Multiple sequence alignment - TraesCS3B01G433100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G433100 chr3B 100.000 3665 0 0 1 3665 672102249 672098585 0.000000e+00 6769.0
1 TraesCS3B01G433100 chr3B 94.928 138 7 0 567 704 760589117 760588980 2.220000e-52 217.0
2 TraesCS3B01G433100 chr3D 95.268 2198 86 9 698 2891 509250554 509248371 0.000000e+00 3467.0
3 TraesCS3B01G433100 chr3D 91.602 512 31 7 67 575 509251054 509250552 0.000000e+00 697.0
4 TraesCS3B01G433100 chr3A 96.287 1966 71 1 698 2661 646850604 646848639 0.000000e+00 3225.0
5 TraesCS3B01G433100 chr3A 89.251 521 38 7 67 575 646851116 646850602 1.440000e-178 636.0
6 TraesCS3B01G433100 chr3A 85.437 309 20 12 2724 3025 646848404 646848114 7.690000e-77 298.0
7 TraesCS3B01G433100 chr3A 83.401 247 20 11 3357 3589 646847881 646847642 3.710000e-50 209.0
8 TraesCS3B01G433100 chr3A 90.526 95 3 2 3568 3662 646847625 646847537 1.790000e-23 121.0
9 TraesCS3B01G433100 chr1A 88.148 1890 205 12 774 2658 448913512 448915387 0.000000e+00 2231.0
10 TraesCS3B01G433100 chr1B 87.951 1884 216 9 774 2655 469969183 469971057 0.000000e+00 2211.0
11 TraesCS3B01G433100 chr1D 87.447 1896 218 12 774 2658 348051612 348053498 0.000000e+00 2165.0
12 TraesCS3B01G433100 chr1D 94.326 141 7 1 569 709 279325208 279325069 7.970000e-52 215.0
13 TraesCS3B01G433100 chr7B 91.000 400 25 5 67 461 657583938 657583545 2.510000e-146 529.0
14 TraesCS3B01G433100 chr7B 89.801 402 32 5 64 461 74048215 74048611 1.170000e-139 507.0
15 TraesCS3B01G433100 chr7A 90.500 400 27 5 67 461 580362961 580363354 5.430000e-143 518.0
16 TraesCS3B01G433100 chr5B 90.500 400 27 5 67 461 538080093 538079700 5.430000e-143 518.0
17 TraesCS3B01G433100 chr5B 90.500 400 27 5 67 461 669145689 669145296 5.430000e-143 518.0
18 TraesCS3B01G433100 chr5B 96.377 138 4 1 564 700 96878932 96879069 3.680000e-55 226.0
19 TraesCS3B01G433100 chr5B 94.928 138 6 1 563 700 19792152 19792016 7.970000e-52 215.0
20 TraesCS3B01G433100 chr5A 90.074 403 28 6 64 461 709007864 709008259 2.520000e-141 512.0
21 TraesCS3B01G433100 chr2A 90.885 384 24 5 83 461 42741803 42741426 4.220000e-139 505.0
22 TraesCS3B01G433100 chr2A 100.000 30 0 0 2553 2582 675389515 675389544 5.110000e-04 56.5
23 TraesCS3B01G433100 chr5D 96.296 135 5 0 566 700 204877376 204877242 4.760000e-54 222.0
24 TraesCS3B01G433100 chr5D 96.923 130 4 0 571 700 455607926 455608055 6.160000e-53 219.0
25 TraesCS3B01G433100 chr7D 95.620 137 5 1 564 700 183856304 183856439 6.160000e-53 219.0
26 TraesCS3B01G433100 chr2D 93.617 141 9 0 569 709 592468114 592467974 1.030000e-50 211.0
27 TraesCS3B01G433100 chr2D 88.554 166 15 4 535 700 349487720 349487881 8.030000e-47 198.0
28 TraesCS3B01G433100 chr2D 100.000 29 0 0 2552 2580 427020686 427020714 2.000000e-03 54.7
29 TraesCS3B01G433100 chr4A 100.000 31 0 0 2552 2582 230353008 230353038 1.420000e-04 58.4
30 TraesCS3B01G433100 chr2B 100.000 29 0 0 2552 2580 399652329 399652301 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G433100 chr3B 672098585 672102249 3664 True 6769.0 6769 100.0000 1 3665 1 chr3B.!!$R1 3664
1 TraesCS3B01G433100 chr3D 509248371 509251054 2683 True 2082.0 3467 93.4350 67 2891 2 chr3D.!!$R1 2824
2 TraesCS3B01G433100 chr3A 646847537 646851116 3579 True 897.8 3225 88.9804 67 3662 5 chr3A.!!$R1 3595
3 TraesCS3B01G433100 chr1A 448913512 448915387 1875 False 2231.0 2231 88.1480 774 2658 1 chr1A.!!$F1 1884
4 TraesCS3B01G433100 chr1B 469969183 469971057 1874 False 2211.0 2211 87.9510 774 2655 1 chr1B.!!$F1 1881
5 TraesCS3B01G433100 chr1D 348051612 348053498 1886 False 2165.0 2165 87.4470 774 2658 1 chr1D.!!$F1 1884

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.037326 CTGCAACCTAGCGGAAGACA 60.037 55.0 0.0 0.0 43.63 3.41 F
587 602 0.178955 TGTTGTACTCCCTCCGTCCA 60.179 55.0 0.0 0.0 0.00 4.02 F
589 604 0.406750 TTGTACTCCCTCCGTCCAGA 59.593 55.0 0.0 0.0 0.00 3.86 F
2022 2043 0.458260 GGGACAACTTGTTTGGCGTT 59.542 50.0 0.0 0.0 45.47 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1566 1587 3.004315 GTCTTCCGGCAACAAAATCTGAA 59.996 43.478 0.00 0.00 0.00 3.02 R
2409 2430 0.867746 TCATGTTCAGCAGCACGAAC 59.132 50.000 16.95 16.95 41.53 3.95 R
2445 2466 1.195115 CCTCGTCAATCCCTTCCTCA 58.805 55.000 0.00 0.00 0.00 3.86 R
3093 3301 0.036010 CTTCGCTGAACCAGGTGGAT 60.036 55.000 2.10 0.00 38.94 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.532896 TTCTTCTGCAACCTAGCGG 57.467 52.632 0.00 0.00 42.28 5.52
22 23 2.666085 TCTGCAACCTAGCGGAAGA 58.334 52.632 0.00 0.00 46.29 2.87
23 24 0.246635 TCTGCAACCTAGCGGAAGAC 59.753 55.000 0.00 0.00 46.29 3.01
24 25 0.037326 CTGCAACCTAGCGGAAGACA 60.037 55.000 0.00 0.00 43.63 3.41
25 26 0.394938 TGCAACCTAGCGGAAGACAA 59.605 50.000 0.00 0.00 37.31 3.18
26 27 1.079503 GCAACCTAGCGGAAGACAAG 58.920 55.000 0.00 0.00 0.00 3.16
27 28 1.608283 GCAACCTAGCGGAAGACAAGT 60.608 52.381 0.00 0.00 0.00 3.16
28 29 2.353406 GCAACCTAGCGGAAGACAAGTA 60.353 50.000 0.00 0.00 0.00 2.24
29 30 3.512680 CAACCTAGCGGAAGACAAGTAG 58.487 50.000 0.00 0.00 0.00 2.57
30 31 2.805194 ACCTAGCGGAAGACAAGTAGT 58.195 47.619 0.00 0.00 0.00 2.73
31 32 3.960571 ACCTAGCGGAAGACAAGTAGTA 58.039 45.455 0.00 0.00 0.00 1.82
32 33 3.693578 ACCTAGCGGAAGACAAGTAGTAC 59.306 47.826 0.00 0.00 0.00 2.73
33 34 2.915738 AGCGGAAGACAAGTAGTACG 57.084 50.000 0.00 0.00 0.00 3.67
34 35 1.471684 AGCGGAAGACAAGTAGTACGG 59.528 52.381 0.00 0.00 0.00 4.02
35 36 1.200948 GCGGAAGACAAGTAGTACGGT 59.799 52.381 0.96 0.96 0.00 4.83
36 37 2.730402 GCGGAAGACAAGTAGTACGGTC 60.730 54.545 16.00 16.00 0.00 4.79
37 38 2.159462 CGGAAGACAAGTAGTACGGTCC 60.159 54.545 18.61 9.40 30.92 4.46
38 39 3.087781 GGAAGACAAGTAGTACGGTCCT 58.912 50.000 18.61 10.33 30.92 3.85
39 40 3.119566 GGAAGACAAGTAGTACGGTCCTG 60.120 52.174 18.61 6.30 30.92 3.86
40 41 3.151912 AGACAAGTAGTACGGTCCTGT 57.848 47.619 18.61 8.76 30.92 4.00
41 42 3.080319 AGACAAGTAGTACGGTCCTGTC 58.920 50.000 18.61 14.83 30.92 3.51
42 43 2.163211 GACAAGTAGTACGGTCCTGTCC 59.837 54.545 13.91 0.00 0.00 4.02
43 44 1.475682 CAAGTAGTACGGTCCTGTCCC 59.524 57.143 0.00 0.00 0.00 4.46
49 50 3.524606 CGGTCCTGTCCCGCGTAT 61.525 66.667 4.92 0.00 38.85 3.06
50 51 2.106332 GGTCCTGTCCCGCGTATG 59.894 66.667 4.92 0.00 0.00 2.39
51 52 2.718073 GGTCCTGTCCCGCGTATGT 61.718 63.158 4.92 0.00 0.00 2.29
52 53 1.386525 GGTCCTGTCCCGCGTATGTA 61.387 60.000 4.92 0.00 0.00 2.29
53 54 0.248784 GTCCTGTCCCGCGTATGTAC 60.249 60.000 4.92 0.00 0.00 2.90
54 55 0.680601 TCCTGTCCCGCGTATGTACA 60.681 55.000 4.92 0.00 0.00 2.90
55 56 0.387929 CCTGTCCCGCGTATGTACAT 59.612 55.000 13.93 13.93 0.00 2.29
56 57 1.487482 CTGTCCCGCGTATGTACATG 58.513 55.000 18.81 3.68 0.00 3.21
57 58 0.818938 TGTCCCGCGTATGTACATGT 59.181 50.000 18.81 2.69 0.00 3.21
58 59 2.022934 TGTCCCGCGTATGTACATGTA 58.977 47.619 18.81 0.08 0.00 2.29
59 60 2.223548 TGTCCCGCGTATGTACATGTAC 60.224 50.000 25.99 25.99 36.63 2.90
60 61 1.002576 TCCCGCGTATGTACATGTACG 60.003 52.381 26.59 21.45 44.68 3.67
61 62 1.401530 CCGCGTATGTACATGTACGG 58.598 55.000 26.59 23.69 42.76 4.02
62 63 0.774098 CGCGTATGTACATGTACGGC 59.226 55.000 26.59 23.65 42.76 5.68
63 64 1.598676 CGCGTATGTACATGTACGGCT 60.599 52.381 26.59 17.59 42.76 5.52
64 65 1.784856 GCGTATGTACATGTACGGCTG 59.215 52.381 26.59 18.50 42.76 4.85
65 66 2.390938 CGTATGTACATGTACGGCTGG 58.609 52.381 26.59 13.47 39.82 4.85
76 77 2.811431 TGTACGGCTGGTTTGATTTCTG 59.189 45.455 0.00 0.00 0.00 3.02
77 78 2.270352 ACGGCTGGTTTGATTTCTGA 57.730 45.000 0.00 0.00 0.00 3.27
79 80 2.154462 CGGCTGGTTTGATTTCTGAGT 58.846 47.619 0.00 0.00 0.00 3.41
136 137 0.469705 AAGTGGCCAATGTTGCTGGA 60.470 50.000 7.24 0.00 35.85 3.86
174 177 7.807977 AGGTGTCAATTTAGGTGCATATTAG 57.192 36.000 0.00 0.00 0.00 1.73
177 180 8.557029 GGTGTCAATTTAGGTGCATATTAGTAC 58.443 37.037 0.00 0.00 0.00 2.73
178 181 9.104965 GTGTCAATTTAGGTGCATATTAGTACA 57.895 33.333 0.00 0.00 0.00 2.90
179 182 9.325198 TGTCAATTTAGGTGCATATTAGTACAG 57.675 33.333 0.00 0.00 0.00 2.74
180 183 9.326413 GTCAATTTAGGTGCATATTAGTACAGT 57.674 33.333 0.00 0.00 0.00 3.55
222 225 4.162320 TCTGCTCAGTTATCTAAACCCTGG 59.838 45.833 0.00 0.00 0.00 4.45
253 258 3.403613 TCGTTTTCATCATGCCAATCG 57.596 42.857 0.00 0.00 0.00 3.34
266 271 2.418628 TGCCAATCGACTCGAAAATTCC 59.581 45.455 5.00 0.00 39.99 3.01
271 276 3.603158 TCGACTCGAAAATTCCATGGA 57.397 42.857 11.44 11.44 31.06 3.41
286 291 2.301346 CATGGACCAAATCTACCTGGC 58.699 52.381 0.00 0.00 36.03 4.85
358 363 7.365741 CAGCATGTAATTGGATCCTTATTGTC 58.634 38.462 14.23 10.44 0.00 3.18
394 399 2.399916 ATCTCTCAAGGCTTCAGTGC 57.600 50.000 0.00 0.00 0.00 4.40
436 445 4.772624 TCCACAGTTCAGACAGCTAGTTAT 59.227 41.667 0.00 0.00 0.00 1.89
437 446 5.949952 TCCACAGTTCAGACAGCTAGTTATA 59.050 40.000 0.00 0.00 0.00 0.98
533 545 5.350365 CACAGCCGTAGTAACATTACACATT 59.650 40.000 4.67 0.00 36.12 2.71
534 546 6.532302 CACAGCCGTAGTAACATTACACATTA 59.468 38.462 4.67 0.00 36.12 1.90
