Multiple sequence alignment - TraesCS3B01G433000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G433000 chr3B 100.000 4309 0 0 1 4309 671995341 671999649 0.000000e+00 7958.0
1 TraesCS3B01G433000 chr3B 94.186 344 18 2 1 343 671882533 671882875 1.370000e-144 523.0
2 TraesCS3B01G433000 chr3B 86.066 122 16 1 3925 4045 672097348 672097469 3.500000e-26 130.0
3 TraesCS3B01G433000 chr3B 84.043 94 13 1 3954 4045 672078070 672078163 5.940000e-14 89.8
4 TraesCS3B01G433000 chr3D 90.512 3341 144 51 428 3688 509228133 509231380 0.000000e+00 4253.0
5 TraesCS3B01G433000 chr3D 92.724 536 32 4 1507 2035 440219603 440219068 0.000000e+00 767.0
6 TraesCS3B01G433000 chr3D 85.519 366 29 8 2064 2415 440219068 440218713 1.140000e-95 361.0
7 TraesCS3B01G433000 chr3D 84.021 388 28 14 3925 4285 509231557 509231937 4.130000e-90 342.0
8 TraesCS3B01G433000 chr3D 85.882 170 17 5 3925 4088 509241239 509241407 1.590000e-39 174.0
9 TraesCS3B01G433000 chr3D 96.117 103 4 0 3681 3783 548401312 548401414 7.410000e-38 169.0
10 TraesCS3B01G433000 chr3D 90.756 119 10 1 3677 3795 131009418 131009535 1.600000e-34 158.0
11 TraesCS3B01G433000 chr3D 79.793 193 28 7 3362 3547 465766836 465767024 3.500000e-26 130.0
12 TraesCS3B01G433000 chr3D 88.235 51 6 0 343 393 509227941 509227991 1.290000e-05 62.1
13 TraesCS3B01G433000 chr3A 90.029 2397 104 49 407 2737 646811474 646813801 0.000000e+00 2977.0
14 TraesCS3B01G433000 chr3A 92.206 834 37 12 2855 3685 646813834 646814642 0.000000e+00 1155.0
15 TraesCS3B01G433000 chr3A 85.255 373 36 12 3925 4285 646814845 646815210 2.450000e-97 366.0
16 TraesCS3B01G433000 chr3A 80.000 195 23 9 3362 3547 6675172 6675359 3.500000e-26 130.0
17 TraesCS3B01G433000 chr2D 88.397 1129 71 24 1507 2614 571962960 571964049 0.000000e+00 1304.0
18 TraesCS3B01G433000 chr2D 89.735 565 35 10 2064 2614 29676538 29675983 0.000000e+00 701.0
19 TraesCS3B01G433000 chr2D 94.366 142 8 0 1894 2035 29676679 29676538 7.250000e-53 219.0
20 TraesCS3B01G433000 chr5B 81.499 1054 136 30 2333 3363 470977629 470976612 0.000000e+00 811.0
21 TraesCS3B01G433000 chr5B 93.300 403 27 0 997 1399 470978982 470978580 2.870000e-166 595.0
22 TraesCS3B01G433000 chr5B 93.623 345 16 6 1 343 212865278 212864938 1.070000e-140 510.0
23 TraesCS3B01G433000 chr5B 93.333 345 16 7 1 342 72042924 72042584 1.790000e-138 503.0
24 TraesCS3B01G433000 chr5B 93.043 345 18 6 1 343 212833425 212833085 2.310000e-137 499.0
25 TraesCS3B01G433000 chr5B 92.754 345 20 5 1 343 212937564 212937223 1.080000e-135 494.0
26 TraesCS3B01G433000 chr5B 92.754 345 20 5 1 343 600638179 600637838 1.080000e-135 494.0
27 TraesCS3B01G433000 chr5B 77.720 193 28 10 3362 3547 409149623 409149807 2.120000e-18 104.0
28 TraesCS3B01G433000 chr1D 87.755 735 38 14 1894 2614 359550470 359549774 0.000000e+00 811.0
29 TraesCS3B01G433000 chr5A 81.398 1059 138 28 2324 3363 493865561 493864543 0.000000e+00 809.0
30 TraesCS3B01G433000 chr5A 94.041 386 23 0 1014 1399 493866874 493866489 1.730000e-163 586.0
31 TraesCS3B01G433000 chr5A 83.473 357 33 11 2064 2405 456004360 456004015 4.180000e-80 309.0
32 TraesCS3B01G433000 chr5A 78.646 192 31 7 3362 3547 122638236 122638049 7.570000e-23 119.0
33 TraesCS3B01G433000 chr5D 80.773 1061 158 26 2318 3363 390571802 390570773 0.000000e+00 787.0
34 TraesCS3B01G433000 chr5D 86.992 738 44 11 1891 2614 12361319 12362018 0.000000e+00 784.0
35 TraesCS3B01G433000 chr5D 93.548 403 26 0 997 1399 390573151 390572749 6.170000e-168 601.0
36 TraesCS3B01G433000 chr5D 79.512 205 40 2 1184 1387 527842124 527841921 1.250000e-30 145.0
37 TraesCS3B01G433000 chr2B 94.767 344 16 2 1 343 578922250 578922592 6.340000e-148 534.0
38 TraesCS3B01G433000 chr2B 93.084 347 20 4 1 344 578943839 578944184 4.970000e-139 505.0
39 TraesCS3B01G433000 chr2B 93.003 343 19 4 3 343 401747057 401747396 2.990000e-136 496.0
40 TraesCS3B01G433000 chr2A 84.722 360 30 8 2061 2405 763539545 763539894 1.920000e-88 337.0
41 TraesCS3B01G433000 chr2A 84.921 126 19 0 3951 4076 53220692 53220567 1.260000e-25 128.0
42 TraesCS3B01G433000 chr1B 83.754 357 33 7 2064 2405 522941785 522941439 8.990000e-82 315.0
43 TraesCS3B01G433000 chr1B 93.458 107 6 1 3684 3790 543023057 543023162 1.600000e-34 158.0
44 TraesCS3B01G433000 chr1B 85.714 91 12 1 1270 1359 628218971 628219061 1.280000e-15 95.3
45 TraesCS3B01G433000 chr4B 95.035 141 7 0 1895 2035 41177916 41178056 5.610000e-54 222.0
46 TraesCS3B01G433000 chr4B 94.286 105 5 1 3687 3791 315742460 315742563 4.460000e-35 159.0
47 TraesCS3B01G433000 chr4B 91.964 112 7 2 3674 3783 315720335 315720446 5.770000e-34 156.0
48 TraesCS3B01G433000 chr7B 77.067 375 40 26 3951 4293 664034937 664035297 1.590000e-39 174.0
49 TraesCS3B01G433000 chr7B 95.098 102 5 0 3686 3787 5263737 5263838 1.240000e-35 161.0
50 TraesCS3B01G433000 chr7B 91.892 111 7 2 3687 3796 458786202 458786311 2.080000e-33 154.0
51 TraesCS3B01G433000 chr7B 78.125 192 40 2 1184 1374 411059978 411059788 2.100000e-23 121.0
52 TraesCS3B01G433000 chr6B 92.661 109 5 2 3684 3791 14820678 14820572 2.080000e-33 154.0
53 TraesCS3B01G433000 chr1A 90.826 109 8 2 3685 3792 255757798 255757905 1.250000e-30 145.0
54 TraesCS3B01G433000 chr1A 78.756 193 30 7 3362 3547 291674988 291674800 7.570000e-23 119.0
55 TraesCS3B01G433000 chr1A 78.756 193 30 7 3362 3547 309692195 309692383 7.570000e-23 119.0
56 TraesCS3B01G433000 chr7A 79.167 192 38 2 1184 1374 459210136 459209946 9.720000e-27 132.0
57 TraesCS3B01G433000 chr7A 84.921 126 19 0 3951 4076 160167567 160167442 1.260000e-25 128.0
58 TraesCS3B01G433000 chrUn 79.793 193 28 7 3362 3547 101227512 101227324 3.500000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G433000 chr3B 671995341 671999649 4308 False 7958.000000 7958 100.000000 1 4309 1 chr3B.!!$F2 4308
1 TraesCS3B01G433000 chr3D 509227941 509231937 3996 False 1552.366667 4253 87.589333 343 4285 3 chr3D.!!$F5 3942
2 TraesCS3B01G433000 chr3D 440218713 440219603 890 True 564.000000 767 89.121500 1507 2415 2 chr3D.!!$R1 908
3 TraesCS3B01G433000 chr3A 646811474 646815210 3736 False 1499.333333 2977 89.163333 407 4285 3 chr3A.!!$F2 3878
4 TraesCS3B01G433000 chr2D 571962960 571964049 1089 False 1304.000000 1304 88.397000 1507 2614 1 chr2D.!!$F1 1107
5 TraesCS3B01G433000 chr2D 29675983 29676679 696 True 460.000000 701 92.050500 1894 2614 2 chr2D.!!$R1 720
6 TraesCS3B01G433000 chr5B 470976612 470978982 2370 True 703.000000 811 87.399500 997 3363 2 chr5B.!!$R6 2366
7 TraesCS3B01G433000 chr1D 359549774 359550470 696 True 811.000000 811 87.755000 1894 2614 1 chr1D.!!$R1 720
8 TraesCS3B01G433000 chr5A 493864543 493866874 2331 True 697.500000 809 87.719500 1014 3363 2 chr5A.!!$R3 2349
9 TraesCS3B01G433000 chr5D 12361319 12362018 699 False 784.000000 784 86.992000 1891 2614 1 chr5D.!!$F1 723
10 TraesCS3B01G433000 chr5D 390570773 390573151 2378 True 694.000000 787 87.160500 997 3363 2 chr5D.!!$R2 2366

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
382 383 0.034896 GCTCGGAGAAGGTTGGACAA 59.965 55.0 9.69 0.0 34.09 3.18 F
569 695 0.687354 GAAGGCTGGGACTGTTCTCA 59.313 55.0 0.00 0.0 0.00 3.27 F
1428 1626 0.685097 CCCCCGAATCACCATCGTAT 59.315 55.0 0.00 0.0 38.60 3.06 F
2647 3223 0.179000 GCATCAACTCGGTGGAGGAT 59.821 55.0 0.00 0.0 44.93 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1409 1607 0.685097 ATACGATGGTGATTCGGGGG 59.315 55.000 0.00 0.0 40.83 5.40 R
1471 1669 2.281276 GGACGGGCAAGAAACGGT 60.281 61.111 0.00 0.0 0.00 4.83 R
3064 3657 0.832983 AAAGGAGGCATTTGCAGGCA 60.833 50.000 4.74 0.0 44.36 4.75 R
3766 4378 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.0 0.00 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.848694 GGGTAGGCCTATATAAACCCCC 59.151 54.545 23.88 18.69 40.62 5.40
49 50 1.856629 CCCATGCAAAGGGTTGATCT 58.143 50.000 17.30 0.00 41.61 2.75
50 51 1.753073 CCCATGCAAAGGGTTGATCTC 59.247 52.381 17.30 0.00 41.61 2.75
51 52 2.622452 CCCATGCAAAGGGTTGATCTCT 60.622 50.000 17.30 0.00 41.61 3.10
52 53 3.094572 CCATGCAAAGGGTTGATCTCTT 58.905 45.455 0.00 0.00 38.72 2.85
53 54 4.272489 CCATGCAAAGGGTTGATCTCTTA 58.728 43.478 0.00 0.00 35.54 2.10
54 55 4.337555 CCATGCAAAGGGTTGATCTCTTAG 59.662 45.833 0.00 0.00 35.54 2.18
55 56 4.908601 TGCAAAGGGTTGATCTCTTAGA 57.091 40.909 0.00 0.00 35.54 2.10
56 57 4.836825 TGCAAAGGGTTGATCTCTTAGAG 58.163 43.478 2.23 2.23 35.54 2.43
57 58 4.532126 TGCAAAGGGTTGATCTCTTAGAGA 59.468 41.667 14.78 14.78 35.54 3.10
58 59 5.013079 TGCAAAGGGTTGATCTCTTAGAGAA 59.987 40.000 16.40 0.00 37.44 2.87
59 60 5.940470 GCAAAGGGTTGATCTCTTAGAGAAA 59.060 40.000 16.40 4.17 37.44 2.52
60 61 6.128145 GCAAAGGGTTGATCTCTTAGAGAAAC 60.128 42.308 16.40 15.54 37.44 2.78
61 62 6.688073 AAGGGTTGATCTCTTAGAGAAACA 57.312 37.500 21.27 18.12 42.27 2.83
62 63 6.043854 AGGGTTGATCTCTTAGAGAAACAC 57.956 41.667 21.27 19.22 42.27 3.32
63 64 5.544176 AGGGTTGATCTCTTAGAGAAACACA 59.456 40.000 23.12 15.35 42.27 3.72
