00 0.00 0.00 4.46
808 831 8.567948 ACAAAAATGCTCTTATATTATGGGACG 58.432 33.333 0.00 0.00 0.00 4.79
809 832 7.687941 AAAATGCTCTTATATTATGGGACGG 57.312 36.000 0.00 0.00 0.00 4.79
810 833 6.620877 AATGCTCTTATATTATGGGACGGA 57.379 37.500 0.00 0.00 0.00 4.69
811 834 5.661056 TGCTCTTATATTATGGGACGGAG 57.339 43.478 0.00 0.00 0.00 4.63
812 835 4.466370 TGCTCTTATATTATGGGACGGAGG 59.534 45.833 0.00 0.00 0.00 4.30
813 836 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
814 837 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
815 838 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
816 839 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
817 840 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
818 841 3.562108 ATTATGGGACGGAGGGAGTAT 57.438 47.619 0.00 0.00 0.00 2.12
819 842 4.687262 ATTATGGGACGGAGGGAGTATA 57.313 45.455 0.00 0.00 0.00 1.47
820 843 4.474303 TTATGGGACGGAGGGAGTATAA 57.526 45.455 0.00 0.00 0.00 0.98
821 844 3.562108 ATGGGACGGAGGGAGTATAAT 57.438 47.619 0.00 0.00 0.00 1.28
822 845 2.885616 TGGGACGGAGGGAGTATAATC 58.114 52.381 0.00 0.00 0.00 1.75
862 976 5.531287 AGGAAATTGCAAAGACGTACTTTCT 59.469 36.000 1.71 0.00 45.66 2.52
871 985 5.541953 AAGACGTACTTTCTTGTACCCTT 57.458 39.130 5.95 0.00 39.51 3.95
888 1002 0.097674 CTTGCTTGAGGGCGAATTCG 59.902 55.000 23.34 23.34 43.27 3.34
916 1779 1.334149 GCAAACGTCTTCTGCTGTTCC 60.334 52.381 0.00 0.00 33.20 3.62
989 1852 4.504916 CCCTCGTCTGCGGCTCTG 62.505 72.222 0.00 0.00 38.89 3.35
1302 2165 2.217745 CCTCTATCGCCCCCTTCCC 61.218 68.421 0.00 0.00 0.00 3.97
1328 2191 3.686726 CCTTCCTTTCTGTTGATCCTTCG 59.313 47.826 0.00 0.00 0.00 3.79
1369 2232 8.749841 ACAGATGATACGATGTTTAATCTAGC 57.250 34.615 0.00 0.00 0.00 3.42
1395 2258 4.062991 AGTGGTTCTTTGATGTTCGGTAC 58.937 43.478 0.00 0.00 0.00 3.34
1413 2276 0.030638 ACAACTTGGTTGATGCGTGC 59.969 50.000 15.89 0.00 45.28 5.34
1429 2292 1.927174 CGTGCGGATAGTTCAGAAAGG 59.073 52.381 0.00 0.00 0.00 3.11
1437 2300 6.520272 CGGATAGTTCAGAAAGGATTCAGAT 58.480 40.000 0.00 0.00 38.06 2.90
1448 2311 7.069331 CAGAAAGGATTCAGATACTACTGAGGT 59.931 40.741 0.00 0.00 45.63 3.85
1471 2334 6.640907 GGTTTCAGTTTAAGCAAATGTGGTAG 59.359 38.462 0.00 0.00 34.25 3.18
1489 2352 2.969628 AGATGGATGAGTGGTTCGTC 57.030 50.000 0.00 0.00 40.49 4.20
1505 2368 3.120321 TCGTCAAGGCACTGTAATTGT 57.880 42.857 0.00 0.00 40.86 2.71
1512 2375 2.064573 GCACTGTAATTGTTGGTGCC 57.935 50.000 13.06 0.00 44.87 5.01
1513 2376 1.613437 GCACTGTAATTGTTGGTGCCT 59.387 47.619 13.06 0.00 44.87 4.75
1514 2377 2.817258 GCACTGTAATTGTTGGTGCCTA 59.183 45.455 13.06 0.00 44.87 3.93
1515 2378 3.119849 GCACTGTAATTGTTGGTGCCTAG 60.120 47.826 13.06 0.00 44.87 3.02
1516 2379 3.081804 ACTGTAATTGTTGGTGCCTAGC 58.918 45.455 0.00 0.00 0.00 3.42
1517 2380 2.423538 CTGTAATTGTTGGTGCCTAGCC 59.576 50.000 0.00 0.00 0.00 3.93
1518 2381 1.400494 GTAATTGTTGGTGCCTAGCCG 59.600 52.381 0.00 0.00 0.00 5.52
1519 2382 1.595093 AATTGTTGGTGCCTAGCCGC 61.595 55.000 0.00 0.00 0.00 6.53
1529 2392 2.731374 CTAGCCGCCTAGGAGCAC 59.269 66.667 22.16 10.54 45.00 4.40
1590 2453 6.631016 TGATTAGTACACTGCTAGAACCTTG 58.369 40.000 0.00 0.00 0.00 3.61
1592 2455 4.522722 AGTACACTGCTAGAACCTTGTC 57.477 45.455 0.00 0.00 0.00 3.18
1602 2465 1.271379 AGAACCTTGTCGTGTATCGCA 59.729 47.619 0.00 0.00 39.67 5.10
1613 2477 5.577945 TGTCGTGTATCGCATATCTACGATA 59.422 40.000 0.00 7.56 46.50 2.92
1679 2543 3.053455 GCGTTGATAGTGAGATACAGCC 58.947 50.000 0.00 0.00 0.00 4.85
1688 2552 5.331876 AGTGAGATACAGCCTTAACAGTC 57.668 43.478 0.00 0.00 0.00 3.51
1801 2670 9.865484 GTCTCAAAATAAGTGTCTCAACTTTAC 57.135 33.333 0.00 0.00 40.77 2.01
1814 2683 9.090692 TGTCTCAACTTTACTACAACTTTGTAC 57.909 33.333 0.00 0.00 42.35 2.90
1815 2684 9.310716 GTCTCAACTTTACTACAACTTTGTACT 57.689 33.333 0.00 0.00 42.35 2.73
1850 2719 1.241990 TTGAGACACGACGGAGGGAG 61.242 60.000 0.00 0.00 0.00 4.30
1878 2754 5.738619 TCTAGCATCAGACCTGTTACAAA 57.261 39.130 0.00 0.00 0.00 2.83
1896 2772 5.257082 ACAAACCAACATGAACTGTAACC 57.743 39.130 0.00 0.00 36.98 2.85
1927 4394 9.159364 CGACTAAGTAATAAAGGCCTAAAGTTT 57.841 33.333 5.16 0.00 0.00 2.66
1963 4430 4.900684 TCGGACATAGAACCACAATCAAA 58.099 39.130 0.00 0.00 0.00 2.69
1988 4455 7.750229 ATAGTCATTTGTTGTCAGTTGTCAT 57.250 32.000 0.00 0.00 0.00 3.06
2051 4520 8.302965 ACTGACGAACTTAAAATAACTACCAC 57.697 34.615 0.00 0.00 0.00 4.16
2062 4531 9.621629 TTAAAATAACTACCACATGATCGGAAT 57.378 29.630 0.00 0.00 0.00 3.01
2063 4532 7.730364 AAATAACTACCACATGATCGGAATC 57.270 36.000 0.00 0.00 0.00 2.52
2105 4574 3.134442 TGCTTTGCTTTTCTGGTTCCAAT 59.866 39.130 0.00 0.00 0.00 3.16
2106 4575 4.129380 GCTTTGCTTTTCTGGTTCCAATT 58.871 39.130 0.00 0.00 0.00 2.32
2158 4627 2.354103 GCACTACAGCTGATCTTCACCA 60.354 50.000 23.35 0.00 0.00 4.17
2164 4633 0.908198 GCTGATCTTCACCACCCTCT 59.092 55.000 0.00 0.00 0.00 3.69
2250 4719 7.214381 TCGAAAGGTGTCCATATACCAAATAG 58.786 38.462 0.00 0.00 39.29 1.73