535 547 7.063662 CACAGCCGTAGTAACATTACACATTAA 59.936 37.037 4.67 0.00 36.12 1.40
563 578 3.963129 TCTTGTGTTTGGTTGAAGTCCT 58.037 40.909 0.00 0.00 0.00 3.85
575 590 5.761234 TGGTTGAAGTCCTGTTATGTTGTAC 59.239 40.000 0.00 0.00 0.00 2.90
576 591 5.995897 GGTTGAAGTCCTGTTATGTTGTACT 59.004 40.000 0.00 0.00 0.00 2.73
577 592 6.147328 GGTTGAAGTCCTGTTATGTTGTACTC 59.853 42.308 0.00 0.00 0.00 2.59
578 593 5.790593 TGAAGTCCTGTTATGTTGTACTCC 58.209 41.667 0.00 0.00 0.00 3.85
579 594 4.820894 AGTCCTGTTATGTTGTACTCCC 57.179 45.455 0.00 0.00 0.00 4.30
580 595 4.426704 AGTCCTGTTATGTTGTACTCCCT 58.573 43.478 0.00 0.00 0.00 4.20
581 596 4.466726 AGTCCTGTTATGTTGTACTCCCTC 59.533 45.833 0.00 0.00 0.00 4.30
582 597 3.773119 TCCTGTTATGTTGTACTCCCTCC 59.227 47.826 0.00 0.00 0.00 4.30
583 598 3.430374 CCTGTTATGTTGTACTCCCTCCG 60.430 52.174 0.00 0.00 0.00 4.63
584 599 3.167485 TGTTATGTTGTACTCCCTCCGT 58.833 45.455 0.00 0.00 0.00 4.69
585 600 3.194116 TGTTATGTTGTACTCCCTCCGTC 59.806 47.826 0.00 0.00 0.00 4.79
586 601 1.192428 ATGTTGTACTCCCTCCGTCC 58.808 55.000 0.00 0.00 0.00 4.79
587 602 0.178955 TGTTGTACTCCCTCCGTCCA 60.179 55.000 0.00 0.00 0.00 4.02
588 603 0.531200 GTTGTACTCCCTCCGTCCAG 59.469 60.000 0.00 0.00 0.00 3.86
589 604 0.406750 TTGTACTCCCTCCGTCCAGA 59.593 55.000 0.00 0.00 0.00 3.86
590 605 0.406750 TGTACTCCCTCCGTCCAGAA 59.593 55.000 0.00 0.00 0.00 3.02
591 606 1.203087 TGTACTCCCTCCGTCCAGAAA 60.203 52.381 0.00 0.00 0.00 2.52
592 607 2.108970 GTACTCCCTCCGTCCAGAAAT 58.891 52.381 0.00 0.00 0.00 2.17
593 608 2.544844 ACTCCCTCCGTCCAGAAATA 57.455 50.000 0.00 0.00 0.00 1.40
594 609 2.108970 ACTCCCTCCGTCCAGAAATAC 58.891 52.381 0.00 0.00 0.00 1.89
595 610 2.292323 ACTCCCTCCGTCCAGAAATACT 60.292 50.000 0.00 0.00 0.00 2.12
596 611 2.766828 CTCCCTCCGTCCAGAAATACTT 59.233 50.000 0.00 0.00 0.00 2.24
597 612 2.500098 TCCCTCCGTCCAGAAATACTTG 59.500 50.000 0.00 0.00 0.00 3.16
598 613 2.236395 CCCTCCGTCCAGAAATACTTGT 59.764 50.000 0.00 0.00 0.00 3.16
599 614 3.522553 CCTCCGTCCAGAAATACTTGTC 58.477 50.000 0.00 0.00 0.00 3.18
600 615 3.056107 CCTCCGTCCAGAAATACTTGTCA 60.056 47.826 0.00 0.00 0.00 3.58
601 616 4.383118 CCTCCGTCCAGAAATACTTGTCAT 60.383 45.833 0.00 0.00 0.00 3.06
602 617 4.755411 TCCGTCCAGAAATACTTGTCATC 58.245 43.478 0.00 0.00 0.00 2.92
603 618 4.221924 TCCGTCCAGAAATACTTGTCATCA 59.778 41.667 0.00 0.00 0.00 3.07
604 619 4.935205 CCGTCCAGAAATACTTGTCATCAA 59.065 41.667 0.00 0.00 0.00 2.57
605 620 5.411361 CCGTCCAGAAATACTTGTCATCAAA 59.589 40.000 0.00 0.00 32.87 2.69
606 621 6.072728 CCGTCCAGAAATACTTGTCATCAAAA 60.073 38.462 0.00 0.00 32.87 2.44
607 622 7.362056 CCGTCCAGAAATACTTGTCATCAAAAT 60.362 37.037 0.00 0.00 32.87 1.82
608 623 7.482743 CGTCCAGAAATACTTGTCATCAAAATG 59.517 37.037 0.00 0.00 32.87 2.32
609 624 8.514594 GTCCAGAAATACTTGTCATCAAAATGA 58.485 33.333 0.00 0.00 39.63 2.57
610 625 9.076781 TCCAGAAATACTTGTCATCAAAATGAA 57.923 29.630 0.00 0.00 43.42 2.57
611 626 9.865321 CCAGAAATACTTGTCATCAAAATGAAT 57.135 29.630 0.00 0.00 43.42 2.57
617 632 9.865321 ATACTTGTCATCAAAATGAATCAAAGG 57.135 29.630 0.00 0.00 43.42 3.11
618 633 7.156673 ACTTGTCATCAAAATGAATCAAAGGG 58.843 34.615 0.00 0.00 43.42 3.95
619 634 6.040209 TGTCATCAAAATGAATCAAAGGGG 57.960 37.500 0.00 0.00 43.42 4.79
620 635 5.779260 TGTCATCAAAATGAATCAAAGGGGA 59.221 36.000 0.00 0.00 43.42 4.81
621 636 6.441284 TGTCATCAAAATGAATCAAAGGGGAT 59.559 34.615 0.00 0.00 43.42 3.85
622 637 6.759827 GTCATCAAAATGAATCAAAGGGGATG 59.240 38.462 0.00 0.00 43.42 3.51
623 638 6.441284 TCATCAAAATGAATCAAAGGGGATGT 59.559 34.615 11.87 0.00 38.97 3.06
624 639 7.618907 TCATCAAAATGAATCAAAGGGGATGTA 59.381 33.333 11.87 2.14 38.97 2.29
625 640 7.976414 TCAAAATGAATCAAAGGGGATGTAT 57.024 32.000 0.00 0.00 0.00 2.29
626 641 8.010733 TCAAAATGAATCAAAGGGGATGTATC 57.989 34.615 0.00 0.00 0.00 2.24
627 642 7.840716 TCAAAATGAATCAAAGGGGATGTATCT 59.159 33.333 0.00 0.00 0.00 1.98
628 643 9.135189 CAAAATGAATCAAAGGGGATGTATCTA 57.865 33.333 0.00 0.00 0.00 1.98
629 644 8.930846 AAATGAATCAAAGGGGATGTATCTAG 57.069 34.615 0.00 0.00 0.00 2.43
630 645 7.878621 ATGAATCAAAGGGGATGTATCTAGA 57.121 36.000 0.00 0.00 0.00 2.43
631 646 7.878621 TGAATCAAAGGGGATGTATCTAGAT 57.121 36.000 10.73 10.73 0.00 1.98
632 647 7.683578 TGAATCAAAGGGGATGTATCTAGATG 58.316 38.462 15.79 0.00 0.00 2.90
633 648 7.293299 TGAATCAAAGGGGATGTATCTAGATGT 59.707 37.037 15.79 1.25 0.00 3.06
634 649 8.742125 AATCAAAGGGGATGTATCTAGATGTA 57.258 34.615 15.79 4.44 0.00 2.29
635 650 8.923838 ATCAAAGGGGATGTATCTAGATGTAT 57.076 34.615 15.79 9.11 0.00 2.29
664 679 8.658840 AGTTCTAGATACATCCCTCTTTATCC 57.341 38.462 0.00 0.00 0.00 2.59
665 680 8.235230 AGTTCTAGATACATCCCTCTTTATCCA 58.765 37.037 0.00 0.00 0.00 3.41
666 681 9.041354 GTTCTAGATACATCCCTCTTTATCCAT 57.959 37.037 0.00 0.00 0.00 3.41
667 682 9.621239 TTCTAGATACATCCCTCTTTATCCATT 57.379 33.333 0.00 0.00 0.00 3.16
668 683 9.621239 TCTAGATACATCCCTCTTTATCCATTT 57.379 33.333 0.00 0.00 0.00 2.32
670 685 8.930846 AGATACATCCCTCTTTATCCATTTTG 57.069 34.615 0.00 0.00 0.00 2.44
671 686 8.727149 AGATACATCCCTCTTTATCCATTTTGA 58.273 33.333 0.00 0.00 0.00 2.69
672 687 9.525826 GATACATCCCTCTTTATCCATTTTGAT 57.474 33.333 0.00 0.00 0.00 2.57
673 688 7.592885 ACATCCCTCTTTATCCATTTTGATG 57.407 36.000 0.00 0.00 33.80 3.07
674 689 7.356680 ACATCCCTCTTTATCCATTTTGATGA 58.643 34.615 0.00 0.00 32.39 2.92
675 690 7.286316 ACATCCCTCTTTATCCATTTTGATGAC 59.714 37.037 0.00 0.00 32.39 3.06
676 691 6.730447 TCCCTCTTTATCCATTTTGATGACA 58.270 36.000 0.00 0.00 0.00 3.58
677 692 7.181361 TCCCTCTTTATCCATTTTGATGACAA 58.819 34.615 0.00 0.00 0.00 3.18
678 693 7.340232 TCCCTCTTTATCCATTTTGATGACAAG 59.660 37.037 0.00 0.00 37.32 3.16
679 694 7.123247 CCCTCTTTATCCATTTTGATGACAAGT 59.877 37.037 0.00 0.00 37.32 3.16
680 695 9.177608 CCTCTTTATCCATTTTGATGACAAGTA 57.822 33.333 0.00 0.00 37.32 2.24
686 701 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
687 702 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
688 703 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
689 704 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
690 705 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
691 706 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
692 707 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
693 708 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
694 709 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
695 710 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
696 711 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
697 712 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
698 713 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
699 714 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
735 750 8.233868 TGTGTCATTGATTTCCTATGTAAAACG 58.766 33.333 0.00 0.00 31.38 3.60
744 759 9.704098 GATTTCCTATGTAAAACGATCACTTTC 57.296 33.333 0.00 0.00 0.00 2.62
1250 1271 2.238144 CTGATGGTGATGGGAGTTCTGT 59.762 50.000 0.00 0.00 0.00 3.41
1518 1539 2.047939 GGTGCTGCCAATGTTGCC 60.048 61.111 0.00 0.00 37.17 4.52
1566 1587 5.710646 TCTCAGCTCAAGGAGGTAGATATT 58.289 41.667 0.00 0.00 38.40 1.28
1659 1680 3.886505 CAGGGTCTGTACTGAGATACCTC 59.113 52.174 2.23 0.00 36.86 3.85
2022 2043 0.458260 GGGACAACTTGTTTGGCGTT 59.542 50.000 0.00 0.00 45.47 4.84
2049 2070 2.383527 GGTGGCTCTCAGCGAAACG 61.384 63.158 0.00 0.00 43.62 3.60
2097 2118 0.601558 TGTACCTCAGCGACCTCAAC 59.398 55.000 0.00 0.00 0.00 3.18
2406 2427 3.660111 GCGGTCGCAAACAAGCCT 61.660 61.111 10.67 0.00 41.49 4.58
2409 2430 2.644992 GTCGCAAACAAGCCTGGG 59.355 61.111 0.00 0.00 0.00 4.45
2445 2466 0.892755 TGAACGCGAACTACATCCCT 59.107 50.000 15.93 0.00 0.00 4.20
2646 2676 1.422161 AGCTGCAGGACCTGAAGGTT 61.422 55.000 26.11 9.78 44.49 3.50
2664 2694 0.040646 TTGAGGCGGAGGAGGACTAA 59.959 55.000 0.00 0.00 0.00 2.24
2669 2699 2.134933 CGGAGGAGGACTAAGCCCC 61.135 68.421 0.00 0.00 0.00 5.80
2696 2726 3.957383 TTTTTGCTCCGGTTTCAGC 57.043 47.368 0.00 3.09 36.08 4.26
2699 2729 2.264005 TTTGCTCCGGTTTCAGCTTA 57.736 45.000 13.44 0.26 36.53 3.09
2743 2945 5.008019 GCTGGAATTTCGCAGAATGATAAGA 59.992 40.000 15.05 0.00 45.90 2.10
2771 2974 1.973281 CTGTGGCCGGCTCAATTGT 60.973 57.895 28.56 0.00 0.00 2.71
2772 2975 2.203972 CTGTGGCCGGCTCAATTGTG 62.204 60.000 28.56 9.77 0.00 3.33
2895 3099 0.528470 GTCCTGGTTCTCTGGTCGAG 59.472 60.000 0.00 0.00 41.30 4.04
2896 3100 0.612174 TCCTGGTTCTCTGGTCGAGG 60.612 60.000 0.00 0.00 40.30 4.63
2897 3101 0.900647 CCTGGTTCTCTGGTCGAGGT 60.901 60.000 0.00 0.00 40.30 3.85
2898 3102 0.528470 CTGGTTCTCTGGTCGAGGTC 59.472 60.000 0.00 0.00 40.30 3.85
2899 3103 1.241990 TGGTTCTCTGGTCGAGGTCG 61.242 60.000 0.00 0.00 40.30 4.79
2900 3104 1.507174 GTTCTCTGGTCGAGGTCGG 59.493 63.158 0.00 0.00 40.30 4.79
2901 3105 1.677966 TTCTCTGGTCGAGGTCGGG 60.678 63.158 0.00 0.00 40.30 5.14
2902 3106 3.827898 CTCTGGTCGAGGTCGGGC 61.828 72.222 0.00 0.00 40.29 6.13