64 65 5.639931 GGGTTGATCTCTTAGAGAAACACAC 59.360 44.000 21.27 18.31 42.27 3.82
65 66 6.223852 GGTTGATCTCTTAGAGAAACACACA 58.776 40.000 21.27 11.34 42.27 3.72
66 67 6.146347 GGTTGATCTCTTAGAGAAACACACAC 59.854 42.308 21.27 15.84 42.27 3.82
67 68 6.405278 TGATCTCTTAGAGAAACACACACA 57.595 37.500 16.40 4.40 42.27 3.72
68 69 6.216569 TGATCTCTTAGAGAAACACACACAC 58.783 40.000 16.40 0.00 42.27 3.82
69 70 4.945246 TCTCTTAGAGAAACACACACACC 58.055 43.478 9.80 0.00 35.59 4.16
70 71 4.404394 TCTCTTAGAGAAACACACACACCA 59.596 41.667 9.80 0.00 35.59 4.17
71 72 4.439057 TCTTAGAGAAACACACACACCAC 58.561 43.478 0.00 0.00 0.00 4.16
72 73 2.779755 AGAGAAACACACACACCACA 57.220 45.000 0.00 0.00 0.00 4.17
73 74 3.281727 AGAGAAACACACACACCACAT 57.718 42.857 0.00 0.00 0.00 3.21
74 75 4.415881 AGAGAAACACACACACCACATA 57.584 40.909 0.00 0.00 0.00 2.29
75 76 4.380531 AGAGAAACACACACACCACATAG 58.619 43.478 0.00 0.00 0.00 2.23
76 77 4.100963 AGAGAAACACACACACCACATAGA 59.899 41.667 0.00 0.00 0.00 1.98
77 78 4.380531 AGAAACACACACACCACATAGAG 58.619 43.478 0.00 0.00 0.00 2.43
78 79 4.100963 AGAAACACACACACCACATAGAGA 59.899 41.667 0.00 0.00 0.00 3.10
79 80 3.667497 ACACACACACCACATAGAGAG 57.333 47.619 0.00 0.00 0.00 3.20
80 81 3.230976 ACACACACACCACATAGAGAGA 58.769 45.455 0.00 0.00 0.00 3.10
81 82 3.641436 ACACACACACCACATAGAGAGAA 59.359 43.478 0.00 0.00 0.00 2.87
82 83 4.240888 CACACACACCACATAGAGAGAAG 58.759 47.826 0.00 0.00 0.00 2.85
83 84 4.021981 CACACACACCACATAGAGAGAAGA 60.022 45.833 0.00 0.00 0.00 2.87
84 85 4.219507 ACACACACCACATAGAGAGAAGAG 59.780 45.833 0.00 0.00 0.00 2.85
85 86 3.766591 ACACACCACATAGAGAGAAGAGG 59.233 47.826 0.00 0.00 0.00 3.69
86 87 4.019858 CACACCACATAGAGAGAAGAGGA 58.980 47.826 0.00 0.00 0.00 3.71
87 88 4.097741 CACACCACATAGAGAGAAGAGGAG 59.902 50.000 0.00 0.00 0.00 3.69
88 89 4.017958 ACACCACATAGAGAGAAGAGGAGA 60.018 45.833 0.00 0.00 0.00 3.71
89 90 4.580167 CACCACATAGAGAGAAGAGGAGAG 59.420 50.000 0.00 0.00 0.00 3.20
90 91 3.569701 CCACATAGAGAGAAGAGGAGAGC 59.430 52.174 0.00 0.00 0.00 4.09
91 92 4.464008 CACATAGAGAGAAGAGGAGAGCT 58.536 47.826 0.00 0.00 0.00 4.09
92 93 5.456042 CCACATAGAGAGAAGAGGAGAGCTA 60.456 48.000 0.00 0.00 0.00 3.32
93 94 5.702670 CACATAGAGAGAAGAGGAGAGCTAG 59.297 48.000 0.00 0.00 0.00 3.42
94 95 3.214696 AGAGAGAAGAGGAGAGCTAGC 57.785 52.381 6.62 6.62 0.00 3.42
95 96 2.158608 AGAGAGAAGAGGAGAGCTAGCC 60.159 54.545 12.13 2.81 0.00 3.93
96 97 1.852965 AGAGAAGAGGAGAGCTAGCCT 59.147 52.381 12.13 8.35 37.18 4.58
97 98 2.244769 AGAGAAGAGGAGAGCTAGCCTT 59.755 50.000 12.13 6.22 33.84 4.35
98 99 2.362077 GAGAAGAGGAGAGCTAGCCTTG 59.638 54.545 12.13 0.00 33.84 3.61
99 100 0.829990 AAGAGGAGAGCTAGCCTTGC 59.170 55.000 12.13 5.22 33.84 4.01
100 101 1.048160 AGAGGAGAGCTAGCCTTGCC 61.048 60.000 12.13 8.23 33.84 4.52
101 102 2.038814 GAGGAGAGCTAGCCTTGCCC 62.039 65.000 12.13 6.13 33.84 5.36
102 103 2.069430 GGAGAGCTAGCCTTGCCCT 61.069 63.158 12.13 0.00 0.00 5.19
103 104 1.631071 GGAGAGCTAGCCTTGCCCTT 61.631 60.000 12.13 0.00 0.00 3.95
104 105 0.179059 GAGAGCTAGCCTTGCCCTTC 60.179 60.000 12.13 0.00 0.00 3.46
105 106 0.620121 AGAGCTAGCCTTGCCCTTCT 60.620 55.000 12.13 1.71 0.00 2.85
106 107 0.254462 GAGCTAGCCTTGCCCTTCTT 59.746 55.000 12.13 0.00 0.00 2.52
107 108 0.254462 AGCTAGCCTTGCCCTTCTTC 59.746 55.000 12.13 0.00 0.00 2.87
108 109 0.254462 GCTAGCCTTGCCCTTCTTCT 59.746 55.000 2.29 0.00 0.00 2.85
109 110 1.340502 GCTAGCCTTGCCCTTCTTCTT 60.341 52.381 2.29 0.00 0.00 2.52
110 111 2.637947 CTAGCCTTGCCCTTCTTCTTC 58.362 52.381 0.00 0.00 0.00 2.87
111 112 0.038890 AGCCTTGCCCTTCTTCTTCC 59.961 55.000 0.00 0.00 0.00 3.46
112 113 0.038890 GCCTTGCCCTTCTTCTTCCT 59.961 55.000 0.00 0.00 0.00 3.36
113 114 1.548809 GCCTTGCCCTTCTTCTTCCTT 60.549 52.381 0.00 0.00 0.00 3.36
114 115 2.881734 CCTTGCCCTTCTTCTTCCTTT 58.118 47.619 0.00 0.00 0.00 3.11
115 116 3.814316 GCCTTGCCCTTCTTCTTCCTTTA 60.814 47.826 0.00 0.00 0.00 1.85
116 117 4.013050 CCTTGCCCTTCTTCTTCCTTTAG 58.987 47.826 0.00 0.00 0.00 1.85
117 118 3.073274 TGCCCTTCTTCTTCCTTTAGC 57.927 47.619 0.00 0.00 0.00 3.09
118 119 2.375174 TGCCCTTCTTCTTCCTTTAGCA 59.625 45.455 0.00 0.00 0.00 3.49
119 120 3.181434 TGCCCTTCTTCTTCCTTTAGCAA 60.181 43.478 0.00 0.00 0.00 3.91
120 121 3.826729 GCCCTTCTTCTTCCTTTAGCAAA 59.173 43.478 0.00 0.00 0.00 3.68
121 122 4.321304 GCCCTTCTTCTTCCTTTAGCAAAC 60.321 45.833 0.00 0.00 0.00 2.93
122 123 4.827284 CCCTTCTTCTTCCTTTAGCAAACA 59.173 41.667 0.00 0.00 0.00 2.83
123 124 5.048434 CCCTTCTTCTTCCTTTAGCAAACAG 60.048 44.000 0.00 0.00 0.00 3.16
124 125 5.438761 TTCTTCTTCCTTTAGCAAACAGC 57.561 39.130 0.00 0.00 46.19 4.40
143 144 2.307934 CTCAAGGAGCCTCTTGTAGC 57.692 55.000 13.95 0.00 43.25 3.58
144 145 1.830477 CTCAAGGAGCCTCTTGTAGCT 59.170 52.381 13.95 0.00 43.25 3.32
145 146 3.027412 CTCAAGGAGCCTCTTGTAGCTA 58.973 50.000 13.95 0.00 43.25 3.32
146 147 2.761208 TCAAGGAGCCTCTTGTAGCTAC 59.239 50.000 17.30 17.30 43.25 3.58
147 148 2.838637 AGGAGCCTCTTGTAGCTACT 57.161 50.000 23.84 2.22 45.74 2.57
150 151 4.310357 GGAGCCTCTTGTAGCTACTTAC 57.690 50.000 23.84 1.00 40.11 2.34
151 152 3.955551 GGAGCCTCTTGTAGCTACTTACT 59.044 47.826 23.84 12.47 40.11 2.24
152 153 4.202070 GGAGCCTCTTGTAGCTACTTACTG 60.202 50.000 23.84 11.23 40.11 2.74
153 154 4.601084 AGCCTCTTGTAGCTACTTACTGA 58.399 43.478 23.84 13.04 37.64 3.41
154 155 5.205056 AGCCTCTTGTAGCTACTTACTGAT 58.795 41.667 23.84 6.80 37.64 2.90
155 156 5.659079 AGCCTCTTGTAGCTACTTACTGATT 59.341 40.000 23.84 2.30 37.64 2.57
156 157 6.155393 AGCCTCTTGTAGCTACTTACTGATTT 59.845 38.462 23.84 0.99 37.64 2.17
157 158 7.342284 AGCCTCTTGTAGCTACTTACTGATTTA 59.658 37.037 23.84 0.00 37.64 1.40
158 159 7.650104 GCCTCTTGTAGCTACTTACTGATTTAG 59.350 40.741 23.84 7.40 0.00 1.85
159 160 8.688151 CCTCTTGTAGCTACTTACTGATTTAGT 58.312 37.037 23.84 0.00 43.56 2.24
160 161 9.509855 CTCTTGTAGCTACTTACTGATTTAGTG 57.490 37.037 23.84 4.45 40.65 2.74
161 162 9.239551 TCTTGTAGCTACTTACTGATTTAGTGA 57.760 33.333 23.84 0.00 40.65 3.41
164 165 9.185680 TGTAGCTACTTACTGATTTAGTGATCA 57.814 33.333 23.84 0.00 40.65 2.92
165 166 9.453325 GTAGCTACTTACTGATTTAGTGATCAC 57.547 37.037 18.47 18.47 40.65 3.06
166 167 8.067751 AGCTACTTACTGATTTAGTGATCACA 57.932 34.615 27.02 10.87 40.65 3.58
167 168 7.976734 AGCTACTTACTGATTTAGTGATCACAC 59.023 37.037 27.02 12.82 46.24 3.82
176 177 3.669354 GTGATCACACGGAGATCCC 57.331 57.895 21.07 0.00 40.87 3.85
185 186 2.420890 GGAGATCCCGCAGAGCAG 59.579 66.667 0.00 0.00 31.44 4.24
186 187 2.420890 GAGATCCCGCAGAGCAGG 59.579 66.667 0.00 0.00 31.44 4.85
187 188 2.042537 AGATCCCGCAGAGCAGGA 60.043 61.111 0.00 0.00 39.60 3.86
188 189 2.107953 GATCCCGCAGAGCAGGAC 59.892 66.667 0.00 0.00 37.99 3.85
189 190 2.364842 ATCCCGCAGAGCAGGACT 60.365 61.111 0.00 0.00 37.99 3.85
190 191 1.075970 ATCCCGCAGAGCAGGACTA 60.076 57.895 0.00 0.00 37.99 2.59
191 192 1.112315 ATCCCGCAGAGCAGGACTAG 61.112 60.000 0.00 0.00 37.99 2.57
192 193 2.790791 CCCGCAGAGCAGGACTAGG 61.791 68.421 0.00 0.00 0.00 3.02
193 194 2.790791 CCGCAGAGCAGGACTAGGG 61.791 68.421 0.00 0.00 0.00 3.53
194 195 2.790791 CGCAGAGCAGGACTAGGGG 61.791 68.421 0.00 0.00 0.00 4.79
195 196 2.439104 GCAGAGCAGGACTAGGGGG 61.439 68.421 0.00 0.00 0.00 5.40
196 197 1.002274 CAGAGCAGGACTAGGGGGT 59.998 63.158 0.00 0.00 0.00 4.95
197 198 1.002274 AGAGCAGGACTAGGGGGTG 59.998 63.158 0.00 0.00 0.00 4.61
198 199 1.306226 GAGCAGGACTAGGGGGTGT 60.306 63.158 0.00 0.00 0.00 4.16
199 200 0.910088 GAGCAGGACTAGGGGGTGTT 60.910 60.000 0.00 0.00 0.00 3.32
200 201 0.416231 AGCAGGACTAGGGGGTGTTA 59.584 55.000 0.00 0.00 0.00 2.41
201 202 1.009675 AGCAGGACTAGGGGGTGTTAT 59.990 52.381 0.00 0.00 0.00 1.89
202 203 1.416772 GCAGGACTAGGGGGTGTTATC 59.583 57.143 0.00 0.00 0.00 1.75
203 204 2.960104 GCAGGACTAGGGGGTGTTATCT 60.960 54.545 0.00 0.00 0.00 1.98
204 205 2.966516 CAGGACTAGGGGGTGTTATCTC 59.033 54.545 0.00 0.00 0.00 2.75
205 206 2.090663 AGGACTAGGGGGTGTTATCTCC 60.091 54.545 0.00 0.00 0.00 3.71
206 207 2.090663 GGACTAGGGGGTGTTATCTCCT 60.091 54.545 0.00 0.00 0.00 3.69
207 208 3.141649 GGACTAGGGGGTGTTATCTCCTA 59.858 52.174 0.00 0.00 0.00 2.94
209 210 2.797285 AGGGGGTGTTATCTCCTAGG 57.203 55.000 0.82 0.82 0.00 3.02
210 211 2.233178 AGGGGGTGTTATCTCCTAGGA 58.767 52.381 11.98 11.98 0.00 2.94
211 212 2.180308 AGGGGGTGTTATCTCCTAGGAG 59.820 54.545 30.15 30.15 43.21 3.69
218 219 4.206418 TCTCCTAGGAGAGCCCCA 57.794 61.111 33.59 13.97 45.26 4.96
219 220 2.421317 TCTCCTAGGAGAGCCCCAA 58.579 57.895 33.59 13.24 45.26 4.12
220 221 0.716591 TCTCCTAGGAGAGCCCCAAA 59.283 55.000 33.59 12.50 45.26 3.28
221 222 0.833949 CTCCTAGGAGAGCCCCAAAC 59.166 60.000 31.97 0.00 44.53 2.93
222 223 0.620700 TCCTAGGAGAGCCCCAAACC 60.621 60.000 7.62 0.00 34.66 3.27
223 224 0.621862 CCTAGGAGAGCCCCAAACCT 60.622 60.000 1.05 0.00 34.66 3.50
224 225 0.543749 CTAGGAGAGCCCCAAACCTG 59.456 60.000 0.00 0.00 34.66 4.00
225 226 0.914417 TAGGAGAGCCCCAAACCTGG 60.914 60.000 0.00 0.00 43.10 4.45