2252 4721 7.497909 CGAAAGGTGTCCATATACCAAATAGTT 59.502 37.037 0.00 0.00 39.29 2.24
2253 4722 9.185680 GAAAGGTGTCCATATACCAAATAGTTT 57.814 33.333 0.00 0.00 39.29 2.66
2420 4964 2.027745 TGAGAGTAGCAAGCTTCCAAGG 60.028 50.000 0.00 0.00 0.00 3.61
2623 5167 7.766219 TTAGCGCCTTCTAGTTAAATTGTAG 57.234 36.000 2.29 0.00 0.00 2.74
2627 5171 5.500290 CGCCTTCTAGTTAAATTGTAGTGCG 60.500 44.000 10.12 10.12 0.00 5.34
2642 5186 6.176975 TGTAGTGCGAATGATTAGTTTTGG 57.823 37.500 0.00 0.00 0.00 3.28
2652 5196 8.281893 CGAATGATTAGTTTTGGTTGCATTTTT 58.718 29.630 0.00 0.00 0.00 1.94
2702 5246 2.408271 TGTGGATGGATCTGCAGAAC 57.592 50.000 22.50 18.57 0.00 3.01
2708 5252 2.885135 TGGATCTGCAGAACAATGGT 57.115 45.000 22.50 1.08 0.00 3.55
2714 5258 1.879380 CTGCAGAACAATGGTCGGAAA 59.121 47.619 8.42 0.00 0.00 3.13
2768 5312 2.271173 GGACTTAGGGGCCCAACG 59.729 66.667 27.72 14.40 37.05 4.10
2858 5402 2.092429 TGACTTCAACAAGGCTCCAGTT 60.092 45.455 0.00 0.00 38.67 3.16
2897 5441 2.263077 CACTTCCCGATGTCTTTCTCG 58.737 52.381 0.00 0.00 34.73 4.04
2903 5447 2.821546 CCGATGTCTTTCTCGGCATTA 58.178 47.619 0.00 0.00 46.87 1.90
2939 5483 8.239998 GGAAAAAGTATCAAGGATGTCTTTCTG 58.760 37.037 9.71 0.00 31.85 3.02
3056 5600 6.904463 TCACTGTATGAACACTACTACCAA 57.096 37.500 0.00 0.00 33.02 3.67
3074 5618 2.159198 CCAATCTAACATGCACCAAGGC 60.159 50.000 0.00 0.00 0.00 4.35
3083 5627 0.818938 TGCACCAAGGCTATGCAATG 59.181 50.000 16.06 0.00 45.96 2.82
3123 5667 0.179009 TTCTGAAGCAGCAGCACCTT 60.179 50.000 3.17 0.00 45.49 3.50
3416 5960 9.973450 GTCTTAGCAAAGATATATGACTCAAGA 57.027 33.333 0.00 0.00 43.50 3.02
3650 6194 4.559862 AGTTAACTGGACATGGAAGGAG 57.440 45.455 7.48 0.00 0.00 3.69
3797 6341 2.267426 GTGTACACATATCTGCGTGCA 58.733 47.619 21.14 0.00 36.57 4.57
3799 6343 1.860950 GTACACATATCTGCGTGCAGG 59.139 52.381 20.78 1.01 43.75 4.85
3956 6500 1.192428 GTCACCCTGTAACCGAGGAT 58.808 55.000 0.00 0.00 31.48 3.24
3959 6503 2.024655 TCACCCTGTAACCGAGGATAGT 60.025 50.000 0.00 0.00 31.48 2.12
4067 6611 3.640029 TCGTTCTACCTCACCTCTGTTTT 59.360 43.478 0.00 0.00 0.00 2.43
4076 6620 4.216257 CCTCACCTCTGTTTTGTGGTATTG 59.784 45.833 0.00 0.00 33.16 1.90
4079 6623 3.157087 CCTCTGTTTTGTGGTATTGCCT 58.843 45.455 0.00 0.00 38.35 4.75
4094 6638 5.527582 GGTATTGCCTACGATTGTGATTCTT 59.472 40.000 0.00 0.00 0.00 2.52
4236 6780 3.741388 CGGTCGCTGGATAAGGAAAATCT 60.741 47.826 0.00 0.00 0.00 2.40
4250 6794 5.006386 AGGAAAATCTTCATCGCTTTCTGT 58.994 37.500 0.00 0.00 32.75 3.41
4251 6795 5.474876 AGGAAAATCTTCATCGCTTTCTGTT 59.525 36.000 0.00 0.00 32.75 3.16
4319 6863 9.932207 TTTAAAATCATGCAAATCTTCTGTGAT 57.068 25.926 0.00 0.00 0.00 3.06
4320 6864 7.827819 AAAATCATGCAAATCTTCTGTGATG 57.172 32.000 0.00 0.00 0.00 3.07
4321 6865 4.365899 TCATGCAAATCTTCTGTGATGC 57.634 40.909 0.00 0.00 0.00 3.91
4322 6866 2.905959 TGCAAATCTTCTGTGATGCG 57.094 45.000 0.00 0.00 0.00 4.73
4328 6872 5.698832 CAAATCTTCTGTGATGCGGTTTTA 58.301 37.500 0.00 0.00 0.00 1.52
4330 6874 4.944962 TCTTCTGTGATGCGGTTTTATG 57.055 40.909 0.00 0.00 0.00 1.90
4331 6875 3.126858 TCTTCTGTGATGCGGTTTTATGC 59.873 43.478 0.00 0.00 0.00 3.14
4359 6915 4.046938 TGAAGATACTGATGACGCCTTC 57.953 45.455 0.00 0.00 0.00 3.46
4397 6953 2.366916 GCAGAGCTCTTATGAAGGCCTA 59.633 50.000 15.27 0.00 0.00 3.93
4478 7034 3.131396 CGTTTGCTGTCTACAGAACCTT 58.869 45.455 14.21 0.00 46.59 3.50
4496 7052 4.469657 ACCTTGTCCATTTAGCTGTTTCA 58.530 39.130 0.00 0.00 0.00 2.69
4531 7133 1.577468 CACCGTGCTATATTTCGGCA 58.423 50.000 0.00 0.00 45.76 5.69
4532 7134 1.526887 CACCGTGCTATATTTCGGCAG 59.473 52.381 0.00 0.00 45.76 4.85
4533 7135 1.411246 ACCGTGCTATATTTCGGCAGA 59.589 47.619 0.00 0.00 45.76 4.26
4534 7136 2.061773 CCGTGCTATATTTCGGCAGAG 58.938 52.381 0.00 0.00 36.62 3.35
4535 7137 2.545952 CCGTGCTATATTTCGGCAGAGT 60.546 50.000 0.00 0.00 36.62 3.24
4536 7138 3.123804 CGTGCTATATTTCGGCAGAGTT 58.876 45.455 0.00 0.00 36.62 3.01
4537 7139 3.060272 CGTGCTATATTTCGGCAGAGTTG 60.060 47.826 0.00 0.00 36.62 3.16
4554 7156 2.253452 GCAAAGGCACTGCAGACG 59.747 61.111 23.35 12.22 40.86 4.18
4555 7157 2.253758 GCAAAGGCACTGCAGACGA 61.254 57.895 23.35 0.00 40.86 4.20
4556 7158 1.785041 GCAAAGGCACTGCAGACGAA 61.785 55.000 23.35 0.00 40.86 3.85
4557 7159 0.236711 CAAAGGCACTGCAGACGAAG 59.763 55.000 23.35 5.65 40.86 3.79
4558 7160 1.510480 AAAGGCACTGCAGACGAAGC 61.510 55.000 23.35 14.96 40.86 3.86
4559 7161 2.665008 AAGGCACTGCAGACGAAGCA 62.665 55.000 23.35 0.00 40.86 3.91
4560 7162 2.553268 GCACTGCAGACGAAGCAC 59.447 61.111 23.35 0.00 37.02 4.40
4561 7163 2.959357 GCACTGCAGACGAAGCACC 61.959 63.158 23.35 0.00 37.02 5.01
4562 7164 2.356313 ACTGCAGACGAAGCACCG 60.356 61.111 23.35 0.00 37.02 4.94
4563 7165 2.356313 CTGCAGACGAAGCACCGT 60.356 61.111 8.42 3.04 46.43 4.83
4564 7166 2.661537 TGCAGACGAAGCACCGTG 60.662 61.111 8.11 0.00 43.49 4.94
4565 7167 4.077188 GCAGACGAAGCACCGTGC 62.077 66.667 16.04 16.04 43.49 5.34