2920 3127 2.815158 GGCCTGGACCCTTAAATCAAA 58.185 47.619 0.00 0.00 0.00 2.69
2960 3168 6.728366 ACCTATCTATATCCTGTGAGACCT 57.272 41.667 0.00 0.00 0.00 3.85
2969 3177 2.163509 CCTGTGAGACCTCTCTTTCGA 58.836 52.381 4.00 0.00 43.25 3.71
2974 3182 2.230025 TGAGACCTCTCTTTCGAAGCTG 59.770 50.000 0.00 0.00 43.25 4.24
2980 3188 4.109050 CCTCTCTTTCGAAGCTGTGATAC 58.891 47.826 0.00 0.00 0.00 2.24
2981 3189 4.380973 CCTCTCTTTCGAAGCTGTGATACA 60.381 45.833 0.00 0.00 0.00 2.29
2998 3206 4.156739 TGATACATGTGGCGTGCATTTTTA 59.843 37.500 9.11 0.00 0.00 1.52
2999 3207 3.591196 ACATGTGGCGTGCATTTTTAT 57.409 38.095 0.00 0.00 0.00 1.40
3001 3209 4.314121 ACATGTGGCGTGCATTTTTATTT 58.686 34.783 0.00 0.00 0.00 1.40
3002 3210 4.388469 ACATGTGGCGTGCATTTTTATTTC 59.612 37.500 0.00 0.00 0.00 2.17
3003 3211 4.250116 TGTGGCGTGCATTTTTATTTCT 57.750 36.364 0.00 0.00 0.00 2.52
3004 3212 4.626042 TGTGGCGTGCATTTTTATTTCTT 58.374 34.783 0.00 0.00 0.00 2.52
3005 3213 4.683781 TGTGGCGTGCATTTTTATTTCTTC 59.316 37.500 0.00 0.00 0.00 2.87
3006 3214 4.923281 GTGGCGTGCATTTTTATTTCTTCT 59.077 37.500 0.00 0.00 0.00 2.85
3007 3215 5.405269 GTGGCGTGCATTTTTATTTCTTCTT 59.595 36.000 0.00 0.00 0.00 2.52
3008 3216 5.404968 TGGCGTGCATTTTTATTTCTTCTTG 59.595 36.000 0.00 0.00 0.00 3.02
3013 3221 7.731302 CGTGCATTTTTATTTCTTCTTGTTTCG 59.269 33.333 0.00 0.00 0.00 3.46
3022 3230 0.662619 TTCTTGTTTCGGTGCTGCAG 59.337 50.000 10.11 10.11 0.00 4.41
3025 3233 1.267806 CTTGTTTCGGTGCTGCAGATT 59.732 47.619 20.43 0.00 0.00 2.40
3026 3234 2.177394 TGTTTCGGTGCTGCAGATTA 57.823 45.000 20.43 0.00 0.00 1.75
3028 3236 2.419673 TGTTTCGGTGCTGCAGATTATG 59.580 45.455 20.43 2.25 0.00 1.90
3029 3237 2.677836 GTTTCGGTGCTGCAGATTATGA 59.322 45.455 20.43 4.90 0.00 2.15
3030 3238 2.916702 TCGGTGCTGCAGATTATGAT 57.083 45.000 20.43 0.00 0.00 2.45
3031 3239 3.198409 TCGGTGCTGCAGATTATGATT 57.802 42.857 20.43 0.00 0.00 2.57
3032 3240 3.544684 TCGGTGCTGCAGATTATGATTT 58.455 40.909 20.43 0.00 0.00 2.17
3033 3241 4.702831 TCGGTGCTGCAGATTATGATTTA 58.297 39.130 20.43 0.00 0.00 1.40
3034 3242 4.511454 TCGGTGCTGCAGATTATGATTTAC 59.489 41.667 20.43 0.00 0.00 2.01
3036 3244 4.273480 GGTGCTGCAGATTATGATTTACGT 59.727 41.667 20.43 0.00 0.00 3.57
3037 3245 5.200454 GTGCTGCAGATTATGATTTACGTG 58.800 41.667 20.43 0.00 0.00 4.49
3038 3246 4.214437 GCTGCAGATTATGATTTACGTGC 58.786 43.478 20.43 0.00 0.00 5.34
3040 3248 3.247411 TGCAGATTATGATTTACGTGCCG 59.753 43.478 0.00 0.00 0.00 5.69
3041 3249 3.247648 GCAGATTATGATTTACGTGCCGT 59.752 43.478 0.00 5.58 44.35 5.68
3043 3251 3.247648 AGATTATGATTTACGTGCCGTGC 59.752 43.478 10.01 0.00 41.39 5.34
3045 3253 1.006832 ATGATTTACGTGCCGTGCTC 58.993 50.000 10.01 5.26 41.39 4.26
3047 3255 0.645868 GATTTACGTGCCGTGCTCTC 59.354 55.000 10.01 0.08 41.39 3.20
3048 3256 0.739813 ATTTACGTGCCGTGCTCTCC 60.740 55.000 10.01 0.00 41.39 3.71
3049 3257 2.775032 TTTACGTGCCGTGCTCTCCC 62.775 60.000 10.01 0.00 41.39 4.30
3060 3268 4.803426 CTCTCCCCGAGCACACGC 62.803 72.222 0.00 0.00 38.99 5.34
3065 3273 4.680237 CCCGAGCACACGCCTGAA 62.680 66.667 0.00 0.00 39.83 3.02
3066 3274 3.114616 CCGAGCACACGCCTGAAG 61.115 66.667 0.00 0.00 39.83 3.02
3067 3275 3.114616 CGAGCACACGCCTGAAGG 61.115 66.667 0.00 0.00 39.83 3.46
3077 3285 4.633769 CCTGAAGGCCTTGCTCTC 57.366 61.111 26.25 8.86 0.00 3.20
3078 3286 1.077858 CCTGAAGGCCTTGCTCTCC 60.078 63.158 26.25 7.81 0.00 3.71
3080 3288 0.676151 CTGAAGGCCTTGCTCTCCAC 60.676 60.000 26.25 6.13 0.00 4.02
3081 3289 1.376466 GAAGGCCTTGCTCTCCACA 59.624 57.895 26.25 0.00 0.00 4.17
3082 3290 0.676151 GAAGGCCTTGCTCTCCACAG 60.676 60.000 26.25 0.00 0.00 3.66
3084 3292 2.350514 GCCTTGCTCTCCACAGCT 59.649 61.111 0.00 0.00 40.39 4.24
3085 3293 1.303155 GCCTTGCTCTCCACAGCTT 60.303 57.895 0.00 0.00 40.39 3.74
3086 3294 0.892814 GCCTTGCTCTCCACAGCTTT 60.893 55.000 0.00 0.00 40.39 3.51
3087 3295 1.613836 CCTTGCTCTCCACAGCTTTT 58.386 50.000 0.00 0.00 40.39 2.27
3090 3298 2.346766 TGCTCTCCACAGCTTTTTCA 57.653 45.000 0.00 0.00 40.39 2.69
3093 3301 2.575532 CTCTCCACAGCTTTTTCACCA 58.424 47.619 0.00 0.00 0.00 4.17
3094 3302 3.152341 CTCTCCACAGCTTTTTCACCAT 58.848 45.455 0.00 0.00 0.00 3.55
3095 3303 3.149196 TCTCCACAGCTTTTTCACCATC 58.851 45.455 0.00 0.00 0.00 3.51
3096 3304 2.229784 CTCCACAGCTTTTTCACCATCC 59.770 50.000 0.00 0.00 0.00 3.51
3097 3305 1.962807 CCACAGCTTTTTCACCATCCA 59.037 47.619 0.00 0.00 0.00 3.41
3098 3306 2.288395 CCACAGCTTTTTCACCATCCAC 60.288 50.000 0.00 0.00 0.00 4.02
3099 3307 1.963515 ACAGCTTTTTCACCATCCACC 59.036 47.619 0.00 0.00 0.00 4.61
3100 3308 2.242043 CAGCTTTTTCACCATCCACCT 58.758 47.619 0.00 0.00 0.00 4.00
3101 3309 2.029649 CAGCTTTTTCACCATCCACCTG 60.030 50.000 0.00 0.00 0.00 4.00
3108 3316 4.326255 CCATCCACCTGGTTCAGC 57.674 61.111 0.00 0.00 36.34 4.26
3109 3317 1.746615 CCATCCACCTGGTTCAGCG 60.747 63.158 0.00 0.00 36.34 5.18
3110 3318 1.296392 CATCCACCTGGTTCAGCGA 59.704 57.895 0.00 0.00 36.34 4.93
3111 3319 0.321564 CATCCACCTGGTTCAGCGAA 60.322 55.000 0.00 0.00 36.34 4.70
3112 3320 0.036010 ATCCACCTGGTTCAGCGAAG 60.036 55.000 0.00 0.00 36.34 3.79
3113 3321 1.071471 CCACCTGGTTCAGCGAAGT 59.929 57.895 0.00 0.00 0.00 3.01
3114 3322 0.535102 CCACCTGGTTCAGCGAAGTT 60.535 55.000 0.00 0.00 0.00 2.66
3115 3323 1.308998 CACCTGGTTCAGCGAAGTTT 58.691 50.000 0.00 0.00 0.00 2.66
3118 3326 0.875059 CTGGTTCAGCGAAGTTTCCC 59.125 55.000 0.00 0.00 0.00 3.97
3119 3327 0.181587 TGGTTCAGCGAAGTTTCCCA 59.818 50.000 0.00 0.00 0.00 4.37
3120 3328 0.875059 GGTTCAGCGAAGTTTCCCAG 59.125 55.000 0.00 0.00 0.00 4.45
3121 3329 0.238553 GTTCAGCGAAGTTTCCCAGC 59.761 55.000 0.00 0.00 0.00 4.85
3122 3330 1.227999 TTCAGCGAAGTTTCCCAGCG 61.228 55.000 0.00 0.00 0.00 5.18
3123 3331 1.667830 CAGCGAAGTTTCCCAGCGA 60.668 57.895 0.00 0.00 0.00 4.93
3124 3332 1.070786 AGCGAAGTTTCCCAGCGAA 59.929 52.632 0.00 0.00 0.00 4.70
3125 3333 0.534203 AGCGAAGTTTCCCAGCGAAA 60.534 50.000 0.00 0.00 38.16 3.46
3126 3334 0.521735 GCGAAGTTTCCCAGCGAAAT 59.478 50.000 0.00 0.00 42.38 2.17
3127 3335 1.729149 GCGAAGTTTCCCAGCGAAATG 60.729 52.381 0.00 0.00 42.38 2.32
3128 3336 1.729149 CGAAGTTTCCCAGCGAAATGC 60.729 52.381 0.00 0.00 42.38 3.56
3152 3388 1.833630 GACTCCCACACTCCATCATCA 59.166 52.381 0.00 0.00 0.00 3.07
3153 3389 2.237143 GACTCCCACACTCCATCATCAA 59.763 50.000 0.00 0.00 0.00 2.57
3154 3390 2.848694 ACTCCCACACTCCATCATCAAT 59.151 45.455 0.00 0.00 0.00 2.57
3155 3391 3.118112 ACTCCCACACTCCATCATCAATC 60.118 47.826 0.00 0.00 0.00 2.67
3161 3397 5.451381 CCACACTCCATCATCAATCCATTTG 60.451 44.000 0.00 0.00 36.61 2.32
3163 3399 5.718130 ACACTCCATCATCAATCCATTTGTT 59.282 36.000 0.00 0.00 36.65 2.83
3164 3400 6.127535 ACACTCCATCATCAATCCATTTGTTC 60.128 38.462 0.00 0.00 36.65 3.18
3165 3401 5.953548 ACTCCATCATCAATCCATTTGTTCA 59.046 36.000 0.00 0.00 36.65 3.18
3170 3406 9.037737 CCATCATCAATCCATTTGTTCAAATAC 57.962 33.333 9.91 0.00 36.65 1.89
3171 3407 9.037737 CATCATCAATCCATTTGTTCAAATACC 57.962 33.333 9.91 0.00 36.65 2.73
3179 3415 3.584406 TTGTTCAAATACCCCGCATTG 57.416 42.857 0.00 0.00 0.00 2.82
3205 3441 6.198687 CGAACGTACCAACCTACGAATAATA 58.801 40.000 5.79 0.00 41.75 0.98
3207 3443 7.305418 CGAACGTACCAACCTACGAATAATAAC 60.305 40.741 5.79 0.00 41.75 1.89
3208 3444 7.100458 ACGTACCAACCTACGAATAATAACT 57.900 36.000 5.79 0.00 41.75 2.24
3223 3459 9.379791 CGAATAATAACTACCTTATCCAATCCC 57.620 37.037 0.00 0.00 0.00 3.85
3229 3465 6.189036 ACTACCTTATCCAATCCCTTTAGC 57.811 41.667 0.00 0.00 0.00 3.09
3230 3466 5.911766 ACTACCTTATCCAATCCCTTTAGCT 59.088 40.000 0.00 0.00 0.00 3.32
3232 3468 4.726825 ACCTTATCCAATCCCTTTAGCTGA 59.273 41.667 0.00 0.00 0.00 4.26
3233 3469 5.066593 CCTTATCCAATCCCTTTAGCTGAC 58.933 45.833 0.00 0.00 0.00 3.51
3234 3470 2.691409 TCCAATCCCTTTAGCTGACG 57.309 50.000 0.00 0.00 0.00 4.35
3235 3471 1.017387 CCAATCCCTTTAGCTGACGC 58.983 55.000 0.00 0.00 0.00 5.19
3236 3472 1.678728 CCAATCCCTTTAGCTGACGCA 60.679 52.381 0.00 0.00 39.10 5.24
3238 3474 2.246719 ATCCCTTTAGCTGACGCATC 57.753 50.000 0.00 0.00 39.10 3.91
3239 3475 0.901827 TCCCTTTAGCTGACGCATCA 59.098 50.000 0.00 0.00 39.10 3.07
3246 3482 3.772636 CTGACGCATCAGTCGGTG 58.227 61.111 0.54 0.00 46.39 4.94
3247 3483 2.432456 TGACGCATCAGTCGGTGC 60.432 61.111 0.00 0.00 43.70 5.01
3248 3484 3.188786 GACGCATCAGTCGGTGCC 61.189 66.667 0.00 0.00 38.08 5.01
3249 3485 3.649277 GACGCATCAGTCGGTGCCT 62.649 63.158 0.00 0.00 38.08 4.75
3250 3486 2.887568 CGCATCAGTCGGTGCCTC 60.888 66.667 0.00 0.00 38.08 4.70
3251 3487 2.265739 GCATCAGTCGGTGCCTCA 59.734 61.111 0.00 0.00 35.35 3.86
3252 3488 1.153289 GCATCAGTCGGTGCCTCAT 60.153 57.895 0.00 0.00 35.35 2.90
3253 3489 0.745845 GCATCAGTCGGTGCCTCATT 60.746 55.000 0.00 0.00 35.35 2.57
3254 3490 1.742761 CATCAGTCGGTGCCTCATTT 58.257 50.000 0.00 0.00 0.00 2.32
3255 3491 2.086869 CATCAGTCGGTGCCTCATTTT 58.913 47.619 0.00 0.00 0.00 1.82
3256 3492 1.808411 TCAGTCGGTGCCTCATTTTC 58.192 50.000 0.00 0.00 0.00 2.29