236 237 1.743394 CCAAACCTGGGTAAGATTCGC 59.257 52.381 0.00 0.00 39.30 4.70
237 238 1.743394 CAAACCTGGGTAAGATTCGCC 59.257 52.381 0.00 0.00 0.00 5.54
238 239 0.107848 AACCTGGGTAAGATTCGCCG 60.108 55.000 0.00 0.00 0.00 6.46
239 240 1.227556 CCTGGGTAAGATTCGCCGG 60.228 63.158 0.00 0.00 0.00 6.13
240 241 1.887707 CTGGGTAAGATTCGCCGGC 60.888 63.158 19.07 19.07 0.00 6.13
241 242 2.965462 GGGTAAGATTCGCCGGCG 60.965 66.667 42.13 42.13 41.35 6.46
242 243 2.202837 GGTAAGATTCGCCGGCGT 60.203 61.111 44.16 29.95 40.74 5.68
243 244 2.522638 GGTAAGATTCGCCGGCGTG 61.523 63.158 44.16 22.01 40.74 5.34
244 245 2.888534 TAAGATTCGCCGGCGTGC 60.889 61.111 44.16 32.69 40.74 5.34
245 246 3.650907 TAAGATTCGCCGGCGTGCA 62.651 57.895 44.16 30.42 40.74 4.57
246 247 2.916502 TAAGATTCGCCGGCGTGCAT 62.917 55.000 44.16 33.24 40.74 3.96
247 248 4.596180 GATTCGCCGGCGTGCATG 62.596 66.667 44.16 19.59 40.74 4.06
252 253 4.166011 GCCGGCGTGCATGTCTTC 62.166 66.667 12.58 0.00 0.00 2.87
253 254 3.853330 CCGGCGTGCATGTCTTCG 61.853 66.667 9.20 7.41 0.00 3.79
254 255 4.505217 CGGCGTGCATGTCTTCGC 62.505 66.667 9.20 8.80 46.42 4.70
256 257 3.121030 GCGTGCATGTCTTCGCCT 61.121 61.111 7.93 0.00 42.33 5.52
257 258 2.680913 GCGTGCATGTCTTCGCCTT 61.681 57.895 7.93 0.00 42.33 4.35
258 259 1.358725 GCGTGCATGTCTTCGCCTTA 61.359 55.000 7.93 0.00 42.33 2.69
259 260 1.290203 CGTGCATGTCTTCGCCTTAT 58.710 50.000 0.00 0.00 0.00 1.73
260 261 1.258982 CGTGCATGTCTTCGCCTTATC 59.741 52.381 0.00 0.00 0.00 1.75
261 262 1.599542 GTGCATGTCTTCGCCTTATCC 59.400 52.381 0.00 0.00 0.00 2.59
262 263 1.486310 TGCATGTCTTCGCCTTATCCT 59.514 47.619 0.00 0.00 0.00 3.24
263 264 1.869767 GCATGTCTTCGCCTTATCCTG 59.130 52.381 0.00 0.00 0.00 3.86
264 265 2.743183 GCATGTCTTCGCCTTATCCTGT 60.743 50.000 0.00 0.00 0.00 4.00
265 266 3.535561 CATGTCTTCGCCTTATCCTGTT 58.464 45.455 0.00 0.00 0.00 3.16
266 267 3.247006 TGTCTTCGCCTTATCCTGTTC 57.753 47.619 0.00 0.00 0.00 3.18
267 268 2.093658 TGTCTTCGCCTTATCCTGTTCC 60.094 50.000 0.00 0.00 0.00 3.62
268 269 2.093658 GTCTTCGCCTTATCCTGTTCCA 60.094 50.000 0.00 0.00 0.00 3.53
269 270 2.168521 TCTTCGCCTTATCCTGTTCCAG 59.831 50.000 0.00 0.00 0.00 3.86
270 271 1.860641 TCGCCTTATCCTGTTCCAGA 58.139 50.000 0.00 0.00 32.44 3.86
271 272 1.480954 TCGCCTTATCCTGTTCCAGAC 59.519 52.381 0.00 0.00 32.44 3.51
272 273 1.207089 CGCCTTATCCTGTTCCAGACA 59.793 52.381 0.00 0.00 36.65 3.41
273 274 2.633488 GCCTTATCCTGTTCCAGACAC 58.367 52.381 0.00 0.00 33.82 3.67
274 275 2.681097 GCCTTATCCTGTTCCAGACACC 60.681 54.545 0.00 0.00 33.82 4.16
275 276 2.418746 CCTTATCCTGTTCCAGACACCG 60.419 54.545 0.00 0.00 33.82 4.94
276 277 1.191535 TATCCTGTTCCAGACACCGG 58.808 55.000 0.00 0.00 33.82 5.28
277 278 2.185310 ATCCTGTTCCAGACACCGGC 62.185 60.000 0.00 0.00 33.82 6.13
278 279 2.738521 CTGTTCCAGACACCGGCG 60.739 66.667 0.00 0.00 33.82 6.46
279 280 3.220999 CTGTTCCAGACACCGGCGA 62.221 63.158 9.30 0.00 33.82 5.54
280 281 2.264794 GTTCCAGACACCGGCGAT 59.735 61.111 9.30 0.00 0.00 4.58
281 282 2.100631 GTTCCAGACACCGGCGATG 61.101 63.158 9.30 2.86 0.00 3.84
282 283 2.579657 TTCCAGACACCGGCGATGT 61.580 57.895 6.60 6.60 0.00 3.06
283 284 2.501223 TTCCAGACACCGGCGATGTC 62.501 60.000 26.61 26.61 45.70 3.06
287 288 2.662150 GACACCGGCGATGTCTTAC 58.338 57.895 26.62 0.37 42.68 2.34
288 289 0.172803 GACACCGGCGATGTCTTACT 59.827 55.000 26.62 0.00 42.68 2.24
289 290 0.108804 ACACCGGCGATGTCTTACTG 60.109 55.000 9.30 0.00 0.00 2.74
290 291 0.806102 CACCGGCGATGTCTTACTGG 60.806 60.000 9.30 0.00 34.56 4.00
291 292 1.883084 CCGGCGATGTCTTACTGGC 60.883 63.158 9.30 0.00 0.00 4.85
292 293 1.141881 CGGCGATGTCTTACTGGCT 59.858 57.895 0.00 0.00 0.00 4.75
293 294 0.872021 CGGCGATGTCTTACTGGCTC 60.872 60.000 0.00 0.00 0.00 4.70
294 295 0.530870 GGCGATGTCTTACTGGCTCC 60.531 60.000 0.00 0.00 0.00 4.70
295 296 0.530870 GCGATGTCTTACTGGCTCCC 60.531 60.000 0.00 0.00 0.00 4.30
296 297 0.824109 CGATGTCTTACTGGCTCCCA 59.176 55.000 0.00 0.00 0.00 4.37
297 298 1.471676 CGATGTCTTACTGGCTCCCAC 60.472 57.143 0.00 0.00 0.00 4.61
298 299 1.834263 GATGTCTTACTGGCTCCCACT 59.166 52.381 0.00 0.00 0.00 4.00
299 300 2.615986 TGTCTTACTGGCTCCCACTA 57.384 50.000 0.00 0.00 0.00 2.74
300 301 3.116096 TGTCTTACTGGCTCCCACTAT 57.884 47.619 0.00 0.00 0.00 2.12
301 302 2.766263 TGTCTTACTGGCTCCCACTATG 59.234 50.000 0.00 0.00 0.00 2.23
302 303 3.031736 GTCTTACTGGCTCCCACTATGA 58.968 50.000 0.00 0.00 0.00 2.15
303 304 3.643792 GTCTTACTGGCTCCCACTATGAT 59.356 47.826 0.00 0.00 0.00 2.45
304 305 4.101741 GTCTTACTGGCTCCCACTATGATT 59.898 45.833 0.00 0.00 0.00 2.57
305 306 5.304614 GTCTTACTGGCTCCCACTATGATTA 59.695 44.000 0.00 0.00 0.00 1.75
306 307 5.540337 TCTTACTGGCTCCCACTATGATTAG 59.460 44.000 0.00 0.00 0.00 1.73
307 308 2.370189 ACTGGCTCCCACTATGATTAGC 59.630 50.000 0.00 0.00 0.00 3.09
308 309 2.481289 GGCTCCCACTATGATTAGCC 57.519 55.000 0.00 0.00 42.40 3.93
309 310 1.699634 GGCTCCCACTATGATTAGCCA 59.300 52.381 6.30 0.00 46.95 4.75
310 311 2.307098 GGCTCCCACTATGATTAGCCAT 59.693 50.000 6.30 0.00 46.95 4.40
311 312 3.604582 GCTCCCACTATGATTAGCCATC 58.395 50.000 0.00 0.00 0.00 3.51
312 313 3.620966 GCTCCCACTATGATTAGCCATCC 60.621 52.174 0.00 0.00 0.00 3.51
313 314 3.843027 CTCCCACTATGATTAGCCATCCT 59.157 47.826 0.00 0.00 0.00 3.24
314 315 4.242811 TCCCACTATGATTAGCCATCCTT 58.757 43.478 0.00 0.00 0.00 3.36
315 316 4.042062 TCCCACTATGATTAGCCATCCTTG 59.958 45.833 0.00 0.00 0.00 3.61
316 317 4.330250 CCACTATGATTAGCCATCCTTGG 58.670 47.826 0.00 0.00 46.66 3.61
317 318 4.330250 CACTATGATTAGCCATCCTTGGG 58.670 47.826 0.00 0.00 43.84 4.12
338 339 2.297701 CATATGTTGCACCTACCACCC 58.702 52.381 0.00 0.00 0.00 4.61
339 340 0.250793 TATGTTGCACCTACCACCCG 59.749 55.000 0.00 0.00 0.00 5.28
340 341 1.485294 ATGTTGCACCTACCACCCGA 61.485 55.000 0.00 0.00 0.00 5.14
341 342 1.670083 GTTGCACCTACCACCCGAC 60.670 63.158 0.00 0.00 0.00 4.79
342 343 2.141448 TTGCACCTACCACCCGACA 61.141 57.895 0.00 0.00 0.00 4.35
343 344 2.047560 GCACCTACCACCCGACAC 60.048 66.667 0.00 0.00 0.00 3.67
344 345 2.260434 CACCTACCACCCGACACG 59.740 66.667 0.00 0.00 0.00 4.49
345 346 3.688159 ACCTACCACCCGACACGC 61.688 66.667 0.00 0.00 0.00 5.34
346 347 4.789075 CCTACCACCCGACACGCG 62.789 72.222 3.53 3.53 40.47 6.01
380 381 1.079057 GGCTCGGAGAAGGTTGGAC 60.079 63.158 9.69 0.00 34.09 4.02
381 382 1.671742 GCTCGGAGAAGGTTGGACA 59.328 57.895 9.69 0.00 34.09 4.02
382 383 0.034896 GCTCGGAGAAGGTTGGACAA 59.965 55.000 9.69 0.00 34.09 3.18
385 386 3.211045 CTCGGAGAAGGTTGGACAAAAA 58.789 45.455 0.00 0.00 34.09 1.94
393 394 6.056884 AGAAGGTTGGACAAAAATGTACGTA 58.943 36.000 0.00 0.00 0.00 3.57
395 396 6.696441 AGGTTGGACAAAAATGTACGTAAA 57.304 33.333 0.00 0.00 0.00 2.01
396 397 7.098074 AGGTTGGACAAAAATGTACGTAAAA 57.902 32.000 0.00 0.00 0.00 1.52
397 398 6.974048 AGGTTGGACAAAAATGTACGTAAAAC 59.026 34.615 0.00 0.00 0.00 2.43
398 399 6.198778 GGTTGGACAAAAATGTACGTAAAACC 59.801 38.462 0.00 0.00 0.00 3.27
399 400 5.508872 TGGACAAAAATGTACGTAAAACCG 58.491 37.500 0.00 0.00 0.00 4.44
400 401 5.295292 TGGACAAAAATGTACGTAAAACCGA 59.705 36.000 0.00 0.00 0.00 4.69
401 402 6.183360 TGGACAAAAATGTACGTAAAACCGAA 60.183 34.615 0.00 0.00 0.00 4.30
402 403 6.357766 GGACAAAAATGTACGTAAAACCGAAG 59.642 38.462 0.00 0.00 0.00 3.79
403 404 7.014092 ACAAAAATGTACGTAAAACCGAAGA 57.986 32.000 0.00 0.00 0.00 2.87
404 405 7.470900 ACAAAAATGTACGTAAAACCGAAGAA 58.529 30.769 0.00 0.00 0.00 2.52
409 410 7.662604 ATGTACGTAAAACCGAAGAAGAAAT 57.337 32.000 0.00 0.00 0.00 2.17
454 574 3.868077 GCAGTATCAGGAGACACAACATC 59.132 47.826 0.00 0.00 0.00 3.06
459 579 4.527509 TCAGGAGACACAACATCTTCTC 57.472 45.455 0.00 0.00 28.73 2.87
498 622 5.395768 GCTTTTACTCAGCCTCTCTTATCCA 60.396 44.000 0.00 0.00 0.00 3.41
509 633 6.385467 AGCCTCTCTTATCCATAACAAGAAGT 59.615 38.462 0.00 0.00 0.00 3.01
558 684 1.200020 CTTACCGCAAAAGAAGGCTGG 59.800 52.381 0.00 0.00 0.00 4.85
569 695 0.687354 GAAGGCTGGGACTGTTCTCA 59.313 55.000 0.00 0.00 0.00 3.27
712 866 6.208599 CCTATCCAAGTTTTGACTAGGCAAAA 59.791 38.462 28.80 28.80 43.31 2.44
713 867 5.514274 TCCAAGTTTTGACTAGGCAAAAG 57.486 39.130 32.15 21.63 45.33 2.27
714 868 4.051237 CCAAGTTTTGACTAGGCAAAAGC 58.949 43.478 32.15 25.17 45.33 3.51
715 869 4.202151 CCAAGTTTTGACTAGGCAAAAGCT 60.202 41.667 32.15 26.61 45.33 3.74
716 870 5.009610 CCAAGTTTTGACTAGGCAAAAGCTA 59.990 40.000 32.15 12.53 45.33 3.32
717 871 5.948992 AGTTTTGACTAGGCAAAAGCTAG 57.051 39.130 32.15 0.00 45.33 3.42
718 872 4.216472 AGTTTTGACTAGGCAAAAGCTAGC 59.784 41.667 32.15 21.18 45.33 3.42
719 873 3.703001 TTGACTAGGCAAAAGCTAGCT 57.297 42.857 12.68 12.68 0.00 3.32
720 874 4.819105 TTGACTAGGCAAAAGCTAGCTA 57.181 40.909 19.70 0.00 0.00 3.32
721 875 4.124851 TGACTAGGCAAAAGCTAGCTAC 57.875 45.455 19.70 8.02 0.00 3.58
722 876 3.769844 TGACTAGGCAAAAGCTAGCTACT 59.230 43.478 19.70 13.35 0.00 2.57
723 877 4.954202 TGACTAGGCAAAAGCTAGCTACTA 59.046 41.667 19.70 13.74 0.00 1.82