4576 7178 0.234884 GCACCGTGCTATATTTCGGC 59.765 55.000 16.51 0.00 45.76 5.54
4577 7179 1.577468 CACCGTGCTATATTTCGGCA 58.423 50.000 0.00 0.00 45.76 5.69
4642 7258 2.862674 TTATTGGCCGGGTCACTCGC 62.863 60.000 0.00 0.00 0.00 5.03
4645 7261 4.509737 GGCCGGGTCACTCGCTAC 62.510 72.222 2.18 0.00 0.00 3.58
4647 7263 2.117156 GCCGGGTCACTCGCTACTA 61.117 63.158 2.18 0.00 0.00 1.82
4648 7264 1.726265 CCGGGTCACTCGCTACTAC 59.274 63.158 0.00 0.00 0.00 2.73
4649 7265 0.747283 CCGGGTCACTCGCTACTACT 60.747 60.000 0.00 0.00 0.00 2.57
4711 7328 8.839310 ACCATCTATCTAACATGCATAAAGAC 57.161 34.615 0.00 0.00 0.00 3.01
4713 7330 8.715998 CCATCTATCTAACATGCATAAAGACAC 58.284 37.037 0.00 0.00 0.00 3.67
4771 7388 2.755650 ACGCGTCATTTCTTCAGAACT 58.244 42.857 5.58 0.00 33.13 3.01
4788 7405 8.716674 TTCAGAACTAGGGAGTTAAGAACTTA 57.283 34.615 0.00 0.00 46.23 2.24
4799 7416 7.336176 GGGAGTTAAGAACTTATTAACACTGGG 59.664 40.741 17.29 0.00 42.81 4.45
4813 7430 5.520376 AACACTGGGTGAAATTCTTTGAG 57.480 39.130 4.62 0.00 36.96 3.02
4855 7493 1.004320 CCGTGTCCGATGTTTGGGA 60.004 57.895 0.00 0.00 35.63 4.37
4860 7498 1.909986 TGTCCGATGTTTGGGATGGTA 59.090 47.619 0.00 0.00 31.80 3.25
4879 7523 0.526662 AATGTCGTCCGACTCACCTC 59.473 55.000 19.30 0.00 44.80 3.85
4971 7625 3.084039 TCTCAGAAATGGATGTTGCACC 58.916 45.455 0.00 0.00 0.00 5.01
4978 7632 0.482446 TGGATGTTGCACCCCTCTTT 59.518 50.000 0.00 0.00 0.00 2.52
4979 7633 0.890683 GGATGTTGCACCCCTCTTTG 59.109 55.000 0.00 0.00 0.00 2.77
4981 7635 1.963515 GATGTTGCACCCCTCTTTGTT 59.036 47.619 0.00 0.00 0.00 2.83
4982 7636 1.398692 TGTTGCACCCCTCTTTGTTC 58.601 50.000 0.00 0.00 0.00 3.18
4983 7637 1.341482 TGTTGCACCCCTCTTTGTTCA 60.341 47.619 0.00 0.00 0.00 3.18
4984 7638 1.338020 GTTGCACCCCTCTTTGTTCAG 59.662 52.381 0.00 0.00 0.00 3.02
4985 7639 0.550914 TGCACCCCTCTTTGTTCAGT 59.449 50.000 0.00 0.00 0.00 3.41
4986 7640 1.239347 GCACCCCTCTTTGTTCAGTC 58.761 55.000 0.00 0.00 0.00 3.51
4987 7641 1.476833 GCACCCCTCTTTGTTCAGTCA 60.477 52.381 0.00 0.00 0.00 3.41
4988 7642 2.815589 GCACCCCTCTTTGTTCAGTCAT 60.816 50.000 0.00 0.00 0.00 3.06
4989 7643 3.490348 CACCCCTCTTTGTTCAGTCATT 58.510 45.455 0.00 0.00 0.00 2.57
4990 7644 3.891366 CACCCCTCTTTGTTCAGTCATTT 59.109 43.478 0.00 0.00 0.00 2.32
4991 7645 3.891366 ACCCCTCTTTGTTCAGTCATTTG 59.109 43.478 0.00 0.00 0.00 2.32
4992 7646 3.891366 CCCCTCTTTGTTCAGTCATTTGT 59.109 43.478 0.00 0.00 0.00 2.83
4993 7647 5.070001 CCCCTCTTTGTTCAGTCATTTGTA 58.930 41.667 0.00 0.00 0.00 2.41
4994 7648 5.048713 CCCCTCTTTGTTCAGTCATTTGTAC 60.049 44.000 0.00 0.00 0.00 2.90
4995 7649 5.765182 CCCTCTTTGTTCAGTCATTTGTACT 59.235 40.000 0.00 0.00 0.00 2.73
4996 7650 6.073003 CCCTCTTTGTTCAGTCATTTGTACTC 60.073 42.308 0.00 0.00 0.00 2.59
5006 7660 5.707298 CAGTCATTTGTACTCCCTTGTCAAT 59.293 40.000 0.00 0.00 0.00 2.57
5024 7678 4.280929 GTCAATTGTAGGGGGAATTATGCC 59.719 45.833 5.13 0.00 36.03 4.40
5040 7708 0.317160 TGCCCGTACACTCAGTTCAG 59.683 55.000 0.00 0.00 0.00 3.02
5048 7716 2.042464 ACACTCAGTTCAGCTGGAGAA 58.958 47.619 20.39 3.69 45.08 2.87
5052 7720 2.235650 CTCAGTTCAGCTGGAGAATGGA 59.764 50.000 15.13 2.47 45.08 3.41
5064 7732 3.533068 TGGAGAATGGAAATTCCTCCCAT 59.467 43.478 13.78 0.00 42.08 4.00
5087 7757 1.439543 ACAGGTTTTCTCCTCTGGCT 58.560 50.000 0.00 0.00 35.37 4.75
5088 7758 2.621070 ACAGGTTTTCTCCTCTGGCTA 58.379 47.619 0.00 0.00 35.37 3.93
5094 7767 1.885049 TTCTCCTCTGGCTATTGGCT 58.115 50.000 1.98 0.00 41.46 4.75
5117 7790 1.470098 CAATCGTCTTTTGAGCAGGGG 59.530 52.381 0.00 0.00 0.00 4.79
5132 7805 0.178944 AGGGGTAAACTGGCCAAACC 60.179 55.000 7.01 12.12 39.84 3.27
5136 7809 0.594602 GTAAACTGGCCAAACCCGAC 59.405 55.000 7.01 0.00 37.83 4.79
5138 7811 2.292785 AAACTGGCCAAACCCGACCT 62.293 55.000 7.01 0.00 37.83 3.85
5151 7824 2.108168 CCCGACCTTCTCTGGATGTTA 58.892 52.381 0.00 0.00 0.00 2.41
5171 7844 1.277557 ACACTCTCAGGGATGAACTGC 59.722 52.381 0.00 0.00 35.94 4.40
5185 7858 4.481930 TGAACTGCCAAAACGTCTTATG 57.518 40.909 0.00 0.00 0.00 1.90
5201 7874 5.998981 CGTCTTATGTATACTCCCTCTGTCT 59.001 44.000 4.17 0.00 0.00 3.41
5207 7880 3.697190 ATACTCCCTCTGTCTGGACAT 57.303 47.619 3.80 0.00 41.01 3.06
5221 7894 5.035443 GTCTGGACATGTGTTAGATACGTC 58.965 45.833 1.15 0.00 0.00 4.34
5230 7903 4.022935 TGTGTTAGATACGTCCGTTTGAGT 60.023 41.667 0.00 0.00 0.00 3.41
5231 7904 4.322804 GTGTTAGATACGTCCGTTTGAGTG 59.677 45.833 0.00 0.00 0.00 3.51
5248 7921 2.921754 GAGTGACAACTAATTCCGGACG 59.078 50.000 1.83 0.00 36.52 4.79
5249 7922 1.997606 GTGACAACTAATTCCGGACGG 59.002 52.381 1.83 3.96 0.00 4.79
5250 7923 1.894466 TGACAACTAATTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
5252 7925 2.864343 GACAACTAATTCCGGACGGATG 59.136 50.000 14.89 10.86 44.74 3.51
5253 7926 2.210116 CAACTAATTCCGGACGGATGG 58.790 52.381 14.89 5.26 44.74 3.51
5254 7927 0.106149 ACTAATTCCGGACGGATGGC 59.894 55.000 14.89 0.00 44.74 4.40