3257 3493 1.347707 TCAGTCGGTGCCTCATTTTCT 59.652 47.619 0.00 0.00 0.00 2.52
3258 3494 1.734465 CAGTCGGTGCCTCATTTTCTC 59.266 52.381 0.00 0.00 0.00 2.87
3259 3495 1.347707 AGTCGGTGCCTCATTTTCTCA 59.652 47.619 0.00 0.00 0.00 3.27
3260 3496 1.464997 GTCGGTGCCTCATTTTCTCAC 59.535 52.381 0.00 0.00 0.00 3.51
3261 3497 1.347707 TCGGTGCCTCATTTTCTCACT 59.652 47.619 0.00 0.00 0.00 3.41
3262 3498 1.466167 CGGTGCCTCATTTTCTCACTG 59.534 52.381 0.00 0.00 0.00 3.66
3263 3499 1.200948 GGTGCCTCATTTTCTCACTGC 59.799 52.381 0.00 0.00 0.00 4.40
3264 3500 2.157738 GTGCCTCATTTTCTCACTGCT 58.842 47.619 0.00 0.00 0.00 4.24
3265 3501 2.095364 GTGCCTCATTTTCTCACTGCTG 60.095 50.000 0.00 0.00 0.00 4.41
3266 3502 1.471684 GCCTCATTTTCTCACTGCTGG 59.528 52.381 0.00 0.00 0.00 4.85
3267 3503 2.787994 CCTCATTTTCTCACTGCTGGT 58.212 47.619 0.00 0.00 0.00 4.00
3268 3504 2.746362 CCTCATTTTCTCACTGCTGGTC 59.254 50.000 0.00 0.00 0.00 4.02
3269 3505 2.414481 CTCATTTTCTCACTGCTGGTCG 59.586 50.000 0.00 0.00 0.00 4.79
3270 3506 2.146342 CATTTTCTCACTGCTGGTCGT 58.854 47.619 0.00 0.00 0.00 4.34
3271 3507 2.325583 TTTTCTCACTGCTGGTCGTT 57.674 45.000 0.00 0.00 0.00 3.85
3272 3508 2.325583 TTTCTCACTGCTGGTCGTTT 57.674 45.000 0.00 0.00 0.00 3.60
3273 3509 1.865865 TTCTCACTGCTGGTCGTTTC 58.134 50.000 0.00 0.00 0.00 2.78
3274 3510 0.318699 TCTCACTGCTGGTCGTTTCG 60.319 55.000 0.00 0.00 0.00 3.46
3275 3511 0.597637 CTCACTGCTGGTCGTTTCGT 60.598 55.000 0.00 0.00 0.00 3.85
3276 3512 0.179094 TCACTGCTGGTCGTTTCGTT 60.179 50.000 0.00 0.00 0.00 3.85
3277 3513 0.232303 CACTGCTGGTCGTTTCGTTC 59.768 55.000 0.00 0.00 0.00 3.95
3278 3514 0.104304 ACTGCTGGTCGTTTCGTTCT 59.896 50.000 0.00 0.00 0.00 3.01
3279 3515 0.784778 CTGCTGGTCGTTTCGTTCTC 59.215 55.000 0.00 0.00 0.00 2.87
3280 3516 0.103390 TGCTGGTCGTTTCGTTCTCA 59.897 50.000 0.00 0.00 0.00 3.27
3281 3517 0.507358 GCTGGTCGTTTCGTTCTCAC 59.493 55.000 0.00 0.00 0.00 3.51
3282 3518 1.868519 GCTGGTCGTTTCGTTCTCACT 60.869 52.381 0.00 0.00 0.00 3.41
3283 3519 2.470821 CTGGTCGTTTCGTTCTCACTT 58.529 47.619 0.00 0.00 0.00 3.16
3284 3520 2.198406 TGGTCGTTTCGTTCTCACTTG 58.802 47.619 0.00 0.00 0.00 3.16
3285 3521 2.159212 TGGTCGTTTCGTTCTCACTTGA 60.159 45.455 0.00 0.00 0.00 3.02
3286 3522 2.861935 GGTCGTTTCGTTCTCACTTGAA 59.138 45.455 0.00 0.00 0.00 2.69
3287 3523 3.493503 GGTCGTTTCGTTCTCACTTGAAT 59.506 43.478 0.00 0.00 0.00 2.57
3288 3524 4.025145 GGTCGTTTCGTTCTCACTTGAATT 60.025 41.667 0.00 0.00 0.00 2.17
3289 3525 4.898488 GTCGTTTCGTTCTCACTTGAATTG 59.102 41.667 0.00 0.00 0.00 2.32
3290 3526 4.806775 TCGTTTCGTTCTCACTTGAATTGA 59.193 37.500 0.00 0.00 0.00 2.57
3291 3527 5.292345 TCGTTTCGTTCTCACTTGAATTGAA 59.708 36.000 0.00 0.00 0.00 2.69
3292 3528 5.963004 CGTTTCGTTCTCACTTGAATTGAAA 59.037 36.000 0.00 0.00 34.23 2.69
3293 3529 6.467682 CGTTTCGTTCTCACTTGAATTGAAAA 59.532 34.615 0.00 0.00 36.22 2.29
3294 3530 7.511506 CGTTTCGTTCTCACTTGAATTGAAAAC 60.512 37.037 0.00 0.00 36.22 2.43
3295 3531 5.816919 TCGTTCTCACTTGAATTGAAAACC 58.183 37.500 0.00 0.00 0.00 3.27
3296 3532 4.670621 CGTTCTCACTTGAATTGAAAACCG 59.329 41.667 0.00 0.00 0.00 4.44
3297 3533 5.578776 GTTCTCACTTGAATTGAAAACCGT 58.421 37.500 0.00 0.00 0.00 4.83
3298 3534 5.828299 TCTCACTTGAATTGAAAACCGTT 57.172 34.783 0.00 0.00 0.00 4.44
3299 3535 5.577835 TCTCACTTGAATTGAAAACCGTTG 58.422 37.500 0.00 0.00 0.00 4.10
3300 3536 4.109050 TCACTTGAATTGAAAACCGTTGC 58.891 39.130 0.00 0.00 0.00 4.17
3301 3537 3.061271 CACTTGAATTGAAAACCGTTGCG 60.061 43.478 0.00 0.00 0.00 4.85
3302 3538 1.482278 TGAATTGAAAACCGTTGCGC 58.518 45.000 0.00 0.00 0.00 6.09
3303 3539 1.202302 TGAATTGAAAACCGTTGCGCA 60.202 42.857 5.66 5.66 0.00 6.09
3304 3540 1.855360 GAATTGAAAACCGTTGCGCAA 59.145 42.857 21.02 21.02 0.00 4.85
3305 3541 2.147436 ATTGAAAACCGTTGCGCAAT 57.853 40.000 27.79 9.03 0.00 3.56
3306 3542 1.203928 TTGAAAACCGTTGCGCAATG 58.796 45.000 30.95 30.95 0.00 2.82
3312 3548 2.784596 CGTTGCGCAATGGATCGT 59.215 55.556 30.41 0.00 0.00 3.73
3313 3549 2.002899 CGTTGCGCAATGGATCGTA 58.997 52.632 30.41 0.98 0.00 3.43
3314 3550 0.581529 CGTTGCGCAATGGATCGTAT 59.418 50.000 30.41 0.00 0.00 3.06
3315 3551 1.397190 CGTTGCGCAATGGATCGTATC 60.397 52.381 30.41 11.63 0.00 2.24
3325 3561 1.705873 GGATCGTATCCTCCCACACT 58.294 55.000 6.63 0.00 46.19 3.55
3326 3562 2.040178 GGATCGTATCCTCCCACACTT 58.960 52.381 6.63 0.00 46.19 3.16
3327 3563 2.434702 GGATCGTATCCTCCCACACTTT 59.565 50.000 6.63 0.00 46.19 2.66
3328 3564 3.118371 GGATCGTATCCTCCCACACTTTT 60.118 47.826 6.63 0.00 46.19 2.27
3329 3565 3.604875 TCGTATCCTCCCACACTTTTC 57.395 47.619 0.00 0.00 0.00 2.29
3330 3566 2.235402 TCGTATCCTCCCACACTTTTCC 59.765 50.000 0.00 0.00 0.00 3.13
3331 3567 2.679930 CGTATCCTCCCACACTTTTCCC 60.680 54.545 0.00 0.00 0.00 3.97
3332 3568 1.760405 ATCCTCCCACACTTTTCCCT 58.240 50.000 0.00 0.00 0.00 4.20
3333 3569 1.529744 TCCTCCCACACTTTTCCCTT 58.470 50.000 0.00 0.00 0.00 3.95
3334 3570 1.144913 TCCTCCCACACTTTTCCCTTG 59.855 52.381 0.00 0.00 0.00 3.61
3335 3571 1.620822 CTCCCACACTTTTCCCTTGG 58.379 55.000 0.00 0.00 0.00 3.61
3336 3572 1.144913 CTCCCACACTTTTCCCTTGGA 59.855 52.381 0.00 0.00 0.00 3.53
3337 3573 1.786441 TCCCACACTTTTCCCTTGGAT 59.214 47.619 0.00 0.00 0.00 3.41
3338 3574 2.178984 TCCCACACTTTTCCCTTGGATT 59.821 45.455 0.00 0.00 0.00 3.01
3339 3575 2.299867 CCCACACTTTTCCCTTGGATTG 59.700 50.000 0.00 0.00 0.00 2.67
3340 3576 2.299867 CCACACTTTTCCCTTGGATTGG 59.700 50.000 0.00 0.00 0.00 3.16
3341 3577 3.230134 CACACTTTTCCCTTGGATTGGA 58.770 45.455 0.00 0.00 0.00 3.53
3342 3578 3.834231 CACACTTTTCCCTTGGATTGGAT 59.166 43.478 0.00 0.00 0.00 3.41
3343 3579 5.016173 CACACTTTTCCCTTGGATTGGATA 58.984 41.667 0.00 0.00 0.00 2.59
3344 3580 5.480073 CACACTTTTCCCTTGGATTGGATAA 59.520 40.000 0.00 0.00 0.00 1.75
3345 3581 5.480422 ACACTTTTCCCTTGGATTGGATAAC 59.520 40.000 0.00 0.00 0.00 1.89
3346 3582 5.480073 CACTTTTCCCTTGGATTGGATAACA 59.520 40.000 0.00 0.00 0.00 2.41
3347 3583 5.716703 ACTTTTCCCTTGGATTGGATAACAG 59.283 40.000 0.00 0.00 0.00 3.16
3348 3584 3.297134 TCCCTTGGATTGGATAACAGC 57.703 47.619 0.00 0.00 0.00 4.40
3349 3585 2.852449 TCCCTTGGATTGGATAACAGCT 59.148 45.455 0.00 0.00 0.00 4.24
3350 3586 3.269381 TCCCTTGGATTGGATAACAGCTT 59.731 43.478 0.00 0.00 0.00 3.74
3351 3587 3.633986 CCCTTGGATTGGATAACAGCTTC 59.366 47.826 0.00 0.00 0.00 3.86
3352 3588 3.633986 CCTTGGATTGGATAACAGCTTCC 59.366 47.826 0.00 0.00 0.00 3.46
3353 3589 2.917933 TGGATTGGATAACAGCTTCCG 58.082 47.619 0.00 0.00 34.58 4.30
3354 3590 2.238646 TGGATTGGATAACAGCTTCCGT 59.761 45.455 0.00 0.00 34.58 4.69
3355 3591 3.279434 GGATTGGATAACAGCTTCCGTT 58.721 45.455 0.00 0.00 34.58 4.44
3356 3592 3.694566 GGATTGGATAACAGCTTCCGTTT 59.305 43.478 0.00 0.00 34.58 3.60
3357 3593 4.201920 GGATTGGATAACAGCTTCCGTTTC 60.202 45.833 0.00 0.00 34.58 2.78
3358 3594 3.410631 TGGATAACAGCTTCCGTTTCA 57.589 42.857 0.00 0.00 34.58 2.69
3359 3595 3.334691 TGGATAACAGCTTCCGTTTCAG 58.665 45.455 0.00 0.00 34.58 3.02
3360 3596 3.244422 TGGATAACAGCTTCCGTTTCAGT 60.244 43.478 0.00 0.00 34.58 3.41
3361 3597 4.020928 TGGATAACAGCTTCCGTTTCAGTA 60.021 41.667 0.00 0.00 34.58 2.74
3362 3598 4.329256 GGATAACAGCTTCCGTTTCAGTAC 59.671 45.833 0.00 0.00 0.00 2.73
3363 3599 2.165319 ACAGCTTCCGTTTCAGTACC 57.835 50.000 0.00 0.00 0.00 3.34
3364 3600 1.414919 ACAGCTTCCGTTTCAGTACCA 59.585 47.619 0.00 0.00 0.00 3.25
3406 3642 1.933247 CTCTTCGTGATGGGCTCTTC 58.067 55.000 0.00 0.00 0.00 2.87
3408 3644 1.478510 TCTTCGTGATGGGCTCTTCTC 59.521 52.381 0.66 0.00 0.00 2.87
3409 3645 1.480137 CTTCGTGATGGGCTCTTCTCT 59.520 52.381 0.66 0.00 0.00 3.10
3410 3646 0.820226 TCGTGATGGGCTCTTCTCTG 59.180 55.000 0.66 0.00 0.00 3.35
3414 3653 2.703007 GTGATGGGCTCTTCTCTGGTAT 59.297 50.000 0.66 0.00 0.00 2.73
3423 3662 5.988561 GGCTCTTCTCTGGTATTACATGAAG 59.011 44.000 0.00 0.00 34.77 3.02
3424 3663 5.988561 GCTCTTCTCTGGTATTACATGAAGG 59.011 44.000 0.00 0.00 34.50 3.46
3436 3675 7.502226 GGTATTACATGAAGGATGGATCAAACA 59.498 37.037 0.00 0.00 36.23 2.83
3437 3676 7.959658 ATTACATGAAGGATGGATCAAACAA 57.040 32.000 0.00 0.00 36.23 2.83
3438 3677 7.773489 TTACATGAAGGATGGATCAAACAAA 57.227 32.000 0.00 0.00 36.23 2.83
3439 3678 6.029346 ACATGAAGGATGGATCAAACAAAC 57.971 37.500 0.00 0.00 36.23 2.93
3440 3679 4.764679 TGAAGGATGGATCAAACAAACG 57.235 40.909 0.00 0.00 0.00 3.60
3441 3680 4.393834 TGAAGGATGGATCAAACAAACGA 58.606 39.130 0.00 0.00 0.00 3.85
3442 3681 5.009631 TGAAGGATGGATCAAACAAACGAT 58.990 37.500 0.00 0.00 0.00 3.73
3443 3682 5.476599 TGAAGGATGGATCAAACAAACGATT 59.523 36.000 0.00 0.00 0.00 3.34
3444 3683 5.567138 AGGATGGATCAAACAAACGATTC 57.433 39.130 0.00 0.00 0.00 2.52
3445 3684 4.399303 AGGATGGATCAAACAAACGATTCC 59.601 41.667 0.00 0.00 0.00 3.01
3446 3685 4.440112 GGATGGATCAAACAAACGATTCCC 60.440 45.833 0.00 0.00 0.00 3.97
3447 3686 2.486203 TGGATCAAACAAACGATTCCCG 59.514 45.455 0.00 0.00 45.44 5.14
3448 3687 2.745281 GGATCAAACAAACGATTCCCGA 59.255 45.455 0.00 0.00 41.76 5.14