724 878 5.163540 TGACTAGGCAAAAGCTAGCTACTAC 60.164 44.000 19.70 8.40 0.00 2.73
725 879 3.545366 AGGCAAAAGCTAGCTACTACC 57.455 47.619 19.70 17.10 0.00 3.18
726 880 2.170817 AGGCAAAAGCTAGCTACTACCC 59.829 50.000 19.70 14.49 0.00 3.69
727 881 2.170817 GGCAAAAGCTAGCTACTACCCT 59.829 50.000 19.70 0.00 0.00 4.34
728 882 3.387050 GGCAAAAGCTAGCTACTACCCTA 59.613 47.826 19.70 0.00 0.00 3.53
757 911 1.423845 CAAGATTACACCGCCGTGC 59.576 57.895 5.02 0.00 44.40 5.34
777 931 2.125673 AATCAACGACCCTCGCCG 60.126 61.111 0.00 0.00 45.12 6.46
778 932 4.814294 ATCAACGACCCTCGCCGC 62.814 66.667 0.00 0.00 45.12 6.53
866 1036 3.702045 CGGCCTCCTTCCCTCTATATAAG 59.298 52.174 0.00 0.00 0.00 1.73
897 1067 2.519013 GCCACCTCACCAGAAGAAAAT 58.481 47.619 0.00 0.00 0.00 1.82
924 1109 0.766288 CCATTCCTCCTCCCCTCCTC 60.766 65.000 0.00 0.00 0.00 3.71
952 1145 1.421646 CCCTCTCTCTCTCTCTCTCCC 59.578 61.905 0.00 0.00 0.00 4.30
995 1190 2.528127 TGCGTTCTTGGGGAGGGA 60.528 61.111 0.00 0.00 0.00 4.20
1008 1203 3.338250 AGGGAGGAAATGGCGGCA 61.338 61.111 16.34 16.34 0.00 5.69
1428 1626 0.685097 CCCCCGAATCACCATCGTAT 59.315 55.000 0.00 0.00 38.60 3.06
1438 1636 5.961396 ATCACCATCGTATCACCTACTAC 57.039 43.478 0.00 0.00 0.00 2.73
1439 1637 5.045012 TCACCATCGTATCACCTACTACT 57.955 43.478 0.00 0.00 0.00 2.57
1440 1638 6.178607 TCACCATCGTATCACCTACTACTA 57.821 41.667 0.00 0.00 0.00 1.82
1471 1669 1.002792 CTTCCGTGCGATCTCGTCATA 60.003 52.381 1.14 0.00 42.22 2.15
1489 1687 1.474332 TACCGTTTCTTGCCCGTCCT 61.474 55.000 0.00 0.00 0.00 3.85
1490 1688 2.325082 CCGTTTCTTGCCCGTCCTG 61.325 63.158 0.00 0.00 0.00 3.86
1600 1811 1.398390 GCTAGGTTTCTTGTGCCGATG 59.602 52.381 0.00 0.00 0.00 3.84
1815 2035 5.938125 GGTACTTGTTCTTTTGCTGGATCTA 59.062 40.000 0.00 0.00 0.00 1.98
1849 2073 0.792640 CCTCACTGACGTGCATCAAC 59.207 55.000 0.00 0.00 40.99 3.18
1889 2115 2.866762 GCTAATCTTAGGAGTGCCGTTG 59.133 50.000 0.00 0.00 39.96 4.10
1891 2117 2.386661 ATCTTAGGAGTGCCGTTGTG 57.613 50.000 0.00 0.00 39.96 3.33
1892 2118 0.320374 TCTTAGGAGTGCCGTTGTGG 59.680 55.000 0.00 0.00 39.96 4.17
1966 2194 6.018180 CCGGCCAAGTATGATACTTTAAGAAC 60.018 42.308 14.80 3.02 46.27 3.01
1970 2198 7.574607 CCAAGTATGATACTTTAAGAACCCCT 58.425 38.462 14.80 0.00 46.27 4.79
1971 2199 7.715686 CCAAGTATGATACTTTAAGAACCCCTC 59.284 40.741 14.80 0.00 46.27 4.30
2035 2326 7.379750 AGATCAGTTCTTGTCTTGGTTAGTAC 58.620 38.462 0.00 0.00 0.00 2.73
2036 2327 6.726490 TCAGTTCTTGTCTTGGTTAGTACT 57.274 37.500 0.00 0.00 0.00 2.73
2037 2328 7.120923 TCAGTTCTTGTCTTGGTTAGTACTT 57.879 36.000 0.00 0.00 0.00 2.24
2038 2329 6.984474 TCAGTTCTTGTCTTGGTTAGTACTTG 59.016 38.462 0.00 0.00 0.00 3.16
2039 2330 5.758784 AGTTCTTGTCTTGGTTAGTACTTGC 59.241 40.000 0.00 0.00 0.00 4.01
2040 2331 5.546621 TCTTGTCTTGGTTAGTACTTGCT 57.453 39.130 0.00 0.00 0.00 3.91
2041 2332 5.539048 TCTTGTCTTGGTTAGTACTTGCTC 58.461 41.667 0.00 0.00 0.00 4.26
2042 2333 4.267349 TGTCTTGGTTAGTACTTGCTCC 57.733 45.455 0.00 0.00 0.00 4.70
2043 2334 3.901844 TGTCTTGGTTAGTACTTGCTCCT 59.098 43.478 0.00 0.00 0.00 3.69
2044 2335 4.347000 TGTCTTGGTTAGTACTTGCTCCTT 59.653 41.667 0.00 0.00 0.00 3.36
2045 2336 5.541101 TGTCTTGGTTAGTACTTGCTCCTTA 59.459 40.000 0.00 0.00 0.00 2.69
2046 2337 6.212791 TGTCTTGGTTAGTACTTGCTCCTTAT 59.787 38.462 0.00 0.00 0.00 1.73
2047 2338 6.535508 GTCTTGGTTAGTACTTGCTCCTTATG 59.464 42.308 0.00 0.00 0.00 1.90
2048 2339 6.439375 TCTTGGTTAGTACTTGCTCCTTATGA 59.561 38.462 0.00 0.00 0.00 2.15
2049 2340 6.614694 TGGTTAGTACTTGCTCCTTATGAA 57.385 37.500 0.00 0.00 0.00 2.57
2050 2341 7.011499 TGGTTAGTACTTGCTCCTTATGAAA 57.989 36.000 0.00 0.00 0.00 2.69
2051 2342 7.455058 TGGTTAGTACTTGCTCCTTATGAAAA 58.545 34.615 0.00 0.00 0.00 2.29
2052 2343 7.940137 TGGTTAGTACTTGCTCCTTATGAAAAA 59.060 33.333 0.00 0.00 0.00 1.94
2053 2344 8.235226 GGTTAGTACTTGCTCCTTATGAAAAAC 58.765 37.037 0.00 0.00 0.00 2.43
2054 2345 8.780249 GTTAGTACTTGCTCCTTATGAAAAACA 58.220 33.333 0.00 0.00 0.00 2.83
2055 2346 9.515226 TTAGTACTTGCTCCTTATGAAAAACAT 57.485 29.630 0.00 0.00 42.39 2.71
2056 2347 8.409358 AGTACTTGCTCCTTATGAAAAACATT 57.591 30.769 0.00 0.00 40.07 2.71
2057 2348 8.860088 AGTACTTGCTCCTTATGAAAAACATTT 58.140 29.630 0.00 0.00 40.07 2.32
2060 2351 9.077885 ACTTGCTCCTTATGAAAAACATTTAGA 57.922 29.630 0.00 0.00 40.07 2.10
2061 2352 9.565213 CTTGCTCCTTATGAAAAACATTTAGAG 57.435 33.333 0.00 0.00 40.07 2.43
2062 2353 7.538575 TGCTCCTTATGAAAAACATTTAGAGC 58.461 34.615 1.31 1.31 44.14 4.09
2063 2354 7.538575 GCTCCTTATGAAAAACATTTAGAGCA 58.461 34.615 15.62 0.00 43.79 4.26
2076 2367 9.696917 AAACATTTAGAGCAAAACTTATGGAAG 57.303 29.630 0.00 0.00 38.76 3.46
2078 2369 8.515414 ACATTTAGAGCAAAACTTATGGAAGAC 58.485 33.333 0.00 0.00 36.45 3.01
2147 2498 3.489355 AGAATTGTGCATGTCAGGTGAA 58.511 40.909 0.00 0.00 0.00 3.18
2151 2502 3.483808 TGTGCATGTCAGGTGAACTTA 57.516 42.857 0.00 0.00 0.00 2.24
2211 2777 0.807667 GTCTGGTGGCGCTAGATGTG 60.808 60.000 17.30 0.00 37.06 3.21
2239 2807 8.487176 CAACTGTTCTATTGTTAAATTTGTGCC 58.513 33.333 0.00 0.00 0.00 5.01
2343 2917 8.066595 TGTTGTTTTGTTGTGAAATTTTCTGTG 58.933 29.630 10.33 0.00 0.00 3.66
2358 2932 8.830201 AATTTTCTGTGCTGCAATGTTTTATA 57.170 26.923 2.77 0.00 0.00 0.98
2360 2934 8.654230 TTTTCTGTGCTGCAATGTTTTATAAA 57.346 26.923 2.77 0.00 0.00 1.40
2647 3223 0.179000 GCATCAACTCGGTGGAGGAT 59.821 55.000 0.00 0.00 44.93 3.24
2749 3325 6.327279 ACCAAGGTATGCTTTACAAGTTTC 57.673 37.500 0.00 0.00 0.00 2.78
2810 3386 8.046708 TGCTGGTTGTACTCTATATGTCAAATT 58.953 33.333 0.00 0.00 0.00 1.82
3074 3667 2.242043 AGTAAGCTTGTGCCTGCAAAT 58.758 42.857 9.86 0.00 40.80 2.32
3075 3668 2.029649 AGTAAGCTTGTGCCTGCAAATG 60.030 45.455 9.86 0.00 40.80 2.32
3096 3689 3.117926 TGCCTCCTTTAGCATCATTAGCA 60.118 43.478 0.00 0.00 33.08 3.49
3097 3690 4.077822 GCCTCCTTTAGCATCATTAGCAT 58.922 43.478 0.00 0.00 0.00 3.79
3167 3775 6.064060 GGTGGTTGATCAATTCCATATCTGA 58.936 40.000 17.97 0.00 32.45 3.27
3185 3793 3.018856 CTGATGGTTGCTGCAGGATAAA 58.981 45.455 17.12 0.96 0.00 1.40
3399 4009 1.123928 GGTGTACTCCTCCCAGGATG 58.876 60.000 6.72 0.00 44.81 3.51
3428 4038 4.377021 CCTTTTTGTTTGCTCCCCTTTAC 58.623 43.478 0.00 0.00 0.00 2.01
3457 4067 7.047891 AGGGTTTTTGTTTTGGAATTCTTCTC 58.952 34.615 5.23 0.00 0.00 2.87
3581 4192 5.221621 CCAACTGTATTGGGAATTTGTGGTT 60.222 40.000 0.00 0.00 35.96 3.67
3614 4226 6.149129 AGGTGGTTTCTGTTCTCAATTTTC 57.851 37.500 0.00 0.00 0.00 2.29
3620 4232 6.414987 GGTTTCTGTTCTCAATTTTCGACAAG 59.585 38.462 0.00 0.00 0.00 3.16
3661 4273 4.089923 GCTGATATTTGAACGTGCCAAAAC 59.910 41.667 16.81 12.61 37.11 2.43
3667 4279 0.920664 GAACGTGCCAAAACTGTTGC 59.079 50.000 0.00 0.00 0.00 4.17
3690 4302 2.588027 GCTCCTGGCAAGTACTACTC 57.412 55.000 0.00 0.00 41.35 2.59
3691 4303 1.137282 GCTCCTGGCAAGTACTACTCC 59.863 57.143 0.00 0.00 41.35 3.85
3692 4304 1.757699 CTCCTGGCAAGTACTACTCCC 59.242 57.143 0.00 0.00 0.00 4.30
3693 4305 1.361543 TCCTGGCAAGTACTACTCCCT 59.638 52.381 0.00 0.00 0.00 4.20
3694 4306 2.188817 CCTGGCAAGTACTACTCCCTT 58.811 52.381 0.00 0.00 0.00 3.95
3695 4307 2.093447 CCTGGCAAGTACTACTCCCTTG 60.093 54.545 0.00 0.00 38.83 3.61
3696 4308 1.906574 TGGCAAGTACTACTCCCTTGG 59.093 52.381 0.00 0.00 36.84 3.61
3697 4309 1.907255 GGCAAGTACTACTCCCTTGGT 59.093 52.381 0.00 0.00 36.84 3.67
3698 4310 2.093606 GGCAAGTACTACTCCCTTGGTC 60.094 54.545 0.00 0.00 36.84 4.02
3699 4311 2.832733 GCAAGTACTACTCCCTTGGTCT 59.167 50.000 0.00 0.00 36.84 3.85
3700 4312 3.119065 GCAAGTACTACTCCCTTGGTCTC 60.119 52.174 0.00 0.00 36.84 3.36
3701 4313 4.087182 CAAGTACTACTCCCTTGGTCTCA 58.913 47.826 0.00 0.00 33.57 3.27
3702 4314 4.399483 AGTACTACTCCCTTGGTCTCAA 57.601 45.455 0.00 0.00 0.00 3.02
3703 4315 4.748701 AGTACTACTCCCTTGGTCTCAAA 58.251 43.478 0.00 0.00 31.77 2.69
3704 4316 5.152934 AGTACTACTCCCTTGGTCTCAAAA 58.847 41.667 0.00 0.00 31.77 2.44
3705 4317 5.785940 AGTACTACTCCCTTGGTCTCAAAAT 59.214 40.000 0.00 0.00 31.77 1.82
3706 4318 6.958192 AGTACTACTCCCTTGGTCTCAAAATA 59.042 38.462 0.00 0.00 31.77 1.40
3707 4319 6.697641 ACTACTCCCTTGGTCTCAAAATAA 57.302 37.500 0.00 0.00 31.77 1.40
3708 4320 6.712276 ACTACTCCCTTGGTCTCAAAATAAG 58.288 40.000 0.00 0.00 31.77 1.73
3709 4321 5.584551 ACTCCCTTGGTCTCAAAATAAGT 57.415 39.130 0.00 0.00 31.77 2.24
3710 4322 5.316987 ACTCCCTTGGTCTCAAAATAAGTG 58.683 41.667 0.00 0.00 31.77 3.16
3711 4323 5.163088 ACTCCCTTGGTCTCAAAATAAGTGT 60.163 40.000 0.00 0.00 31.77 3.55
3712 4324 5.313712 TCCCTTGGTCTCAAAATAAGTGTC 58.686 41.667 0.00 0.00 31.77 3.67
3713 4325 5.073144 TCCCTTGGTCTCAAAATAAGTGTCT 59.927 40.000 0.00 0.00 31.77 3.41
3714 4326 5.770162 CCCTTGGTCTCAAAATAAGTGTCTT 59.230 40.000 0.00 0.00 31.77 3.01
3715 4327 6.294176 CCCTTGGTCTCAAAATAAGTGTCTTG 60.294 42.308 0.00 0.00 31.77 3.02
3716 4328 6.486657 CCTTGGTCTCAAAATAAGTGTCTTGA 59.513 38.462 0.00 0.00 31.77 3.02
3717 4329 7.308229 CCTTGGTCTCAAAATAAGTGTCTTGAG 60.308 40.741 4.63 4.63 43.97 3.02
3718 4330 5.470098 TGGTCTCAAAATAAGTGTCTTGAGC 59.530 40.000 5.91 2.51 42.87 4.26