5255 7928 0.944311 CTAATTCCGGACGGATGGCG 60.944 60.000 14.89 0.67 44.74 5.69
5257 7930 1.678598 AATTCCGGACGGATGGCGTA 61.679 55.000 14.89 0.00 44.74 4.42
5258 7931 1.469335 ATTCCGGACGGATGGCGTAT 61.469 55.000 14.89 0.80 44.74 3.06
5259 7932 2.355837 CCGGACGGATGGCGTATG 60.356 66.667 4.40 0.00 37.50 2.39
5260 7933 2.415843 CGGACGGATGGCGTATGT 59.584 61.111 0.00 0.00 0.00 2.29
5262 7935 1.143183 GGACGGATGGCGTATGTGT 59.857 57.895 0.00 0.00 0.00 3.72
5263 7936 0.461339 GGACGGATGGCGTATGTGTT 60.461 55.000 0.00 0.00 0.00 3.32
5264 7937 1.365699 GACGGATGGCGTATGTGTTT 58.634 50.000 0.00 0.00 0.00 2.83
5279 7984 1.332375 GTGTTTTGACGCCTGTGCTTA 59.668 47.619 0.00 0.00 34.43 3.09
5308 8013 0.872388 ACCCGATCGTCACTTTTTGC 59.128 50.000 15.09 0.00 0.00 3.68
5309 8014 0.168128 CCCGATCGTCACTTTTTGCC 59.832 55.000 15.09 0.00 0.00 4.52
5333 8038 0.419865 TGGTAATGAGACCAGGGGGA 59.580 55.000 0.00 0.00 44.79 4.81
5346 9518 2.503331 CAGGGGGAAATTTTGCCAAAC 58.497 47.619 19.72 10.19 43.95 2.93
5360 9532 1.405105 GCCAAACAAAGCACTGAGTGA 59.595 47.619 18.18 0.00 35.23 3.41
5361 9533 2.159254 GCCAAACAAAGCACTGAGTGAA 60.159 45.455 18.18 0.00 35.23 3.18
5362 9534 3.491447 GCCAAACAAAGCACTGAGTGAAT 60.491 43.478 18.18 0.18 35.23 2.57
5363 9535 4.046462 CCAAACAAAGCACTGAGTGAATG 58.954 43.478 18.18 13.20 35.23 2.67
5364 9536 4.202040 CCAAACAAAGCACTGAGTGAATGA 60.202 41.667 18.18 0.00 35.23 2.57
5375 9547 6.746364 GCACTGAGTGAATGAAAGAAATCATC 59.254 38.462 18.18 0.00 35.12 2.92
5482 9662 0.179056 TTCGAAATCCAGATCGCCCC 60.179 55.000 0.00 0.00 38.87 5.80
5483 9663 1.956170 CGAAATCCAGATCGCCCCG 60.956 63.158 0.00 0.00 31.71 5.73
5484 9664 1.598130 GAAATCCAGATCGCCCCGG 60.598 63.158 0.00 0.00 0.00 5.73
5485 9665 3.120086 AAATCCAGATCGCCCCGGG 62.120 63.158 15.80 15.80 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 18 0.977108 AAACCGGCCCTATACGTCCA 60.977 55.000 0.00 0.00 0.00 4.02
21 23 1.070289 CTCCTCAAACCGGCCCTATAC 59.930 57.143 0.00 0.00 0.00 1.47
29 31 1.446272 GTCGAGCTCCTCAAACCGG 60.446 63.158 8.47 0.00 0.00 5.28
43 45 3.253921 TCACAAAATCGTGACCTAGTCGA 59.746 43.478 0.00 0.00 40.94 4.20
72 74 4.131088 GAGGACGACCCGGTCAGC 62.131 72.222 17.87 8.10 40.87 4.26
102 104 1.270358 GCTGGACTTCTCAAACGTCCT 60.270 52.381 8.88 0.00 45.75 3.85
106 108 5.250235 TCTATAGCTGGACTTCTCAAACG 57.750 43.478 0.00 0.00 0.00 3.60
136 138 1.332144 AACACCCCATCATGGCATGC 61.332 55.000 22.56 9.90 35.79 4.06
141 143 1.089481 CGACGAACACCCCATCATGG 61.089 60.000 0.00 0.00 37.25 3.66
143 145 0.391130 CACGACGAACACCCCATCAT 60.391 55.000 0.00 0.00 0.00 2.45
161 163 0.321298 GTTCGCTCCCTAAGGCAACA 60.321 55.000 0.00 0.00 41.41 3.33
182 184 1.343465 GGAAGGAAGACAGGTTGACGA 59.657 52.381 0.00 0.00 0.00 4.20
184 186 1.608283 CGGGAAGGAAGACAGGTTGAC 60.608 57.143 0.00 0.00 0.00 3.18
192 194 2.357075 GGAACAATCGGGAAGGAAGAC 58.643 52.381 0.00 0.00 0.00 3.01
213 215 3.703556 AGTGATGAGGTGTCAGACATAGG 59.296 47.826 6.51 0.00 35.66 2.57
221 223 5.128827 GGGTATAGAAAGTGATGAGGTGTCA 59.871 44.000 0.00 0.00 37.02 3.58
251 253 2.818432 ACAACGATAGACGAGACAAGGT 59.182 45.455 0.00 0.00 45.77 3.50
256 258 3.617706 TGAGAGACAACGATAGACGAGAC 59.382 47.826 0.00 0.00 45.77 3.36
280 282 0.534873 GAGCCAGAGAGGAAGGACAC 59.465 60.000 0.00 0.00 41.22 3.67
295 297 1.623811 TGAGTGGGAAGTGTTAGAGCC 59.376 52.381 0.00 0.00 0.00 4.70
300 302 5.772393 ATGGTAATGAGTGGGAAGTGTTA 57.228 39.130 0.00 0.00 0.00 2.41
319 321 7.908082 CGGCAATAATAAATATACCGTGAATGG 59.092 37.037 0.00 0.00 38.28 3.16
321 323 8.556213 ACGGCAATAATAAATATACCGTGAAT 57.444 30.769 2.57 0.00 46.83 2.57
326 328 9.272901 CAATTGACGGCAATAATAAATATACCG 57.727 33.333 18.77 0.00 43.71 4.02
338 341 4.827692 ACTAGTGACAATTGACGGCAATA 58.172 39.130 18.77 0.00 43.71 1.90
343 346 3.649073 TGTGACTAGTGACAATTGACGG 58.351 45.455 13.10 2.61 0.00 4.79
345 348 5.163913 GCTGATGTGACTAGTGACAATTGAC 60.164 44.000 19.22 6.72 29.00 3.18
386 390 5.391310 GCATGAAGGATAATCAATGGCTACG 60.391 44.000 0.00 0.00 0.00 3.51
394 398 5.056480 CCGTACTGCATGAAGGATAATCAA 58.944 41.667 5.47 0.00 0.00 2.57
429 433 7.460214 TGGACTATCCAAACTAAACCCATAT 57.540 36.000 0.00 0.00 45.00 1.78
449 453 8.706035 GCATGCAAAGATGAAATTATTATGGAC 58.294 33.333 14.21 0.00 0.00 4.02
492 496 6.076981 TGTGAATCAAAGAGGCTTTTTCTC 57.923 37.500 0.00 0.00 0.00 2.87
498 502 7.472334 AAATACATGTGAATCAAAGAGGCTT 57.528 32.000 9.11 0.00 0.00 4.35
591 598 7.502060 AAATAAGGATCTCAACTTCAGGAGA 57.498 36.000 0.00 0.00 43.71 3.71
597 604 6.183360 CGTCCCAAAATAAGGATCTCAACTTC 60.183 42.308 0.00 0.00 33.88 3.01
607 614 1.562475 CCCTCCGTCCCAAAATAAGGA 59.438 52.381 0.00 0.00 0.00 3.36
657 679 9.606631 GAAAAGAATTCTGGAAGATTCTAGCTA 57.393 33.333 9.17 0.00 46.36 3.32
707 730 8.017946 GCACTCAAGTTCTACAGGAAATTTTAG 58.982 37.037 0.00 0.00 39.74 1.85
708 731 7.719633 AGCACTCAAGTTCTACAGGAAATTTTA 59.280 33.333 0.00 0.00 39.74 1.52