3449 3688 3.377172 GGATCAAACAAACGATTCCCGAT 59.623 43.478 0.00 0.00 41.76 4.18
3451 3690 5.238650 GGATCAAACAAACGATTCCCGATAT 59.761 40.000 0.00 0.00 41.76 1.63
3452 3691 5.728351 TCAAACAAACGATTCCCGATATC 57.272 39.130 0.00 0.00 41.76 1.63
3454 3693 2.750948 ACAAACGATTCCCGATATCCG 58.249 47.619 0.00 0.00 41.76 4.18
3487 3726 2.592993 CCCTCCCCGTGCAAGAGAA 61.593 63.158 0.00 0.00 0.00 2.87
3490 3729 2.742372 CCCCGTGCAAGAGAACCG 60.742 66.667 0.00 0.00 0.00 4.44
3492 3731 2.027625 CCCGTGCAAGAGAACCGTC 61.028 63.158 0.00 0.00 0.00 4.79
3495 3734 0.597637 CGTGCAAGAGAACCGTCAGT 60.598 55.000 0.00 0.00 0.00 3.41
3499 3738 1.000163 GCAAGAGAACCGTCAGTCAGA 60.000 52.381 0.00 0.00 0.00 3.27
3509 3752 4.748892 ACCGTCAGTCAGATAAACAGATG 58.251 43.478 0.00 0.00 0.00 2.90
3510 3753 4.115516 CCGTCAGTCAGATAAACAGATGG 58.884 47.826 0.00 0.00 34.34 3.51
3512 3755 5.410924 CGTCAGTCAGATAAACAGATGGAA 58.589 41.667 0.00 0.00 0.00 3.53
3535 3778 4.719616 GACACGCGGCGTTTGCTC 62.720 66.667 27.24 13.67 38.32 4.26
3555 3798 2.506061 CCTGCTCATCTCTCCCCCG 61.506 68.421 0.00 0.00 0.00 5.73
3559 3808 1.330655 GCTCATCTCTCCCCCGTGAA 61.331 60.000 0.00 0.00 0.00 3.18
3573 3822 0.451792 CGTGAAAAAGCGCAGAGAGC 60.452 55.000 11.47 0.00 40.87 4.09
3596 3881 7.739825 AGCAGTATATTATCTCTCCAAAGCAA 58.260 34.615 0.00 0.00 0.00 3.91
3597 3882 8.213679 AGCAGTATATTATCTCTCCAAAGCAAA 58.786 33.333 0.00 0.00 0.00 3.68
3598 3883 9.007901 GCAGTATATTATCTCTCCAAAGCAAAT 57.992 33.333 0.00 0.00 0.00 2.32
3655 3940 1.835121 TCGTCCTTGTCGAATATGCG 58.165 50.000 0.00 0.00 34.36 4.73
3657 3942 1.286501 GTCCTTGTCGAATATGCGCA 58.713 50.000 14.96 14.96 0.00 6.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.973632 TCCGCTAGGTTGCAGAAGAA 59.026 50.000 0.00 0.00 39.05 2.52
1 2 0.973632 TTCCGCTAGGTTGCAGAAGA 59.026 50.000 0.00 0.00 39.05 2.87
2 3 1.066858 TCTTCCGCTAGGTTGCAGAAG 60.067 52.381 6.22 6.22 44.41 2.85
3 4 0.973632 TCTTCCGCTAGGTTGCAGAA 59.026 50.000 0.00 0.00 39.05 3.02
4 5 0.246635 GTCTTCCGCTAGGTTGCAGA 59.753 55.000 0.00 0.00 39.05 4.26
5 6 0.037326 TGTCTTCCGCTAGGTTGCAG 60.037 55.000 0.00 0.00 39.05 4.41
6 7 0.394938 TTGTCTTCCGCTAGGTTGCA 59.605 50.000 0.00 0.00 39.05 4.08
7 8 1.079503 CTTGTCTTCCGCTAGGTTGC 58.920 55.000 0.00 0.00 39.05 4.17
8 9 2.457366 ACTTGTCTTCCGCTAGGTTG 57.543 50.000 0.00 0.00 39.05 3.77
9 10 3.163467 ACTACTTGTCTTCCGCTAGGTT 58.837 45.455 0.00 0.00 39.05 3.50
10 11 2.805194 ACTACTTGTCTTCCGCTAGGT 58.195 47.619 0.00 0.00 39.05 3.08
11 12 3.242673 CGTACTACTTGTCTTCCGCTAGG 60.243 52.174 0.00 0.00 39.46 3.02
12 13 3.242673 CCGTACTACTTGTCTTCCGCTAG 60.243 52.174 0.00 0.00 0.00 3.42
13 14 2.679837 CCGTACTACTTGTCTTCCGCTA 59.320 50.000 0.00 0.00 0.00 4.26
14 15 1.471684 CCGTACTACTTGTCTTCCGCT 59.528 52.381 0.00 0.00 0.00 5.52
15 16 1.200948 ACCGTACTACTTGTCTTCCGC 59.799 52.381 0.00 0.00 0.00 5.54
16 17 2.159462 GGACCGTACTACTTGTCTTCCG 60.159 54.545 0.00 0.00 0.00 4.30
17 18 3.087781 AGGACCGTACTACTTGTCTTCC 58.912 50.000 0.00 0.00 0.00 3.46
18 19 3.505293 ACAGGACCGTACTACTTGTCTTC 59.495 47.826 0.00 0.00 0.00 2.87
19 20 3.494332 ACAGGACCGTACTACTTGTCTT 58.506 45.455 0.00 0.00 0.00 3.01
20 21 3.080319 GACAGGACCGTACTACTTGTCT 58.920 50.000 14.01 0.00 0.00 3.41
21 22 2.163211 GGACAGGACCGTACTACTTGTC 59.837 54.545 13.37 13.37 0.00 3.18
22 23 2.165998 GGACAGGACCGTACTACTTGT 58.834 52.381 0.00 0.00 0.00 3.16
23 24 1.475682 GGGACAGGACCGTACTACTTG 59.524 57.143 0.00 0.00 0.00 3.16
24 25 1.844687 GGGACAGGACCGTACTACTT 58.155 55.000 0.00 0.00 0.00 2.24
25 26 0.393537 CGGGACAGGACCGTACTACT 60.394 60.000 0.00 0.00 46.03 2.57
26 27 2.101700 CGGGACAGGACCGTACTAC 58.898 63.158 0.00 0.00 46.03 2.73
27 28 4.643795 CGGGACAGGACCGTACTA 57.356 61.111 0.00 0.00 46.03 1.82
33 34 1.386525 TACATACGCGGGACAGGACC 61.387 60.000 12.47 0.00 0.00 4.46
34 35 0.248784 GTACATACGCGGGACAGGAC 60.249 60.000 12.47 0.00 0.00 3.85
35 36 0.680601 TGTACATACGCGGGACAGGA 60.681 55.000 12.47 0.00 0.00 3.86
36 37 0.387929 ATGTACATACGCGGGACAGG 59.612 55.000 12.47 0.00 0.00 4.00
37 38 1.202371 ACATGTACATACGCGGGACAG 60.202 52.381 12.47 2.91 0.00 3.51
38 39 0.818938 ACATGTACATACGCGGGACA 59.181 50.000 12.47 6.15 0.00 4.02
39 40 2.388121 GTACATGTACATACGCGGGAC 58.612 52.381 27.37 0.00 36.15 4.46
40 41 1.002576 CGTACATGTACATACGCGGGA 60.003 52.381 30.17 0.00 37.91 5.14
41 42 1.401530 CGTACATGTACATACGCGGG 58.598 55.000 30.17 11.73 37.91 6.13
42 43 1.401530 CCGTACATGTACATACGCGG 58.598 55.000 30.17 21.93 42.20 6.46
43 44 0.774098 GCCGTACATGTACATACGCG 59.226 55.000 30.17 17.72 42.20 6.01
44 45 1.784856 CAGCCGTACATGTACATACGC 59.215 52.381 30.17 24.08 42.20 4.42
45 46 2.223641 ACCAGCCGTACATGTACATACG 60.224 50.000 30.17 21.06 42.97 3.06
46 47 3.447918 ACCAGCCGTACATGTACATAC 57.552 47.619 30.17 20.01 35.87 2.39
47 48 4.081586 TCAAACCAGCCGTACATGTACATA 60.082 41.667 30.17 0.00 35.87 2.29
48 49 3.006940 CAAACCAGCCGTACATGTACAT 58.993 45.455 30.17 15.92 35.87 2.29
49 50 2.037381 TCAAACCAGCCGTACATGTACA 59.963 45.455 30.17 8.69 35.87 2.90
50 51 2.690786 TCAAACCAGCCGTACATGTAC 58.309 47.619 23.53 23.53 0.00 2.90
51 52 3.620427 ATCAAACCAGCCGTACATGTA 57.380 42.857 0.08 0.08 0.00 2.29
52 53 2.489938 ATCAAACCAGCCGTACATGT 57.510 45.000 2.69 2.69 0.00 3.21
53 54 3.440173 AGAAATCAAACCAGCCGTACATG 59.560 43.478 0.00 0.00 0.00 3.21
54 55 3.440173 CAGAAATCAAACCAGCCGTACAT 59.560 43.478 0.00 0.00 0.00 2.29
55 56 2.811431 CAGAAATCAAACCAGCCGTACA 59.189 45.455 0.00 0.00 0.00 2.90
56 57 3.071479 TCAGAAATCAAACCAGCCGTAC 58.929 45.455 0.00 0.00 0.00 3.67
57 58 3.244422 ACTCAGAAATCAAACCAGCCGTA 60.244 43.478 0.00 0.00 0.00 4.02
58 59 2.154462 CTCAGAAATCAAACCAGCCGT 58.846 47.619 0.00 0.00 0.00 5.68
59 60 2.154462 ACTCAGAAATCAAACCAGCCG 58.846 47.619 0.00 0.00 0.00 5.52
60 61 4.072131 TGTACTCAGAAATCAAACCAGCC 58.928 43.478 0.00 0.00 0.00 4.85
61 62 4.997395 TCTGTACTCAGAAATCAAACCAGC 59.003 41.667 0.00 0.00 46.17 4.85
79 80 5.010933 AGCAAGCAAGTAGTACTCTCTGTA 58.989 41.667 2.58 0.00 0.00 2.74
85 86 5.956642 ACTAAGAGCAAGCAAGTAGTACTC 58.043 41.667 2.58 0.00 0.00 2.59
94 95 5.228945 AGGTTAGAACTAAGAGCAAGCAA 57.771 39.130 0.00 0.00 0.00 3.91
181 184 9.593134 CTGAGCAGACTAATGAAAATAACTAGT 57.407 33.333 0.00 0.00 0.00 2.57
222 225 6.021153 GCATGATGAAAACGAAAGCAGATTAC 60.021 38.462 0.00 0.00 0.00 1.89
253 258 3.343617 TGGTCCATGGAATTTTCGAGTC 58.656 45.455 18.20 0.00 0.00 3.36
266 271 2.301346 GCCAGGTAGATTTGGTCCATG 58.699 52.381 0.00 0.00 36.81 3.66
271 276 1.705186 ACACTGCCAGGTAGATTTGGT 59.295 47.619 12.26 0.00 36.81 3.67
286 291 9.249457 ACGATCATGTAGATAATTAACACACTG 57.751 33.333 0.00 0.00 37.00 3.66
358 363 7.137490 TGAGAGATTCTTTACATGCTGTTTG 57.863 36.000 0.00 0.00 0.00 2.93
394 399 6.057533 TGTGGAGCATAAATGTCCTGAATAG 58.942 40.000 10.75 0.00 32.66 1.73
451 460 2.355108 GGGCTGTGTGCTATGAGAAAGA 60.355 50.000 0.00 0.00 42.39 2.52
492 504 1.472082 TGTGTTTGGTTCAGCTGTGTG 59.528 47.619 14.67 0.00 0.00 3.82
493 505 1.745087 CTGTGTTTGGTTCAGCTGTGT 59.255 47.619 14.67 0.00 0.00 3.72
551 566 4.787551 ACAACATAACAGGACTTCAACCA 58.212 39.130 0.00 0.00 0.00 3.67
563 578 3.167485 ACGGAGGGAGTACAACATAACA 58.833 45.455 0.00 0.00 0.00 2.41
575 590 2.389715 AGTATTTCTGGACGGAGGGAG 58.610 52.381 0.00 0.00 0.00 4.30
576 591 2.500098 CAAGTATTTCTGGACGGAGGGA 59.500 50.000 0.00 0.00 0.00 4.20
577 592 2.236395 ACAAGTATTTCTGGACGGAGGG 59.764 50.000 0.00 0.00 0.00 4.30
578 593 3.056107 TGACAAGTATTTCTGGACGGAGG 60.056 47.826 0.00 0.00 0.00 4.30
579 594 4.188247 TGACAAGTATTTCTGGACGGAG 57.812 45.455 0.00 0.00 0.00 4.63
580 595 4.221924 TGATGACAAGTATTTCTGGACGGA 59.778 41.667 0.00 0.00 0.00 4.69
581 596 4.503910 TGATGACAAGTATTTCTGGACGG 58.496 43.478 0.00 0.00 0.00 4.79
582 597 6.480524 TTTGATGACAAGTATTTCTGGACG 57.519 37.500 0.00 0.00 37.32 4.79
583 598 8.514594 TCATTTTGATGACAAGTATTTCTGGAC 58.485 33.333 0.00 0.00 37.32 4.02
584 599 8.634335 TCATTTTGATGACAAGTATTTCTGGA 57.366 30.769 0.00 0.00 37.32 3.86
585 600 9.865321 ATTCATTTTGATGACAAGTATTTCTGG 57.135 29.630 0.00 0.00 37.32 3.86
591 606 9.865321 CCTTTGATTCATTTTGATGACAAGTAT 57.135 29.630 0.00 0.00 37.32 2.12
592 607 8.306038 CCCTTTGATTCATTTTGATGACAAGTA 58.694 33.333 0.00 0.00 37.32 2.24
593 608 7.156673 CCCTTTGATTCATTTTGATGACAAGT 58.843 34.615 0.00 0.00 37.32 3.16
594 609 6.592607 CCCCTTTGATTCATTTTGATGACAAG 59.407 38.462 0.00 0.00 37.32 3.16
595 610 6.269538 TCCCCTTTGATTCATTTTGATGACAA 59.730 34.615 0.00 0.00 0.00 3.18
596 611 5.779260 TCCCCTTTGATTCATTTTGATGACA 59.221 36.000 0.00 0.00 0.00 3.58
597 612 6.284891 TCCCCTTTGATTCATTTTGATGAC 57.715 37.500 0.00 0.00 0.00 3.06
598 613 6.441284 ACATCCCCTTTGATTCATTTTGATGA 59.559 34.615 14.99 0.00 32.39 2.92
599 614 6.646267 ACATCCCCTTTGATTCATTTTGATG 58.354 36.000 0.00 0.00 33.80 3.07
600 615 6.879367 ACATCCCCTTTGATTCATTTTGAT 57.121 33.333 0.00 0.00 0.00 2.57
601 616 7.840716 AGATACATCCCCTTTGATTCATTTTGA 59.159 33.333 0.00 0.00 0.00 2.69