3719 4331 5.703130 GGTCTCAAAATAAGTGTCTTGAGCT 59.297 40.000 5.91 0.00 42.87 4.09
3720 4332 6.205658 GGTCTCAAAATAAGTGTCTTGAGCTT 59.794 38.462 5.91 0.00 42.87 3.74
3721 4333 7.387948 GGTCTCAAAATAAGTGTCTTGAGCTTA 59.612 37.037 5.91 0.00 42.87 3.09
3722 4334 8.439286 GTCTCAAAATAAGTGTCTTGAGCTTAG 58.561 37.037 5.91 0.00 42.87 2.18
3723 4335 8.150945 TCTCAAAATAAGTGTCTTGAGCTTAGT 58.849 33.333 5.91 0.00 42.87 2.24
3724 4336 9.424319 CTCAAAATAAGTGTCTTGAGCTTAGTA 57.576 33.333 0.00 0.00 38.63 1.82
3725 4337 9.944376 TCAAAATAAGTGTCTTGAGCTTAGTAT 57.056 29.630 0.00 0.00 0.00 2.12
3733 4345 9.726438 AGTGTCTTGAGCTTAGTATAAATTTGT 57.274 29.630 0.00 0.00 0.00 2.83
3758 4370 7.148355 ACTAGAGCTAGTACAAAGTTGAGAC 57.852 40.000 8.35 0.00 43.98 3.36
3759 4371 6.715718 ACTAGAGCTAGTACAAAGTTGAGACA 59.284 38.462 8.35 0.00 43.98 3.41
3760 4372 5.774630 AGAGCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 0.00 3.67
3761 4373 5.536916 AGAGCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 0.00 3.55
3762 4374 5.774630 AGCTAGTACAAAGTTGAGACACTC 58.225 41.667 0.00 0.00 0.00 3.51
3763 4375 5.302059 AGCTAGTACAAAGTTGAGACACTCA 59.698 40.000 0.00 0.00 38.87 3.41
3764 4376 6.015010 AGCTAGTACAAAGTTGAGACACTCAT 60.015 38.462 2.30 0.00 40.39 2.90
3765 4377 6.647067 GCTAGTACAAAGTTGAGACACTCATT 59.353 38.462 2.30 0.00 40.39 2.57
3766 4378 7.171678 GCTAGTACAAAGTTGAGACACTCATTT 59.828 37.037 2.30 0.00 40.39 2.32
3767 4379 7.865706 AGTACAAAGTTGAGACACTCATTTT 57.134 32.000 2.30 4.67 40.39 1.82
3768 4380 7.697691 AGTACAAAGTTGAGACACTCATTTTG 58.302 34.615 22.42 22.42 43.24 2.44
3769 4381 5.894807 ACAAAGTTGAGACACTCATTTTGG 58.105 37.500 24.85 14.82 42.67 3.28
3770 4382 5.163519 ACAAAGTTGAGACACTCATTTTGGG 60.164 40.000 24.85 13.36 42.67 4.12
3771 4383 4.437682 AGTTGAGACACTCATTTTGGGA 57.562 40.909 2.30 0.00 40.39 4.37
3772 4384 4.137543 AGTTGAGACACTCATTTTGGGAC 58.862 43.478 2.30 0.00 40.39 4.46
3773 4385 2.766313 TGAGACACTCATTTTGGGACG 58.234 47.619 0.00 0.00 35.39 4.79
3774 4386 2.076863 GAGACACTCATTTTGGGACGG 58.923 52.381 0.00 0.00 0.00 4.79
3775 4387 1.697432 AGACACTCATTTTGGGACGGA 59.303 47.619 0.00 0.00 0.00 4.69
3776 4388 2.076863 GACACTCATTTTGGGACGGAG 58.923 52.381 0.00 0.00 0.00 4.63
3777 4389 1.271379 ACACTCATTTTGGGACGGAGG 60.271 52.381 0.00 0.00 0.00 4.30
3778 4390 0.328258 ACTCATTTTGGGACGGAGGG 59.672 55.000 0.00 0.00 0.00 4.30
3779 4391 0.618458 CTCATTTTGGGACGGAGGGA 59.382 55.000 0.00 0.00 0.00 4.20
3780 4392 0.618458 TCATTTTGGGACGGAGGGAG 59.382 55.000 0.00 0.00 0.00 4.30
3781 4393 0.328258 CATTTTGGGACGGAGGGAGT 59.672 55.000 0.00 0.00 0.00 3.85
3782 4394 1.557832 CATTTTGGGACGGAGGGAGTA 59.442 52.381 0.00 0.00 0.00 2.59
3783 4395 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
3795 4407 5.010820 ACGGAGGGAGTACATATTTAAGCTC 59.989 44.000 0.00 0.00 0.00 4.09
3820 4432 8.212995 TCTGGCAGATGATATTTGAATCAACTA 58.787 33.333 14.43 0.00 37.01 2.24
3838 4450 9.690913 AATCAACTATTCTGAAATCTTGATCCA 57.309 29.630 14.82 0.00 34.42 3.41
3876 4488 2.098770 GCTGCATCTCTGTTCCATTTCC 59.901 50.000 0.00 0.00 0.00 3.13
3899 4511 2.951726 GCTTCTTTTGGATGCTGAACC 58.048 47.619 0.00 0.00 40.56 3.62
3940 4614 3.732721 GTGCTGTGATTGCTTTCTTGTTC 59.267 43.478 0.00 0.00 0.00 3.18
3943 4617 3.968649 TGTGATTGCTTTCTTGTTCAGC 58.031 40.909 0.00 0.00 0.00 4.26
3954 4628 1.802960 CTTGTTCAGCTGACGCAGATT 59.197 47.619 18.03 0.00 39.10 2.40
3986 4660 7.937394 AGTTAGAAGTACTTTGCACTTTACCAT 59.063 33.333 10.02 0.00 36.38 3.55
3989 4663 8.685838 AGAAGTACTTTGCACTTTACCATTTA 57.314 30.769 10.02 0.00 36.38 1.40
4000 4674 9.632807 TGCACTTTACCATTTATTTATGTGAAC 57.367 29.630 0.00 0.00 0.00 3.18
4067 4741 1.452108 GCACGCTCCCAAGGCTATT 60.452 57.895 0.00 0.00 0.00 1.73
4068 4742 0.179056 GCACGCTCCCAAGGCTATTA 60.179 55.000 0.00 0.00 0.00 0.98
4081 4755 5.220931 CCAAGGCTATTAGCTGCTTTAACTG 60.221 44.000 7.79 0.97 41.99 3.16
4082 4756 5.359194 AGGCTATTAGCTGCTTTAACTGA 57.641 39.130 7.79 0.00 41.99 3.41
4105 4779 7.546358 TGAACATTTTCAGACATGTGTTTCTT 58.454 30.769 1.15 0.00 36.79 2.52
4106 4780 7.701924 TGAACATTTTCAGACATGTGTTTCTTC 59.298 33.333 1.15 0.00 36.79 2.87
4107 4781 7.338800 ACATTTTCAGACATGTGTTTCTTCT 57.661 32.000 1.15 0.00 32.19 2.85
4109 4783 8.902806 ACATTTTCAGACATGTGTTTCTTCTAA 58.097 29.630 1.15 0.00 32.19 2.10
4110 4784 9.173939 CATTTTCAGACATGTGTTTCTTCTAAC 57.826 33.333 1.15 0.00 0.00 2.34
4111 4785 8.506168 TTTTCAGACATGTGTTTCTTCTAACT 57.494 30.769 1.15 0.00 0.00 2.24
4112 4786 9.607988 TTTTCAGACATGTGTTTCTTCTAACTA 57.392 29.630 1.15 0.00 0.00 2.24
4192 4895 4.133078 CTCTTCCAGGTATTGATTCCAGC 58.867 47.826 0.00 0.00 0.00 4.85
4193 4896 3.782523 TCTTCCAGGTATTGATTCCAGCT 59.217 43.478 0.00 0.00 0.00 4.24
4194 4897 3.845781 TCCAGGTATTGATTCCAGCTC 57.154 47.619 0.00 0.00 0.00 4.09
4195 4898 2.439507 TCCAGGTATTGATTCCAGCTCC 59.560 50.000 0.00 0.00 0.00 4.70
4196 4899 2.173356 CCAGGTATTGATTCCAGCTCCA 59.827 50.000 0.00 0.00 0.00 3.86
4197 4900 3.474600 CAGGTATTGATTCCAGCTCCAG 58.525 50.000 0.00 0.00 0.00 3.86
4246 4949 4.681942 AGTAAACATTCGATCGATGCTAGC 59.318 41.667 20.18 8.10 0.00 3.42
4251 4954 3.915437 TTCGATCGATGCTAGCATGTA 57.085 42.857 34.16 21.12 36.70 2.29
4306 5011 9.844257 ACCAAAATTTATCACCAAAAGAAATCA 57.156 25.926 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.848694 GGGGGTTTATATAGGCCTACCC 59.151 54.545 25.63 25.63 43.59 3.69
31 32 2.731572 AGAGATCAACCCTTTGCATGG 58.268 47.619 0.00 0.00 32.17 3.66
32 33 5.188434 TCTAAGAGATCAACCCTTTGCATG 58.812 41.667 0.00 0.00 32.17 4.06
33 34 5.190528 TCTCTAAGAGATCAACCCTTTGCAT 59.809 40.000 0.00 0.00 33.35 3.96
34 35 4.532126 TCTCTAAGAGATCAACCCTTTGCA 59.468 41.667 0.00 0.00 33.35 4.08
35 36 5.091261 TCTCTAAGAGATCAACCCTTTGC 57.909 43.478 0.00 0.00 33.35 3.68
36 37 6.936900 TGTTTCTCTAAGAGATCAACCCTTTG 59.063 38.462 0.00 0.00 38.56 2.77
37 38 6.937465 GTGTTTCTCTAAGAGATCAACCCTTT 59.063 38.462 0.00 0.00 38.56 3.11
38 39 6.043243 TGTGTTTCTCTAAGAGATCAACCCTT 59.957 38.462 0.00 0.00 38.56 3.95
39 40 5.544176 TGTGTTTCTCTAAGAGATCAACCCT 59.456 40.000 0.00 0.00 38.56 4.34
40 41 5.639931 GTGTGTTTCTCTAAGAGATCAACCC 59.360 44.000 0.00 0.00 38.56 4.11
41 42 6.146347 GTGTGTGTTTCTCTAAGAGATCAACC 59.854 42.308 0.00 0.00 38.56 3.77
42 43 6.701841 TGTGTGTGTTTCTCTAAGAGATCAAC 59.298 38.462 0.00 0.00 38.56 3.18
43 44 6.701841 GTGTGTGTGTTTCTCTAAGAGATCAA 59.298 38.462 0.00 0.00 38.56 2.57
44 45 6.216569 GTGTGTGTGTTTCTCTAAGAGATCA 58.783 40.000 0.00 0.00 38.56 2.92
45 46 5.635700 GGTGTGTGTGTTTCTCTAAGAGATC 59.364 44.000 0.00 0.00 38.56 2.75
46 47 5.070446 TGGTGTGTGTGTTTCTCTAAGAGAT 59.930 40.000 0.00 0.00 38.56 2.75
47 48 4.404394 TGGTGTGTGTGTTTCTCTAAGAGA 59.596 41.667 0.00 0.00 36.86 3.10
48 49 4.508124 GTGGTGTGTGTGTTTCTCTAAGAG 59.492 45.833 0.00 0.00 0.00 2.85
49 50 4.081365 TGTGGTGTGTGTGTTTCTCTAAGA 60.081 41.667 0.00 0.00 0.00 2.10
50 51 4.188462 TGTGGTGTGTGTGTTTCTCTAAG 58.812 43.478 0.00 0.00 0.00 2.18
51 52 4.209307 TGTGGTGTGTGTGTTTCTCTAA 57.791 40.909 0.00 0.00 0.00 2.10
52 53 3.897141 TGTGGTGTGTGTGTTTCTCTA 57.103 42.857 0.00 0.00 0.00 2.43
53 54 2.779755 TGTGGTGTGTGTGTTTCTCT 57.220 45.000 0.00 0.00 0.00 3.10
54 55 4.377021 TCTATGTGGTGTGTGTGTTTCTC 58.623 43.478 0.00 0.00 0.00 2.87
55 56 4.100963 TCTCTATGTGGTGTGTGTGTTTCT 59.899 41.667 0.00 0.00 0.00 2.52
56 57 4.377021 TCTCTATGTGGTGTGTGTGTTTC 58.623 43.478 0.00 0.00 0.00 2.78
57 58 4.100963 TCTCTCTATGTGGTGTGTGTGTTT 59.899 41.667 0.00 0.00 0.00 2.83
58 59 3.641436 TCTCTCTATGTGGTGTGTGTGTT 59.359 43.478 0.00 0.00 0.00 3.32
59 60 3.230976 TCTCTCTATGTGGTGTGTGTGT 58.769 45.455 0.00 0.00 0.00 3.72
60 61 3.942130 TCTCTCTATGTGGTGTGTGTG 57.058 47.619 0.00 0.00 0.00 3.82
61 62 4.152647 TCTTCTCTCTATGTGGTGTGTGT 58.847 43.478 0.00 0.00 0.00 3.72
62 63 4.381398 CCTCTTCTCTCTATGTGGTGTGTG 60.381 50.000 0.00 0.00 0.00 3.82
63 64 3.766591 CCTCTTCTCTCTATGTGGTGTGT 59.233 47.826 0.00 0.00 0.00 3.72
64 65 4.019858 TCCTCTTCTCTCTATGTGGTGTG 58.980 47.826 0.00 0.00 0.00 3.82
65 66 4.017958 TCTCCTCTTCTCTCTATGTGGTGT 60.018 45.833 0.00 0.00 0.00 4.16
66 67 4.531854 TCTCCTCTTCTCTCTATGTGGTG 58.468 47.826 0.00 0.00 0.00 4.17
67 68 4.792068 CTCTCCTCTTCTCTCTATGTGGT 58.208 47.826 0.00 0.00 0.00 4.16
68 69 3.569701 GCTCTCCTCTTCTCTCTATGTGG 59.430 52.174 0.00 0.00 0.00 4.17
69 70 4.464008 AGCTCTCCTCTTCTCTCTATGTG 58.536 47.826 0.00 0.00 0.00 3.21
70 71 4.796110 AGCTCTCCTCTTCTCTCTATGT 57.204 45.455 0.00 0.00 0.00 2.29
71 72 4.697352 GCTAGCTCTCCTCTTCTCTCTATG 59.303 50.000 7.70 0.00 0.00 2.23
72 73 4.263506 GGCTAGCTCTCCTCTTCTCTCTAT 60.264 50.000 15.72 0.00 0.00 1.98
73 74 3.072476 GGCTAGCTCTCCTCTTCTCTCTA 59.928 52.174 15.72 0.00 0.00 2.43
74 75 2.158608 GGCTAGCTCTCCTCTTCTCTCT 60.159 54.545 15.72 0.00 0.00 3.10
75 76 2.158608 AGGCTAGCTCTCCTCTTCTCTC 60.159 54.545 15.72 0.00 0.00 3.20
76 77 1.852965 AGGCTAGCTCTCCTCTTCTCT 59.147 52.381 15.72 0.00 0.00 3.10