747 770 4.411256 TTGTATTATGGAACGGAGGGAC 57.589 45.455 0.00 0.00 0.00 4.46
748 771 5.433526 CTTTTGTATTATGGAACGGAGGGA 58.566 41.667 0.00 0.00 0.00 4.20
750 773 4.260620 CGCTTTTGTATTATGGAACGGAGG 60.261 45.833 0.00 0.00 0.00 4.30
751 774 4.331717 ACGCTTTTGTATTATGGAACGGAG 59.668 41.667 0.00 0.00 0.00 4.63
752 775 4.255301 ACGCTTTTGTATTATGGAACGGA 58.745 39.130 0.00 0.00 0.00 4.69
753 776 4.609691 ACGCTTTTGTATTATGGAACGG 57.390 40.909 0.00 0.00 0.00 4.44
754 777 6.921332 AAAACGCTTTTGTATTATGGAACG 57.079 33.333 0.00 0.00 0.00 3.95
766 789 8.508161 AGCATTTTTGTGTCAAAAACGCTTTTG 61.508 33.333 24.85 16.11 43.32 2.44
767 790 5.567154 GCATTTTTGTGTCAAAAACGCTTTT 59.433 32.000 22.33 7.19 35.99 2.27
768 791 5.085390 GCATTTTTGTGTCAAAAACGCTTT 58.915 33.333 22.33 7.71 35.99 3.51
769 792 4.391523 AGCATTTTTGTGTCAAAAACGCTT 59.608 33.333 24.85 14.90 43.32 4.68
770 793 3.932089 AGCATTTTTGTGTCAAAAACGCT 59.068 34.783 24.85 24.85 41.78 5.07
771 794 4.032786 AGAGCATTTTTGTGTCAAAAACGC 59.967 37.500 22.21 22.21 38.23 4.84
772 795 5.701029 AGAGCATTTTTGTGTCAAAAACG 57.299 34.783 18.26 13.47 32.67 3.60
779 802 9.683069 CCCATAATATAAGAGCATTTTTGTGTC 57.317 33.333 0.00 0.00 0.00 3.67
780 803 9.420118 TCCCATAATATAAGAGCATTTTTGTGT 57.580 29.630 0.00 0.00 0.00 3.72
781 804 9.683069 GTCCCATAATATAAGAGCATTTTTGTG 57.317 33.333 0.00 0.00 0.00 3.33
782 805 8.567948 CGTCCCATAATATAAGAGCATTTTTGT 58.432 33.333 0.00 0.00 0.00 2.83
783 806 8.023128 CCGTCCCATAATATAAGAGCATTTTTG 58.977 37.037 0.00 0.00 0.00 2.44
784 807 7.942341 TCCGTCCCATAATATAAGAGCATTTTT 59.058 33.333 0.00 0.00 0.00 1.94
785 808 7.458397 TCCGTCCCATAATATAAGAGCATTTT 58.542 34.615 0.00 0.00 0.00 1.82
786 809 7.016153 TCCGTCCCATAATATAAGAGCATTT 57.984 36.000 0.00 0.00 0.00 2.32
787 810 6.352222 CCTCCGTCCCATAATATAAGAGCATT 60.352 42.308 0.00 0.00 0.00 3.56
788 811 5.129485 CCTCCGTCCCATAATATAAGAGCAT 59.871 44.000 0.00 0.00 0.00 3.79
789 812 4.466370 CCTCCGTCCCATAATATAAGAGCA 59.534 45.833 0.00 0.00 0.00 4.26
790 813 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
791 814 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
792 815 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
793 816 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
794 817 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
795 818 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
796 819 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
797 820 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
798 821 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
799 822 4.474303 TTATACTCCCTCCGTCCCATAA 57.526 45.455 0.00 0.00 0.00 1.90
800 823 4.044952 TGATTATACTCCCTCCGTCCCATA 59.955 45.833 0.00 0.00 0.00 2.74
801 824 3.181410 TGATTATACTCCCTCCGTCCCAT 60.181 47.826 0.00 0.00 0.00 4.00
802 825 2.178325 TGATTATACTCCCTCCGTCCCA 59.822 50.000 0.00 0.00 0.00 4.37
803 826 2.885616 TGATTATACTCCCTCCGTCCC 58.114 52.381 0.00 0.00 0.00 4.46
804 827 4.587684 TCTTTGATTATACTCCCTCCGTCC 59.412 45.833 0.00 0.00 0.00 4.79
805 828 5.302313 AGTCTTTGATTATACTCCCTCCGTC 59.698 44.000 0.00 0.00 0.00 4.79
806 829 5.209659 AGTCTTTGATTATACTCCCTCCGT 58.790 41.667 0.00 0.00 0.00 4.69
807 830 5.302059 TGAGTCTTTGATTATACTCCCTCCG 59.698 44.000 0.00 0.00 38.04 4.63
808 831 6.098409 TGTGAGTCTTTGATTATACTCCCTCC 59.902 42.308 0.00 0.00 38.04 4.30
809 832 7.113658 TGTGAGTCTTTGATTATACTCCCTC 57.886 40.000 0.00 0.00 38.04 4.30
810 833 7.400339 TCTTGTGAGTCTTTGATTATACTCCCT 59.600 37.037 0.00 0.00 38.04 4.20
811 834 7.556844 TCTTGTGAGTCTTTGATTATACTCCC 58.443 38.462 0.00 0.00 38.04 4.30
812 835 8.470805 TCTCTTGTGAGTCTTTGATTATACTCC 58.529 37.037 0.00 0.00 40.98 3.85
813 836 9.515020 CTCTCTTGTGAGTCTTTGATTATACTC 57.485 37.037 0.00 0.00 40.98 2.59
814 837 8.474025 CCTCTCTTGTGAGTCTTTGATTATACT 58.526 37.037 0.00 0.00 40.98 2.12
815 838 8.470805 TCCTCTCTTGTGAGTCTTTGATTATAC 58.529 37.037 0.00 0.00 40.98 1.47
816 839 8.595362 TCCTCTCTTGTGAGTCTTTGATTATA 57.405 34.615 0.00 0.00 40.98 0.98
817 840 7.487822 TCCTCTCTTGTGAGTCTTTGATTAT 57.512 36.000 0.00 0.00 40.98 1.28
818 841 6.918067 TCCTCTCTTGTGAGTCTTTGATTA 57.082 37.500 0.00 0.00 40.98 1.75
819 842 5.815233 TCCTCTCTTGTGAGTCTTTGATT 57.185 39.130 0.00 0.00 40.98 2.57
820 843 5.815233 TTCCTCTCTTGTGAGTCTTTGAT 57.185 39.130 0.00 0.00 40.98 2.57
821 844 5.614324 TTTCCTCTCTTGTGAGTCTTTGA 57.386 39.130 0.00 0.00 40.98 2.69
822 845 6.666417 CAATTTCCTCTCTTGTGAGTCTTTG 58.334 40.000 0.00 0.00 40.98 2.77
871 985 1.745115 CCGAATTCGCCCTCAAGCA 60.745 57.895 22.36 0.00 38.18 3.91
882 996 1.822581 GTTTGCGTATGCCCGAATTC 58.177 50.000 4.05 0.00 41.78 2.17
908 1771 1.067295 AATGACCAGAGGGAACAGCA 58.933 50.000 0.00 0.00 38.05 4.41
916 1779 1.813513 ACGCTTTCAATGACCAGAGG 58.186 50.000 0.00 0.00 0.00 3.69
1030 1893 2.579738 GACGAGGGCCAGGAGAAC 59.420 66.667 6.18 0.00 0.00 3.01
1302 2165 3.437049 GGATCAACAGAAAGGAAGGAACG 59.563 47.826 0.00 0.00 0.00 3.95