602 617 8.015185 AGATACATCCCCTTTGATTCATTTTG 57.985 34.615 0.00 0.00 0.00 2.44
603 618 9.359653 CTAGATACATCCCCTTTGATTCATTTT 57.640 33.333 0.00 0.00 0.00 1.82
604 619 8.727149 TCTAGATACATCCCCTTTGATTCATTT 58.273 33.333 0.00 0.00 0.00 2.32
605 620 8.280258 TCTAGATACATCCCCTTTGATTCATT 57.720 34.615 0.00 0.00 0.00 2.57
606 621 7.878621 TCTAGATACATCCCCTTTGATTCAT 57.121 36.000 0.00 0.00 0.00 2.57
607 622 7.293299 ACATCTAGATACATCCCCTTTGATTCA 59.707 37.037 4.54 0.00 0.00 2.57
608 623 7.684529 ACATCTAGATACATCCCCTTTGATTC 58.315 38.462 4.54 0.00 0.00 2.52
609 624 7.639062 ACATCTAGATACATCCCCTTTGATT 57.361 36.000 4.54 0.00 0.00 2.57
610 625 8.923838 ATACATCTAGATACATCCCCTTTGAT 57.076 34.615 4.54 0.00 0.00 2.57
638 653 9.756571 GGATAAAGAGGGATGTATCTAGAACTA 57.243 37.037 0.00 0.00 0.00 2.24
639 654 8.235230 TGGATAAAGAGGGATGTATCTAGAACT 58.765 37.037 0.00 0.00 0.00 3.01
640 655 8.423906 TGGATAAAGAGGGATGTATCTAGAAC 57.576 38.462 0.00 0.00 0.00 3.01
641 656 9.621239 AATGGATAAAGAGGGATGTATCTAGAA 57.379 33.333 0.00 0.00 0.00 2.10
642 657 9.621239 AAATGGATAAAGAGGGATGTATCTAGA 57.379 33.333 0.00 0.00 0.00 2.43
645 660 8.727149 TCAAAATGGATAAAGAGGGATGTATCT 58.273 33.333 0.00 0.00 0.00 1.98
646 661 8.924511 TCAAAATGGATAAAGAGGGATGTATC 57.075 34.615 0.00 0.00 0.00 2.24
647 662 9.305555 CATCAAAATGGATAAAGAGGGATGTAT 57.694 33.333 0.00 0.00 0.00 2.29
648 663 8.501904 TCATCAAAATGGATAAAGAGGGATGTA 58.498 33.333 0.00 0.00 33.42 2.29
649 664 7.286316 GTCATCAAAATGGATAAAGAGGGATGT 59.714 37.037 0.00 0.00 33.42 3.06
650 665 7.286087 TGTCATCAAAATGGATAAAGAGGGATG 59.714 37.037 0.00 0.00 33.42 3.51
651 666 7.356680 TGTCATCAAAATGGATAAAGAGGGAT 58.643 34.615 0.00 0.00 33.42 3.85
652 667 6.730447 TGTCATCAAAATGGATAAAGAGGGA 58.270 36.000 0.00 0.00 33.42 4.20
653 668 7.123247 ACTTGTCATCAAAATGGATAAAGAGGG 59.877 37.037 0.00 0.00 33.42 4.30
654 669 8.059798 ACTTGTCATCAAAATGGATAAAGAGG 57.940 34.615 0.00 0.00 33.42 3.69
661 676 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
662 677 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
663 678 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
664 679 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
665 680 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
666 681 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
667 682 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
668 683 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
669 684 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
670 685 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
671 686 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
672 687 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
673 688 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
674 689 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
675 690 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
676 691 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
677 692 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
678 693 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
679 694 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
680 695 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
681 696 1.273327 GTTACTCCCTCCGTCCGAAAA 59.727 52.381 0.00 0.00 0.00 2.29
682 697 0.890683 GTTACTCCCTCCGTCCGAAA 59.109 55.000 0.00 0.00 0.00 3.46
683 698 0.038744 AGTTACTCCCTCCGTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
684 699 0.679002 CAGTTACTCCCTCCGTCCGA 60.679 60.000 0.00 0.00 0.00 4.55
685 700 1.807886 CAGTTACTCCCTCCGTCCG 59.192 63.158 0.00 0.00 0.00 4.79
686 701 1.516423 GCAGTTACTCCCTCCGTCC 59.484 63.158 0.00 0.00 0.00 4.79
687 702 1.255667 TGGCAGTTACTCCCTCCGTC 61.256 60.000 0.00 0.00 0.00 4.79
688 703 1.229082 TGGCAGTTACTCCCTCCGT 60.229 57.895 0.00 0.00 0.00 4.69
689 704 1.258445 ACTGGCAGTTACTCCCTCCG 61.258 60.000 15.88 0.00 0.00 4.63
690 705 0.984995 AACTGGCAGTTACTCCCTCC 59.015 55.000 30.31 0.00 36.52 4.30
691 706 1.348036 ACAACTGGCAGTTACTCCCTC 59.652 52.381 30.72 0.00 36.03 4.30
692 707 1.072331 CACAACTGGCAGTTACTCCCT 59.928 52.381 30.72 6.22 36.03 4.20
693 708 1.202770 ACACAACTGGCAGTTACTCCC 60.203 52.381 30.72 0.00 36.03 4.30
694 709 2.143925 GACACAACTGGCAGTTACTCC 58.856 52.381 30.72 17.00 36.03 3.85
695 710 2.833794 TGACACAACTGGCAGTTACTC 58.166 47.619 30.72 23.04 36.03 2.59
696 711 3.492102 ATGACACAACTGGCAGTTACT 57.508 42.857 30.72 16.91 39.48 2.24
697 712 3.563808 TCAATGACACAACTGGCAGTTAC 59.436 43.478 30.72 21.07 39.48 2.50
698 713 3.814625 TCAATGACACAACTGGCAGTTA 58.185 40.909 30.72 16.67 39.48 2.24
699 714 2.653726 TCAATGACACAACTGGCAGTT 58.346 42.857 26.54 26.54 39.48 3.16
922 943 3.784511 AGCATGATCCCAGATTACAGG 57.215 47.619 0.00 0.00 0.00 4.00
1250 1271 6.208402 TGTTTCTTTTGCATATAGCTGGACAA 59.792 34.615 0.00 0.00 45.94 3.18
1311 1332 4.754667 GGTTCCGCAGTCGTCCCC 62.755 72.222 0.00 0.00 0.00 4.81
1566 1587 3.004315 GTCTTCCGGCAACAAAATCTGAA 59.996 43.478 0.00 0.00 0.00 3.02
1659 1680 5.675575 GCCTAAAGCATTGTCAGAGATGTTG 60.676 44.000 0.00 0.00 42.97 3.33
1920 1941 4.445305 CCATCAGATCCTATCCTTGTTGCA 60.445 45.833 0.00 0.00 0.00 4.08
2022 2043 4.664267 AGAGCCACCCCTGCCTCA 62.664 66.667 0.00 0.00 0.00 3.86
2209 2230 1.798735 CTGTCAAGCATTCCGCCAG 59.201 57.895 0.00 0.00 44.04 4.85
2406 2427 1.891919 GTTCAGCAGCACGAACCCA 60.892 57.895 14.09 0.00 36.36 4.51
2409 2430 0.867746 TCATGTTCAGCAGCACGAAC 59.132 50.000 16.95 16.95 41.53 3.95
2445 2466 1.195115 CCTCGTCAATCCCTTCCTCA 58.805 55.000 0.00 0.00 0.00 3.86
2646 2676 0.395862 CTTAGTCCTCCTCCGCCTCA 60.396 60.000 0.00 0.00 0.00 3.86
2678 2708 1.398692 AGCTGAAACCGGAGCAAAAA 58.601 45.000 9.46 0.00 37.70 1.94
2693 2723 4.860907 GTCCAGCAAACATTTCATAAGCTG 59.139 41.667 0.00 0.00 45.44 4.24
2694 2724 4.082026 GGTCCAGCAAACATTTCATAAGCT 60.082 41.667 0.00 0.00 0.00 3.74
2696 2726 4.414852 CGGTCCAGCAAACATTTCATAAG 58.585 43.478 0.00 0.00 0.00 1.73
2699 2729 1.545582 CCGGTCCAGCAAACATTTCAT 59.454 47.619 0.00 0.00 0.00 2.57
2743 2945 2.665185 GGCCACAGCGACGAGTTT 60.665 61.111 0.00 0.00 41.24 2.66
2771 2974 1.959226 GCTCGGCTCGGTTCAAACA 60.959 57.895 0.00 0.00 0.00 2.83
2772 2975 1.901650 CTGCTCGGCTCGGTTCAAAC 61.902 60.000 0.00 0.00 0.00 2.93
2875 3079 0.178973 TCGACCAGAGAACCAGGACA 60.179 55.000 0.00 0.00 0.00 4.02
2900 3104 2.496070 GTTTGATTTAAGGGTCCAGGCC 59.504 50.000 0.00 0.00 0.00 5.19
2901 3105 3.193479 CAGTTTGATTTAAGGGTCCAGGC 59.807 47.826 0.00 0.00 0.00 4.85
2902 3106 4.218417 CACAGTTTGATTTAAGGGTCCAGG 59.782 45.833 0.00 0.00 0.00 4.45
2903 3107 5.070001 TCACAGTTTGATTTAAGGGTCCAG 58.930 41.667 0.00 0.00 0.00 3.86
2904 3108 5.055265 TCACAGTTTGATTTAAGGGTCCA 57.945 39.130 0.00 0.00 0.00 4.02
2920 3127 5.975988 ATAGGTTCCCAACATATCACAGT 57.024 39.130 0.00 0.00 33.49 3.55
2940 3147 7.822749 AGAGAGGTCTCACAGGATATAGATA 57.177 40.000 9.64 0.00 45.21 1.98
2941 3148 6.718593 AGAGAGGTCTCACAGGATATAGAT 57.281 41.667 9.64 0.00 45.21 1.98
2943 3151 6.072728 CGAAAGAGAGGTCTCACAGGATATAG 60.073 46.154 9.64 0.00 45.21 1.31
2945 3153 4.582656 CGAAAGAGAGGTCTCACAGGATAT 59.417 45.833 9.64 0.00 45.21 1.63
2949 3157 2.163509 TCGAAAGAGAGGTCTCACAGG 58.836 52.381 9.64 0.00 45.21 4.00
2950 3158 3.832276 CTTCGAAAGAGAGGTCTCACAG 58.168 50.000 9.64 0.00 45.21 3.66
2951 3159 2.029828 GCTTCGAAAGAGAGGTCTCACA 60.030 50.000 9.64 0.00 45.21 3.58
2952 3160 2.230266 AGCTTCGAAAGAGAGGTCTCAC 59.770 50.000 9.64 0.00 45.21 3.51
2955 3163 2.029470 CACAGCTTCGAAAGAGAGGTCT 60.029 50.000 0.00 0.00 43.69 3.85
2960 3168 4.783764 TGTATCACAGCTTCGAAAGAGA 57.216 40.909 0.00 0.00 43.69 3.10
2969 3177 1.339055 ACGCCACATGTATCACAGCTT 60.339 47.619 0.00 0.00 0.00 3.74
2974 3182 1.016627 ATGCACGCCACATGTATCAC 58.983 50.000 0.00 0.00 0.00 3.06
2980 3188 4.626604 AGAAATAAAAATGCACGCCACATG 59.373 37.500 0.00 0.00 0.00 3.21
2981 3189 4.819769 AGAAATAAAAATGCACGCCACAT 58.180 34.783 0.00 0.00 0.00 3.21
2998 3206 3.550842 GCAGCACCGAAACAAGAAGAAAT 60.551 43.478 0.00 0.00 0.00 2.17
2999 3207 2.223479 GCAGCACCGAAACAAGAAGAAA 60.223 45.455 0.00 0.00 0.00 2.52
3001 3209 0.944386 GCAGCACCGAAACAAGAAGA 59.056 50.000 0.00 0.00 0.00 2.87
3002 3210 0.662619 TGCAGCACCGAAACAAGAAG 59.337 50.000 0.00 0.00 0.00 2.85
3003 3211 0.662619 CTGCAGCACCGAAACAAGAA 59.337 50.000 0.00 0.00 0.00 2.52
3004 3212 0.179059 TCTGCAGCACCGAAACAAGA 60.179 50.000 9.47 0.00 0.00 3.02
3005 3213 0.877071 ATCTGCAGCACCGAAACAAG 59.123 50.000 9.47 0.00 0.00 3.16
3006 3214 1.317613 AATCTGCAGCACCGAAACAA 58.682 45.000 9.47 0.00 0.00 2.83
3007 3215 2.177394 TAATCTGCAGCACCGAAACA 57.823 45.000 9.47 0.00 0.00 2.83
3008 3216 2.677836 TCATAATCTGCAGCACCGAAAC 59.322 45.455 9.47 0.00 0.00 2.78
3013 3221 4.273480 ACGTAAATCATAATCTGCAGCACC 59.727 41.667 9.47 0.00 0.00 5.01
3048 3256 4.680237 TTCAGGCGTGTGCTCGGG 62.680 66.667 6.26 0.00 42.25 5.14
3049 3257 3.114616 CTTCAGGCGTGTGCTCGG 61.115 66.667 6.26 0.00 42.25 4.63
3060 3268 1.077858 GGAGAGCAAGGCCTTCAGG 60.078 63.158 17.29 5.91 38.53 3.86