77 78 2.362077 CAAGGCTAGCTCTCCTCTTCTC 59.638 54.545 15.72 0.00 0.00 2.87
78 79 2.387757 CAAGGCTAGCTCTCCTCTTCT 58.612 52.381 15.72 0.00 0.00 2.85
79 80 1.202521 GCAAGGCTAGCTCTCCTCTTC 60.203 57.143 15.72 0.00 0.00 2.87
80 81 0.829990 GCAAGGCTAGCTCTCCTCTT 59.170 55.000 15.72 5.24 0.00 2.85
81 82 1.048160 GGCAAGGCTAGCTCTCCTCT 61.048 60.000 15.72 0.00 0.00 3.69
82 83 1.445518 GGCAAGGCTAGCTCTCCTC 59.554 63.158 15.72 0.00 0.00 3.71
83 84 2.069430 GGGCAAGGCTAGCTCTCCT 61.069 63.158 15.72 0.00 0.00 3.69
84 85 1.631071 AAGGGCAAGGCTAGCTCTCC 61.631 60.000 15.72 10.54 43.32 3.71
85 86 0.179059 GAAGGGCAAGGCTAGCTCTC 60.179 60.000 15.72 0.00 43.32 3.20
86 87 0.620121 AGAAGGGCAAGGCTAGCTCT 60.620 55.000 15.72 7.30 46.87 4.09
87 88 0.254462 AAGAAGGGCAAGGCTAGCTC 59.746 55.000 15.72 4.82 0.00 4.09
88 89 0.254462 GAAGAAGGGCAAGGCTAGCT 59.746 55.000 15.72 0.00 0.00 3.32
89 90 0.254462 AGAAGAAGGGCAAGGCTAGC 59.746 55.000 6.04 6.04 0.00 3.42
90 91 2.637947 GAAGAAGAAGGGCAAGGCTAG 58.362 52.381 0.00 0.00 0.00 3.42
91 92 1.282157 GGAAGAAGAAGGGCAAGGCTA 59.718 52.381 0.00 0.00 0.00 3.93
92 93 0.038890 GGAAGAAGAAGGGCAAGGCT 59.961 55.000 0.00 0.00 0.00 4.58
93 94 0.038890 AGGAAGAAGAAGGGCAAGGC 59.961 55.000 0.00 0.00 0.00 4.35
94 95 2.593925 AAGGAAGAAGAAGGGCAAGG 57.406 50.000 0.00 0.00 0.00 3.61
95 96 3.441922 GCTAAAGGAAGAAGAAGGGCAAG 59.558 47.826 0.00 0.00 0.00 4.01
96 97 3.181434 TGCTAAAGGAAGAAGAAGGGCAA 60.181 43.478 0.00 0.00 0.00 4.52
97 98 2.375174 TGCTAAAGGAAGAAGAAGGGCA 59.625 45.455 0.00 0.00 0.00 5.36
98 99 3.073274 TGCTAAAGGAAGAAGAAGGGC 57.927 47.619 0.00 0.00 0.00 5.19
99 100 4.827284 TGTTTGCTAAAGGAAGAAGAAGGG 59.173 41.667 0.00 0.00 0.00 3.95
100 101 5.563671 GCTGTTTGCTAAAGGAAGAAGAAGG 60.564 44.000 0.00 0.00 38.95 3.46
101 102 5.456265 GCTGTTTGCTAAAGGAAGAAGAAG 58.544 41.667 0.00 0.00 38.95 2.85
102 103 5.438761 GCTGTTTGCTAAAGGAAGAAGAA 57.561 39.130 0.00 0.00 38.95 2.52
124 125 1.830477 AGCTACAAGAGGCTCCTTGAG 59.170 52.381 24.04 18.57 44.66 3.02
125 126 1.944177 AGCTACAAGAGGCTCCTTGA 58.056 50.000 24.04 12.44 44.66 3.02
126 127 2.763448 AGTAGCTACAAGAGGCTCCTTG 59.237 50.000 25.28 16.28 46.61 3.61
127 128 3.108847 AGTAGCTACAAGAGGCTCCTT 57.891 47.619 25.28 2.04 39.65 3.36
128 129 2.838637 AGTAGCTACAAGAGGCTCCT 57.161 50.000 25.28 2.25 39.65 3.69
129 130 3.955551 AGTAAGTAGCTACAAGAGGCTCC 59.044 47.826 25.28 3.28 39.65 4.70
130 131 4.641094 TCAGTAAGTAGCTACAAGAGGCTC 59.359 45.833 25.28 6.34 39.65 4.70
131 132 4.601084 TCAGTAAGTAGCTACAAGAGGCT 58.399 43.478 25.28 11.13 41.92 4.58
132 133 4.985538 TCAGTAAGTAGCTACAAGAGGC 57.014 45.455 25.28 9.20 0.00 4.70
133 134 8.688151 ACTAAATCAGTAAGTAGCTACAAGAGG 58.312 37.037 25.28 11.76 34.98 3.69
134 135 9.509855 CACTAAATCAGTAAGTAGCTACAAGAG 57.490 37.037 25.28 11.07 34.98 2.85
135 136 9.239551 TCACTAAATCAGTAAGTAGCTACAAGA 57.760 33.333 25.28 14.60 34.98 3.02
138 139 9.185680 TGATCACTAAATCAGTAAGTAGCTACA 57.814 33.333 25.28 3.04 34.98 2.74
139 140 9.453325 GTGATCACTAAATCAGTAAGTAGCTAC 57.547 37.037 18.83 16.43 36.36 3.58
140 141 9.185680 TGTGATCACTAAATCAGTAAGTAGCTA 57.814 33.333 25.55 0.00 36.36 3.32
141 142 7.976734 GTGTGATCACTAAATCAGTAAGTAGCT 59.023 37.037 25.55 0.00 40.98 3.32
142 143 7.043986 CGTGTGATCACTAAATCAGTAAGTAGC 60.044 40.741 25.55 0.00 41.89 3.58
143 144 7.432545 CCGTGTGATCACTAAATCAGTAAGTAG 59.567 40.741 25.55 0.00 41.89 2.57
144 145 7.121611 TCCGTGTGATCACTAAATCAGTAAGTA 59.878 37.037 25.55 0.00 41.89 2.24
145 146 6.071560 TCCGTGTGATCACTAAATCAGTAAGT 60.072 38.462 25.55 0.00 41.89 2.24
146 147 6.330278 TCCGTGTGATCACTAAATCAGTAAG 58.670 40.000 25.55 5.36 41.89 2.34
147 148 6.152154 TCTCCGTGTGATCACTAAATCAGTAA 59.848 38.462 25.55 0.00 41.89 2.24
148 149 5.650703 TCTCCGTGTGATCACTAAATCAGTA 59.349 40.000 25.55 0.00 41.89 2.74
149 150 4.462834 TCTCCGTGTGATCACTAAATCAGT 59.537 41.667 25.55 0.00 41.89 3.41
150 151 4.998788 TCTCCGTGTGATCACTAAATCAG 58.001 43.478 25.55 13.68 41.89 2.90
151 152 5.451937 GGATCTCCGTGTGATCACTAAATCA 60.452 44.000 25.55 7.37 41.35 2.57
152 153 4.985409 GGATCTCCGTGTGATCACTAAATC 59.015 45.833 25.55 17.34 41.35 2.17
153 154 4.202264 GGGATCTCCGTGTGATCACTAAAT 60.202 45.833 25.55 10.94 40.24 1.40
154 155 3.132289 GGGATCTCCGTGTGATCACTAAA 59.868 47.826 25.55 3.73 40.24 1.85
155 156 2.693591 GGGATCTCCGTGTGATCACTAA 59.306 50.000 25.55 4.51 40.24 2.24
156 157 2.307768 GGGATCTCCGTGTGATCACTA 58.692 52.381 25.55 10.28 40.24 2.74
157 158 1.115467 GGGATCTCCGTGTGATCACT 58.885 55.000 25.55 4.26 40.24 3.41
158 159 3.669354 GGGATCTCCGTGTGATCAC 57.331 57.895 19.27 19.27 41.35 3.06
168 169 2.420890 CTGCTCTGCGGGATCTCC 59.579 66.667 0.00 0.00 0.00 3.71
175 176 2.790791 CCCTAGTCCTGCTCTGCGG 61.791 68.421 0.00 0.00 34.23 5.69
176 177 2.790791 CCCCTAGTCCTGCTCTGCG 61.791 68.421 0.00 0.00 0.00 5.18
177 178 2.439104 CCCCCTAGTCCTGCTCTGC 61.439 68.421 0.00 0.00 0.00 4.26
178 179 1.002274 ACCCCCTAGTCCTGCTCTG 59.998 63.158 0.00 0.00 0.00 3.35
179 180 1.002274 CACCCCCTAGTCCTGCTCT 59.998 63.158 0.00 0.00 0.00 4.09
180 181 0.910088 AACACCCCCTAGTCCTGCTC 60.910 60.000 0.00 0.00 0.00 4.26
181 182 0.416231 TAACACCCCCTAGTCCTGCT 59.584 55.000 0.00 0.00 0.00 4.24
182 183 1.416772 GATAACACCCCCTAGTCCTGC 59.583 57.143 0.00 0.00 0.00 4.85
183 184 2.966516 GAGATAACACCCCCTAGTCCTG 59.033 54.545 0.00 0.00 0.00 3.86
184 185 2.090663 GGAGATAACACCCCCTAGTCCT 60.091 54.545 0.00 0.00 0.00 3.85
185 186 2.090663 AGGAGATAACACCCCCTAGTCC 60.091 54.545 0.00 0.00 0.00 3.85
186 187 3.331718 AGGAGATAACACCCCCTAGTC 57.668 52.381 0.00 0.00 0.00 2.59
187 188 3.142407 CCTAGGAGATAACACCCCCTAGT 59.858 52.174 1.05 0.00 42.93 2.57
188 189 3.401683 TCCTAGGAGATAACACCCCCTAG 59.598 52.174 7.62 0.00 43.67 3.02
189 190 3.401683 CTCCTAGGAGATAACACCCCCTA 59.598 52.174 31.97 0.00 44.53 3.53
190 191 2.180308 CTCCTAGGAGATAACACCCCCT 59.820 54.545 31.97 0.00 44.53 4.79
191 192 2.179424 TCTCCTAGGAGATAACACCCCC 59.821 54.545 33.59 0.00 45.26 5.40
192 193 3.614568 TCTCCTAGGAGATAACACCCC 57.385 52.381 33.59 0.00 45.26 4.95
202 203 0.833949 GTTTGGGGCTCTCCTAGGAG 59.166 60.000 30.15 30.15 43.21 3.69
203 204 0.620700 GGTTTGGGGCTCTCCTAGGA 60.621 60.000 11.98 11.98 35.33 2.94
204 205 0.621862 AGGTTTGGGGCTCTCCTAGG 60.622 60.000 0.82 0.82 35.33 3.02
205 206 0.543749 CAGGTTTGGGGCTCTCCTAG 59.456 60.000 0.00 0.00 35.33 3.02
206 207 0.914417 CCAGGTTTGGGGCTCTCCTA 60.914 60.000 0.00 0.00 41.05 2.94
207 208 2.234296 CCAGGTTTGGGGCTCTCCT 61.234 63.158 0.00 0.00 41.05 3.69
208 209 2.356667 CCAGGTTTGGGGCTCTCC 59.643 66.667 0.00 0.00 41.05 3.71
216 217 1.743394 GCGAATCTTACCCAGGTTTGG 59.257 52.381 0.00 0.00 44.60 3.28
217 218 1.743394 GGCGAATCTTACCCAGGTTTG 59.257 52.381 0.00 0.00 30.56 2.93
218 219 1.677820 CGGCGAATCTTACCCAGGTTT 60.678 52.381 0.00 0.00 0.00 3.27
219 220 0.107848 CGGCGAATCTTACCCAGGTT 60.108 55.000 0.00 0.00 0.00 3.50
220 221 1.520666 CGGCGAATCTTACCCAGGT 59.479 57.895 0.00 0.00 0.00 4.00
221 222 1.227556 CCGGCGAATCTTACCCAGG 60.228 63.158 9.30 0.00 0.00 4.45
222 223 1.887707 GCCGGCGAATCTTACCCAG 60.888 63.158 12.58 0.00 0.00 4.45
223 224 2.188469 GCCGGCGAATCTTACCCA 59.812 61.111 12.58 0.00 0.00 4.51
224 225 2.965462 CGCCGGCGAATCTTACCC 60.965 66.667 44.86 0.00 42.83 3.69
235 236 4.166011 GAAGACATGCACGCCGGC 62.166 66.667 19.07 19.07 0.00 6.13
236 237 3.853330 CGAAGACATGCACGCCGG 61.853 66.667 0.00 0.00 0.00 6.13
237 238 4.505217 GCGAAGACATGCACGCCG 62.505 66.667 5.89 8.38 44.27 6.46
239 240 1.358725 TAAGGCGAAGACATGCACGC 61.359 55.000 8.46 8.46 39.87 5.34
240 241 1.258982 GATAAGGCGAAGACATGCACG 59.741 52.381 0.00 0.00 39.87 5.34
241 242 1.599542 GGATAAGGCGAAGACATGCAC 59.400 52.381 0.00 0.00 39.87 4.57
242 243 1.486310 AGGATAAGGCGAAGACATGCA 59.514 47.619 0.00 0.00 39.87 3.96
243 244 1.869767 CAGGATAAGGCGAAGACATGC 59.130 52.381 0.00 0.00 39.87 4.06
244 245 3.185246 ACAGGATAAGGCGAAGACATG 57.815 47.619 0.00 0.00 39.87 3.21
245 246 3.432326 GGAACAGGATAAGGCGAAGACAT 60.432 47.826 0.00 0.00 39.87 3.06
246 247 2.093658 GGAACAGGATAAGGCGAAGACA 60.094 50.000 0.00 0.00 39.87 3.41
247 248 2.093658 TGGAACAGGATAAGGCGAAGAC 60.094 50.000 0.00 0.00 0.00 3.01
248 249 2.184533 TGGAACAGGATAAGGCGAAGA 58.815 47.619 0.00 0.00 0.00 2.87
249 250 2.691409 TGGAACAGGATAAGGCGAAG 57.309 50.000 0.00 0.00 0.00 3.79
262 263 2.579657 ATCGCCGGTGTCTGGAACA 61.580 57.895 16.01 0.00 34.78 3.18
263 264 2.100631 CATCGCCGGTGTCTGGAAC 61.101 63.158 16.01 0.00 0.00 3.62
264 265 2.264480 CATCGCCGGTGTCTGGAA 59.736 61.111 16.01 0.00 0.00 3.53
265 266 2.994995 ACATCGCCGGTGTCTGGA 60.995 61.111 16.01 0.00 0.00 3.86
266 267 2.509336 GACATCGCCGGTGTCTGG 60.509 66.667 22.56 5.71 42.04 3.86
269 270 0.172803 AGTAAGACATCGCCGGTGTC 59.827 55.000 22.38 22.38 44.85 3.67
270 271 0.108804 CAGTAAGACATCGCCGGTGT 60.109 55.000 16.01 0.85 0.00 4.16
271 272 0.806102 CCAGTAAGACATCGCCGGTG 60.806 60.000 9.28 9.28 0.00 4.94
272 273 1.515954 CCAGTAAGACATCGCCGGT 59.484 57.895 1.90 0.00 0.00 5.28