1345 2208 8.858186 CAGCTAGATTAAACATCGTATCATCTG 58.142 37.037 0.00 0.00 0.00 2.90
1346 2209 8.031864 CCAGCTAGATTAAACATCGTATCATCT 58.968 37.037 0.00 0.00 0.00 2.90
1369 2232 3.187227 CGAACATCAAAGAACCACTCCAG 59.813 47.826 0.00 0.00 0.00 3.86
1395 2258 0.998226 CGCACGCATCAACCAAGTTG 60.998 55.000 0.96 0.96 43.99 3.16
1413 2276 5.907207 TCTGAATCCTTTCTGAACTATCCG 58.093 41.667 0.00 0.00 37.02 4.18
1448 2311 7.575414 TCTACCACATTTGCTTAAACTGAAA 57.425 32.000 0.00 0.00 0.00 2.69
1457 2320 4.858850 TCATCCATCTACCACATTTGCTT 58.141 39.130 0.00 0.00 0.00 3.91
1471 2334 2.672961 TGACGAACCACTCATCCATC 57.327 50.000 0.00 0.00 0.00 3.51
1489 2352 3.641648 CACCAACAATTACAGTGCCTTG 58.358 45.455 0.00 0.00 0.00 3.61
1512 2375 1.676678 TTGTGCTCCTAGGCGGCTAG 61.677 60.000 33.00 33.00 34.52 3.42
1513 2376 1.261938 TTTGTGCTCCTAGGCGGCTA 61.262 55.000 18.65 18.65 34.52 3.93
1514 2377 2.592993 TTTGTGCTCCTAGGCGGCT 61.593 57.895 18.33 18.33 34.52 5.52
1515 2378 2.046314 TTTGTGCTCCTAGGCGGC 60.046 61.111 16.38 16.38 34.52 6.53
1516 2379 0.321653 AAGTTTGTGCTCCTAGGCGG 60.322 55.000 2.96 0.11 34.52 6.13
1517 2380 1.523758 AAAGTTTGTGCTCCTAGGCG 58.476 50.000 2.96 0.00 34.52 5.52
1518 2381 4.944317 AGATAAAAGTTTGTGCTCCTAGGC 59.056 41.667 2.96 0.00 0.00 3.93
1519 2382 8.561738 TTTAGATAAAAGTTTGTGCTCCTAGG 57.438 34.615 0.82 0.82 0.00 3.02
1567 2430 6.631962 ACAAGGTTCTAGCAGTGTACTAATC 58.368 40.000 0.00 0.00 0.00 1.75
1590 2453 4.317804 TCGTAGATATGCGATACACGAC 57.682 45.455 0.00 0.00 45.77 4.34
1592 2455 6.033895 ACTATCGTAGATATGCGATACACG 57.966 41.667 15.19 9.48 44.65 4.49
1627 2491 9.079833 CCTTAAATTGTGATTGCAATACTGAAG 57.920 33.333 12.97 7.89 38.03 3.02
1679 2543 2.069273 CCAACTGCCTCGACTGTTAAG 58.931 52.381 0.00 0.00 31.42 1.85
1688 2552 1.804748 GAAAAGTACCCAACTGCCTCG 59.195 52.381 0.00 0.00 38.88 4.63
1814 2683 9.275231 CGTGTCTCAACTATGTACTAACTTTAG 57.725 37.037 0.00 0.00 36.82 1.85
1815 2684 9.002600 TCGTGTCTCAACTATGTACTAACTTTA 57.997 33.333 0.00 0.00 0.00 1.85
1816 2685 7.806960 GTCGTGTCTCAACTATGTACTAACTTT 59.193 37.037 0.00 0.00 0.00 2.66
1817 2686 7.303998 GTCGTGTCTCAACTATGTACTAACTT 58.696 38.462 0.00 0.00 0.00 2.66
1818 2687 6.401903 CGTCGTGTCTCAACTATGTACTAACT 60.402 42.308 0.00 0.00 0.00 2.24
1821 2690 4.330894 CCGTCGTGTCTCAACTATGTACTA 59.669 45.833 0.00 0.00 0.00 1.82
1822 2691 3.126514 CCGTCGTGTCTCAACTATGTACT 59.873 47.826 0.00 0.00 0.00 2.73
1823 2692 3.125829 TCCGTCGTGTCTCAACTATGTAC 59.874 47.826 0.00 0.00 0.00 2.90
1824 2693 3.337358 TCCGTCGTGTCTCAACTATGTA 58.663 45.455 0.00 0.00 0.00 2.29
1827 2696 1.743958 CCTCCGTCGTGTCTCAACTAT 59.256 52.381 0.00 0.00 0.00 2.12
1831 2700 1.228337 TCCCTCCGTCGTGTCTCAA 60.228 57.895 0.00 0.00 0.00 3.02
1832 2701 1.674651 CTCCCTCCGTCGTGTCTCA 60.675 63.158 0.00 0.00 0.00 3.27
1833 2702 0.392193 TACTCCCTCCGTCGTGTCTC 60.392 60.000 0.00 0.00 0.00 3.36
1834 2703 0.392729 CTACTCCCTCCGTCGTGTCT 60.393 60.000 0.00 0.00 0.00 3.41
1835 2704 0.392193 TCTACTCCCTCCGTCGTGTC 60.392 60.000 0.00 0.00 0.00 3.67
1836 2705 0.037303 TTCTACTCCCTCCGTCGTGT 59.963 55.000 0.00 0.00 0.00 4.49
1837 2706 1.334243 GATTCTACTCCCTCCGTCGTG 59.666 57.143 0.00 0.00 0.00 4.35
1838 2707 1.212441 AGATTCTACTCCCTCCGTCGT 59.788 52.381 0.00 0.00 0.00 4.34
1850 2719 5.782893 ACAGGTCTGATGCTAGATTCTAC 57.217 43.478 4.84 0.00 0.00 2.59
1878 2754 3.399330 CTCGGTTACAGTTCATGTTGGT 58.601 45.455 0.00 0.00 39.96 3.67
1896 2772 3.734735 GCCTTTATTACTTAGTCGCCTCG 59.265 47.826 0.00 0.00 0.00 4.63
1927 4394 4.582701 ATGTCCGATTTTTGCAACTTCA 57.417 36.364 0.00 0.00 0.00 3.02
1963 4430 7.566760 TGACAACTGACAACAAATGACTATT 57.433 32.000 0.00 0.00 0.00 1.73
2020 4487 8.362639 AGTTATTTTAAGTTCGTCAGTAGTCCA 58.637 33.333 0.00 0.00 0.00 4.02
2048 4517 6.316140 TCAAGTAAAAGATTCCGATCATGTGG 59.684 38.462 0.00 0.00 34.60 4.17
2081 4550 2.362077 GGAACCAGAAAAGCAAAGCAGA 59.638 45.455 0.00 0.00 0.00 4.26
2105 4574 5.433526 ACTGCCTAGTTACAAGTGAACAAA 58.566 37.500 0.00 0.00 31.66 2.83
2106 4575 5.031066 ACTGCCTAGTTACAAGTGAACAA 57.969 39.130 0.00 0.00 31.66 2.83
2158 4627 3.053826 AGTTGGTTGAGGTTTAGAGGGT 58.946 45.455 0.00 0.00 0.00 4.34
2164 4633 5.376756 AGTGGTTAGTTGGTTGAGGTTTA 57.623 39.130 0.00 0.00 0.00 2.01
2623 5167 4.089923 GCAACCAAAACTAATCATTCGCAC 59.910 41.667 0.00 0.00 0.00 5.34
2702 5246 4.229096 CAAACAGATGTTTCCGACCATTG 58.771 43.478 7.96 0.00 45.54 2.82
2708 5252 2.034053 GCCAACAAACAGATGTTTCCGA 59.966 45.455 7.96 0.00 45.54 4.55
2714 5258 2.571212 TCGAAGCCAACAAACAGATGT 58.429 42.857 0.00 0.00 34.24 3.06
2858 5402 6.461788 GGAAGTGCCCAACTGTAATTTTTGTA 60.462 38.462 0.00 0.00 39.81 2.41
2897 5441 6.691508 ACTTTTTCCTGATTCTGTTAATGCC 58.308 36.000 0.00 0.00 0.00 4.40
2903 5447 7.944554 TCCTTGATACTTTTTCCTGATTCTGTT 59.055 33.333 0.00 0.00 0.00 3.16
2939 5483 4.125703 AGTATGCTGCTAATGAGTGCTTC 58.874 43.478 0.00 0.00 0.00 3.86
3056 5600 2.814805 AGCCTTGGTGCATGTTAGAT 57.185 45.000 0.00 0.00 0.00 1.98