3061 3269 0.676151 GTGGAGAGCAAGGCCTTCAG 60.676 60.000 17.29 6.76 0.00 3.02
3062 3270 1.376466 GTGGAGAGCAAGGCCTTCA 59.624 57.895 17.29 6.62 0.00 3.02
3064 3272 1.377994 CTGTGGAGAGCAAGGCCTT 59.622 57.895 13.78 13.78 0.00 4.35
3065 3273 3.076092 CTGTGGAGAGCAAGGCCT 58.924 61.111 0.00 0.00 0.00 5.19
3066 3274 2.749441 GCTGTGGAGAGCAAGGCC 60.749 66.667 0.00 0.00 38.95 5.19
3067 3275 0.892814 AAAGCTGTGGAGAGCAAGGC 60.893 55.000 0.00 0.00 41.83 4.35
3068 3276 1.613836 AAAAGCTGTGGAGAGCAAGG 58.386 50.000 0.00 0.00 41.83 3.61
3069 3277 2.620115 TGAAAAAGCTGTGGAGAGCAAG 59.380 45.455 0.00 0.00 41.83 4.01
3070 3278 2.358898 GTGAAAAAGCTGTGGAGAGCAA 59.641 45.455 0.00 0.00 41.83 3.91
3071 3279 1.949525 GTGAAAAAGCTGTGGAGAGCA 59.050 47.619 0.00 0.00 41.83 4.26
3072 3280 1.268079 GGTGAAAAAGCTGTGGAGAGC 59.732 52.381 0.00 0.00 39.46 4.09
3073 3281 2.575532 TGGTGAAAAAGCTGTGGAGAG 58.424 47.619 0.00 0.00 0.00 3.20
3074 3282 2.727123 TGGTGAAAAAGCTGTGGAGA 57.273 45.000 0.00 0.00 0.00 3.71
3075 3283 2.229784 GGATGGTGAAAAAGCTGTGGAG 59.770 50.000 0.00 0.00 0.00 3.86
3076 3284 2.238521 GGATGGTGAAAAAGCTGTGGA 58.761 47.619 0.00 0.00 0.00 4.02
3077 3285 1.962807 TGGATGGTGAAAAAGCTGTGG 59.037 47.619 0.00 0.00 0.00 4.17
3078 3286 2.288395 GGTGGATGGTGAAAAAGCTGTG 60.288 50.000 0.00 0.00 0.00 3.66
3080 3288 2.029649 CAGGTGGATGGTGAAAAAGCTG 60.030 50.000 0.00 0.00 0.00 4.24
3081 3289 2.242043 CAGGTGGATGGTGAAAAAGCT 58.758 47.619 0.00 0.00 0.00 3.74
3082 3290 1.273327 CCAGGTGGATGGTGAAAAAGC 59.727 52.381 0.00 0.00 37.39 3.51
3093 3301 0.036010 CTTCGCTGAACCAGGTGGAT 60.036 55.000 2.10 0.00 38.94 3.41
3094 3302 1.371183 CTTCGCTGAACCAGGTGGA 59.629 57.895 2.10 0.00 38.94 4.02
3095 3303 0.535102 AACTTCGCTGAACCAGGTGG 60.535 55.000 0.00 0.00 42.17 4.61
3096 3304 1.264288 GAAACTTCGCTGAACCAGGTG 59.736 52.381 0.00 0.00 31.21 4.00
3097 3305 1.594331 GAAACTTCGCTGAACCAGGT 58.406 50.000 0.00 0.00 31.21 4.00
3098 3306 0.875059 GGAAACTTCGCTGAACCAGG 59.125 55.000 0.00 0.00 31.21 4.45
3099 3307 0.875059 GGGAAACTTCGCTGAACCAG 59.125 55.000 0.00 0.00 37.19 4.00
3100 3308 0.181587 TGGGAAACTTCGCTGAACCA 59.818 50.000 7.86 0.00 40.42 3.67
3101 3309 0.875059 CTGGGAAACTTCGCTGAACC 59.125 55.000 7.86 0.00 40.06 3.62
3103 3311 1.227999 CGCTGGGAAACTTCGCTGAA 61.228 55.000 14.77 0.00 40.06 3.02
3104 3312 1.667830 CGCTGGGAAACTTCGCTGA 60.668 57.895 14.77 0.00 40.06 4.26
3105 3313 1.227999 TTCGCTGGGAAACTTCGCTG 61.228 55.000 4.52 8.18 40.42 5.18
3106 3314 0.534203 TTTCGCTGGGAAACTTCGCT 60.534 50.000 14.91 0.00 39.67 4.93
3108 3316 1.729149 GCATTTCGCTGGGAAACTTCG 60.729 52.381 20.17 11.23 46.81 3.79
3109 3317 1.269448 TGCATTTCGCTGGGAAACTTC 59.731 47.619 20.17 12.95 46.81 3.01
3110 3318 1.270550 CTGCATTTCGCTGGGAAACTT 59.729 47.619 20.17 4.94 46.81 2.66
3111 3319 0.883833 CTGCATTTCGCTGGGAAACT 59.116 50.000 20.17 8.64 46.81 2.66
3112 3320 0.881118 TCTGCATTTCGCTGGGAAAC 59.119 50.000 20.17 10.57 46.81 2.78
3113 3321 1.271325 TCTCTGCATTTCGCTGGGAAA 60.271 47.619 20.06 20.06 45.23 3.13
3114 3322 0.324614 TCTCTGCATTTCGCTGGGAA 59.675 50.000 2.72 2.72 45.23 3.97
3115 3323 0.391661 GTCTCTGCATTTCGCTGGGA 60.392 55.000 0.00 0.00 45.94 4.37
3118 3326 1.005340 GGAGTCTCTGCATTTCGCTG 58.995 55.000 0.00 0.00 43.06 5.18
3119 3327 0.107945 GGGAGTCTCTGCATTTCGCT 60.108 55.000 0.00 0.00 43.06 4.93
3120 3328 0.391661 TGGGAGTCTCTGCATTTCGC 60.392 55.000 0.00 0.00 42.89 4.70
3121 3329 1.338105 TGTGGGAGTCTCTGCATTTCG 60.338 52.381 0.00 0.00 0.00 3.46
3122 3330 2.079925 GTGTGGGAGTCTCTGCATTTC 58.920 52.381 0.00 0.00 0.00 2.17
3123 3331 1.701847 AGTGTGGGAGTCTCTGCATTT 59.298 47.619 0.00 0.00 0.00 2.32
3124 3332 1.277557 GAGTGTGGGAGTCTCTGCATT 59.722 52.381 0.00 0.00 0.00 3.56
3125 3333 0.901124 GAGTGTGGGAGTCTCTGCAT 59.099 55.000 0.00 0.00 0.00 3.96
3126 3334 1.188219 GGAGTGTGGGAGTCTCTGCA 61.188 60.000 0.00 0.00 0.00 4.41
3127 3335 1.188219 TGGAGTGTGGGAGTCTCTGC 61.188 60.000 0.00 0.00 0.00 4.26
3128 3336 1.480137 GATGGAGTGTGGGAGTCTCTG 59.520 57.143 0.00 0.00 0.00 3.35
3130 3338 1.561643 TGATGGAGTGTGGGAGTCTC 58.438 55.000 0.00 0.00 0.00 3.36
3131 3339 2.114616 GATGATGGAGTGTGGGAGTCT 58.885 52.381 0.00 0.00 0.00 3.24
3133 3341 1.956869 TGATGATGGAGTGTGGGAGT 58.043 50.000 0.00 0.00 0.00 3.85
3134 3342 3.474600 GATTGATGATGGAGTGTGGGAG 58.525 50.000 0.00 0.00 0.00 4.30
3152 3388 4.382577 GCGGGGTATTTGAACAAATGGATT 60.383 41.667 19.00 0.57 40.83 3.01
3153 3389 3.132111 GCGGGGTATTTGAACAAATGGAT 59.868 43.478 19.00 0.89 40.83 3.41
3154 3390 2.494073 GCGGGGTATTTGAACAAATGGA 59.506 45.455 19.00 1.84 40.83 3.41
3155 3391 2.232452 TGCGGGGTATTTGAACAAATGG 59.768 45.455 19.00 7.47 40.83 3.16
3161 3397 1.470805 GCCAATGCGGGGTATTTGAAC 60.471 52.381 0.00 0.00 34.06 3.18
3163 3399 2.499214 GCCAATGCGGGGTATTTGA 58.501 52.632 0.00 0.00 34.06 2.69
3179 3415 1.072666 CGTAGGTTGGTACGTTCGCC 61.073 60.000 0.00 0.00 40.75 5.54
3184 3420 7.100458 AGTTATTATTCGTAGGTTGGTACGT 57.900 36.000 0.00 0.00 44.94 3.57
3185 3421 7.591426 GGTAGTTATTATTCGTAGGTTGGTACG 59.409 40.741 0.00 0.00 45.84 3.67
3186 3422 8.633561 AGGTAGTTATTATTCGTAGGTTGGTAC 58.366 37.037 0.00 0.00 0.00 3.34
3187 3423 8.766994 AGGTAGTTATTATTCGTAGGTTGGTA 57.233 34.615 0.00 0.00 0.00 3.25
3188 3424 7.666063 AGGTAGTTATTATTCGTAGGTTGGT 57.334 36.000 0.00 0.00 0.00 3.67
3205 3441 6.390165 AGCTAAAGGGATTGGATAAGGTAGTT 59.610 38.462 0.00 0.00 0.00 2.24
3207 3443 6.043243 TCAGCTAAAGGGATTGGATAAGGTAG 59.957 42.308 0.00 0.00 0.00 3.18
3208 3444 5.908831 TCAGCTAAAGGGATTGGATAAGGTA 59.091 40.000 0.00 0.00 0.00 3.08
3230 3466 2.432456 GCACCGACTGATGCGTCA 60.432 61.111 8.64 8.64 33.54 4.35
3232 3468 3.649277 GAGGCACCGACTGATGCGT 62.649 63.158 0.00 0.00 43.02 5.24
3233 3469 2.887568 GAGGCACCGACTGATGCG 60.888 66.667 0.00 0.00 43.02 4.73
3234 3470 0.745845 AATGAGGCACCGACTGATGC 60.746 55.000 0.00 0.00 41.29 3.91
3235 3471 1.742761 AAATGAGGCACCGACTGATG 58.257 50.000 0.00 0.00 0.00 3.07
3236 3472 2.026822 AGAAAATGAGGCACCGACTGAT 60.027 45.455 0.00 0.00 0.00 2.90
3238 3474 1.734465 GAGAAAATGAGGCACCGACTG 59.266 52.381 0.00 0.00 0.00 3.51
3239 3475 1.347707 TGAGAAAATGAGGCACCGACT 59.652 47.619 0.00 0.00 0.00 4.18
3240 3476 1.464997 GTGAGAAAATGAGGCACCGAC 59.535 52.381 0.00 0.00 0.00 4.79
3241 3477 1.347707 AGTGAGAAAATGAGGCACCGA 59.652 47.619 0.00 0.00 0.00 4.69
3242 3478 1.466167 CAGTGAGAAAATGAGGCACCG 59.534 52.381 0.00 0.00 0.00 4.94
3243 3479 1.200948 GCAGTGAGAAAATGAGGCACC 59.799 52.381 0.00 0.00 0.00 5.01
3244 3480 2.095364 CAGCAGTGAGAAAATGAGGCAC 60.095 50.000 0.00 0.00 0.00 5.01
3245 3481 2.156917 CAGCAGTGAGAAAATGAGGCA 58.843 47.619 0.00 0.00 0.00 4.75
3246 3482 1.471684 CCAGCAGTGAGAAAATGAGGC 59.528 52.381 0.00 0.00 0.00 4.70
3247 3483 2.746362 GACCAGCAGTGAGAAAATGAGG 59.254 50.000 0.00 0.00 0.00 3.86
3248 3484 2.414481 CGACCAGCAGTGAGAAAATGAG 59.586 50.000 0.00 0.00 0.00 2.90
3249 3485 2.224281 ACGACCAGCAGTGAGAAAATGA 60.224 45.455 0.00 0.00 0.00 2.57
3250 3486 2.146342 ACGACCAGCAGTGAGAAAATG 58.854 47.619 0.00 0.00 0.00 2.32
3251 3487 2.550830 ACGACCAGCAGTGAGAAAAT 57.449 45.000 0.00 0.00 0.00 1.82
3252 3488 2.325583 AACGACCAGCAGTGAGAAAA 57.674 45.000 0.00 0.00 0.00 2.29
3253 3489 2.210116 GAAACGACCAGCAGTGAGAAA 58.790 47.619 0.00 0.00 0.00 2.52
3254 3490 1.865865 GAAACGACCAGCAGTGAGAA 58.134 50.000 0.00 0.00 0.00 2.87
3255 3491 0.318699 CGAAACGACCAGCAGTGAGA 60.319 55.000 0.00 0.00 0.00 3.27
3256 3492 0.597637 ACGAAACGACCAGCAGTGAG 60.598 55.000 0.00 0.00 0.00 3.51
3257 3493 0.179094 AACGAAACGACCAGCAGTGA 60.179 50.000 0.00 0.00 0.00 3.41
3258 3494 0.232303 GAACGAAACGACCAGCAGTG 59.768 55.000 0.00 0.00 0.00 3.66
3259 3495 0.104304 AGAACGAAACGACCAGCAGT 59.896 50.000 0.00 0.00 0.00 4.40
3260 3496 0.784778 GAGAACGAAACGACCAGCAG 59.215 55.000 0.00 0.00 0.00 4.24
3261 3497 0.103390 TGAGAACGAAACGACCAGCA 59.897 50.000 0.00 0.00 0.00 4.41
3262 3498 0.507358 GTGAGAACGAAACGACCAGC 59.493 55.000 0.00 0.00 0.00 4.85
3263 3499 2.135664 AGTGAGAACGAAACGACCAG 57.864 50.000 0.00 0.00 0.00 4.00
3264 3500 2.159212 TCAAGTGAGAACGAAACGACCA 60.159 45.455 0.00 0.00 0.00 4.02
3265 3501 2.466846 TCAAGTGAGAACGAAACGACC 58.533 47.619 0.00 0.00 0.00 4.79
3266 3502 4.710528 ATTCAAGTGAGAACGAAACGAC 57.289 40.909 0.00 0.00 0.00 4.34
3267 3503 4.806775 TCAATTCAAGTGAGAACGAAACGA 59.193 37.500 0.00 0.00 0.00 3.85
3268 3504 5.078153 TCAATTCAAGTGAGAACGAAACG 57.922 39.130 0.00 0.00 0.00 3.60
3269 3505 7.253651 GGTTTTCAATTCAAGTGAGAACGAAAC 60.254 37.037 13.27 8.71 39.68 2.78
3270 3506 6.750039 GGTTTTCAATTCAAGTGAGAACGAAA 59.250 34.615 13.27 0.00 39.68 3.46
3271 3507 6.262601 GGTTTTCAATTCAAGTGAGAACGAA 58.737 36.000 13.27 0.00 39.68 3.85
3272 3508 5.503357 CGGTTTTCAATTCAAGTGAGAACGA 60.503 40.000 13.27 0.00 39.68 3.85
3273 3509 4.670621 CGGTTTTCAATTCAAGTGAGAACG 59.329 41.667 13.27 5.91 39.68 3.95
3274 3510 5.578776 ACGGTTTTCAATTCAAGTGAGAAC 58.421 37.500 11.71 11.71 38.65 3.01