273 274 1.883084 GCCAGTAAGACATCGCCGG 60.883 63.158 0.00 0.00 0.00 6.13
274 275 0.872021 GAGCCAGTAAGACATCGCCG 60.872 60.000 0.00 0.00 0.00 6.46
275 276 0.530870 GGAGCCAGTAAGACATCGCC 60.531 60.000 0.00 0.00 0.00 5.54
276 277 0.530870 GGGAGCCAGTAAGACATCGC 60.531 60.000 0.00 0.00 0.00 4.58
277 278 0.824109 TGGGAGCCAGTAAGACATCG 59.176 55.000 0.00 0.00 0.00 3.84
278 279 1.834263 AGTGGGAGCCAGTAAGACATC 59.166 52.381 0.00 0.00 35.09 3.06
279 280 1.958288 AGTGGGAGCCAGTAAGACAT 58.042 50.000 0.00 0.00 35.09 3.06
280 281 2.615986 TAGTGGGAGCCAGTAAGACA 57.384 50.000 0.00 0.00 36.60 3.41
281 282 3.031736 TCATAGTGGGAGCCAGTAAGAC 58.968 50.000 0.00 0.00 41.96 3.01
282 283 3.398318 TCATAGTGGGAGCCAGTAAGA 57.602 47.619 0.00 0.00 41.96 2.10
283 284 4.696479 AATCATAGTGGGAGCCAGTAAG 57.304 45.455 0.00 0.00 41.96 2.34
284 285 4.040461 GCTAATCATAGTGGGAGCCAGTAA 59.960 45.833 0.00 0.00 41.96 2.24
285 286 3.578716 GCTAATCATAGTGGGAGCCAGTA 59.421 47.826 0.00 0.00 42.71 2.74
286 287 2.370189 GCTAATCATAGTGGGAGCCAGT 59.630 50.000 0.00 0.00 40.67 4.00
287 288 3.051081 GCTAATCATAGTGGGAGCCAG 57.949 52.381 0.00 0.00 32.34 4.85
289 290 2.481289 GGCTAATCATAGTGGGAGCC 57.519 55.000 0.00 0.00 42.45 4.70
290 291 3.604582 GATGGCTAATCATAGTGGGAGC 58.395 50.000 0.00 0.00 35.16 4.70
291 292 3.843027 AGGATGGCTAATCATAGTGGGAG 59.157 47.826 2.98 0.00 36.98 4.30
292 293 3.874316 AGGATGGCTAATCATAGTGGGA 58.126 45.455 2.98 0.00 36.98 4.37
293 294 4.330250 CAAGGATGGCTAATCATAGTGGG 58.670 47.826 2.98 0.00 36.98 4.61
294 295 4.330250 CCAAGGATGGCTAATCATAGTGG 58.670 47.826 2.98 0.00 40.58 4.00
295 296 4.330250 CCCAAGGATGGCTAATCATAGTG 58.670 47.826 2.98 0.00 46.09 2.74
296 297 3.245052 GCCCAAGGATGGCTAATCATAGT 60.245 47.826 0.00 0.00 46.09 2.12
297 298 3.350833 GCCCAAGGATGGCTAATCATAG 58.649 50.000 0.00 0.00 46.09 2.23
298 299 3.439857 GCCCAAGGATGGCTAATCATA 57.560 47.619 0.00 0.00 46.09 2.15
299 300 2.299326 GCCCAAGGATGGCTAATCAT 57.701 50.000 0.00 0.00 46.09 2.45
300 301 3.827505 GCCCAAGGATGGCTAATCA 57.172 52.632 0.00 0.00 46.09 2.57
318 319 2.297701 GGGTGGTAGGTGCAACATATG 58.702 52.381 3.64 0.00 34.67 1.78
319 320 1.134220 CGGGTGGTAGGTGCAACATAT 60.134 52.381 3.64 0.00 34.67 1.78
320 321 0.250793 CGGGTGGTAGGTGCAACATA 59.749 55.000 3.64 0.00 39.98 2.29
321 322 1.002624 CGGGTGGTAGGTGCAACAT 60.003 57.895 3.64 0.00 39.98 2.71
322 323 2.141448 TCGGGTGGTAGGTGCAACA 61.141 57.895 3.64 0.00 39.98 3.33
323 324 1.670083 GTCGGGTGGTAGGTGCAAC 60.670 63.158 0.00 0.00 0.00 4.17
324 325 2.141448 TGTCGGGTGGTAGGTGCAA 61.141 57.895 0.00 0.00 0.00 4.08
325 326 2.524640 TGTCGGGTGGTAGGTGCA 60.525 61.111 0.00 0.00 0.00 4.57
326 327 2.047560 GTGTCGGGTGGTAGGTGC 60.048 66.667 0.00 0.00 0.00 5.01
327 328 2.260434 CGTGTCGGGTGGTAGGTG 59.740 66.667 0.00 0.00 0.00 4.00
328 329 3.688159 GCGTGTCGGGTGGTAGGT 61.688 66.667 0.00 0.00 0.00 3.08
329 330 4.789075 CGCGTGTCGGGTGGTAGG 62.789 72.222 0.00 0.00 35.14 3.18
342 343 4.849329 GATCGGTTCTCGGCGCGT 62.849 66.667 8.43 0.00 39.77 6.01
344 345 4.849329 ACGATCGGTTCTCGGCGC 62.849 66.667 20.98 0.00 40.37 6.53
345 346 2.949678 CACGATCGGTTCTCGGCG 60.950 66.667 20.98 0.00 40.37 6.46
346 347 2.582498 CCACGATCGGTTCTCGGC 60.582 66.667 20.98 0.00 40.37 5.54
347 348 2.582498 GCCACGATCGGTTCTCGG 60.582 66.667 20.98 10.37 40.37 4.63
380 381 7.851963 TCTTCTTCGGTTTTACGTACATTTTTG 59.148 33.333 0.00 0.00 34.94 2.44
381 382 7.918643 TCTTCTTCGGTTTTACGTACATTTTT 58.081 30.769 0.00 0.00 34.94 1.94
382 383 7.481275 TCTTCTTCGGTTTTACGTACATTTT 57.519 32.000 0.00 0.00 34.94 1.82
385 386 7.601508 AGATTTCTTCTTCGGTTTTACGTACAT 59.398 33.333 0.00 0.00 34.94 2.29
393 394 5.514274 TGCAAGATTTCTTCTTCGGTTTT 57.486 34.783 0.00 0.00 42.98 2.43
395 396 5.712152 AATGCAAGATTTCTTCTTCGGTT 57.288 34.783 0.00 0.00 42.98 4.44
396 397 7.396540 AATAATGCAAGATTTCTTCTTCGGT 57.603 32.000 0.00 0.00 42.98 4.69
397 398 8.693542 AAAATAATGCAAGATTTCTTCTTCGG 57.306 30.769 9.02 0.00 42.98 4.30
425 426 5.949952 TGTGTCTCCTGATACTGCTACTTAA 59.050 40.000 0.00 0.00 35.67 1.85
426 546 5.506708 TGTGTCTCCTGATACTGCTACTTA 58.493 41.667 0.00 0.00 35.67 2.24
427 547 4.344978 TGTGTCTCCTGATACTGCTACTT 58.655 43.478 0.00 0.00 35.67 2.24
430 550 4.086457 TGTTGTGTCTCCTGATACTGCTA 58.914 43.478 0.00 0.00 35.67 3.49
433 553 5.336150 AGATGTTGTGTCTCCTGATACTG 57.664 43.478 0.00 0.00 35.67 2.74
434 554 5.719085 AGAAGATGTTGTGTCTCCTGATACT 59.281 40.000 0.00 0.00 35.67 2.12
435 555 5.971763 AGAAGATGTTGTGTCTCCTGATAC 58.028 41.667 0.00 0.00 35.29 2.24
436 556 6.214191 GAGAAGATGTTGTGTCTCCTGATA 57.786 41.667 0.00 0.00 32.08 2.15
509 633 6.158695 AGCCTCATCCTTAAATAGAGTTGGAA 59.841 38.462 0.00 0.00 0.00 3.53
558 684 0.765510 AAGGGGTGTGAGAACAGTCC 59.234 55.000 0.00 0.00 0.00 3.85
569 695 1.894699 GGATAAGGGAGAAGGGGTGT 58.105 55.000 0.00 0.00 0.00 4.16
712 866 5.062528 CGTTAACTAGGGTAGTAGCTAGCT 58.937 45.833 23.12 23.12 38.26 3.32
713 867 4.215185 CCGTTAACTAGGGTAGTAGCTAGC 59.785 50.000 6.62 6.62 38.26 3.42
714 868 4.759183 CCCGTTAACTAGGGTAGTAGCTAG 59.241 50.000 9.76 0.00 42.67 3.42
715 869 4.718961 CCCGTTAACTAGGGTAGTAGCTA 58.281 47.826 9.76 0.00 42.67 3.32
716 870 3.560105 CCCGTTAACTAGGGTAGTAGCT 58.440 50.000 9.76 0.00 42.67 3.32
717 871 3.998099 CCCGTTAACTAGGGTAGTAGC 57.002 52.381 9.76 0.00 42.67 3.58
725 879 3.277142 AATCTTGGCCCGTTAACTAGG 57.723 47.619 0.00 5.65 0.00 3.02
726 880 4.569564 GTGTAATCTTGGCCCGTTAACTAG 59.430 45.833 0.00 0.00 0.00 2.57
727 881 4.506758 GTGTAATCTTGGCCCGTTAACTA 58.493 43.478 0.00 0.00 0.00 2.24
728 882 3.340928 GTGTAATCTTGGCCCGTTAACT 58.659 45.455 0.00 0.00 0.00 2.24
757 911 1.084370 GGCGAGGGTCGTTGATTGAG 61.084 60.000 0.00 0.00 42.81 3.02
809 963 1.542881 AGGGGATCACGGGGGAAAA 60.543 57.895 0.00 0.00 0.00 2.29
849 1008 3.097614 GGCGCTTATATAGAGGGAAGGA 58.902 50.000 7.64 0.00 0.00 3.36
851 1010 2.159226 CGGGCGCTTATATAGAGGGAAG 60.159 54.545 7.64 0.00 0.00 3.46
888 1058 4.572870 GGAATGGAAGGGGGATTTTCTTCT 60.573 45.833 0.00 0.00 37.59 2.85
897 1067 0.327576 GAGGAGGAATGGAAGGGGGA 60.328 60.000 0.00 0.00 0.00 4.81
924 1109 1.755008 GAGAGAGAGGGTGGGGACG 60.755 68.421 0.00 0.00 0.00 4.79
952 1145 4.477975 GCGGACGGACAGACGGAG 62.478 72.222 0.00 0.00 38.39 4.63
995 1190 2.973082 GCTTTGCCGCCATTTCCT 59.027 55.556 0.00 0.00 0.00 3.36
1008 1203 4.626081 ACCACCAGCTCGCGCTTT 62.626 61.111 5.56 0.00 46.47 3.51
1408 1606 2.035237 TACGATGGTGATTCGGGGGC 62.035 60.000 0.00 0.00 40.83 5.80
1409 1607 0.685097 ATACGATGGTGATTCGGGGG 59.315 55.000 0.00 0.00 40.83 5.40
1471 1669 2.281276 GGACGGGCAAGAAACGGT 60.281 61.111 0.00 0.00 0.00 4.83
1490 1688 4.505217 CAGATCACGCGCGGTTGC 62.505 66.667 35.22 19.89 37.91 4.17
1629 1840 2.623416 CAGGAACAGGACAAGGGAAAAC 59.377 50.000 0.00 0.00 0.00 2.43
1815 2035 2.372264 GTGAGGGTGCATCACATGATT 58.628 47.619 12.91 0.00 45.18 2.57
1889 2115 6.538381 AGAACCACAAAAATGATTTGTTCCAC 59.462 34.615 11.89 0.00 40.30 4.02
1891 2117 7.408910 CAAGAACCACAAAAATGATTTGTTCC 58.591 34.615 11.89 0.00 40.30 3.62
1892 2118 7.279758 TCCAAGAACCACAAAAATGATTTGTTC 59.720 33.333 3.95 8.96 40.30 3.18
1966 2194 6.064060 TCTAAATTATTGTGCATCAGAGGGG 58.936 40.000 0.00 0.00 0.00 4.79
1970 2198 8.043113 AGACACTCTAAATTATTGTGCATCAGA 58.957 33.333 0.00 0.00 32.49 3.27
1971 2199 8.121086 CAGACACTCTAAATTATTGTGCATCAG 58.879 37.037 0.00 0.00 32.49 2.90
2035 2326 9.565213 CTCTAAATGTTTTTCATAAGGAGCAAG 57.435 33.333 0.00 0.00 35.48 4.01
2036 2327 8.028938 GCTCTAAATGTTTTTCATAAGGAGCAA 58.971 33.333 0.00 0.00 42.85 3.91
2037 2328 7.176515 TGCTCTAAATGTTTTTCATAAGGAGCA 59.823 33.333 17.74 17.74 45.93 4.26
2038 2329 7.538575 TGCTCTAAATGTTTTTCATAAGGAGC 58.461 34.615 0.00 0.00 43.17 4.70
2039 2330 9.912634 TTTGCTCTAAATGTTTTTCATAAGGAG 57.087 29.630 0.00 0.00 35.48 3.69
2050 2341 9.696917 CTTCCATAAGTTTTGCTCTAAATGTTT 57.303 29.630 0.00 0.00 0.00 2.83
2051 2342 9.077885 TCTTCCATAAGTTTTGCTCTAAATGTT 57.922 29.630 0.00 0.00 34.13 2.71
2052 2343 8.515414 GTCTTCCATAAGTTTTGCTCTAAATGT 58.485 33.333 0.00 0.00 34.13 2.71
2053 2344 8.514594 TGTCTTCCATAAGTTTTGCTCTAAATG 58.485 33.333 0.00 0.00 34.13 2.32
2054 2345 8.635765 TGTCTTCCATAAGTTTTGCTCTAAAT 57.364 30.769 0.00 0.00 34.13 1.40
2055 2346 8.635765 ATGTCTTCCATAAGTTTTGCTCTAAA 57.364 30.769 0.00 0.00 34.13 1.85
2056 2347 8.635765 AATGTCTTCCATAAGTTTTGCTCTAA 57.364 30.769 0.00 0.00 34.13 2.10
2057 2348 8.514594 CAAATGTCTTCCATAAGTTTTGCTCTA 58.485 33.333 0.00 0.00 34.13 2.43
2058 2349 7.373493 CAAATGTCTTCCATAAGTTTTGCTCT 58.627 34.615 0.00 0.00 34.13 4.09
2059 2350 6.089954 GCAAATGTCTTCCATAAGTTTTGCTC 59.910 38.462 17.89 3.41 42.55 4.26
2060 2351 5.928264 GCAAATGTCTTCCATAAGTTTTGCT 59.072 36.000 17.89 0.00 42.55 3.91
2061 2352 5.695816 TGCAAATGTCTTCCATAAGTTTTGC 59.304 36.000 18.11 18.11 43.92 3.68
2062 2353 7.385752 ACATGCAAATGTCTTCCATAAGTTTTG 59.614 33.333 0.00 0.00 34.72 2.44
2063 2354 7.444299 ACATGCAAATGTCTTCCATAAGTTTT 58.556 30.769 0.00 0.00 34.13 2.43
2076 2367 8.434661 CAAAACACCTAATAACATGCAAATGTC 58.565 33.333 0.00 0.00 32.87 3.06