3083 5627 0.037790 AGTTCTCTTCAGCACTCGGC 60.038 55.000 0.00 0.00 45.30 5.54
3123 5667 1.699634 CCACTCCCAGAACTCCTCAAA 59.300 52.381 0.00 0.00 0.00 2.69
3394 5938 8.250143 TGGTCTTGAGTCATATATCTTTGCTA 57.750 34.615 0.00 0.00 0.00 3.49
3416 5960 1.569072 ACCACTTCAAGGTTTCCTGGT 59.431 47.619 0.00 0.00 35.33 4.00
3494 6038 1.740718 GCTCTCCAGTTCCACGGAATC 60.741 57.143 1.02 0.00 36.45 2.52
3650 6194 1.543802 TGGATGCCCATCACGAAAAAC 59.456 47.619 10.17 0.00 39.54 2.43
3704 6248 4.883585 AGTGTGAAAATCAGAGCAAGAACA 59.116 37.500 0.00 0.00 0.00 3.18
3797 6341 3.568853 GTGATGTATACTGACTACCGCCT 59.431 47.826 4.17 0.00 0.00 5.52
3799 6343 4.275196 TCAGTGATGTATACTGACTACCGC 59.725 45.833 4.17 0.00 46.92 5.68
3956 6500 1.613925 GTCATGGATGCGAGGCTACTA 59.386 52.381 0.00 0.00 0.00 1.82
3959 6503 1.051008 ATGTCATGGATGCGAGGCTA 58.949 50.000 0.00 0.00 0.00 3.93
4067 6611 3.055747 TCACAATCGTAGGCAATACCACA 60.056 43.478 0.00 0.00 43.14 4.17
4076 6620 2.032178 GGCAAGAATCACAATCGTAGGC 59.968 50.000 0.00 0.00 0.00 3.93
4079 6623 1.663643 GCGGCAAGAATCACAATCGTA 59.336 47.619 0.00 0.00 0.00 3.43
4118 6662 1.899814 AGGTAGTGTTCTCGGAATGCA 59.100 47.619 0.00 0.00 0.00 3.96
4236 6780 2.293122 CCACCAAACAGAAAGCGATGAA 59.707 45.455 0.00 0.00 0.00 2.57
4250 6794 2.494073 GTGTTTCCACAGAACCACCAAA 59.506 45.455 0.00 0.00 38.96 3.28
4251 6795 2.096248 GTGTTTCCACAGAACCACCAA 58.904 47.619 0.00 0.00 38.96 3.67
4295 6839 7.490079 GCATCACAGAAGATTTGCATGATTTTA 59.510 33.333 0.00 0.00 0.00 1.52
4297 6841 5.810587 GCATCACAGAAGATTTGCATGATTT 59.189 36.000 0.00 0.00 0.00 2.17
4298 6842 5.348986 GCATCACAGAAGATTTGCATGATT 58.651 37.500 0.00 0.00 0.00 2.57
4299 6843 4.497507 CGCATCACAGAAGATTTGCATGAT 60.498 41.667 0.00 0.00 0.00 2.45
4300 6844 3.181504 CGCATCACAGAAGATTTGCATGA 60.182 43.478 0.00 0.00 0.00 3.07
4301 6845 3.105937 CGCATCACAGAAGATTTGCATG 58.894 45.455 0.00 0.00 0.00 4.06
4319 6863 2.235155 TCAGAGTAGGCATAAAACCGCA 59.765 45.455 0.00 0.00 0.00 5.69
4320 6864 2.901249 TCAGAGTAGGCATAAAACCGC 58.099 47.619 0.00 0.00 0.00 5.68
4321 6865 4.755411 TCTTCAGAGTAGGCATAAAACCG 58.245 43.478 0.00 0.00 0.00 4.44
4322 6866 7.439655 CAGTATCTTCAGAGTAGGCATAAAACC 59.560 40.741 0.00 0.00 0.00 3.27
4328 6872 6.015519 GTCATCAGTATCTTCAGAGTAGGCAT 60.016 42.308 0.00 0.00 0.00 4.40
4330 6874 5.561919 CGTCATCAGTATCTTCAGAGTAGGC 60.562 48.000 0.00 0.00 0.00 3.93
4331 6875 5.561919 GCGTCATCAGTATCTTCAGAGTAGG 60.562 48.000 0.00 0.00 0.00 3.18
4359 6915 3.102515 GCACAGCTGCAAGATTGTG 57.897 52.632 15.27 12.88 46.89 3.33
4397 6953 1.992519 GAGCAGAGGGTCCATGGCAT 61.993 60.000 6.96 0.00 35.49 4.40
4478 7034 3.420893 CCCTGAAACAGCTAAATGGACA 58.579 45.455 0.00 0.00 0.00 4.02
4537 7139 1.785041 TTCGTCTGCAGTGCCTTTGC 61.785 55.000 14.67 0.00 41.86 3.68
4538 7140 0.236711 CTTCGTCTGCAGTGCCTTTG 59.763 55.000 14.67 0.07 0.00 2.77
4539 7141 1.510480 GCTTCGTCTGCAGTGCCTTT 61.510 55.000 14.67 0.00 0.00 3.11
4540 7142 1.963338 GCTTCGTCTGCAGTGCCTT 60.963 57.895 14.67 0.00 0.00 4.35
4541 7143 2.358003 GCTTCGTCTGCAGTGCCT 60.358 61.111 14.67 0.00 0.00 4.75
4542 7144 2.666190 TGCTTCGTCTGCAGTGCC 60.666 61.111 14.67 2.17 35.31 5.01
4543 7145 2.553268 GTGCTTCGTCTGCAGTGC 59.447 61.111 14.67 8.58 41.41 4.40
4544 7146 2.661566 CGGTGCTTCGTCTGCAGTG 61.662 63.158 14.67 8.01 41.41 3.66
4545 7147 2.356313 CGGTGCTTCGTCTGCAGT 60.356 61.111 14.67 0.00 41.41 4.40
4546 7148 2.356313 ACGGTGCTTCGTCTGCAG 60.356 61.111 7.63 7.63 41.41 4.41
4547 7149 2.661537 CACGGTGCTTCGTCTGCA 60.662 61.111 0.00 0.00 41.86 4.41
4548 7150 4.077188 GCACGGTGCTTCGTCTGC 62.077 66.667 25.08 0.00 41.86 4.26
4557 7159 0.234884 GCCGAAATATAGCACGGTGC 59.765 55.000 25.00 25.00 45.91 5.01
4558 7160 1.526887 CTGCCGAAATATAGCACGGTG 59.473 52.381 3.15 3.15 45.91 4.94
4559 7161 1.411246 TCTGCCGAAATATAGCACGGT 59.589 47.619 0.00 0.00 45.91 4.83
4560 7162 2.061773 CTCTGCCGAAATATAGCACGG 58.938 52.381 0.00 0.00 46.74 4.94
4561 7163 2.743938 ACTCTGCCGAAATATAGCACG 58.256 47.619 0.00 0.00 32.06 5.34
4562 7164 3.303395 GCAACTCTGCCGAAATATAGCAC 60.303 47.826 0.00 0.00 43.26 4.40
4563 7165 2.872245 GCAACTCTGCCGAAATATAGCA 59.128 45.455 0.00 0.00 43.26 3.49
4564 7166 2.096713 CGCAACTCTGCCGAAATATAGC 60.097 50.000 0.00 0.00 46.56 2.97
4565 7167 3.381045 TCGCAACTCTGCCGAAATATAG 58.619 45.455 0.00 0.00 46.56 1.31
4566 7168 3.446310 TCGCAACTCTGCCGAAATATA 57.554 42.857 0.00 0.00 46.56 0.86
4567 7169 2.309528 TCGCAACTCTGCCGAAATAT 57.690 45.000 0.00 0.00 46.56 1.28
4568 7170 1.999735 CTTCGCAACTCTGCCGAAATA 59.000 47.619 0.00 0.00 46.56 1.40
4569 7171 0.798776 CTTCGCAACTCTGCCGAAAT 59.201 50.000 0.00 0.00 46.56 2.17
4570 7172 1.227999 CCTTCGCAACTCTGCCGAAA 61.228 55.000 0.00 0.00 46.56 3.46
4571 7173 1.667830 CCTTCGCAACTCTGCCGAA 60.668 57.895 0.00 0.00 46.56 4.30
4572 7174 2.048222 CCTTCGCAACTCTGCCGA 60.048 61.111 0.00 0.00 46.56 5.54