3275 3511 5.828299 ACGGTTTTCAATTCAAGTGAGAA 57.172 34.783 0.00 0.00 0.00 2.87
3276 3512 5.577835 CAACGGTTTTCAATTCAAGTGAGA 58.422 37.500 0.00 0.00 0.00 3.27
3277 3513 4.207019 GCAACGGTTTTCAATTCAAGTGAG 59.793 41.667 0.00 0.00 0.00 3.51
3278 3514 4.109050 GCAACGGTTTTCAATTCAAGTGA 58.891 39.130 0.00 0.00 0.00 3.41
3279 3515 3.061271 CGCAACGGTTTTCAATTCAAGTG 60.061 43.478 0.00 0.00 0.00 3.16
3280 3516 3.112580 CGCAACGGTTTTCAATTCAAGT 58.887 40.909 0.00 0.00 0.00 3.16
3281 3517 2.097444 GCGCAACGGTTTTCAATTCAAG 60.097 45.455 0.30 0.00 0.00 3.02
3282 3518 1.855360 GCGCAACGGTTTTCAATTCAA 59.145 42.857 0.30 0.00 0.00 2.69
3283 3519 1.202302 TGCGCAACGGTTTTCAATTCA 60.202 42.857 8.16 0.00 0.00 2.57
3284 3520 1.482278 TGCGCAACGGTTTTCAATTC 58.518 45.000 8.16 0.00 0.00 2.17
3285 3521 1.927895 TTGCGCAACGGTTTTCAATT 58.072 40.000 21.02 0.00 0.00 2.32
3286 3522 1.791785 CATTGCGCAACGGTTTTCAAT 59.208 42.857 27.64 1.66 0.00 2.57
3287 3523 1.203928 CATTGCGCAACGGTTTTCAA 58.796 45.000 27.64 0.00 0.00 2.69
3288 3524 0.596083 CCATTGCGCAACGGTTTTCA 60.596 50.000 26.38 0.29 0.00 2.69
3289 3525 0.318275 TCCATTGCGCAACGGTTTTC 60.318 50.000 31.90 0.00 0.00 2.29
3290 3526 0.316841 ATCCATTGCGCAACGGTTTT 59.683 45.000 31.90 16.91 0.00 2.43
3291 3527 0.109319 GATCCATTGCGCAACGGTTT 60.109 50.000 31.90 21.58 0.00 3.27
3292 3528 1.506262 GATCCATTGCGCAACGGTT 59.494 52.632 31.90 25.19 0.00 4.44
3293 3529 2.749865 CGATCCATTGCGCAACGGT 61.750 57.895 31.90 20.43 0.00 4.83
3294 3530 1.425267 TACGATCCATTGCGCAACGG 61.425 55.000 28.54 28.54 0.00 4.44
3295 3531 0.581529 ATACGATCCATTGCGCAACG 59.418 50.000 27.64 25.00 0.00 4.10
3296 3532 2.300623 GATACGATCCATTGCGCAAC 57.699 50.000 27.64 11.52 0.00 4.17
3307 3543 3.821421 AAAGTGTGGGAGGATACGATC 57.179 47.619 0.00 0.00 46.39 3.69
3308 3544 3.118371 GGAAAAGTGTGGGAGGATACGAT 60.118 47.826 0.00 0.00 46.39 3.73
3309 3545 2.235402 GGAAAAGTGTGGGAGGATACGA 59.765 50.000 0.00 0.00 46.39 3.43
3310 3546 2.629051 GGAAAAGTGTGGGAGGATACG 58.371 52.381 0.00 0.00 46.39 3.06
3311 3547 2.576648 AGGGAAAAGTGTGGGAGGATAC 59.423 50.000 0.00 0.00 0.00 2.24
3312 3548 2.929301 AGGGAAAAGTGTGGGAGGATA 58.071 47.619 0.00 0.00 0.00 2.59
3313 3549 1.760405 AGGGAAAAGTGTGGGAGGAT 58.240 50.000 0.00 0.00 0.00 3.24
3314 3550 1.144913 CAAGGGAAAAGTGTGGGAGGA 59.855 52.381 0.00 0.00 0.00 3.71
3315 3551 1.620822 CAAGGGAAAAGTGTGGGAGG 58.379 55.000 0.00 0.00 0.00 4.30
3316 3552 1.144913 TCCAAGGGAAAAGTGTGGGAG 59.855 52.381 0.00 0.00 0.00 4.30
3317 3553 1.227249 TCCAAGGGAAAAGTGTGGGA 58.773 50.000 0.00 0.00 0.00 4.37
3318 3554 2.299867 CAATCCAAGGGAAAAGTGTGGG 59.700 50.000 0.00 0.00 34.34 4.61
3319 3555 2.299867 CCAATCCAAGGGAAAAGTGTGG 59.700 50.000 0.00 0.00 34.34 4.17
3320 3556 3.230134 TCCAATCCAAGGGAAAAGTGTG 58.770 45.455 0.00 0.00 34.34 3.82
3321 3557 3.611025 TCCAATCCAAGGGAAAAGTGT 57.389 42.857 0.00 0.00 34.34 3.55
3322 3558 5.480073 TGTTATCCAATCCAAGGGAAAAGTG 59.520 40.000 0.00 0.00 36.62 3.16
3323 3559 5.650283 TGTTATCCAATCCAAGGGAAAAGT 58.350 37.500 0.00 0.00 36.62 2.66
3324 3560 5.394553 GCTGTTATCCAATCCAAGGGAAAAG 60.395 44.000 0.00 0.00 36.62 2.27
3325 3561 4.466015 GCTGTTATCCAATCCAAGGGAAAA 59.534 41.667 0.00 0.00 36.62 2.29
3326 3562 4.023291 GCTGTTATCCAATCCAAGGGAAA 58.977 43.478 0.00 0.00 36.62 3.13
3327 3563 3.269381 AGCTGTTATCCAATCCAAGGGAA 59.731 43.478 0.00 0.00 36.62 3.97
3328 3564 2.852449 AGCTGTTATCCAATCCAAGGGA 59.148 45.455 0.00 0.00 37.64 4.20
3329 3565 3.303351 AGCTGTTATCCAATCCAAGGG 57.697 47.619 0.00 0.00 0.00 3.95
3330 3566 3.633986 GGAAGCTGTTATCCAATCCAAGG 59.366 47.826 0.00 0.00 35.71 3.61
3331 3567 3.313526 CGGAAGCTGTTATCCAATCCAAG 59.686 47.826 3.16 0.00 35.34 3.61
3332 3568 3.278574 CGGAAGCTGTTATCCAATCCAA 58.721 45.455 3.16 0.00 35.34 3.53
3333 3569 2.238646 ACGGAAGCTGTTATCCAATCCA 59.761 45.455 3.16 0.00 35.34 3.41
3334 3570 2.919228 ACGGAAGCTGTTATCCAATCC 58.081 47.619 3.16 0.00 35.34 3.01
3335 3571 4.394920 TGAAACGGAAGCTGTTATCCAATC 59.605 41.667 3.16 0.00 35.34 2.67
3336 3572 4.331968 TGAAACGGAAGCTGTTATCCAAT 58.668 39.130 3.16 0.00 35.34 3.16
3337 3573 3.745799 TGAAACGGAAGCTGTTATCCAA 58.254 40.909 3.16 0.00 35.34 3.53
3338 3574 3.244422 ACTGAAACGGAAGCTGTTATCCA 60.244 43.478 3.16 0.00 35.34 3.41
3339 3575 3.335579 ACTGAAACGGAAGCTGTTATCC 58.664 45.455 0.00 0.00 32.14 2.59
3340 3576 4.329256 GGTACTGAAACGGAAGCTGTTATC 59.671 45.833 0.00 0.00 32.14 1.75
3341 3577 4.251268 GGTACTGAAACGGAAGCTGTTAT 58.749 43.478 0.00 0.00 32.14 1.89
3342 3578 3.069872 TGGTACTGAAACGGAAGCTGTTA 59.930 43.478 0.00 0.00 32.14 2.41
3343 3579 2.158871 TGGTACTGAAACGGAAGCTGTT 60.159 45.455 0.00 0.00 34.04 3.16
3344 3580 1.414919 TGGTACTGAAACGGAAGCTGT 59.585 47.619 0.00 0.00 0.00 4.40
3345 3581 2.163818 TGGTACTGAAACGGAAGCTG 57.836 50.000 0.00 0.00 0.00 4.24
3346 3582 3.418684 AATGGTACTGAAACGGAAGCT 57.581 42.857 0.00 0.00 0.00 3.74
3347 3583 4.215613 AGAAAATGGTACTGAAACGGAAGC 59.784 41.667 0.00 0.00 0.00 3.86
3348 3584 5.941948 AGAAAATGGTACTGAAACGGAAG 57.058 39.130 0.00 0.00 0.00 3.46
3349 3585 5.823570 TCAAGAAAATGGTACTGAAACGGAA 59.176 36.000 0.00 0.00 0.00 4.30
3350 3586 5.369833 TCAAGAAAATGGTACTGAAACGGA 58.630 37.500 0.00 0.00 0.00 4.69
3351 3587 5.682943 TCAAGAAAATGGTACTGAAACGG 57.317 39.130 0.00 0.00 0.00 4.44
3352 3588 6.017440 TCCTTCAAGAAAATGGTACTGAAACG 60.017 38.462 0.00 0.00 0.00 3.60
3353 3589 7.272037 TCCTTCAAGAAAATGGTACTGAAAC 57.728 36.000 0.00 0.00 0.00 2.78
3354 3590 8.477419 AATCCTTCAAGAAAATGGTACTGAAA 57.523 30.769 0.00 0.00 0.00 2.69
3355 3591 7.944554 AGAATCCTTCAAGAAAATGGTACTGAA 59.055 33.333 0.00 0.00 0.00 3.02
3356 3592 7.391554 CAGAATCCTTCAAGAAAATGGTACTGA 59.608 37.037 0.00 0.00 0.00 3.41
3357 3593 7.533426 CAGAATCCTTCAAGAAAATGGTACTG 58.467 38.462 0.00 0.00 0.00 2.74
3358 3594 6.151817 GCAGAATCCTTCAAGAAAATGGTACT 59.848 38.462 0.00 0.00 0.00 2.73
3359 3595 6.151817 AGCAGAATCCTTCAAGAAAATGGTAC 59.848 38.462 0.00 0.00 0.00 3.34
3360 3596 6.248433 AGCAGAATCCTTCAAGAAAATGGTA 58.752 36.000 0.00 0.00 0.00 3.25
3361 3597 5.082425 AGCAGAATCCTTCAAGAAAATGGT 58.918 37.500 0.00 0.00 0.00 3.55
3362 3598 5.656213 AGCAGAATCCTTCAAGAAAATGG 57.344 39.130 0.00 0.00 0.00 3.16
3363 3599 5.347907 GCAAGCAGAATCCTTCAAGAAAATG 59.652 40.000 0.00 0.00 0.00 2.32
3364 3600 5.245526 AGCAAGCAGAATCCTTCAAGAAAAT 59.754 36.000 0.00 0.00 0.00 1.82
3406 3642 6.425210 TCCATCCTTCATGTAATACCAGAG 57.575 41.667 0.00 0.00 0.00 3.35
3408 3644 6.772605 TGATCCATCCTTCATGTAATACCAG 58.227 40.000 0.00 0.00 0.00 4.00
3409 3645 6.762077 TGATCCATCCTTCATGTAATACCA 57.238 37.500 0.00 0.00 0.00 3.25
3410 3646 7.502226 TGTTTGATCCATCCTTCATGTAATACC 59.498 37.037 0.00 0.00 0.00 2.73
3414 3653 7.574779 CGTTTGTTTGATCCATCCTTCATGTAA 60.575 37.037 0.00 0.00 0.00 2.41
3423 3662 4.440112 GGGAATCGTTTGTTTGATCCATCC 60.440 45.833 0.00 0.00 0.00 3.51
3424 3663 4.672409 GGGAATCGTTTGTTTGATCCATC 58.328 43.478 0.00 0.00 0.00 3.51
3436 3675 2.609737 GCTCGGATATCGGGAATCGTTT 60.610 50.000 10.11 0.00 43.26 3.60
3437 3676 1.067776 GCTCGGATATCGGGAATCGTT 60.068 52.381 10.11 0.00 43.26 3.85
3438 3677 0.526662 GCTCGGATATCGGGAATCGT 59.473 55.000 10.11 0.00 43.26 3.73
3439 3678 0.526211 TGCTCGGATATCGGGAATCG 59.474 55.000 10.11 0.93 43.26 3.34
3440 3679 2.093973 ACATGCTCGGATATCGGGAATC 60.094 50.000 10.11 0.59 43.26 2.52
3441 3680 1.902508 ACATGCTCGGATATCGGGAAT 59.097 47.619 10.11 0.00 43.26 3.01
3442 3681 1.338107 ACATGCTCGGATATCGGGAA 58.662 50.000 10.11 0.00 43.26 3.97
3443 3682 2.209690 TACATGCTCGGATATCGGGA 57.790 50.000 10.11 3.11 43.26 5.14
3444 3683 2.223829 GGATACATGCTCGGATATCGGG 60.224 54.545 10.11 0.80 43.49 5.14
3445 3684 2.427095 TGGATACATGCTCGGATATCGG 59.573 50.000 3.94 3.94 46.17 4.18
3446 3685 3.782889 TGGATACATGCTCGGATATCG 57.217 47.619 0.00 0.00 46.17 2.92
3487 3726 4.382040 CCATCTGTTTATCTGACTGACGGT 60.382 45.833 0.00 0.00 0.00 4.83
3490 3729 6.183360 GCTTTCCATCTGTTTATCTGACTGAC 60.183 42.308 0.00 0.00 0.00 3.51
3492 3731 5.645067 TGCTTTCCATCTGTTTATCTGACTG 59.355 40.000 0.00 0.00 0.00 3.51
3495 3734 4.631377 CGTGCTTTCCATCTGTTTATCTGA 59.369 41.667 0.00 0.00 0.00 3.27
3499 3738 4.154195 GTGTCGTGCTTTCCATCTGTTTAT 59.846 41.667 0.00 0.00 0.00 1.40
3509 3752 4.072088 CCGCGTGTCGTGCTTTCC 62.072 66.667 4.92 0.00 35.94 3.13
3510 3753 4.719616 GCCGCGTGTCGTGCTTTC 62.720 66.667 4.92 0.00 35.94 2.62
3535 3778 2.420890 GGGAGAGATGAGCAGGCG 59.579 66.667 0.00 0.00 0.00 5.52
3540 3783 1.330655 TTCACGGGGGAGAGATGAGC 61.331 60.000 0.00 0.00 0.00 4.26
3541 3784 1.195115 TTTCACGGGGGAGAGATGAG 58.805 55.000 0.00 0.00 0.00 2.90
3542 3785 1.651737 TTTTCACGGGGGAGAGATGA 58.348 50.000 0.00 0.00 0.00 2.92
3543 3786 2.359900 CTTTTTCACGGGGGAGAGATG 58.640 52.381 0.00 0.00 0.00 2.90
3555 3798 0.588252 TGCTCTCTGCGCTTTTTCAC 59.412 50.000 9.73 0.00 46.63 3.18
3559 3808 2.393271 ATACTGCTCTCTGCGCTTTT 57.607 45.000 9.73 0.00 46.63 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.