2078 2369 8.309163 ACAAAACACCTAATAACATGCAAATG 57.691 30.769 0.00 0.00 0.00 2.32
2147 2498 6.847421 ACGTACATAGAAAGGAACCTAAGT 57.153 37.500 0.00 0.00 0.00 2.24
2168 2725 7.974675 ACAGTTCTGGATCACAAAATTATACG 58.025 34.615 4.82 0.00 0.00 3.06
2239 2807 4.094887 ACACTTATAAATTCTGCACGCAGG 59.905 41.667 18.47 2.32 43.75 4.85
2274 2846 4.325028 TCTGCAAAGCAAATTGACATGT 57.675 36.364 0.00 0.00 38.41 3.21
2343 2917 7.548780 TCCCTCAAATTTATAAAACATTGCAGC 59.451 33.333 1.21 0.00 0.00 5.25
2358 2932 6.729690 TGTGAGACATTTTCCCTCAAATTT 57.270 33.333 0.00 0.00 38.49 1.82
2360 2934 5.835280 AGTTGTGAGACATTTTCCCTCAAAT 59.165 36.000 0.00 0.00 38.49 2.32
2749 3325 7.172190 AGGATTTCATCACGCAATAGATTGTAG 59.828 37.037 4.27 2.16 39.88 2.74
2819 3395 1.474077 CTTAGCAAACCATGGTCCAGC 59.526 52.381 20.07 21.20 40.93 4.85
3064 3657 0.832983 AAAGGAGGCATTTGCAGGCA 60.833 50.000 4.74 0.00 44.36 4.75
3065 3658 1.135721 CTAAAGGAGGCATTTGCAGGC 59.864 52.381 4.74 0.00 44.36 4.85
3074 3667 3.117926 TGCTAATGATGCTAAAGGAGGCA 60.118 43.478 0.00 0.00 42.80 4.75
3075 3668 3.480470 TGCTAATGATGCTAAAGGAGGC 58.520 45.455 0.00 0.00 0.00 4.70
3152 3760 5.533528 CAGCAACCATCAGATATGGAATTGA 59.466 40.000 10.90 0.00 41.64 2.57
3153 3761 5.769367 CAGCAACCATCAGATATGGAATTG 58.231 41.667 10.90 6.95 41.64 2.32
3167 3775 3.164268 TGTTTTATCCTGCAGCAACCAT 58.836 40.909 8.66 0.00 0.00 3.55
3185 3793 1.903404 CGCCCCCTCAAGCTTTGTT 60.903 57.895 0.00 0.00 0.00 2.83
3399 4009 1.165907 GCAAACAAAAAGGCAGGGGC 61.166 55.000 0.00 0.00 40.13 5.80
3428 4038 6.315144 AGAATTCCAAAACAAAAACCCTTTCG 59.685 34.615 0.65 0.00 0.00 3.46
3472 4082 9.911788 AGAAATGACACAGTAATATTGAAGGAT 57.088 29.630 0.00 0.00 0.00 3.24
3581 4192 0.696501 GAAACCACCTCAGGGGCTAA 59.303 55.000 0.00 0.00 39.10 3.09
3661 4273 2.758089 GCCAGGAGCATCGCAACAG 61.758 63.158 0.00 0.00 42.97 3.16
3688 4300 5.316987 ACACTTATTTTGAGACCAAGGGAG 58.683 41.667 0.00 0.00 33.23 4.30
3689 4301 5.073144 AGACACTTATTTTGAGACCAAGGGA 59.927 40.000 0.00 0.00 33.23 4.20
3690 4302 5.316987 AGACACTTATTTTGAGACCAAGGG 58.683 41.667 0.00 0.00 33.23 3.95
3691 4303 6.486657 TCAAGACACTTATTTTGAGACCAAGG 59.513 38.462 0.00 0.00 33.23 3.61
3692 4304 7.496529 TCAAGACACTTATTTTGAGACCAAG 57.503 36.000 0.00 0.00 33.23 3.61
3693 4305 6.017109 GCTCAAGACACTTATTTTGAGACCAA 60.017 38.462 15.10 0.00 45.82 3.67
3694 4306 5.470098 GCTCAAGACACTTATTTTGAGACCA 59.530 40.000 15.10 0.00 45.82 4.02
3695 4307 5.703130 AGCTCAAGACACTTATTTTGAGACC 59.297 40.000 15.10 1.32 45.82 3.85
3696 4308 6.793492 AGCTCAAGACACTTATTTTGAGAC 57.207 37.500 15.10 7.85 45.82 3.36
3697 4309 8.150945 ACTAAGCTCAAGACACTTATTTTGAGA 58.849 33.333 15.10 0.00 45.82 3.27
3698 4310 8.316640 ACTAAGCTCAAGACACTTATTTTGAG 57.683 34.615 8.33 8.33 45.75 3.02
3699 4311 9.944376 ATACTAAGCTCAAGACACTTATTTTGA 57.056 29.630 3.19 0.00 0.00 2.69
3707 4319 9.726438 ACAAATTTATACTAAGCTCAAGACACT 57.274 29.630 3.19 0.00 0.00 3.55
3733 4345 7.881751 TGTCTCAACTTTGTACTAGCTCTAGTA 59.118 37.037 11.59 11.59 43.98 1.82
3735 4347 7.024768 GTGTCTCAACTTTGTACTAGCTCTAG 58.975 42.308 0.00 2.55 39.04 2.43
3736 4348 6.715718 AGTGTCTCAACTTTGTACTAGCTCTA 59.284 38.462 0.00 0.00 0.00 2.43
3737 4349 5.536916 AGTGTCTCAACTTTGTACTAGCTCT 59.463 40.000 0.00 0.00 0.00 4.09
3738 4350 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
3739 4351 5.302059 TGAGTGTCTCAACTTTGTACTAGCT 59.698 40.000 0.00 0.00 37.57 3.32
3740 4352 5.529791 TGAGTGTCTCAACTTTGTACTAGC 58.470 41.667 0.00 0.00 37.57 3.42
3741 4353 8.594881 AAATGAGTGTCTCAACTTTGTACTAG 57.405 34.615 3.58 0.00 44.04 2.57
3742 4354 8.826710 CAAAATGAGTGTCTCAACTTTGTACTA 58.173 33.333 18.72 0.00 44.04 1.82
3743 4355 7.201732 CCAAAATGAGTGTCTCAACTTTGTACT 60.202 37.037 21.78 0.00 44.04 2.73
3744 4356 6.912591 CCAAAATGAGTGTCTCAACTTTGTAC 59.087 38.462 21.78 0.00 44.04 2.90
3745 4357 6.039270 CCCAAAATGAGTGTCTCAACTTTGTA 59.961 38.462 21.78 0.00 44.04 2.41
3746 4358 5.163519 CCCAAAATGAGTGTCTCAACTTTGT 60.164 40.000 21.78 4.05 44.04 2.83
3747 4359 5.067674 TCCCAAAATGAGTGTCTCAACTTTG 59.932 40.000 19.37 19.37 44.04 2.77
3748 4360 5.067805 GTCCCAAAATGAGTGTCTCAACTTT 59.932 40.000 3.58 4.52 44.04 2.66
3749 4361 4.580580 GTCCCAAAATGAGTGTCTCAACTT 59.419 41.667 3.58 0.00 44.04 2.66
3750 4362 4.137543 GTCCCAAAATGAGTGTCTCAACT 58.862 43.478 3.58 0.00 44.04 3.16
3751 4363 3.058914 CGTCCCAAAATGAGTGTCTCAAC 60.059 47.826 3.58 0.00 44.04 3.18
3752 4364 3.138304 CGTCCCAAAATGAGTGTCTCAA 58.862 45.455 3.58 0.00 44.04 3.02
3753 4365 2.549992 CCGTCCCAAAATGAGTGTCTCA 60.550 50.000 1.92 1.92 44.99 3.27
3754 4366 2.076863 CCGTCCCAAAATGAGTGTCTC 58.923 52.381 0.00 0.00 0.00 3.36
3755 4367 1.697432 TCCGTCCCAAAATGAGTGTCT 59.303 47.619 0.00 0.00 0.00 3.41
3756 4368 2.076863 CTCCGTCCCAAAATGAGTGTC 58.923 52.381 0.00 0.00 0.00 3.67
3757 4369 1.271379 CCTCCGTCCCAAAATGAGTGT 60.271 52.381 0.00 0.00 0.00 3.55
3758 4370 1.453155 CCTCCGTCCCAAAATGAGTG 58.547 55.000 0.00 0.00 0.00 3.51
3759 4371 0.328258 CCCTCCGTCCCAAAATGAGT 59.672 55.000 0.00 0.00 0.00 3.41
3760 4372 0.618458 TCCCTCCGTCCCAAAATGAG 59.382 55.000 0.00 0.00 0.00 2.90
3761 4373 0.618458 CTCCCTCCGTCCCAAAATGA 59.382 55.000 0.00 0.00 0.00 2.57
3762 4374 0.328258 ACTCCCTCCGTCCCAAAATG 59.672 55.000 0.00 0.00 0.00 2.32
3763 4375 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3764 4376 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3765 4377 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
3766 4378 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
3767 4379 0.928505 TATGTACTCCCTCCGTCCCA 59.071 55.000 0.00 0.00 0.00 4.37
3768 4380 2.305858 ATATGTACTCCCTCCGTCCC 57.694 55.000 0.00 0.00 0.00 4.46
3769 4381 5.780984 CTTAAATATGTACTCCCTCCGTCC 58.219 45.833 0.00 0.00 0.00 4.79
3770 4382 5.010820 AGCTTAAATATGTACTCCCTCCGTC 59.989 44.000 0.00 0.00 0.00 4.79
3771 4383 4.900054 AGCTTAAATATGTACTCCCTCCGT 59.100 41.667 0.00 0.00 0.00 4.69
3772 4384 5.244178 AGAGCTTAAATATGTACTCCCTCCG 59.756 44.000 0.00 0.00 0.00 4.63
3773 4385 6.459923 CAGAGCTTAAATATGTACTCCCTCC 58.540 44.000 0.00 0.00 0.00 4.30
3774 4386 6.459923 CCAGAGCTTAAATATGTACTCCCTC 58.540 44.000 0.00 0.00 0.00 4.30
3775 4387 5.221742 GCCAGAGCTTAAATATGTACTCCCT 60.222 44.000 0.00 0.00 35.50 4.20
3776 4388 4.998033 GCCAGAGCTTAAATATGTACTCCC 59.002 45.833 0.00 0.00 35.50 4.30
3777 4389 5.611374 TGCCAGAGCTTAAATATGTACTCC 58.389 41.667 0.00 0.00 40.80 3.85
3778 4390 6.516718 TCTGCCAGAGCTTAAATATGTACTC 58.483 40.000 0.00 0.00 40.80 2.59
3779 4391 6.485830 TCTGCCAGAGCTTAAATATGTACT 57.514 37.500 0.00 0.00 40.80 2.73
3780 4392 6.931281 TCATCTGCCAGAGCTTAAATATGTAC 59.069 38.462 0.00 0.00 40.80 2.90
3781 4393 7.066307 TCATCTGCCAGAGCTTAAATATGTA 57.934 36.000 0.00 0.00 40.80 2.29
3782 4394 5.933617 TCATCTGCCAGAGCTTAAATATGT 58.066 37.500 0.00 0.00 40.80 2.29
3783 4395 8.734218 ATATCATCTGCCAGAGCTTAAATATG 57.266 34.615 0.00 0.00 40.80 1.78
3795 4407 7.273320 AGTTGATTCAAATATCATCTGCCAG 57.727 36.000 0.00 0.00 34.74 4.85
3837 4449 5.412640 TGCAGCCAATCAACAGAATTTATG 58.587 37.500 0.00 0.00 0.00 1.90
3838 4450 5.664294 TGCAGCCAATCAACAGAATTTAT 57.336 34.783 0.00 0.00 0.00 1.40
3876 4488 2.079158 TCAGCATCCAAAAGAAGCTCG 58.921 47.619 0.00 0.00 46.36 5.03
3899 4511 1.162698 CACATCCCTCAGCAACACAG 58.837 55.000 0.00 0.00 0.00 3.66
3940 4614 1.718396 TTCTGAATCTGCGTCAGCTG 58.282 50.000 7.63 7.63 45.42 4.24
3943 4617 5.164233 TCTAACTTTCTGAATCTGCGTCAG 58.836 41.667 0.00 1.02 43.28 3.51
3954 4628 7.272978 AGTGCAAAGTACTTCTAACTTTCTGA 58.727 34.615 8.95 0.00 43.52 3.27
3986 4660 9.809096 TTGCACTTCAAAGTTCACATAAATAAA 57.191 25.926 0.00 0.00 37.08 1.40
3989 4663 9.979578 TTATTGCACTTCAAAGTTCACATAAAT 57.020 25.926 0.00 0.00 38.34 1.40
4000 4674 5.531634 TGCTTCCTTTATTGCACTTCAAAG 58.468 37.500 0.00 0.00 38.34 2.77
4054 4728 1.419387 AGCAGCTAATAGCCTTGGGAG 59.581 52.381 8.88 0.00 43.77 4.30
4061 4735 5.354234 TGTTCAGTTAAAGCAGCTAATAGCC 59.646 40.000 8.88 0.00 43.77 3.93
4067 4741 7.270757 TGAAAATGTTCAGTTAAAGCAGCTA 57.729 32.000 0.00 0.00 38.88 3.32
4068 4742 6.147864 TGAAAATGTTCAGTTAAAGCAGCT 57.852 33.333 0.00 0.00 38.88 4.24
4081 4755 7.917505 AGAAGAAACACATGTCTGAAAATGTTC 59.082 33.333 0.00 0.00 34.81 3.18
4082 4756 7.775120 AGAAGAAACACATGTCTGAAAATGTT 58.225 30.769 0.00 0.00 34.81 2.71
4140 4840 7.035612 GGTCCAAAACAACATGATAATCTTCC 58.964 38.462 0.00 0.00 0.00 3.46
4192 4895 6.553100 AGAACTATAGATCTTGTTCCCTGGAG 59.447 42.308 21.62 2.88 39.45 3.86
4193 4896 6.325028 CAGAACTATAGATCTTGTTCCCTGGA 59.675 42.308 21.62 0.00 39.45 3.86
4194 4897 6.325028 TCAGAACTATAGATCTTGTTCCCTGG 59.675 42.308 21.62 14.10 39.45 4.45
4195 4898 7.353414 TCAGAACTATAGATCTTGTTCCCTG 57.647 40.000 21.62 17.17 39.45 4.45
4196 4899 7.400339 TGTTCAGAACTATAGATCTTGTTCCCT 59.600 37.037 21.62 9.99 39.45 4.20
4197 4900 7.556844 TGTTCAGAACTATAGATCTTGTTCCC 58.443 38.462 21.62 13.36 39.45 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.