4573 7175 3.793144 GCCTTCGCAACTCTGCCG 61.793 66.667 0.00 0.00 46.56 5.69
4574 7176 2.669569 TGCCTTCGCAACTCTGCC 60.670 61.111 0.00 0.00 46.56 4.85
4655 7271 8.286097 CAGATCTACTCTCCAAAAGAAACAAAC 58.714 37.037 0.00 0.00 32.23 2.93
4713 7330 3.044235 TGTCCAGTACAATGCTGACAG 57.956 47.619 0.00 0.00 34.29 3.51
4753 7370 3.619038 CCCTAGTTCTGAAGAAATGACGC 59.381 47.826 3.39 0.00 35.58 5.19
4788 7405 7.595819 TCAAAGAATTTCACCCAGTGTTAAT 57.404 32.000 0.00 0.00 35.03 1.40
4799 7416 3.243839 TGCAAGGGCTCAAAGAATTTCAC 60.244 43.478 0.00 0.00 37.23 3.18
4855 7493 2.097036 TGAGTCGGACGACATTACCAT 58.903 47.619 24.48 4.09 46.76 3.55
4860 7498 0.526662 GAGGTGAGTCGGACGACATT 59.473 55.000 24.48 6.95 46.76 2.71
4879 7523 1.068127 GCATGCTAAAGCTTCCATGGG 59.932 52.381 24.20 0.00 42.66 4.00
4927 7571 9.167311 GAGATTTCTTGATTCTACCTAGCAAAA 57.833 33.333 0.00 0.00 0.00 2.44
4936 7580 9.388506 TCCATTTCTGAGATTTCTTGATTCTAC 57.611 33.333 0.00 0.00 0.00 2.59
4941 7585 8.467598 CAACATCCATTTCTGAGATTTCTTGAT 58.532 33.333 0.00 0.00 0.00 2.57
4950 7594 3.084039 GGTGCAACATCCATTTCTGAGA 58.916 45.455 0.00 0.00 39.98 3.27
4971 7625 5.765182 AGTACAAATGACTGAACAAAGAGGG 59.235 40.000 0.00 0.00 0.00 4.30
4978 7632 4.974645 AGGGAGTACAAATGACTGAACA 57.025 40.909 0.00 0.00 0.00 3.18
4979 7633 5.063880 ACAAGGGAGTACAAATGACTGAAC 58.936 41.667 0.00 0.00 0.00 3.18
4981 7635 4.346709 TGACAAGGGAGTACAAATGACTGA 59.653 41.667 0.00 0.00 0.00 3.41
4982 7636 4.641396 TGACAAGGGAGTACAAATGACTG 58.359 43.478 0.00 0.00 0.00 3.51
4983 7637 4.974645 TGACAAGGGAGTACAAATGACT 57.025 40.909 0.00 0.00 0.00 3.41
4984 7638 6.016276 ACAATTGACAAGGGAGTACAAATGAC 60.016 38.462 13.59 0.00 0.00 3.06
4985 7639 6.068010 ACAATTGACAAGGGAGTACAAATGA 58.932 36.000 13.59 0.00 0.00 2.57
4986 7640 6.331369 ACAATTGACAAGGGAGTACAAATG 57.669 37.500 13.59 0.00 0.00 2.32
4987 7641 6.659242 CCTACAATTGACAAGGGAGTACAAAT 59.341 38.462 13.59 0.00 0.00 2.32
4988 7642 6.001460 CCTACAATTGACAAGGGAGTACAAA 58.999 40.000 13.59 0.00 0.00 2.83
4989 7643 5.556915 CCTACAATTGACAAGGGAGTACAA 58.443 41.667 13.59 0.00 0.00 2.41
4990 7644 5.160607 CCTACAATTGACAAGGGAGTACA 57.839 43.478 13.59 0.00 0.00 2.90
5006 7660 1.144093 CGGGCATAATTCCCCCTACAA 59.856 52.381 6.46 0.00 40.75 2.41
5040 7708 2.954989 GGAGGAATTTCCATTCTCCAGC 59.045 50.000 17.57 0.00 39.61 4.85
5048 7716 6.104691 ACCTGTAATATGGGAGGAATTTCCAT 59.895 38.462 17.57 5.52 43.08 3.41
5052 7720 8.122481 AGAAAACCTGTAATATGGGAGGAATTT 58.878 33.333 0.00 0.00 0.00 1.82
5064 7732 4.783227 AGCCAGAGGAGAAAACCTGTAATA 59.217 41.667 0.00 0.00 40.73 0.98
5117 7790 0.594602 GTCGGGTTTGGCCAGTTTAC 59.405 55.000 5.11 3.09 39.65 2.01
5132 7805 2.496070 TGTAACATCCAGAGAAGGTCGG 59.504 50.000 0.00 0.00 0.00 4.79
5136 7809 4.464244 TGAGAGTGTAACATCCAGAGAAGG 59.536 45.833 0.00 0.00 41.43 3.46
5138 7811 4.464244 CCTGAGAGTGTAACATCCAGAGAA 59.536 45.833 0.00 0.00 41.43 2.87
5151 7824 1.277557 GCAGTTCATCCCTGAGAGTGT 59.722 52.381 0.00 0.00 31.68 3.55
5171 7844 6.579865 AGGGAGTATACATAAGACGTTTTGG 58.420 40.000 5.50 0.00 0.00 3.28
5185 7858 3.899726 TGTCCAGACAGAGGGAGTATAC 58.100 50.000 0.00 0.00 36.21 1.47
5201 7874 3.181494 CGGACGTATCTAACACATGTCCA 60.181 47.826 11.58 0.00 45.02 4.02
5207 7880 4.022935 ACTCAAACGGACGTATCTAACACA 60.023 41.667 0.00 0.00 0.00 3.72
5221 7894 4.377022 CGGAATTAGTTGTCACTCAAACGG 60.377 45.833 0.00 0.00 37.81 4.44
5230 7903 1.894466 TCCGTCCGGAATTAGTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
5231 7904 2.660189 TCCGTCCGGAATTAGTTGTC 57.340 50.000 5.23 0.00 42.05 3.18
5248 7921 2.475519 CGTCAAAACACATACGCCATCC 60.476 50.000 0.00 0.00 0.00 3.51
5249 7922 2.769376 CGTCAAAACACATACGCCATC 58.231 47.619 0.00 0.00 0.00 3.51
5250 7923 2.892373 CGTCAAAACACATACGCCAT 57.108 45.000 0.00 0.00 0.00 4.40
5254 7927 1.529438 ACAGGCGTCAAAACACATACG 59.471 47.619 0.00 0.00 38.34 3.06
5255 7928 2.916111 CACAGGCGTCAAAACACATAC 58.084 47.619 0.00 0.00 0.00 2.39
5257 7930 0.030638 GCACAGGCGTCAAAACACAT 59.969 50.000 0.00 0.00 0.00 3.21
5258 7931 1.431440 GCACAGGCGTCAAAACACA 59.569 52.632 0.00 0.00 0.00 3.72
5259 7932 4.302154 GCACAGGCGTCAAAACAC 57.698 55.556 0.00 0.00 0.00 3.32
5308 8013 0.528924 TGGTCTCATTACCACGACGG 59.471 55.000 0.00 0.00 44.68 4.79
5309 8014 1.469251 CCTGGTCTCATTACCACGACG 60.469 57.143 0.00 0.00 44.68 5.12
5333 8038 4.699257 TCAGTGCTTTGTTTGGCAAAATTT 59.301 33.333 15.29 0.00 45.35 1.82
5346 9518 5.428496 TCTTTCATTCACTCAGTGCTTTG 57.572 39.130 0.00 0.00 32.98 2.77
5360 9532 2.423185 TGGCGCGATGATTTCTTTCATT 59.577 40.909 12.10 0.00 36.48 2.57
5361 9533 2.016318 TGGCGCGATGATTTCTTTCAT 58.984 42.857 12.10 0.00 39.04 2.57
5362 9534 1.130373 GTGGCGCGATGATTTCTTTCA 59.870 47.619 12.10 0.00 0.00 2.69
5363 9535 1.815132 GTGGCGCGATGATTTCTTTC 58.185 50.000 12.10 0.00 0.00 2.62
5364 9536 0.096976 CGTGGCGCGATGATTTCTTT 59.903 50.000 16.70 0.00 44.77 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.